Query 025461
Match_columns 252
No_of_seqs 144 out of 279
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205 Rho GDP-dissociation i 100.0 8.6E-81 1.9E-85 540.9 22.0 196 49-247 1-198 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 3.4E-77 7.4E-82 523.9 16.5 189 55-246 10-199 (200)
3 PF02221 E1_DerP2_DerF2: ML do 96.2 0.091 2E-06 41.7 10.8 93 146-244 25-134 (134)
4 cd00917 PG-PI_TP The phosphati 94.1 0.64 1.4E-05 37.6 9.7 89 149-242 24-122 (122)
5 smart00737 ML Domain involved 91.6 1.9 4.2E-05 33.9 9.0 87 149-240 21-116 (118)
6 cd00258 GM2-AP GM2 activator p 87.9 8 0.00017 34.0 10.5 39 204-245 122-160 (162)
7 PF05351 GMP_PDE_delta: GMP-PD 85.0 2.6 5.6E-05 36.7 6.0 87 155-242 63-156 (157)
8 PF11797 DUF3324: Protein of u 84.7 11 0.00024 31.3 9.4 83 156-245 43-130 (140)
9 cd00912 ML The ML (MD-2-relate 80.1 22 0.00049 28.4 9.4 92 146-240 23-125 (127)
10 KOG4680 Uncharacterized conser 79.7 39 0.00084 29.5 11.0 80 158-245 59-145 (153)
11 cd00915 MD-1_MD-2 MD-1 and MD- 67.1 72 0.0016 27.0 9.5 88 146-241 28-129 (130)
12 PF15432 Sec-ASP3: Accessory S 57.9 29 0.00062 29.2 5.5 53 149-209 50-102 (128)
13 PF04234 CopC: CopC domain; I 57.2 65 0.0014 24.9 7.1 28 215-244 69-96 (97)
14 PF14524 Wzt_C: Wzt C-terminal 42.6 1.6E+02 0.0034 22.7 9.8 115 113-246 9-130 (142)
15 PHA00407 phage lambda Rz1-like 39.7 12 0.00026 29.6 0.5 12 92-103 27-38 (84)
16 PF02494 HYR: HYR domain; Int 35.1 97 0.0021 22.7 4.8 25 209-233 48-72 (81)
17 PF02114 Phosducin: Phosducin; 33.9 42 0.0009 31.2 3.2 52 48-99 52-109 (265)
18 TIGR03711 acc_sec_asp3 accesso 32.6 1.1E+02 0.0024 26.1 5.3 53 149-209 61-113 (135)
19 PF15043 CNRIP1: CB1 cannabino 31.8 2.2E+02 0.0047 25.2 7.1 50 115-164 5-55 (161)
20 COG2372 CopC Uncharacterized p 30.0 1.5E+02 0.0032 25.3 5.5 77 158-246 50-126 (127)
21 cd00916 Npc2_like Niemann-Pick 26.1 3.5E+02 0.0077 21.8 9.8 88 145-239 22-120 (123)
22 smart00697 DM8 Repeats found i 21.7 2.1E+02 0.0045 21.0 4.6 40 202-244 53-92 (93)
23 PF10666 Phage_Gp14: Phage pro 21.2 55 0.0012 28.1 1.4 15 86-100 27-41 (140)
24 PF00379 Chitin_bind_4: Insect 20.2 2.1E+02 0.0046 19.6 4.0 28 207-240 18-45 (52)
No 1
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-81 Score=540.89 Aligned_cols=196 Identities=52% Similarity=0.811 Sum_probs=188.9
Q ss_pred cccccccCCCCCCCccccccccCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCC
Q 025461 49 MSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS 128 (252)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~eg 128 (252)
++|+++.|+.+.++++|++.+.+|++||||||+||+++|+||||||||||+|||.++ .+++|++|+|+|.+|+|+|+|
T Consensus 1 ms~~~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~ 78 (200)
T KOG3205|consen 1 MSEKESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEG 78 (200)
T ss_pred CCccccccccCCCcccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCC
Confidence 468889999999999888888999999999999999999999999999999999988 577899999999999999999
Q ss_pred CCCeEEeCCCCCCC--CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCC
Q 025461 129 RPDIVLSVPENGRP--KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206 (252)
Q Consensus 129 r~~i~ldL~~~~~~--k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp 206 (252)
|||++|+|++++.+ ++++|+||||++|+|+|+|+|||||||||||+|+|||.||+|||+..|||||+|++|+|+|.+|
T Consensus 79 r~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p 158 (200)
T KOG3205|consen 79 RPPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTP 158 (200)
T ss_pred CCCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCC
Confidence 99999999998876 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEec
Q 025461 207 EDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILR 247 (252)
Q Consensus 207 ~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~~ 247 (252)
+|||||||||||+|+|+|+|+|||++ |||+|+|+|.|.+.
