BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025462
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit
TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1
Length = 269
Score = 291 bits (744), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 175/198 (88%)
Query: 52 DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 111
++R N + RSFAS+TSK+ ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct: 72 EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131
Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 171
SYSL+ILAGLGVAGAA Y VFKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct: 132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191
Query: 172 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIV 231
E+RNRAARQRIPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIV
Sbjct: 192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIV 251
Query: 232 EITSPYKAQLMLESYMPA 249
EI +P A+LMLESY+PA
Sbjct: 252 EILTPSPAKLMLESYLPA 269
>sp|Q3SZV6|TIM21_BOVIN Mitochondrial import inner membrane translocase subunit Tim21
OS=Bos taurus GN=TIMM21 PE=2 SV=1
Length = 244
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 171
+Y +++L G+ + G Y +F+EL KI+ KAL++ + +V G P+ GYG+
Sbjct: 109 TYLIVVLIGISITGGLFYTIFRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGE 168
Query: 172 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 229
+R R RQ + Y + G++H+ V FYI+G P G V E+ ++ E +++F Y+
Sbjct: 169 VTR-RGRRQLVSFIEYKKD-GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYI 226
Query: 230 IVEITSPYKAQLMLE 244
VE+ PY +++E
Sbjct: 227 FVEL-EPYSRTIVVE 240
>sp|Q5XKA2|TIM21_XENLA Mitochondrial import inner membrane translocase subunit Tim21
OS=Xenopus laevis GN=timm21 PE=2 SV=1
Length = 232
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 61 YCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAG 120
+C+ R ++ G + K +S AP N K +Y +++L G
Sbjct: 51 FCAERPIST-----GCTSLQVKDKRVSVQSTSDGAPPQNASHKVKEAGRDFTYFIVVLIG 105
Query: 121 LGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQ 180
+GV G Y VF+EL KI+ +AL++ + +V G PI GYG+ +R R RQ
Sbjct: 106 IGVTGGLFYVVFEELFSSSSPSKIYGEALEKCRSHPEVIGAFGEPIKGYGETTR-RGRRQ 164
Query: 181 RIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYK 238
+ + + + GI+ + + FYI G P G V E+ ++ +++F Y+ VEI + +
Sbjct: 165 HVSHMEFVKD-GIKCMRLKFYIEGSEPRKQGTVHIEVKENPASGKYEFQYIFVEIDTYPR 223
Query: 239 AQLMLE 244
+++E
Sbjct: 224 RTIIIE 229
>sp|Q9BVV7|TIM21_HUMAN Mitochondrial import inner membrane translocase subunit Tim21
OS=Homo sapiens GN=TIMM21 PE=1 SV=1
Length = 248
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 171
+Y +++L G+ + G Y +FKEL KI+ +AL++ + +V G + GYG+
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGE 168
Query: 172 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 229
+R R RQ + Y + G++H V FYI G P G V+ ++ ++ ++ F Y+
Sbjct: 169 VTR-RGRRQHVRFTEYVKD-GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYI 226
Query: 230 IVEITSPYKAQLMLE 244
VEI S + +++E
Sbjct: 227 FVEIESYPRRTIIIE 241
>sp|Q5U2X7|TIM21_RAT Mitochondrial import inner membrane translocase subunit Tim21
OS=Rattus norvegicus GN=Timm21 PE=2 SV=1
Length = 245
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 111 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 170
+Y +++L G+ + G+ Y +FKEL I+ KAL + + +V G P+ GYG
Sbjct: 107 VTYLIVVLFGVSITGSLLYTIFKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYG 166
Query: 171 QESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTY 228
+ SR R RQ + Y + G++ + V FYI G P G V E+ ++ Q+ F Y
Sbjct: 167 EMSR-RGRRQHVSFTEYANN-GLKRIRVKFYIEGSEPGKQGTVHAEVEENPRSGQFDFRY 224
Query: 229 LIVEI 233
+ V++
Sbjct: 225 IFVDV 229
>sp|Q4X1I8|TIM21_ASPFU Mitochondrial import inner membrane translocase subunit tim21
