Query 025462
Match_columns 252
No_of_seqs 157 out of 233
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08294 TIM21: TIM21; InterP 100.0 2.4E-50 5.1E-55 338.5 11.1 142 103-246 1-144 (145)
2 KOG4836 Uncharacterized conser 100.0 2.1E-40 4.6E-45 290.6 9.3 146 100-249 68-213 (215)
3 PF08695 Coa1: Cytochrome oxid 99.6 4.8E-15 1E-19 118.5 12.4 105 122-245 9-116 (116)
4 COG3944 Capsular polysaccharid 63.9 6 0.00013 36.2 2.7 42 115-168 176-217 (226)
5 smart00500 SFM Splicing Factor 56.3 4.9 0.00011 27.9 0.6 27 154-182 2-31 (44)
6 PHA02669 hypothetical protein; 48.9 21 0.00045 31.7 3.4 37 115-162 8-44 (210)
7 PF08799 PRP4: pre-mRNA proces 42.6 7.2 0.00016 25.0 -0.3 18 159-176 5-22 (30)
8 PF02342 TerD: TerD domain; I 34.2 79 0.0017 26.6 4.7 40 191-233 132-171 (186)
9 PF00630 Filamin: Filamin/ABP2 30.9 2.2E+02 0.0048 21.0 6.5 40 189-229 31-77 (101)
10 PF01006 HCV_NS4a: Hepatitis C 29.6 18 0.00038 26.5 0.0 18 116-133 3-20 (56)
11 PF06522 B12D: NADH-ubiquinone 29.3 42 0.0009 25.2 2.0 26 113-139 7-32 (73)
12 PF13850 ERGIC_N: Endoplasmic 28.3 2.8E+02 0.0062 21.5 7.3 35 184-218 51-86 (96)
13 PF02982 Scytalone_dh: Scytalo 26.5 1.5E+02 0.0033 25.9 5.1 45 181-233 98-142 (160)
14 PRK07118 ferredoxin; Validated 24.9 34 0.00073 31.8 1.0 36 113-162 6-41 (280)
15 PF04355 SmpA_OmlA: SmpA / Oml 24.3 1.8E+02 0.0039 20.7 4.6 13 156-168 19-31 (71)
16 TIGR01944 rnfB electron transp 24.2 48 0.001 28.2 1.7 27 114-140 5-31 (165)
17 COG4177 LivM ABC-type branched 23.6 60 0.0013 30.8 2.3 27 138-167 178-204 (314)
18 PRK13254 cytochrome c-type bio 23.4 4.2E+02 0.009 22.6 7.2 21 115-135 10-30 (148)
19 cd06974 TerD_like Uncharacteri 22.7 3E+02 0.0065 22.6 6.2 46 187-235 106-152 (162)
20 cd06263 MAM Meprin, A5 protein 22.5 4E+02 0.0088 21.2 7.2 51 193-246 72-136 (157)
21 COG2310 TerZ Uncharacterized p 22.1 2.7E+02 0.0059 24.9 6.0 37 197-235 134-172 (182)
22 PF05961 Chordopox_A13L: Chord 21.3 59 0.0013 24.7 1.5 22 114-135 5-26 (68)
23 PF14927 Neurensin: Neurensin 21.0 80 0.0017 26.9 2.4 24 140-163 86-109 (140)
24 cd06574 TM_PBP1_branched-chain 20.9 92 0.002 28.1 2.9 23 145-167 145-167 (266)
25 PHA03049 IMV membrane protein; 20.1 65 0.0014 24.4 1.5 21 115-135 6-26 (68)
No 1
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=100.00 E-value=2.4e-50 Score=338.47 Aligned_cols=142 Identities=39% Similarity=0.653 Sum_probs=78.3
Q ss_pred CceeeeeeceeeehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCCCceeccccCc-cccccCc
Q 025462 103 KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR-NRAARQR 181 (252)
Q Consensus 103 Kv~rat~~s~~~~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGePIkayGe~s~-nrw~Rnr 181 (252)
|++|++++++|++|||+|+||+|+++|+|++|||++++|+.+||+|+++|++||+|+++||+||+|||++++ +||+|||
T Consensus 1 Kv~~~~~~~~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R 80 (145)
T PF08294_consen 1 KVKRATKQTSYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGEPIKAYGEETGRNRWRRNR 80 (145)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHH-HHHHHHT----EEEE-EEE-SS-EEE-
T ss_pred ChheehcceeeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCCCeEEecCCCCCCcccccC
Confidence 899999999999999999999999999999999998899999999999999999999999999999999998 8999998
Q ss_pred -ccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEeccC
Q 025462 182 -IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY 246 (252)