T Consensus 159 ~eeAPsGmlaRG~Ys~~skF~DDDk~-~hLe~~w~~~I~K~ 198 (200)
T KOG3205|consen 159 EEEAPSGMLARGSYSAKSKFTDDDKT-CHLEWNWTFDIKKE 198 (200)
T ss_pred cccCCccceeecceeeeeEEecCCCc-eEEEEEEEEEEeec
Confidence 99999999999999999999999999 89999999999873
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=3.4e-77 Score=523.88 Aligned_cols=189 Identities=43% Similarity=0.700 Sum_probs=150.8
Q ss_pred cCCCCCCCccccccccCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCCeEE
Q 025461 55 ENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL 134 (252)
Q Consensus 55 ~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~~i~l 134 (252)
+.+.+.++|++++.+.+|++|++|||+||++||++|||||||||||||.++ .++++++|+|+|++|+|+|+|||||+|
T Consensus 10 ~~~~~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~l 87 (200)
T PF02115_consen 10 QEEQEEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVL 87 (200)
T ss_dssp TCCCCTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEE
T ss_pred ccccccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeee
Confidence 334455677777778899999999999999999999999999999999887 577889999999999999999999999
Q ss_pred eCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCce
Q 025461 135 SVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSG 213 (252)
Q Consensus 135 dL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSG 213 (252)
+|+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||+++.|||||+|++++|+|+||+|+||||
T Consensus 88 dl~~~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG 167 (200)
T PF02115_consen 88 DLTGDLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSG 167 (200)
T ss_dssp ETTS-GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BS
T ss_pred eccCccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCc
Confidence 9998753 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEe
Q 025461 214 FFARGSYSAKSKVSSACSAFCSLCFPVTILIIL 246 (252)
Q Consensus 214 mLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~ 246 (252)
|||||+|+|+|+|+|||++ +||+|+|+|+|++
T Consensus 168 ~laRG~Y~aks~f~DdD~~-~~l~~~w~feI~K 199 (200)
T PF02115_consen 168 MLARGSYTAKSKFVDDDKN-VHLEWEWSFEIKK 199 (200)
T ss_dssp TTT-EEEEEEEEEEETTSS-ECEEEEEEEEEES
T ss_pred eeEeeeeeEEEEEEeCCCc-EEEEEEEEEEEec
Confidence 9999999999999999999 7999999999986
No 3
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=96.22 E-value=0.091 Score=41.65 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=65.8
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-eEeccc----c-ccccc---cC---CC-CC---CeeeeCC-CC
Q 025461 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG-LKVDST----K-MMLGT---FS---PQ-AE---PYTQELP-ED 208 (252)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~G-I~Vdk~----e-~MiGS---Y~---P~-~e---~Y~~~fp-~E 208 (252)
+-.++-|..++|.+.|.+.++..++++..-.++-.| ++|--. . ..... .. |- +. .|++.++ +.