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=tim21 PE=3 SV=1
Length = 237
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 102 EKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKI-FNKALKRIQDDGQVRV 160
EK T+ + L+I+AG + G Y ++ E +F P F KA++RI+DD +
Sbjct: 74 EKVARATQQSLNFLVIVAGAVLTGGVFYLLYTE-VFSPNSRTWQFEKAVQRIKDDPRCTD 132
Query: 161 RIGS--PITGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFK 217
+G I YG+ + +R R R I ++ D G EH++++F++ GP +G V M K
Sbjct: 133 LLGDRREIKAYGESTGSRWERNRPIATSMFKDRQGREHMKMHFHVEGPLNSGIVIVHMMK 192
Query: 218 DKEDKQWKFTYLIVEI 233
+ +W++ L +++
Sbjct: 193 PLDKDEWEYLLLALDV 208
>sp|Q7S8S5|TIM21_NEUCR Mitochondrial import inner membrane translocase subunit tim-21
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-21 PE=3 SV=1
Length = 251
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP-----I 166
++ L+IL G+ + G AY +F ++ + FN+A+ RI+ D + V + SP I
Sbjct: 92 NFGLVIL-GVVLTGGIAYLLFTDVFSPESKTAYFNRAVDRIRADPRC-VALLSPGDPKKI 149
Query: 167 TGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWK 225
+G+E+ N+ R R I V D G+EH++++F++ GP G+G V + K+ W+
Sbjct: 150 AAHGEETHNKWRRARPIAATVEKDNRGVEHLKMHFHVEGPRGSGVVGLHL--TKQPGHWE 207
Query: 226 FTY 228
Y
Sbjct: 208 HEY 210
>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM21 PE=3 SV=1
Length = 269
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 106 TFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP 165
F + + Y IILA LG+ G Y + EL+ + +IFN+A K I+ + V +G
Sbjct: 102 VFFQLSWYLGIILAALGLFGLVWYYLIMELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQ 161
Query: 166 ITGYGQESRNRAARQRIP-NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK-- 222
++ G+ R R + P ++ D++G EH+ +NFY+ G G+ E+ ++ + K
Sbjct: 162 LSSMGEGGGGRWGRNQPPVSKRGIDKYGREHIWMNFYVSGDINEGRAKLELVQNTDSKLS 221
Query: 223 --QWKFTYLIVEI 233
++ + Y +V+I
Sbjct: 222 SERFVYRYFVVDI 234
>sp|Q4HZ95|TIM21_GIBZE Mitochondrial import inner membrane translocase subunit TIM21
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=TIM21 PE=3 SV=1
Length = 229
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 59 KTYCSARSFASKTSKQGT-ETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSL-- 115
+ + ++R +A++ QG T PK+ T PF+ + +P K ++ E A+ +
Sbjct: 23 RPFLASRYYATQ---QGLGATPRGPKRRAVT---PFNDNGH-VPWKQLSVAEKAARATQQ 75
Query: 116 -----IILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP--ITG 168
+IL GL + G Y ++ ++ + FN+A+ +I+ D ++ +G I
Sbjct: 76 SFNFGMILVGLMLTGGVGYFLWTDVFSPDSKISNFNRAVDKIRSDPRIIDVMGDSKKIAA 135
Query: 169 YGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 227
+G E+ N+ R R + + TD G +H+ ++FY+ GP G M K + +++
Sbjct: 136 HGDETFNKWRRARPVASSETTDARGDQHIMMHFYVEGPKNNGVARLHMIKYRGHSDFEYK 195
Query: 228 YLIVEI 233
YL V++
Sbjct: 196 YLFVDV 201
>sp|O94618|TIM21_SCHPO Mitochondrial import inner membrane translocase subunit tim21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim21 PE=3 SV=1
Length = 223
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 111 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 170
++S++I G GV G YA+ + Y ++A + ++ + + R G + G
Sbjct: 71 GNFSIVIFGG-GVFGLIIYALVTSIWKGEAHYG--DEAFELLKANEECRYVFGDHMKALG 127
Query: 171 QESR-NRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 229
+ + R + +RV+ D G+EH+ + F++ G G VF + + D +W+ YL
Sbjct: 128 EATHPLRRTHGILTSRVW-DHHGVEHLVLQFHLIGNERKGHVFGRLVNVQGDYKWE--YL 184
Query: 230 IVEITS 235
V++ +
Sbjct: 185 FVDVAN 190
>sp|Q8CCM6|TIM21_MOUSE Mitochondrial import inner membrane translocase subunit Tim21
OS=Mus musculus GN=Timm21 PE=2 SV=1
Length = 249
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 111 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQV 158
SY +++L G+G+ G YA+FKEL F I+ KAL + + +V
Sbjct: 106 VSYLIVVLFGVGLTGGLLYAIFKELFFSSSPNIIYGKALGKCRTHPEV 153