Q Consensus 182 -I~s~~y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd~ 246 (252)
+.++.+.|+||++||+|+|||+||+|+|+||+||+|++.+++|||+||+||++|++ +|+|||+
T Consensus 81 ~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~e~~yL~vdv~g~~--ri~l~dn 144 (145)
T PF08294_consen 81 PIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEYEYRYLYVDVPGHK--RIYLEDN 144 (145)
T ss_dssp ---EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-EEEEEEEE-TTS----EEEE--
T ss_pred CccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCeeEEEEEEecCCCe--EEEEEcC
Confidence 66666679999999999999999999999999999997679999999999999976 8999984
No 2
>KOG4836 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=290.58 Aligned_cols=146 Identities=30% Similarity=0.580 Sum_probs=138.3
Q ss_pred CCCCceeeeeeceeeehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCCCceeccccCcccccc
Q 025462 100 IPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR 179 (252)
Q Consensus 100 i~eKv~rat~~s~~~~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGePIkayGe~s~nrw~R 179 (252)
.+.||++++.+++|+.+||+|+||+|+++|+|++|||++++|+.+||+||++|++||+|+.++|++||||||+++ |+||
T Consensus 68 ~~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~~~ifG~~iKgfGE~t~-rgRR 146 (215)
T KOG4836|consen 68 FGGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEVQGIFGESIKGFGEETR-RGRR 146 (215)
T ss_pred CccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHHhhHhhhhhhhhhhhhc-Cccc
Confidence 456999999999999999999999999999999999998899999999999999999999999999999999998 6789
Q ss_pred CcccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEeccCCCC
Q 025462 180 QRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 249 (252)
Q Consensus 180 nrI~s~~y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd~~p~ 249 (252)
+||+|..| |+||.+|++|+|||+|.+.+|+|+++++.+ +|+|+|+||+|||+++++..|++||+-|.
T Consensus 147 ~hVa~~~y-dk~G~~h~~m~Fhv~g~~~~g~v~~~~k~~--~g~~~~~flfVdv~~ypr~tii~~dnr~~ 213 (215)
T KOG4836|consen 147 QHVAHHKY-DKDGMEHLRMQFHVEGSEPQGHVFARLKEV--DGDYEWDFLFVDVARYPRTTIILEDNRVR 213 (215)
T ss_pred ceeeeeee-ecCCceEEEEEEEEEcCCcccchhhhhhcc--CCCCceeEEEEecCCCceeEEEccCCccc
Confidence 99999999 899999999999999999999999999876 78888888999999999999999998664
No 3
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=99.63 E-value=4.8e-15 Score=118.52 Aligned_cols=105 Identities=25% Similarity=0.389 Sum_probs=79.4
Q ss_pred HHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCC--Cceeccc-cCccccccCcccceEEecCCCceEEEE
Q 025462 122 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITGYGQ-ESRNRAARQRIPNRVYTDEFGIEHVEV 198 (252)
Q Consensus 122 gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGe--PIkayGe-~s~nrw~RnrI~s~~y~D~dG~eh~~m 198 (252)
++++.++|.+..++ ..+.+|+.|++.+++||+|+++||+ ||+.... .+++ .... ..++.+
T Consensus 9 ~~~~~~~~~~~~~~----~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~~~i~G~----------~~~~---~g~a~~ 71 (116)
T PF08695_consen 9 GWGVFLFYAINSEK----KSSEYYKEALEQLRSNPEVVEALGENIPIKDGWPWISGS----------INTS---KGRADL 71 (116)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCcccccce----------eecc---CcEEEE
Confidence 33345667766665 4567899999999999999999999 8886442 2321 2212 446889
Q ss_pred EEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecc
Q 025462 199 NFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLES 245 (252)
Q Consensus 199 ~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd 245 (252)