T Consensus 25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~ 104 (134)
T PF02221_consen 25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK 104 (134)
T ss_dssp SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence 456889999999999999999999998877777787 877554 2 23221 11 22 22 2344443 34
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEE
Q 025461 209 TTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILI 244 (252)
Q Consensus 209 eAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I 244 (252)
..|. |+|+++-+++|+++. ..+.|...+.|
T Consensus 105 ~~p~-----~~~~i~~~l~d~~~~-~i~C~~~~v~I 134 (134)
T PF02221_consen 105 IYPP-----GKYTIQWKLTDQDGE-EIACFEFPVKI 134 (134)
T ss_dssp TSSS-----EEEEEEEEEEETTTE-EEEEEEEEEEE
T ss_pred ceee-----EEEEEEEEEEeCCCC-EEEEEEEEeEC
Confidence 4454 599999999999976 46888888776
No 4
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=94.10 E-value=0.64 Score=37.59 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=58.9
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc-c---c---cccCCC-CCC--eeeeCCCCCCCceeeeee
Q 025461 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM-M---L---GTFSPQ-AEP--YTQELPEDTTPSGFFARG 218 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~-M---i---GSY~P~-~e~--Y~~~fp~EeAPSGmLARG 218 (252)
++.|...+|.+.|....++-+|++-.=.++-.||++-.... . + |--=|= +-. |.++ -+-| .++-.|
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~g 99 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPPG 99 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCCc
Confidence 77899999999999998887787766678888988764433 1 1 211122 122 3332 2334 455568
Q ss_pred eeeeeEEEEeCCCCceEEEEEEEE
Q 025461 219 SYSAKSKVSSACSAFCSLCFPVTI 242 (252)
Q Consensus 219 ~Y~akSkFvDDDk~i~hL~~~wsf 242 (252)
+|+++.++.|+|+. ....|.+.|
T Consensus 100 ~y~v~~~l~d~~~~-~i~Ci~~~~ 122 (122)
T cd00917 100 KYTVSARAYTKDDE-EITCLSFSV 122 (122)
T ss_pred eEEEEEEEECCCCC-EEEEEEeeC
Confidence 99999999997776 356665543
No 5
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=91.64 E-value=1.9 Score=33.86 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=52.2
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEec-c--eEeccccc-c---ccccCCCC--CCeeeeCCCCCCCceeeeeee
Q 025461 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT-G--LKVDSTKM-M---LGTFSPQA--EPYTQELPEDTTPSGFFARGS 219 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~-G--I~Vdk~e~-M---iGSY~P~~--e~Y~~~fp~EeAPSGmLARG~ 219 (252)
++-|...+|.+.|...+++-+ | ++.+..+. | |++-.... . +|..=|-. +.|.|.+.- ..|+ .+-+|+
T Consensus 21 ~~~g~~~~i~i~f~~~~~~~~-~-~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~-~v~~-~~P~~~ 96 (118)
T smart00737 21 PVRGKTLTISISFTLNEDISK-L-KVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSL-TVPG-IFPPGK 96 (118)
T ss_pred CCCCCEEEEEEEEEEcccceE-E-EEEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEee-Eccc-cCCCeE
Confidence 378899999999999877655 5 45555444 4 55543222 1 23333432 333333321 1232 555789
Q ss_pred eeeeEEEEeCCCCceEEEEEE
Q 025461 220 YSAKSKVSSACSAFCSLCFPV 240 (252)
Q Consensus 220 Y~akSkFvDDDk~i~hL~~~w 240 (252)
|+++..++|+|+. ....|..
T Consensus 97 ~~v~~~l~d~~~~-~i~C~~~ 116 (118)
T smart00737 97 YTVKWELTDEDGE-ELACINF 116 (118)
T ss_pred EEEEEEEEcCCCC-EEEEEEc
Confidence 9999999998877 3565554
No 6
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=87.89 E-value=8 Score=33.98 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=28.2
Q ss_pred eCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEE
Q 025461 204 ELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILII 245 (252)
Q Consensus 204 ~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~ 245 (252)
..|.=+-| .||.+|+|.++... +.+++ ....++.+|.+.
T Consensus 122 ~lP~~~LP-s~l~~G~Y~i~~~l-~~~g~-~l~C~~~~~sL~ 160 (162)
T cd00258 122 TLPNVDLP-SWLTNGNYRITGIL-MADGK-ELGCGKFTFSLE 160 (162)
T ss_pred ecccccCC-CccCCCcEEEEEEE-CCCCC-EEEEEEEEEEEe
Confidence 45544567 49999999999966 66666 456777777764
No 7
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=84.95 E-value=2.6 Score=36.74 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred EEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeee--eeeEEEE
Q 025461 155 YSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSY--SAKSKVS 227 (252)
Q Consensus 155 Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLARG~Y--~akSkFv 227 (252)
-.-+|.|.|-.++|.++|-+|.++=+|-.+..-..-.|=--|++.. ..|.+| .+..|.-|+ -|.| ..-|.|.