>sp|Q75CX4|TIM21_ASHGO Mitochondrial import inner membrane translocase subunit TIM21
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM21 PE=3 SV=1
Length = 234
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 115 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVR--------VRIGSPI 166
+++L GVAG Y + EL + +IFN+A+ ++ D R V +
Sbjct: 75 MLVLGAAGVAGIVLYLILSELFSPSGDTQIFNRAVSTVEGDAVARSLLQCEDGVHRSERL 134
Query: 167 TGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQW 224
YG +R R R I + D G EH + F++ G V E + + Q
Sbjct: 135 KAYGDSVGDDRWTRNRPISSTRRLDASGREHYYMRFHVETGRRRGVVSLEAQQSDDSYQP 194
Query: 225 KFTYLIVEI 233
+F + +++
Sbjct: 195 EFVRMYLDV 203
>sp|Q6CW96|TIM21_KLULA Mitochondrial import inner membrane translocase subunit TIM21
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM21
PE=3 SV=1
Length = 234
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 107 FTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPI 166
FT ++++ G+AG Y + EL + +IFN+A+ ++++D R +
Sbjct: 67 FTTFTFSGILVIGATGLAGVVIYLIGAELFSPSGDTQIFNRAVSKVENDEVARRLLKCND 126
Query: 167 T--------GYGQ-ESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMF 216
T YG+ + +R R R I + D+ G EH + F++ G V E
Sbjct: 127 TETSTERLKAYGEILTDDRWTRNRPISSTRRIDKEGKEHYLMRFHVESKQKMGIVHVEAK 186
Query: 217 KDKEDKQWKFTYLIVEI 233
+ + Q F + ++I
Sbjct: 187 ESDVNYQPDFVSMYLDI 203
>sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 OS=Caenorhabditis elegans GN=K12D12.1
PE=3 SV=2
Length = 1520
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I +ED DA T N + + TEG S + ++GL V G Y VF P K
Sbjct: 471 KGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVF------PLRGK 524
Query: 144 IFN---KALKRIQDDGQVRVRI 162
+ N +K+I D+ +V I
Sbjct: 525 LLNVREGNMKQIADNAEVNAMI 546
>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1
Length = 1526
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA + N E + TEG S + ++GLGV G Y VF P K
Sbjct: 434 KGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 487
Query: 144 IFN 146
I N
Sbjct: 488 ILN 490
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1
Length = 1526
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA + N E + TEG S + ++GLGV G Y VF P K
Sbjct: 435 KGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 488
Query: 144 IFN 146
I N
Sbjct: 489 ILN 491
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2
Length = 1528
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA + N E + TEG S + ++GLGV G Y VF P K
Sbjct: 435 KGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 488
Query: 144 IFN 146
I N
Sbjct: 489 ILN 491
>sp|Q6BVK1|TIM21_DEBHA Mitochondrial import inner membrane translocase subunit TIM21
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM21 PE=3 SV=2
Length = 277
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 114 SLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVR----VRIGSPITGY 169
S+I+L ++ Y + EL + + FNKA++ ++ + + G + +
Sbjct: 111 SVIVLGATCISVLVVYLILSELFLPSGDTRTFNKAVRMLESNELAHEALGFKKGQRVKAH 170
Query: 170 GQESRNRAARQRIPNRVYT-DEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTY 228
G++ ++ AR R V T G +++ + F + P +GK T + + W +
Sbjct: 171 GEQHADKWARNRPAQSVRTRGADGKDYLFMKFQVESP--SGKYGTVTLEQVDRTFWSSEF 228
Query: 229 LIVEITSP 236
L + + P
Sbjct: 229 LYIALDMP 236
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3
Length = 1531
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA N E + TEG S + ++GLGV G Y VF P K
Sbjct: 436 KGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 489
Query: 144 IFN 146
I N
Sbjct: 490 ILN 492
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA N E + TEG S + ++GLGV G Y VF P K
Sbjct: 436 KGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 489
Query: 144 IFN 146
I N
Sbjct: 490 ILN 492