+|+|+||+++|+||+++.++.+.+.|+|..|.|.++ ..++|.|.|
T Consensus 72 ~~pV~G~k~~G~v~~~a~r~~~~~~W~~~~~~v~~~--~g~~I~L~~ 116 (116)
T PF08695_consen 72 SFPVKGPKGKGTVYVEATRSGGKDPWEILRLEVEID--DGQVIDLLD 116 (116)
T ss_pred EEEEEcCCCcEEEEEEEEecCCCCceEEEEEEEEeC--CCCEEeCcC
Confidence 999999999999999999985555599999999999 345776643
No 4
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=63.90 E-value=6 Score=36.21 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=35.8
Q ss_pred ehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhhCCCcee
Q 025462 115 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITG 168 (252)
Q Consensus 115 ~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~LGePIka 168 (252)
++|-|++||+|++.++++.|++ + ++||.-.++.+.||-|+=|
T Consensus 176 i~iaf~~Gl~~~igiafl~e~l----D--------~tIKs~edie~~l~lPvLG 217 (226)
T COG3944 176 IVIAFLAGLAGAIGIAFLLEYL----D--------KTIKSEEDIEEVLDLPVLG 217 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----h--------hhcCCHHHHHHhhCCceee
Confidence 4788999999999999999984 2 4788999999999999653
No 5
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=56.29 E-value=4.9 Score=27.89 Aligned_cols=27 Identities=41% Similarity=0.770 Sum_probs=18.9
Q ss_pred hchhHHHh---hCCCceeccccCccccccCcc
Q 025462 154 DDGQVRVR---IGSPITGYGQESRNRAARQRI 182 (252)
Q Consensus 154 ~DprV~~~---LGePIkayGe~s~nrw~RnrI 182 (252)
.|.+|+.. ||+||+=|||.... ||+|+
T Consensus 2 ~d~eV~~~LR~lgePi~lFGE~~~~--Rr~RL 31 (44)
T smart00500 2 PDSEVIRRLRELGEPITLFGEDDQE--RRQRL 31 (44)
T ss_pred CHHHHHHHHHHcCCCeeecCCChHH--HHHHH
Confidence 35666554 59999999997754 45554
No 6
>PHA02669 hypothetical protein; Provisional
Probab=48.92 E-value=21 Score=31.74 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=25.7
Q ss_pred ehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhh
Q 025462 115 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRI 162 (252)
Q Consensus 115 ~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~L 162 (252)
+||++.+-|||+++|+|+ || ..|.+|+.+-.||++-+
T Consensus 8 ~iIvavi~LTgAaiYlLi-Ei----------GLAaERanKrsRvK~nM 44 (210)
T PHA02669 8 GIIVAVIYLTGAAIYLLI-EI----------GLAAERANKRSRVKANM 44 (210)
T ss_pred HHHHHHHHHHHHHHHHHH-HH----------HHHHHHhhhHHHHHHHH
Confidence 467777888999999876 43 45666666666666543
No 7
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=42.58 E-value=7.2 Score=25.03 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=10.4
Q ss_pred HHhhCCCceeccccCccc
Q 025462 159 RVRIGSPITGYGQESRNR 176 (252)
Q Consensus 159 ~~~LGePIkayGe~s~nr 176 (252)
...||+||+=|||...+|
T Consensus 5 LR~lgePi~lFGE~~~~R 22 (30)
T PF08799_consen 5 LRELGEPITLFGETDADR 22 (30)
T ss_dssp HHHCT--SCETT--HHHH
T ss_pred HHhcCCChhhhCCChHHH
Confidence 356799999999977653
No 8
>PF02342 TerD: TerD domain; InterPro: IPR003325 This domain is found in tellurite resistance proteins, cAMP binding protein, and chemical-damaging agent resistance proteins and general stress proteins. Tellurium compounds are used in several industrial processes, although they are relatively rare in the environment. Genes associated with tellurite resistance (TeR) are found in many pathogenic bacteria []. The cellular Slime mould, Dictyostelium discoideum, contains a cAMP-binding protein, CABP1, which is composed of two subunits. The C-terminal half of these subunits contain this domain [].; GO: 0006950 response to stress; PDB: 2QNG_A 2QZ7_A 2KXV_A 2KXT_A 3IBZ_A.