T Consensus 63 V~~~i~Fsvg~~pv~nFRmierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi-~gp~et~sdSfyf 141 (157)
T PF05351_consen 63 VGREIEFSVGDEPVNNFRMIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI-SGPYETKSDSFYF 141 (157)
T ss_dssp EEEEEEEEE-SS-ECCEEEEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH-CTTTTEEEEEEEE
T ss_pred heEEEEEEECceeccccEeeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH-cCCCcceEEEEEE
Confidence 3457999998899999999999999999999999988888898753 456666 334444444 3867 5778899
Q ss_pred eCCCCceEEEEEEEE
Q 025461 228 SACSAFCSLCFPVTI 242 (252)
Q Consensus 228 DDDk~i~hL~~~wsf 242 (252)
+||+-|-|=.-.|.|
T Consensus 142 v~~~Limhnka~y~Y 156 (157)
T PF05351_consen 142 VDDKLIMHNKARYFY 156 (157)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred eCCEEEEEEEEEEec
Confidence 999977777666655
No 8
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=84.73 E-value=11 Score=31.29 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=57.4
Q ss_pred EEEEEEEEee---eeeecceeEEEEEecce--EeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025461 156 SLQFSFQVRN---NIVSGLKYTNTVWKTGL--KVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSAC 230 (252)
Q Consensus 156 ~iki~FkVq~---eIVsGLkY~q~VkR~GI--~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDD 230 (252)
+-.|..+++| .+++.|+..-.|+++|= .+-+.+..-.+.||++. +.|..+++.- -|.=|.|+++.+...++
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~ 118 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK 118 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence 3444455544 47888898888888883 55666666678999986 5555555322 56669999999999999
Q ss_pred CCceEEEEEEEEEEE
Q 025461 231 SAFCSLCFPVTILII 245 (252)
Q Consensus 231 k~i~hL~~~wsf~I~ 245 (252)
++ ||++ =.|.|.
T Consensus 119 ~~-W~f~--k~F~It 130 (140)
T PF11797_consen 119 KT-WTFT--KDFTIT 130 (140)
T ss_pred cE-EEEE--EEEEEC
Confidence 97 5544 355554
No 9
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=80.15 E-value=22 Score=28.42 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=60.2
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccc---cccc------cccCCCC--CCeeeeCCCCCCCcee
Q 025461 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST---KMML------GTFSPQA--EPYTQELPEDTTPSGF 214 (252)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~---e~Mi------GSY~P~~--e~Y~~~fp~EeAPSGm 214 (252)
+=.++-|..++|.+.|..+.++ ..|+-.=.++..||++-.. .-.. +..=|-. +.|+|..... -|+=+
T Consensus 23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~~-v~~~~ 100 (127)
T cd00912 23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTVN-VPEFT 100 (127)
T ss_pred CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEEe-cCccc
Confidence 5568899999999999887665 5556666777789876542 2121 3444543 3555554322 34335
Q ss_pred eeeeeeeeeEEEEeCCCCceEEEEEE
Q 025461 215 FARGSYSAKSKVSSACSAFCSLCFPV 240 (252)
Q Consensus 215 LARG~Y~akSkFvDDDk~i~hL~~~w 240 (252)
+.++.|.++..-+|+|+. ....|..