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 /
Thailand) GN=TOP2 PE=3 SV=1
Length = 1398
Score = 35.0 bits (79), Expect = 0.56, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 70 KTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAY 129
K K G+ + E I +ED DA + E + TEG S LAGL + G Y
Sbjct: 460 KKMKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKY 519
Query: 130 AVFKELIFEPKEYKIFNKALKRIQDDGQVR 159
VF + K + + + K++ D+ +++
Sbjct: 520 GVFP---LKGKLLNVRDASFKQLMDNKEIQ 546
>sp|Q5REP2|TIM21_PONAB Mitochondrial import inner membrane translocase subunit Tim21
OS=Pongo abelii GN=TIMM21 PE=2 SV=1
Length = 172
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 112 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVR 159
+Y +++L G+ + G Y +FKEL KI+ +AL++ + + R
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEGR 156
>sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1
Length = 1547
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVF 132
K I +ED DA T N + TEG S + ++GL V G Y VF
Sbjct: 444 KGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVF 492
>sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2A PE=2 SV=2
Length = 1553
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVF 132
K + ++D DA + N + + TEG S + ++GLGV G Y VF
Sbjct: 437 KGVPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVF 485
>sp|P34534|TOP2M_CAEEL Putative DNA topoisomerase 2, mitochondrial OS=Caenorhabditis
elegans GN=R05D3.12 PE=3 SV=5
Length = 1170
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 75 GTETSSEPKKDISTVEDPFDAPTYNIPEK-PVTFTEGASYSLIILAGLGVAGAAAYAVF 132
G S +DI +ED A EK + TEG S + LAGL V G Y VF
Sbjct: 446 GKRVSVSSVRDIVKLEDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVF 504
>sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster GN=Top2 PE=1 SV=1
Length = 1447
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 72 SKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAV 131
+K G SS+ K I +ED +A N + + TEG S + ++GLGV G Y V
Sbjct: 405 AKTGGRKSSKIK-GIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGV 463
Query: 132 F 132
F
Sbjct: 464 F 464
>sp|P90520|TOP2M_DICDI DNA topoisomerase 2, mitochondrial OS=Dictyostelium discoideum
GN=top2mt PE=2 SV=2
Length = 1284
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 72 SKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAV 131
S G ++ + K IS ++D A E + TEG S + LAGL V G +Y V
Sbjct: 529 STSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYGV 588
Query: 132 F 132
F
Sbjct: 589 F 589
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2
Length = 1612
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA + E + TEG S + ++GLGV G Y VF P K
Sbjct: 445 KGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVF------PLRGK 498
Query: 144 IFN 146
I N
Sbjct: 499 ILN 501
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3
Length = 1626
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA + E + TEG S + ++GLGV G Y VF P K
Sbjct: 457 KGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVF------PLRGK 510
Query: 144 IFN 146
I N
Sbjct: 511 ILN 513
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2
SV=1
Length = 1612
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 84 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 143
K I ++D DA + E + TEG S + ++GLGV G Y VF P K
Sbjct: 445 KGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVF------PLRGK 498
Query: 144 IFN 146
I N
Sbjct: 499 ILN 501
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,481,756
Number of Sequences: 539616
Number of extensions: 3674474
Number of successful extensions: 9195
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9148
Number of HSP's gapped (non-prelim): 57
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)