Query 025461
Match_columns 252
No_of_seqs 144 out of 279
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1doa_B RHO GDI 1, protein (GDP 100.0 1.7E-77 6E-82 530.0 18.3 184 61-247 31-216 (219)
2 1ds6_B RHO GDP-dissociation in 100.0 5.9E-77 2E-81 514.1 16.5 175 70-247 1-177 (180)
3 1kmt_A RHO GDP-dissociation in 100.0 2.3E-59 7.7E-64 391.0 15.0 135 112-247 2-138 (141)
4 2ag4_A GM2-AP, ganglioside GM2 93.9 0.37 1.3E-05 40.0 9.5 40 203-245 123-162 (164)
5 1nep_A EPV20, BNPC2, epididyma 89.0 4.4 0.00015 31.9 10.4 96 144-246 25-130 (130)
6 4goj_C Protein UNC-119 homolog 83.4 0.68 2.3E-05 41.5 3.1 128 115-243 84-237 (240)
7 3t5g_B Retinal ROD rhodopsin-s 77.6 3.5 0.00012 34.7 5.3 81 154-237 60-145 (152)
8 1xwv_A DER F II; beta sheets, 75.0 17 0.00058 28.5 8.6 94 144-245 24-128 (129)
9 2r5o_A Putative ATP binding co 57.6 76 0.0026 25.8 11.5 97 113-230 44-149 (188)
10 1xvs_A Protein APAG; MCSG APC2 45.8 73 0.0025 25.4 7.3 61 172-238 42-114 (126)
11 1lyq_A PCOC copper resistance 38.2 70 0.0024 24.3 5.8 29 214-244 75-103 (104)
12 2oxg_Z SOXZ protein; immunoglo 32.9 1.7E+02 0.0057 22.5 8.6 74 150-237 15-102 (108)
13 3h8t_A HMUY; hemophore, bacter 32.7 54 0.0018 28.2 4.8 42 192-244 146-190 (191)
14 3nkg_A Uncharacterized protein 32.3 19 0.00065 30.7 1.8 37 130-166 5-43 (174)
15 4gbs_A Putative lipoprotein; P 28.6 50 0.0017 27.3 3.8 24 218-242 170-196 (200)
16 2bn8_A CEDA, cell division act 22.7 58 0.002 24.6 2.8 38 185-222 13-52 (87)
17 2trc_P Phosducin, MEKA, PP33; 22.6 63 0.0022 26.9 3.4 27 74-100 55-84 (217)
No 1
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=100.00 E-value=1.7e-77 Score=530.00 Aligned_cols=184 Identities=35% Similarity=0.582 Sum_probs=172.6
Q ss_pred CCccccccccCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCC
Q 025461 61 TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPEN 139 (252)
Q Consensus 61 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~-~i~ldL~~~ 139 (252)
.|+++++.+.+|++|++|||+||++|||||||||||||||||.++ ++.++++|+|+|++|+|+|+||| ||+|+|+++
T Consensus 31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~ 108 (219)
T 1doa_B 31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD 108 (219)
T ss_dssp SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence 445556667889999999999999999999999999999998876 46678899999999999999995 599999877
Q ss_pred CCC-CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeee
Q 025461 140 GRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARG 218 (252)
Q Consensus 140 ~~~-k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG 218 (252)
... ++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus 109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG 188 (219)
T 1doa_B 109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG 188 (219)
T ss_dssp CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence 543 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEEeCCCCceEEEEEEEEEEEec
Q 025461 219 SYSAKSKVSSACSAFCSLCFPVTILIILR 247 (252)
Q Consensus 219 ~Y~akSkFvDDDk~i~hL~~~wsf~I~~~ 247 (252)
+|+|+|+|+|||++ +||+|+|+|+|++.