T Consensus 101 ~P~~~~~v~~~l~~~~~~-~v~C~~~ 125 (127)
T cd00912 101 IPTIEYQVVLEDVTDKGE-VLACAQA 125 (127)
T ss_pred CCCeeEEEEEEEEcCCCC-EEEEEec
Confidence 677899999999998887 3555554
No 10
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=79.68 E-value=39 Score=29.49 Aligned_cols=80 Identities=26% Similarity=0.264 Sum_probs=54.2
Q ss_pred EEEEEEeeeeeecceeEEEEEecceEeccccccccccC--C-CCC----CeeeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025461 158 QFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS--P-QAE----PYTQELPEDTTPSGFFARGSYSAKSKVSSAC 230 (252)
Q Consensus 158 ki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~--P-~~e----~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDD 230 (252)
++.=.|- +-|++=+|+-.|+=.||+|-+...-|=.-. | ..- .++...|+.+.| |+|.++.+-+|.+
T Consensus 59 ~i~~ntg-~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPVepG~f~~~hsq~LPg~tPP------G~Y~lkm~~~d~~ 131 (153)
T KOG4680|consen 59 SISGNTG-ETISEGKYVIEVSYGGIRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYTPP------GSYVLKMTAYDAK 131 (153)
T ss_pred EEecccc-cEeeCCeEEEEEEEeeEEEeeccccccccccCCcCcCceeeeeeEeccCcCCC------ceEEEEEEeecCC
Confidence 3333443 346777888888888999876655443222 1 111 146677777766 7999999999999
Q ss_pred CCceEEEEEEEEEEE
Q 025461 231 SAFCSLCFPVTILII 245 (252)
Q Consensus 231 k~i~hL~~~wsf~I~ 245 (252)
|. ....+.++|.|-
T Consensus 132 ~~-~LTCisfsf~i~ 145 (153)
T KOG4680|consen 132 GK-ELTCISFSFDIG 145 (153)
T ss_pred CC-EEEEEEEEEEee
Confidence 87 467778888886
No 11
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=67.10 E-value=72 Score=26.96 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=61.4
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecccccccc--------ccCCCC--CCee----eeCCCCCCC
Q 025461 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG--------TFSPQA--EPYT----QELPEDTTP 211 (252)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiG--------SY~P~~--e~Y~----~~fp~EeAP 211 (252)
+=.++-|..+.|.+.|.-..+ +.-|+-.=...=.|+++=...+- | ++=|.. +.|. +.+|-..=|
T Consensus 28 pC~l~rg~n~~I~~~f~~~~d-~~~L~~~v~~~~~g~~lP~~~e~-~C~~g~~~~s~CP~~kGet~~Y~~p~slpi~~yP 105 (130)
T cd00915 28 PCSTLKGTNGFIRIKFILRRD-IKELYFNLSLNVNGIEVLTRSEI-ICHGYLDKYSFCGALKGETVYYVGPFSFKGILIP 105 (130)
T ss_pred cccceeCCcEEEEEEEEECcc-cceeEEEEEEEECCccCCCCCcc-cccCCCcccccCCccCCceEEEeeeecccccccC
Confidence 445788999999999988644 77888877778889655533333 4 666653 4444 446655455
Q ss_pred ceeeeeeeeeeeEEEEeCCCCceEEEEEEE
Q 025461 212 SGFFARGSYSAKSKVSSACSAFCSLCFPVT 241 (252)
Q Consensus 212 SGmLARG~Y~akSkFvDDDk~i~hL~~~ws 241 (252)
. |+|.++-..+|+++. ....|+.+
T Consensus 106 ~-----~~y~V~weL~d~~~~-~l~Cf~~t 129 (130)
T cd00915 106 Q-----GQYRCVAELIVENRE-TVACANFT 129 (130)
T ss_pred C-----ccEEEEEEEECCCCC-EEEEEEEE
Confidence 4 699999999998886 35665544
No 12
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=57.93 E-value=29 Score=29.22 Aligned_cols=53 Identities=21% Similarity=0.378 Sum_probs=42.8
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCC
Q 025461 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDT 209 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~Ee 209 (252)
||.|.+|+|++.+.+.. .+--|++.+.- |+..+.|+..-=+...-+|+.|.+.
