BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025460
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DXL|A Chain A, Crystal Structure Of Aed7 From Aedes Aegypti
 pdb|3DY9|A Chain A, Crystal Structure Of Aed7 Potassium Bromide Soak
 pdb|3DYE|A Chain A, Crystal Structure Of Aed7-norepineprhine Complex
 pdb|3DZT|A Chain A, Aed7-Leukotriene E4 Complex
          Length = 303

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 110 RTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEW-- 167
           RT  YDPV      +V     + YPS  ++  + +AY  A+K+ P      A   + +  
Sbjct: 57  RTGLYDPVAQKFDASVIQEQFKAYPSLGEKSKV-EAYANAVKQLPSTNNDCAAVFKAYDP 115

Query: 168 ---ARGQTASSLVEFPSK--EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA 222
              A   T+ +L     +  +G  E L KDI ++      F  ++++  G  +  +L   
Sbjct: 116 VHKAHKDTSKNLFHGNKELTKGLYEKLGKDIRQKKQSYFEFCENKYYPAGSDKRQQLCQI 175

Query: 223 TEPTVLE 229
            + TVL+
Sbjct: 176 RQYTVLD 182


>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
           Burkholderia Thailandensis
 pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
           Burkholderia Thailandensis
 pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
           Burkholderia Thailandensis Bound To Deoxyadenosine
           Monophosphate
 pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
           Burkholderia Thailandensis Bound To Deoxyadenosine
           Monophosphate
 pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
           Burkholderia Thailandensis Bound To Adp
 pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
           Burkholderia Thailandensis Bound To Adp
          Length = 145

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 218 ELANATEPTVLEK--VRSTFFDNIGTSIIHGED 248
           +L  AT+P   EK  +R+ F D+I  + +HG D
Sbjct: 92  DLMGATDPKKAEKGTIRADFADSIDANAVHGSD 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,706,361
Number of Sequences: 62578
Number of extensions: 258723
Number of successful extensions: 652
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 2
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)