T Consensus 189 ~Y~akSkF~DDD~~-~hL~~eWsfeI~Kd 216 (219)
T 1doa_B 189 SYNIKSRFTDDDRT-DHLSWEWNLTIKKE 216 (219)
T ss_dssp EEEEEEEEECTTCC-CCEEEEEEEEEESS
T ss_pred eeeeeEEEEeCCCc-eEEEEEEEEEEecC
Confidence 99999999999999 89999999999874
No 2
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=100.00 E-value=5.9e-77 Score=514.05 Aligned_cols=175 Identities=34% Similarity=0.533 Sum_probs=167.0
Q ss_pred cCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCC-CCeEEeCCCCCC-CCCceE
Q 025461 70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSR-PDIVLSVPENGR-PKGSWF 147 (252)
Q Consensus 70 ~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr-~~i~ldL~~~~~-~k~~~F 147 (252)
++|++|++|||+||++|||||||||||||||||.++ +++++++|+|+|++|+|+++|| +||+++|+++.. +++.+|
T Consensus 1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f 78 (180)
T 1ds6_B 1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI 78 (180)
T ss_dssp CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence 369999999999999999999999999999999876 5678899999999999999999 889999998753 389999
Q ss_pred EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEE
Q 025461 148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS 227 (252)
Q Consensus 148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFv 227 (252)
+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus 79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~ 158 (180)
T 1ds6_B 79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT 158 (180)
T ss_dssp EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEEEEEEEEec
Q 025461 228 SACSAFCSLCFPVTILIILR 247 (252)
Q Consensus 228 DDDk~i~hL~~~wsf~I~~~ 247 (252)
|||++ +||+|+|+|+|++.
T Consensus 159 DDD~~-~hl~~~wsfeI~Kd 177 (180)
T 1ds6_B 159 DDDKQ-DHLSWEWNLSIKKE 177 (180)
T ss_dssp CTTCC-CCEEEEEEEEEESS
T ss_pred cCCCc-eEEEEEEEEEEeeC
Confidence 99999 89999999999874
No 3
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=100.00 E-value=2.3e-59 Score=391.00 Aligned_cols=135 Identities=33% Similarity=0.579 Sum_probs=128.6
Q ss_pred CCCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc
Q 025461 112 SLEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM 189 (252)
Q Consensus 112 ~~~P~V~I~~L~L~~egr~-~i~ldL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~ 189 (252)
|++|+|+|++|+|+++||| ||+|+|+++.. +++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus 2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~ 81 (141)
T 1kmt_A 2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 81 (141)
T ss_dssp CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence 4678999999999999965 69999998753 399999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEec
Q 025461 190 MLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILR 247 (252)
Q Consensus 190 MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~~ 247 (252)
|||||+|++++|+|+||+|||||||||||+|+|+|+|+|||++ +||+|+|+|+|++.
T Consensus 82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~-~hl~~~w~feI~Kd 138 (141)
T 1kmt_A 82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKT-DHLSWEWNLTIKKD 138 (141)
T ss_dssp EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCC-CSEEEEEEEEEESC
T ss_pred eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCc-EEEEEEEeEEEecC
Confidence 9999999999999999999999999999999999999999999 89999999999874
No 4
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=93.89 E-value=0.37 Score=39.96 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=31.1
Q ss_pred eeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEE
Q 025461 203 QELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILII 245 (252)
Q Consensus 203 ~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~ 245 (252)
+.+|..+.|+ +|..|.|+++..+.|+++.+ ..+...|.|.
T Consensus 123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~~~~~l--~Ci~~~~~l~ 162 (164)
T 2ag4_A 123 FVVPDLELPS-WLTTGNYRIESVLSSSGKRL--GCIKIAASLK 162 (164)
T ss_dssp EEECCCCCCT-TCSSEEEEEEEEEEETTEEE--EEEEEEEEEE
T ss_pred eecCcccccC-ccCCceEEEEEEEecCCCEE--EEEEEEEEEE
Confidence 6677778998 99999999999999977765 5555555553
No 5
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=89.01 E-value=4.4 Score=31.89 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=66.4
Q ss_pred CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEec--ccc-cc--ccccCCCC--CC--eeeeCCC-CCCCce
Q 025461 144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVD--STK-MM--LGTFSPQA--EP--YTQELPE-DTTPSG 213 (252)
Q Consensus 144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vd--k~e-~M--iGSY~P~~--e~--Y~~~fp~-EeAPSG 213 (252)
..|=.|+-|..++|.|.|.-+.+ +++|+-.=.++=.|+++- -.+ .- -|..=|=. +. |.+.+|. ...|.