T Consensus 50 Lk~G~~Y~l~~~~~~~P---~~svylki~F~-----dr~~e~i~~~i~k~~~~~F~yP~~a 102 (128)
T PF15432_consen 50 LKRGHTYQLKFNIDVVP---ENSVYLKIIFF-----DRQGEEIEEQIIKNDSFEFTYPEEA 102 (128)
T ss_pred ecCCCEEEEEEEEEEcc---CCeEEEEEEEE-----ccCCCEeeEEEEecCceEEeCCCCc
Confidence 99999999999999974 46668887766 7888888887777777788887764
No 13
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=57.22 E-value=65 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=22.7
Q ss_pred eeeeeeeeeEEEEeCCCCceEEEEEEEEEE
Q 025461 215 FARGSYSAKSKVSSACSAFCSLCFPVTILI 244 (252)
Q Consensus 215 LARG~Y~akSkFvDDDk~i~hL~~~wsf~I 244 (252)
|+-|.|++.=+.+-.||+. ++=.|+|.+
T Consensus 69 l~~G~YtV~wrvvs~DGH~--~~G~~~F~V 96 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHP--VSGSFSFTV 96 (97)
T ss_dssp --SEEEEEEEEEEETTSCE--EEEEEEEEE
T ss_pred CCCceEEEEEEEEecCCCC--cCCEEEEEE
Confidence 7779999999999999995 777788876
No 14
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=42.57 E-value=1.6e+02 Score=22.75 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEE-EEEecceEecc-cccc
Q 025461 113 LEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTN-TVWKTGLKVDS-TKMM 190 (252)
Q Consensus 113 ~~P~V~I~~L~L~~egr~~i~ldL~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q-~VkR~GI~Vdk-~e~M 190 (252)
.+.++.|.++.+.-.+..+ . .. +.-|..++++|+|++.+ .+.++..-= .-...|..|-. ...+
T Consensus 9 g~~~~~I~~v~i~~~~g~~--~----------~~--~~~ge~~~i~i~~~~~~-~i~~~~~~~~i~~~~g~~v~~~~t~~ 73 (142)
T PF14524_consen 9 GNGEARITSVRILDSDGEP--T----------SS--FESGEPIRIRIDYEVNE-DIDDPVFGFAIRDSDGQRVFGTNTYD 73 (142)
T ss_dssp --SSEEEEEEEEEETTEES-------------SS--EETTSEEEEEEEEEESS--EEEEEEEEEEEETT--EEEEEEHHH
T ss_pred CCCCEEEEEEEEEeCCCCE--e----------eE--EeCCCEEEEEEEEEECC-CCCccEEEEEEEcCCCCEEEEECccc
Confidence 3567889999888743221 1 11 56688899999999954 455555433 33456666543 2333
Q ss_pred ccccCCC--CCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEE---EEEEEEEe
Q 025461 191 LGTFSPQ--AEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCF---PVTILIIL 246 (252)
Q Consensus 191 iGSY~P~--~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~---~wsf~I~~ 246 (252)
.+...+. .+.|++.+ +-|.= |.-|.|.+..-+.++...-..+.+ -++|.|..
T Consensus 74 ~~~~~~~~~~g~~~~~~---~i~~~-L~~G~Y~i~v~l~~~~~~~~~~d~~~~~~~f~V~~ 130 (142)
T PF14524_consen 74 SGFPIPLSEGGTYEVTF---TIPKP-LNPGEYSISVGLGDDSSGGEVLDWIEDALSFEVED 130 (142)
T ss_dssp HT--EEE-TT-EEEEEE---EEE---B-SEEEEEEEEEEETTTEEEEEEEEEEEEEEEEE-
T ss_pred cCccccccCCCEEEEEE---EEcCc-cCCCeEEEEEEEEecCCCCEEEEEECCEEEEEEEC
Confidence 3422222 44555543 23444 888999999999443332122332 23666655
No 15
>PHA00407 phage lambda Rz1-like protein
Probab=39.68 E-value=12 Score=29.57 Aligned_cols=12 Identities=58% Similarity=1.204 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCC
Q 025461 92 SLRRWKEQLLGS 103 (252)
Q Consensus 92 SL~kwKesLLG~ 103 (252)
-|+|||++|+|.
T Consensus 27 tl~rwkaaLIGl 38 (84)
T PHA00407 27 TLRRWKAALIGL 38 (84)
T ss_pred hhHHHHHHHHHH
Confidence 489999999874
No 16
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=35.08 E-value=97 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCCc
Q 025461 209 TTPSGFFARGSYSAKSKVSSACSAF 233 (252)
Q Consensus 209 eAPSGmLARG~Y~akSkFvDDDk~i 233 (252)
..|+++|.-|.|.++-..+|.-|+.