Probab=34.22 E-value=79 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=31.2
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEE
Q 025462 191 FGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEI 233 (252)
Q Consensus 191 dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV 233 (252)
.|.+-++..+. ..+..++++..++.+. .+.|+|+-+---.
T Consensus 132 ~~~~~~~~~l~-~~~~~~a~v~~~lyr~--~~~W~~~avg~g~ 171 (186)
T PF02342_consen 132 PGTELARYDLD-DFSGETALVLAELYRR--GGGWKFRAVGQGF 171 (186)
T ss_dssp TTEEEEEEECH-HCTT-SEEEEEEEEEE--TTCEEEEEEEEEE
T ss_pred CcceeEEEecc-CCCCceEEEEEEEEEc--CCeEEEEEEEEec
Confidence 77777776555 6789999999999997 7999998775443
No 9
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=30.91 E-value=2.2e+02 Score=21.03 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=28.4
Q ss_pred cCCCceEE----EEEEEEEcCCCce---EEEEEEEEcCCCCceEEEEE
Q 025462 189 DEFGIEHV----EVNFYIRGPHGAG---KVFTEMFKDKEDKQWKFTYL 229 (252)
Q Consensus 189 D~dG~eh~----~m~F~VeGprg~G---~V~lE~~K~~~~g~weY~yL 229 (252)
|..|.... .+++.|.+|.+.. .+.+++..+ .+|.|...|.
T Consensus 31 d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~v~~~-~~G~y~v~y~ 77 (101)
T PF00630_consen 31 DAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVEVIDN-GDGTYTVSYT 77 (101)
T ss_dssp TTTSSBEESTSSEEEEEEESSSSESS--EEEEEEEEE-SSSEEEEEEE
T ss_pred cCCCCccccCCceeEEEEeCCCCCccccccceEEEEC-CCCEEEEEEE
Confidence 55555433 5778889998874 677777665 5798887776
No 10
>PF01006 HCV_NS4a: Hepatitis C virus non-structural protein NS4a; InterPro: IPR000745 NS4a (non-structural protein) forms an integral part of the NS3 serine protease in Hepatitis C virus, as it is required in a number of cases as a cofactor of cleavage [, ]. It has also been reported that NS4a interacts with NS4b and NS3 to form a multi-subunit replicase complex [].; GO: 0016032 viral reproduction, 0044423 virion part; PDB: 3M5M_C 2FM2_D 3KNX_D 2A4R_B 2F9V_B 2OBQ_B 2O8M_C 3KEE_F 3KF2_C 1NS3_D ....
Probab=29.63 E-value=18 Score=26.50 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhhhh
Q 025462 116 IILAGLGVAGAAAYAVFK 133 (252)
Q Consensus 116 VIl~G~gltg~v~Y~l~s 133 (252)
++++|++++++++|.+++
T Consensus 3 ~vlvGg~lAa~aay~~~t 20 (56)
T PF01006_consen 3 WVLVGGALAALAAYCLTT 20 (56)
T ss_dssp ------------------
T ss_pred EEEEhHHHHHHHHHHhcc
Confidence 578899999999998765
No 11
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=29.32 E-value=42 Score=25.15 Aligned_cols=26 Identities=31% Similarity=0.825 Sum_probs=16.3
Q ss_pred eeehhhhHHHHHHHHHhhhhhhhccCC
Q 025462 113 YSLIILAGLGVAGAAAYAVFKELIFEP 139 (252)
Q Consensus 113 ~~~VIl~G~gltg~v~Y~l~sELf~s~ 139 (252)
|=+++++|+|++++ +|.++.-|+..|
T Consensus 7 ~PL~~~vg~a~~~a-~~~~~r~l~~~P 32 (73)
T PF06522_consen 7 YPLFVIVGVAVGGA-TFYLYRLLLTNP 32 (73)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 44677888888544 555666654444
No 12
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=28.25 E-value=2.8e+02 Score=21.46 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=25.7
Q ss_pred ceEEecCCCceEEEEEEEEEcC-CCceEEEEEEEEc
Q 025462 184 NRVYTDEFGIEHVEVNFYIRGP-HGAGKVFTEMFKD 218 (252)
Q Consensus 184 s~~y~D~dG~eh~~m~F~VeGp-rg~G~V~lE~~K~ 218 (252)
+...+|.+..+.++++|.|.=| --=..+++++...