T Consensus 25 ~~PC~l~rG~~~~i~i~f~~~~~-~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lpV~~~~P~- 102 (130)
T 1nep_A 25 TQPCKLHRGQSYSVNVTFTSNTQ-SQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPS- 102 (130)
T ss_dssp SSSEEEETTCEEEEEEEEEESSC-BSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSCS-
T ss_pred CCCCEEEcCCeEEEEEEEEcccc-cceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeEecccCCC-
Confidence 45778999999999999999877 577777666677888773 111 11 13222422 33 4555552 34554
Q ss_pred eeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEe
Q 025461 214 FFARGSYSAKSKVSSACSAFCSLCFPVTILIIL 246 (252)
Q Consensus 214 mLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~ 246 (252)
++|.++-..+|+++. ....|...+.|++
T Consensus 103 ----~~~~v~~~L~d~~~~-~l~C~~~~~~I~~ 130 (130)
T 1nep_A 103 ----IKVVVEWELTDDKNQ-RFFCWQIPIEVEA 130 (130)
T ss_dssp ----SEEEEEEEEECTTSC-EEEEEEEEEEEEC
T ss_pred ----ccEEEEEEEEcCCCC-EEEEEEEeEEEEC
Confidence 679999999999987 4788888888874
No 6
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=83.39 E-value=0.68 Score=41.49 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=84.8
Q ss_pred CcEEEEEEEEEcCCCCCeEEeCCCCCCCC-----CceEEeccC--CeEEEE------------EEEEEeeeeeecceeEE
Q 025461 115 PEVKILSLAIKTPSRPDIVLSVPENGRPK-----GSWFTLKEG--SRYSLQ------------FSFQVRNNIVSGLKYTN 175 (252)
Q Consensus 115 P~V~I~~L~L~~egr~~i~ldL~~~~~~k-----~~~F~IKEG--s~Y~ik------------i~FkVq~eIVsGLkY~q 175 (252)
-++.+.+|.|-=-....+-+++..+.... ...+---.| +.|++. |.|.|-.++|.+||-+|
T Consensus 84 y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiE 163 (240)
T 4goj_C 84 YKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIE 163 (240)
T ss_dssp TCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEE
T ss_pred cCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeee
Confidence 36778888887544444445543221100 001111123 457765 99999888999999999
Q ss_pred EEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeeee--eeEEEEeCCCCceEEEEEEEEE
Q 025461 176 TVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSYS--AKSKVSSACSAFCSLCFPVTIL 243 (252)
Q Consensus 176 ~VkR~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLARG~Y~--akSkFvDDDk~i~hL~~~wsf~ 243 (252)
.++=+|.-+..-.+-.|=--|+... ..|.+| .+..|.-|+. |.|- ..|.|.+||+-|-|=.-+|+|+
T Consensus 164 RhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~-~p~Et~sdSFYFvddkLvMHNKAdY~Y~ 237 (240)
T 4goj_C 164 RHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR-HPYETQSDSFYFVDDRLVMHNKADYSYS 237 (240)
T ss_dssp EEEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHH-STTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hhhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHh-CCCceeeeeeEEECCEEEEcchhhcccC
Confidence 9999999999999999988898753 466666 3344555555 8884 3466668898777888888774
No 7
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=77.55 E-value=3.5 Score=34.69 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred eEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCCCC--CCCceeeeeeeeeeeEEEEe
Q 025461 154 RYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELPED--TTPSGFFARGSYSAKSKVSS 228 (252)
Q Consensus 154 ~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp~E--eAPSGmLARG~Y~akSkFvD 228 (252)
.-.-+|.|.| .++|.++|-+|.++=+|-.+..-.+-.|=-.|+... ..|.+|++ --|. -..-|.-.+.++|+|
T Consensus 60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa-~~lsGnv~IeT~f~d 137 (152)
T 3t5g_B 60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA-SVLTGNVIIETKFFD 137 (152)
T ss_dssp EEEEEEEEEE-SSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCH-HHHTTTEEEEEEEEE
T ss_pred hheEEEEEec-cccccccEEEEEEEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCH-hHcCCcEEEEEEEec
Confidence 3455889999 799999999999999999999988888888898753 35555533 2232 223599999999999
Q ss_pred CCCCceEEE
Q 025461 229 ACSAFCSLC 237 (252)
Q Consensus 229 DDk~i~hL~ 237 (252)
+|.-+ +..
T Consensus 138 ~d~li-~~s 145 (152)
T 3t5g_B 138 DDLLV-STS 145 (152)
T ss_dssp TTEEE-EEE
T ss_pred CCEEE-EEe
Confidence 99863 443
No 8
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=75.04 E-value=17 Score=28.48 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=65.2
Q ss_pred CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecc--ccccccccC--CC--CCCe--eeeCCC-CCCCcee
Q 025461 144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDS--TKMMLGTFS--PQ--AEPY--TQELPE-DTTPSGF 214 (252)
Q Consensus 144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk--~e~MiGSY~--P~--~e~Y--~~~fp~-EeAPSGm 214 (252)
..|=.|+-|..++|.+.|.-+.+ ++.|+-.=.++=.|+++.= ...-.=++. |= .+.| .+.+|. ...|.