T Consensus 48 ~~~g~~f~~G~t~V~ytA~D~~GN~ 72 (81)
T PF02494_consen 48 HPPGDLFPVGTTTVTYTATDAAGNS 72 (81)
T ss_pred CCCCceEeeceEEEEEEEEECCCCE
Confidence 4567799999999999999999984
No 17
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=33.92 E-value=42 Score=31.16 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=21.0
Q ss_pred CcccccccCCCC---CCCccccccccCccCCcccCHHHHHhcC---CcchHHHHHHHH
Q 025461 48 GMSRQMSENSIS---VTEDEEDDEDRKIELGPQYTLKEQFEKD---KDDESLRRWKEQ 99 (252)
Q Consensus 48 ~~~~~~~~~~~~---~~~~~~~~~~~~yk~~~~ksl~E~~~lD---~eDESL~kwKes 99 (252)
.+.++++-++-. .+.+..++.+..=++..+.|++|+-.++ .||+-|++|+++
T Consensus 52 ~li~k~s~t~~s~l~e~~~~~~~k~~~e~~~~~~~~~e~e~~~~d~eDeefL~~yR~q 109 (265)
T PF02114_consen 52 RLIKKLSSTCRSHLDEEEEKQDQKDSEEKLSEKMSLDELEELEDDEEDEEFLEQYREQ 109 (265)
T ss_dssp S-S-SS-----------SSSS--GGGSS----SS-HHHHHHHCC----HHHHHHHHHH
T ss_pred HHHhhccccccccccccccccchhhhhhhhcccccHhHHhhhhcccccHHHHHHHHHH
Confidence 456666664432 2222222222333456688999887764 345689999987
No 18
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=32.63 E-value=1.1e+02 Score=26.11 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=39.0
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCC
Q 025461 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDT 209 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~Ee 209 (252)
||.|.+|+|.+.+.+.. .|--|++.+.= |+..+-+++.-=+...-+|..|.+.
T Consensus 61 Lk~g~~Y~i~~n~~~~P---~~s~~~ki~F~-----dr~~~ei~~~i~~~~~~~F~yP~~a 113 (135)
T TIGR03711 61 LKRGQTYKLSLNADASP---EGSVYLKITFF-----DRQGEEIGTEIEKDDSIIFIYPDEA 113 (135)
T ss_pred EcCCCEEEEEEeeeeCC---CceEEEEEEEe-----ccCCceeceEEEecCceEEECCCcc
Confidence 99999999999998864 46667776643 6667777777766666677777653
No 19
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=31.79 E-value=2.2e+02 Score=25.18 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=33.4
Q ss_pred CcEEEEEEEEEcC-CCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEe
Q 025461 115 PEVKILSLAIKTP-SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVR 164 (252)
Q Consensus 115 P~V~I~~L~L~~e-gr~~i~ldL~~~~~~k~~~F~IKEGs~Y~iki~FkVq 164 (252)
|..+-.+|+|..+ +..|+-+.+.+.-=-+...++|-=|++|+|.|.||=-
T Consensus 5 ~~~f~vslslk~~pn~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~kP~ 55 (161)
T PF15043_consen 5 PGLFRVSLSLKIQPNDGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTIKPP 55 (161)
T ss_pred CceEEEEEEEEeCCCCCcEEEEecccccCCceEEEEecCCEEEEEEEEcCC
Confidence 4444455666653 4446778874332125678888899999999999864
No 20
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=29.97 E-value=1.5e+02 Score=25.28 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=50.7
Q ss_pred EEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEE
Q 025461 158 QFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLC 237 (252)
Q Consensus 158 ki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~ 237 (252)
.+.| +..|-.|+-+++.+.-.|-.|.....++..-.- ..++.. +.--|.+|.|.+.=+++-.|++. .+
T Consensus 50 ~L~F--se~ve~~fs~~~l~~~d~~~v~t~~~~~~~~~~--~~l~v~------l~~~L~aG~Y~v~WrvvS~DGH~--v~ 117 (127)
T COG2372 50 TLEF--SEGVEPGFSGAKLTGPDGEEVATAGTKLDEQNH--TQLEVP------LPQPLKAGVYTVDWRVVSSDGHV--VK 117 (127)
T ss_pred EEec--CCccCCCcceeEEECCCCCccccCcccccccCC--cEEEec------CcccCCCCcEEEEEEEEecCCcE--ec