T Consensus 51 ~~~~VD~~~~~~l~in~ditf~~~pC~~l~vDv~D~ 86 (96)
T PF13850_consen 51 YQLVVDTSRDEKLQINFDITFPHMPCDFLSVDVQDA 86 (96)
T ss_pred EEEEEcCCCCceEEEEEEEEECCCccCeeeeEeEcc
Confidence 3456688888899999999866 5566677777653
No 13
>PF02982 Scytalone_dh: Scytalone dehydratase; InterPro: IPR004235 Scytalone dehydratase is a member of the group of enzymes involved in fungal melanin biosynthesis. It was first identified in a phytopathogenic fungus, Magnaporthe grisea (Rice blast fungus), which causes rice blast disease. Scytalone dehydratase is a molecular target of inhibitor design efforts aimed at protecting rice plants from fungal disease [, ].; GO: 0030411 scytalone dehydratase activity, 0006582 melanin metabolic process; PDB: 4STD_A 3STD_A 6STD_A 7STD_C 1STD_A 5STD_C 1IDP_B 2STD_A.
Probab=26.46 E-value=1.5e+02 Score=25.94 Aligned_cols=45 Identities=38% Similarity=0.510 Sum_probs=30.4
Q ss_pred cccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEE
Q 025462 181 RIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEI 233 (252)
Q Consensus 181 rI~s~~y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV 233 (252)
|++|.+|+|.+..+ +.. +| .|.|+....-+|- +|+|.|.=|.-+|
T Consensus 98 RaaHqry~D~~~~~-V~~----kG-h~h~~~~h~Y~Kv--dG~WK~agl~P~v 142 (160)
T PF02982_consen 98 RAAHQRYTDDSLTE-VKA----KG-HGHGTNTHWYRKV--DGVWKFAGLKPEV 142 (160)
T ss_dssp EEEEEEESSTT--S-EEE----EE-EEEEEEEEEEEEE--TTEEEEEEEEEEE
T ss_pred EeeeeeeeCCCccE-EEe----ee-ccceeEEEEEEEe--CCEEEEeeeccce
Confidence 58999998766554 333 22 3566666666675 8999998887776
No 14
>PRK07118 ferredoxin; Validated
Probab=24.95 E-value=34 Score=31.83 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=26.4
Q ss_pred eeehhhhHHHHHHHHHhhhhhhhccCCcchHHHHHHHHHHhhchhHHHhh
Q 025462 113 YSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRI 162 (252)
Q Consensus 113 ~~~VIl~G~gltg~v~Y~l~sELf~s~s~t~iyn~Al~rIk~DprV~~~L 162 (252)
+.++++.++|+..+++-.+.+..| .|+.||++.++.
T Consensus 6 ~~~~~~~~~g~~~g~~l~~a~~~f--------------~v~~d~~~~~i~ 41 (280)
T PRK07118 6 FAVLSLGALGLVFGILLAFASKKF--------------AVEEDPRVEAVR 41 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeee--------------eccCCCcHHHHH
Confidence 456788888888888888888886 256666666554
No 15
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=24.28 E-value=1.8e+02 Score=20.75 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=9.9
Q ss_pred hhHHHhhCCCcee
Q 025462 156 GQVRVRIGSPITG 168 (252)
Q Consensus 156 prV~~~LGePIka 168 (252)
.+|..+||.|..-
T Consensus 19 ~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 19 DQVRALLGSPSLR 31 (71)
T ss_dssp HHHHHHHTS-SEE
T ss_pred HHHHHhcCCCCcc
Confidence 6899999999653
No 16
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=24.23 E-value=48 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.109 Sum_probs=20.1
Q ss_pred eehhhhHHHHHHHHHhhhhhhhccCCc
Q 025462 114 SLIILAGLGVAGAAAYAVFKELIFEPK 140 (252)
Q Consensus 114 ~~VIl~G~gltg~v~Y~l~sELf~s~s 140 (252)
.++++.++|+..+++-++.+.+|.=..