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~v~~~~P~-- 100 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPK-- 100 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEECCTTSCC--
T ss_pred CCCCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeEecccCCC--
Confidence 45788999999999999998777 7899988888888988731 110000111 22 1334 444653 34554
Q ss_pred eeeee-eeeeEEEEeCCCCceEEEE-EEEEEEE
Q 025461 215 FARGS-YSAKSKVSSACSAFCSLCF-PVTILII 245 (252)
Q Consensus 215 LARG~-Y~akSkFvDDDk~i~hL~~-~wsf~I~ 245 (252)
++ |.++-..+||++. ...| ...+.|+
T Consensus 101 ---v~~~~v~~~L~d~~~~--l~Cf~~~~~~I~ 128 (129)
T 1xwv_A 101 ---SENVVVTVKLVGDNGV--LACAIATHAKIR 128 (129)
T ss_dssp ---BSCEEEEEEEEETTEE--EEEEEECCEEEE
T ss_pred ---CceEEEEEEEEcCCCc--EEEEecccEEEe
Confidence 57 9999999999884 5887 8888876
No 9
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=57.56 E-value=76 Score=25.81 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEe-cceEeccccccc
Q 025461 113 LEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK-TGLKVDSTKMML 191 (252)
Q Consensus 113 ~~P~V~I~~L~L~~egr~~i~ldL~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR-~GI~Vdk~e~Mi 191 (252)
.+..+.|.++.|.-.+..++ . ++.-|..++|+|.|++..+ +..+..-=.+|. .|..|--...+.
T Consensus 44 Gsg~a~I~~v~l~d~~G~~~--~------------~~~~Ge~v~l~i~~~~~~~-i~~~v~G~~Ik~~~G~~I~g~nT~~ 108 (188)
T 2r5o_A 44 GQGGAKIIDYHIQSAGVDFP--P------------SLTGNQQTDFLMKVVFEYD-FDCVVPGILIKTLDGLFLYGTNSFL 108 (188)
T ss_dssp CCCSEEEEEEEEEETTEESC--S------------SEETTCEEEEEEEEEESSC-EEEEEEEEEEEETTCCEEEEEEHHH
T ss_pred CCCcEEEEEEEEEECCCCEe--e------------EEeCCCEEEEEEEEEECCc-CCccEEEEEEECCCCCEEEecCccc
Confidence 34678899998876432221 1 1566788888999999754 445544334443 488776555433
Q ss_pred cccCC-----CCCC-e--eeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025461 192 GTFSP-----QAEP-Y--TQELPEDTTPSGFFARGSYSAKSKVSSAC 230 (252)
Q Consensus 192 GSY~P-----~~e~-Y--~~~fp~EeAPSGmLARG~Y~akSkFvDDD 230 (252)
-...+ ++.. + .|.|| . .|.-|.|.+..-+.+.+
T Consensus 109 ~~~~~~~~~~~~G~~~~v~f~f~---l---~L~~G~Y~lsv~i~~~~ 149 (188)
T 2r5o_A 109 ASEGRENISVSRGDVRVFKFSLP---V---DLNSGDYLLSFGISAGN 149 (188)
T ss_dssp HTTTCCCEEECTTCEEEEEEEEE---C---CBCSEEEEEEEEEEEEE
T ss_pred ccccccccccCCCCEEEEEEEEe---c---ccCCCeEEEEEEEecCC
Confidence 22222 2222 2 34444 2 48889999999988866
No 10
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=45.82 E-value=73 Score=25.43 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=38.6
Q ss_pred eeEEEEEecceEecc--------ccccccccC---CCCCCeeeeCC-CCCCCceeeeeeeeeeeEEEEeCCCCceEEEE
Q 025461 172 KYTNTVWKTGLKVDS--------TKMMLGTFS---PQAEPYTQELP-EDTTPSGFFARGSYSAKSKVSSACSAFCSLCF 238 (252)
Q Consensus 172 kY~q~VkR~GI~Vdk--------~e~MiGSY~---P~~e~Y~~~fp-~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~ 238 (252)
.=+|...|+=+--|. -+-.+|.++ |.. .|+|+.- .=.+|.| ..+|+|.. +++|+..+...+
T Consensus 42 ~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~f~YtSg~~L~tp~G-~M~G~y~m----~~~~G~~F~v~I 114 (126)