Confidence 3555 233556778888888877777666555532210 113322 23358899999999999999996 66
Q ss_pred EEEEEEEEe
Q 025461 238 FPVTILIIL 246 (252)
Q Consensus 238 ~~wsf~I~~ 246 (252)
=.++|.|.+
T Consensus 118 G~~sFsV~~ 126 (127)
T COG2372 118 GSISFSVGA 126 (127)
T ss_pred cEEEEEecC
Confidence 678888754
No 21
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=26.05 E-value=3.5e+02 Score=21.81 Aligned_cols=88 Identities=25% Similarity=0.270 Sum_probs=56.8
Q ss_pred ceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccc----cc--cccccCCCC--CC--eeeeCCCC-CCCce
Q 025461 145 SWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST----KM--MLGTFSPQA--EP--YTQELPED-TTPSG 213 (252)
Q Consensus 145 ~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~----e~--MiGSY~P~~--e~--Y~~~fp~E-eAPSG 213 (252)
.|=+|+-|...+|.|.|.-+.+ +..|+-.=...-.||++-=. .. -.|.-=|=. +. |.+.+|.. ..|
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~v~~~~P-- 98 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLPVLAPYP-- 98 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeeeccccCC--
Confidence 5778999999999999966555 57777776777778775422 10 112333322 23 56656643 345
Q ss_pred eeeeeeeeeeEEEEeCCCCceEEEEE
Q 025461 214 FFARGSYSAKSKVSSACSAFCSLCFP 239 (252)
Q Consensus 214 mLARG~Y~akSkFvDDDk~i~hL~~~ 239 (252)
.++|.++-..+|+++.. ...|.
T Consensus 99 ---~i~~~v~~~L~d~~~~~-~~Cf~ 120 (123)
T cd00916 99 ---GISVTVEWELTDDDGQV-LTCFQ 120 (123)
T ss_pred ---CeEEEEEEEEEcCCCCE-EEEEE
Confidence 46799999999987763 44443
No 22
>smart00697 DM8 Repeats found in several Drosophila proteins.
Probab=21.74 E-value=2.1e+02 Score=20.96 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=28.9
Q ss_pred eeeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEE
Q 025461 202 TQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILI 244 (252)
Q Consensus 202 ~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I 244 (252)
.+.+.++.-|. +|-.|.|.+...|+.++.. ...+...|.+
T Consensus 53 n~~l~~~~~p~-~lP~G~y~~~~~~~~~~~~--~~~~~~~~~~ 92 (93)
T smart00697 53 NFRLDENLLPS-FLPDGDYRLNLTFFFGKIK--VKGRVVYFTL 92 (93)
T ss_pred eeEeCcccCCc-cCCCeeEEEEEEEEcCccc--ceeeEEEEEe
Confidence 34555667784 8889999999999987665 4666565544
No 23
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=21.19 E-value=55 Score=28.10 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.0
Q ss_pred cCCcchHHHHHHHHh
Q 025461 86 KDKDDESLRRWKEQL 100 (252)
Q Consensus 86 lD~eDESL~kwKesL 100 (252)
.--+|||+|||-++-
T Consensus 27 V~~~DE~~rk~~e~~ 41 (140)
T PF10666_consen 27 VSLDDEMRRKWIEAD 41 (140)
T ss_pred eecChHHHHHHHHHH
Confidence 345899999998875
No 24
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=20.24 E-value=2.1e+02 Score=19.62 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=19.5
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEE
Q 025461 207 EDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPV 240 (252)
Q Consensus 207 ~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~w 240 (252)
.++...+--.||+|. |+|+|++. .++.|
T Consensus 18 ~~~~~~~~~v~GsY~----y~~pdG~~--~~V~Y 45 (52)
T PF00379_consen 18 PETEDEGGVVRGSYS----YIDPDGQT--RTVTY 45 (52)
T ss_pred cccCCCCCEEEEEEE----EECCCCCE--EEEEE
Confidence 344455667789997 89999983 55555
Done!