T Consensus 5 ~~~~~~~~g~~~~~~l~~~~~~~~ve~ 31 (165)
T TIGR01944 5 AVAALSALGLALGAILGYAARRFPVEA 31 (165)
T ss_pred HHHHHHHHHHHHHHHHHHheeeeeccC
Confidence 356778888888888888888875544
No 17
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=23.56 E-value=60 Score=30.85 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.1
Q ss_pred CCcchHHHHHHHHHHhhchhHHHhhCCCce
Q 025462 138 EPKEYKIFNKALKRIQDDGQVRVRIGSPIT 167 (252)
Q Consensus 138 s~s~t~iyn~Al~rIk~DprV~~~LGePIk 167 (252)
..|| |.++++-||+|+...+.+|-+..
T Consensus 178 ~~S~---~Gr~l~AiRedE~~a~alG~n~~ 204 (314)
T COG4177 178 VRSP---FGRALRAIREDEIAARALGINVT 204 (314)
T ss_pred hcCC---cchhHhhhccCHHHHHHcCCCHH
Confidence 3456 99999999999999999998643
No 18
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.36 E-value=4.2e+02 Score=22.60 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=13.8
Q ss_pred ehhhhHHHHHHHHHhhhhhhh
Q 025462 115 LIILAGLGVAGAAAYAVFKEL 135 (252)
Q Consensus 115 ~VIl~G~gltg~v~Y~l~sEL 135 (252)
.++++++.+.++++|+++..|
T Consensus 10 ~~~~~~~~~~~~~~~L~~~a~ 30 (148)
T PRK13254 10 LIILGALAALGLAVALVLYAL 30 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777777765
No 19
>cd06974 TerD_like Uncharacterized proteins involved in stress response, similar to tellurium resistance terD. Tellurium resistance terD like proteins. This family is composed of uncharacterized proteins involved in stress response, such as the tellurium resistance proteins, chemical-damaging agent resistance proteins, and general stress proteins from a variety of organisms. The tellurium resistance proteins are homologous terA,-D,-E,-F,-Z,-X gene products, which confer tellurium resistance mediated by plasmids. Currently, the biochemical mechanism of tellurium resistance remains unknown. The family also contains several ter gene homologues, YceC, YceD, YceE, for which there is no clear evidence for any involvement in the tellurium resistance. A putative cAMP-binding protin CABP1 shows a significant similarity to the terD protein and is also included in this family.
Probab=22.71 E-value=3e+02 Score=22.61 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=32.3
Q ss_pred EecCCCceEEEEEEEEEcC-CCceEEEEEEEEcCCCCceEEEEEEEEECC
Q 025462 187 YTDEFGIEHVEVNFYIRGP-HGAGKVFTEMFKDKEDKQWKFTYLIVEITS 235 (252)
Q Consensus 187 y~D~dG~eh~~m~F~VeGp-rg~G~V~lE~~K~~~~g~weY~yL~VdV~g 235 (252)
..+.++ +...++|.+... ..++.+.+|..+. .+.|+|+-+-.-.++
T Consensus 106 l~~~~~-~~~~~~~~l~~~~~~~a~i~~elyr~--~~~Wk~~avg~g~~~ 152 (162)
T cd06974 106 LVDAGG-NTELARYDLTEDSGETALILAELYRR--NGEWKFRAVGQGFNG 152 (162)
T ss_pred EEECCC-CeEEEEEECCCCCCcEEEEEEEEEEE--CCeEEEEEeccccCC
Confidence 334443 345566777665 8899999999997 699999877654443
No 20
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=22.54 E-value=4e+02 Score=21.25 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=27.3
Q ss_pred ceEEEEEEEEEcCCCceEEEEEEEEcCC-------------CCceEEEEEEEEECCC-CceEEEeccC
Q 025462 193 IEHVEVNFYIRGPHGAGKVFTEMFKDKE-------------DKQWKFTYLIVEITSP-YKAQLMLESY 246 (252)
Q Consensus 193 ~eh~~m~F~VeGprg~G~V~lE~~K~~~-------------~g~weY~yL~VdV~g~-~~~~IiLEd~ 246 (252)
.--+++.+|..|+. .|.+.|.+..+.. ...|. ...|++... ++-+|++|..