T 1xvs_A 42 QTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-EYTYSSGTALDTPVG-VMQGQYLM----IDEQGESFTVEI 114 (126)
T ss_dssp SCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-EEEEEEEEEESSSEE-EEEEEEEE----ECTTSCEEEEEE
T ss_pred CCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCC-ceEEeCCcCcCCCcE-EEEEEEEE----EECCCCEEEEEC
Confidence 345666666544342 244678777 554 6777654 3467999 66899996 578887545544
No 11
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=38.25 E-value=70 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=24.6
Q ss_pred eeeeeeeeeeEEEEeCCCCceEEEEEEEEEE
Q 025461 214 FFARGSYSAKSKVSSACSAFCSLCFPVTILI 244 (252)
Q Consensus 214 mLARG~Y~akSkFvDDDk~i~hL~~~wsf~I 244 (252)
-|.-|.|++.=+.+-.|+|. .+=.|+|.+
T Consensus 75 ~L~~G~YtV~WrvvS~DGH~--~~G~~~FtV 103 (104)
T 1lyq_A 75 PLPAGTYRVDWRAVSSDTHP--ITGNYTFTV 103 (104)
T ss_dssp CCCSEEEEEEEEECCTTSCC--EEEEEEEEE
T ss_pred CCCCceEEEEEEEEecCCCc--cCCEEEEEE
Confidence 47789999999999999995 676777765
No 12
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=32.85 E-value=1.7e+02 Score=22.50 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=45.2
Q ss_pred ccCCeEEEEEEEEEeeeeeecce-----------eEEEEEecceEeccccccccccCCC--CCCe-eeeCCCCCCCceee
Q 025461 150 KEGSRYSLQFSFQVRNNIVSGLK-----------YTNTVWKTGLKVDSTKMMLGTFSPQ--AEPY-TQELPEDTTPSGFF 215 (252)
Q Consensus 150 KEGs~Y~iki~FkVq~eIVsGLk-----------Y~q~VkR~GI~Vdk~e~MiGSY~P~--~e~Y-~~~fp~EeAPSGmL 215 (252)
+.|...++++ .|.|---+||+ |+|.+.= ..+-...+=-..+|. .+|| .|.|...++
T Consensus 15 ~~g~~~~vk~--~I~HPMetGl~~d~~g~~IPa~~I~~v~~---~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~~----- 84 (108)
T 2oxg_Z 15 KAGETVTVKA--LISHKMESGQRKDADGKLIPRSIINRFTC---ELNGVNVVDVAIDPAVSTNPYFEFDAKVDAA----- 84 (108)
T ss_dssp CTTEEEEEEE--EECCCCBCSCCBCTTSCBCCCBCEEEEEE---EETTEEEEEEEECTTBCSSCEEEEEEEECSS-----
T ss_pred cCCCCEEEEE--EeECCCccccccCcCCCccchHheEEEEE---EECCEEEEEEEeCCccccCCeEEEEEecCCC-----
Confidence 4566555554 68998889866 7777642 222222332344444 4677 777665433
Q ss_pred eeeeeeeeEEEEeCCCCceEEE
Q 025461 216 ARGSYSAKSKVSSACSAFCSLC 237 (252)
Q Consensus 216 ARG~Y~akSkFvDDDk~i~hL~ 237 (252)
| ..+...+|++|..+..+
T Consensus 85 --g--~l~v~~~Dn~G~~~~~~ 102 (108)
T 2oxg_Z 85 --G--EFKFTWYDDDGSVYEDV 102 (108)
T ss_dssp --E--EEEEEEEETTSCEEEEE
T ss_pred --c--EEEEEEEECCCCEEEEE
Confidence 4 56789999999864433
No 13
>3h8t_A HMUY; hemophore, bacterial virulence factor, heme-binding protein, periodontitis; HET: HEM; 1.80A {Porphyromonas gingivalis}
Probab=32.69 E-value=54 Score=28.16 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=29.6
Q ss_pred cccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEE---EeCCCCceEEEEEEEEEE
Q 025461 192 GTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKV---SSACSAFCSLCFPVTILI 244 (252)
Q Consensus 192 GSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkF---vDDDk~i~hL~~~wsf~I 244 (252)
..|.|+...|..++.. |+| ++.+| +++.++-+|++|+|.|..
T Consensus 146 p~~~~s~~vyvik~~d----------G~y-aKlq~~syyn~~G~~gy~tF~Y~y~~ 190 (191)
T 3h8t_A 146 PTYKLSKRVFFVRGAD----------GNI-AKVQFTDYQDAELKKGVITFTYTYPV 190 (191)
T ss_dssp EEEEECCCEEEEECTT----------SCE-EEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred CEeccCCeEEEEEeCC----------CCE-EEEEEEEEEcCCCccceEEEEEecCC
Confidence 3566777777666433 675 56554 678887799999999864
No 14
>3nkg_A Uncharacterized protein GEBA250068378; GEBA target, BATA-fold, structural genomics, PSI-2, protein initiative; 2.00A {Sulfurospirillum deleyianum}
Probab=32.27 E-value=19 Score=30.74 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCeEE--eCCCCCCCCCceEEeccCCeEEEEEEEEEeee
Q 025461 130 PDIVL--SVPENGRPKGSWFTLKEGSRYSLQFSFQVRNN 166 (252)
Q Consensus 130 ~~i~l--dL~~~~~~k~~~F~IKEGs~Y~iki~FkVq~e 166 (252)
.+|.+ +|++.++.-...|.|.|--.|.+.+.|.|+.+
T Consensus 5 ~pi~~pidlsqagsv~e~e~~i~e~~~y~l~l~F~v~dr 43 (174)
T 3nkg_A 5 NPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDR 43 (174)
T ss_dssp CCEEEEECTTSTTEEEEEEEEECSSEEEEEEEEECCCCT
T ss_pred CceeeecChhhCcceeeeeeecccceeeeEEEEEEEccC
Confidence 34554 45667766778999999999999999999765
No 15
>4gbs_A Putative lipoprotein; PF14064 family, transport, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MLY; 2.48A {Bacteroides fragilis}
Probab=28.55 E-value=50 Score=27.28 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=18.0
Q ss_pred eeeeeeEE---EEeCCCCceEEEEEEEE
Q 025461 218 GSYSAKSK---VSSACSAFCSLCFPVTI 242 (252)
Q Consensus 218 G~Y~akSk---FvDDDk~i~hL~~~wsf 242 (252)
|+| ||.+ |+++.++-+|++|+|-|
T Consensus 170 G~Y-aKlq~~syyn~~g~~g~~tF~Y~y 196 (200)
T 4gbs_A 170 DTM-AAIRLVSYMNAAGIXGYMTFDYIY 196 (200)
T ss_dssp SCE-EEEEEEEEECTTCCEEEEEEEEES
T ss_pred CCE-EEEEEEEeECCCCceeeEEEEEEe
Confidence 776 5555 46677777999999976
No 16
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=22.75 E-value=58 Score=24.59 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=21.6
Q ss_pred ccccccccccCCCCCCe--eeeCCCCCCCceeeeeeeeee
Q 025461 185 DSTKMMLGTFSPQAEPY--TQELPEDTTPSGFFARGSYSA 222 (252)
Q Consensus 185 dk~e~MiGSY~P~~e~Y--~~~fp~EeAPSGmLARG~Y~a 222 (252)
...+.-|-||-|+.|+- ++..-.+.--.-|+.||+|-|
T Consensus 13 rqqnrpvisyvprvepapp~ha~kmd~frdvw~lrgkyva 52 (87)
T 2bn8_A 13 RQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVA 52 (87)
T ss_dssp --------CCCCCCCCBTTBSCBCTTTCTTEEEETTEEEE
T ss_pred HhcCCcceeeccCCCCCCchHhhhcccchhheeeccceEE
Confidence 34455677999999863 333344444556899999987
No 17
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=22.59 E-value=63 Score=26.94 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=20.7
Q ss_pred CCcccCHHHHHhcC---CcchHHHHHHHHh
Q 025461 74 LGPQYTLKEQFEKD---KDDESLRRWKEQL 100 (252)
Q Consensus 74 ~~~~ksl~E~~~lD---~eDESL~kwKesL 100 (252)
...++||+|+-.++ .+|+-|++|.++=
T Consensus 55 ~~~~~~~~e~~~~~~d~~d~~fl~~~r~~R 84 (217)
T 2trc_P 55 MSRKMSIQEYELIHQDKEDEGCLRKYRRQC 84 (217)
T ss_dssp CCCSSCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred hhccCChhhhhhhccccccHHHHHHHHHHH
Confidence 45689999988776 5677899987763
Done!