T Consensus 72 ~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~--~~~v~l~~~~~~fqi~fe~~ 136 (157)
T cd06263 72 SHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQ--EAEVTLSASSKPFQVVFEGV 136 (157)
T ss_pred CeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeE--EEEEEECCCCCceEEEEEEE
Confidence 33355556666654 4566666544322 14455 455555554 5667776653
No 21
>COG2310 TerZ Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]
Probab=22.13 E-value=2.7e+02 Score=24.86 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=28.4
Q ss_pred EEEEEEEc--CCCceEEEEEEEEcCCCCceEEEEEEEEECC
Q 025462 197 EVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITS 235 (252)
Q Consensus 197 ~m~F~VeG--prg~G~V~lE~~K~~~~g~weY~yL~VdV~g 235 (252)
..+|.+.+ ...++++.+|..+. .++|+|+-+.-=..|
T Consensus 134 l~ry~Ls~d~~~etavi~~eLyR~--~~~Wkf~AvGqg~~G 172 (182)
T COG2310 134 LARYDLSEDFSQETAVILGELYRH--NGEWKFTAVGQGFNG 172 (182)
T ss_pred EEEEEccccccceeeEEEEEEEEc--CCeEEEEEEeeccCC
Confidence 34567876 57799999999996 799999987654433
No 22
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=21.28 E-value=59 Score=24.68 Aligned_cols=22 Identities=14% Similarity=0.462 Sum_probs=16.4
Q ss_pred eehhhhHHHHHHHHHhhhhhhh
Q 025462 114 SLIILAGLGVAGAAAYAVFKEL 135 (252)
Q Consensus 114 ~~VIl~G~gltg~v~Y~l~sEL 135 (252)
++++++-+++.|+++|+++.--
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666778899999998764
No 23
>PF14927 Neurensin: Neurensin
Probab=21.05 E-value=80 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHhhchhHHHhhC
Q 025462 140 KEYKIFNKALKRIQDDGQVRVRIG 163 (252)
Q Consensus 140 s~t~iyn~Al~rIk~DprV~~~LG 163 (252)
+....||.+|++|+----+.=-||
T Consensus 86 ~~a~~~n~~Ld~c~laG~~L~~lG 109 (140)
T PF14927_consen 86 SQAARFNNALDTCKLAGLILLCLG 109 (140)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHH
Confidence 346789999999987666665555
No 24
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=20.86 E-value=92 Score=28.06 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHHHhhchhHHHhhCCCce
Q 025462 145 FNKALKRIQDDGQVRVRIGSPIT 167 (252)
Q Consensus 145 yn~Al~rIk~DprV~~~LGePIk 167 (252)
|.+++..+.+||++.+.+|-+.+
T Consensus 145 ~G~~lrAv~~n~~~A~~~Gi~v~ 167 (266)
T cd06574 145 LGLAMRATGDNPDMARSLGINVD 167 (266)
T ss_pred hchhhhhccCCHHHHHHcCCCHH
Confidence 89999999999999999998643
No 25
>PHA03049 IMV membrane protein; Provisional
Probab=20.07 E-value=65 Score=24.43 Aligned_cols=21 Identities=10% Similarity=0.487 Sum_probs=15.9
Q ss_pred ehhhhHHHHHHHHHhhhhhhh
Q 025462 115 LIILAGLGVAGAAAYAVFKEL 135 (252)
Q Consensus 115 ~VIl~G~gltg~v~Y~l~sEL 135 (252)
+++++-+++.|+++|.+++--
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 355666778899999998754
Done!