Query 025462
Match_columns 252
No_of_seqs 157 out of 233
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ciu_A TIM21P, import inner me 100.0 7.1E-40 2.4E-44 268.9 12.4 109 136-246 2-120 (127)
2 1mzw_B U4/U6 snRNP 60KDA prote 47.5 4.2 0.00014 25.3 0.1 17 160-176 7-23 (31)
3 3e8v_A Possible transglutamina 42.8 88 0.003 23.3 6.8 49 183-244 33-81 (82)
4 2dk4_A PRE-mRNA-splicing facto 40.6 5.9 0.0002 29.5 0.0 25 153-177 27-54 (76)
5 1r4g_A RNA polymerase alpha su 28.8 25 0.00086 24.2 1.6 22 141-162 20-41 (53)
6 3qby_A Hepatoma-derived growth 26.5 21 0.00071 26.7 1.0 29 130-158 63-91 (94)
7 3ibz_A Putative tellurium resi 25.5 59 0.002 27.5 3.8 42 185-230 129-173 (191)
8 2oxg_Z SOXZ protein; immunoglo 22.5 2.5E+02 0.0086 21.4 6.6 28 198-227 75-102 (108)
9 2d7n_A Filamin-C; beta-sandwic 21.6 1.1E+02 0.0038 22.6 4.3 30 198-229 24-53 (93)
10 3fyf_A Protein BVU-3222; struc 21.3 1.6E+02 0.0055 24.9 5.6 50 187-245 112-162 (176)
11 2qng_A Uncharacterized protein 20.4 82 0.0028 26.8 3.7 41 185-229 137-178 (199)
No 1
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-40 Score=268.91 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=101.5
Q ss_pred ccCCcchHHHHHHHHHHhhchhHHHhh----C----CCceecccc-CccccccCc-ccceEEecCCCceEEEEEEEEEcC
Q 025462 136 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGP 205 (252)
Q Consensus 136 f~s~s~t~iyn~Al~rIk~DprV~~~L----G----ePIkayGe~-s~nrw~Rnr-I~s~~y~D~dG~eh~~m~F~VeGp 205 (252)
|++++++++||+||++|++||+|+++| | +||+|||++ +++||+||| |+|++++|+||+|||+|+|||+||
T Consensus 2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~ 81 (127)
T 2ciu_A 2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK 81 (127)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence 356679999999999999999999999 6 899999998 889999999 999999999999999999999999
Q ss_pred CCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEeccC
Q 025462 206 HGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY 246 (252)
Q Consensus 206 rg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLEd~ 246 (252)
+++|+||+||+|+++.++|+|+||+|||+|++ +||||+.
T Consensus 82 ~~~G~V~le~~k~~~~~~~ef~Yl~vDV~g~~--Ri~Le~p 120 (127)
T 2ciu_A 82 KKIALVHLEAKESKQNYQPDFINMYVDVPGEK--RYYLIKP 120 (127)
T ss_dssp SCEEEEEEEEECCSSCSSCEEEEEEEECTTSC--CEEEECC
T ss_pred CCcEEEEEEEEecCCCCceEEEEEEEEeCCCc--eEEEECC
Confidence 99999999999988899999999999999976 8999984
No 2
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=47.47 E-value=4.2 Score=25.34 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=13.5
Q ss_pred HhhCCCceeccccCccc
Q 025462 160 VRIGSPITGYGQESRNR 176 (252)
Q Consensus 160 ~~LGePIkayGe~s~nr 176 (252)
..||+||+=|||....|
T Consensus 7 R~lgePi~lFGE~~~~R 23 (31)
T 1mzw_B 7 RALGEPITLFGEGPAER 23 (31)
T ss_dssp HHTTCCSEETTCCHHHH
T ss_pred HHcCCCeeecCCChHHH
Confidence 45799999999977543
No 3
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=42.77 E-value=88 Score=23.31 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=33.8
Q ss_pred cceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEec
Q 025462 183 PNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 244 (252)
Q Consensus 183 ~s~~y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~IiLE 244 (252)
..+.++|.+|.-.+.+ |.|.+++-+.| +|.|-|..| +....++-.|+|+
T Consensus 33 ~~~~~TD~~G~~s~~~--------G~Gd~~v~A~k---~G~~g~a~l--~~~~~~~~~i~L~ 81 (82)
T 3e8v_A 33 VATKHTDRSGHASLTA--------GKGDMLVWASK---DGRFGYSKL--SFGKDNELKITLD 81 (82)
T ss_dssp EEEEECCTTSEEEEEC--------CSEEEEEEEEE---TTEEEEEEE--EETTBCEEEEECC
T ss_pred EEEEEECCCceEEEEE--------cCCceEEEecc---CCEEEEEEe--ccCCCceEEEEeC
Confidence 3456778888865554 89999999988 488886655 4444444566653
No 4
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=40.56 E-value=5.9 Score=29.50 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=17.8
Q ss_pred hhchhHHHhh---CCCceeccccCcccc
Q 025462 153 QDDGQVRVRI---GSPITGYGQESRNRA 177 (252)
Q Consensus 153 k~DprV~~~L---GePIkayGe~s~nrw 177 (252)
-.|.+|+..| |+||+=|||....|.
T Consensus 27 ~~d~eV~~~LR~lgEPi~LFGE~~~~Rr 54 (76)
T 2dk4_A 27 LSRQEVIRRLRERGEPIRLFGETDYDAF 54 (76)
T ss_dssp SCHHHHHHHHHHHTCCSSCTTCCHHHHH
T ss_pred CCHHHHHHHHHHcCCCeeecCCChHHHH
Confidence 3455666555 999999999876543
No 5
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=28.83 E-value=25 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHhhchhHHHhh
Q 025462 141 EYKIFNKALKRIQDDGQVRVRI 162 (252)
Q Consensus 141 ~t~iyn~Al~rIk~DprV~~~L 162 (252)
..+.|=+.+.+|+.|++|.+++
T Consensus 20 ~K~sYi~~L~~CktdqEV~~~M 41 (53)
T 1r4g_A 20 EKAAYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp HHHHHHHHHHTCCSSHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHH
Confidence 5788999999999999998875
No 6
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=26.45 E-value=21 Score=26.72 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=22.9
Q ss_pred hhhhhhccCCcchHHHHHHHHHHhhchhH
Q 025462 130 AVFKELIFEPKEYKIFNKALKRIQDDGQV 158 (252)
Q Consensus 130 ~l~sELf~s~s~t~iyn~Al~rIk~DprV 158 (252)
.-..|-|..++....|++||+-|++||.|
T Consensus 63 ~~~~~~~~k~~k~k~F~~Al~Eien~p~~ 91 (94)
T 3qby_A 63 DKCKDKYGKPNKRKGFNEGLWEIQNNPHA 91 (94)
T ss_dssp HHHHHHHCSCCSSTTHHHHHHHHHHCTTS
T ss_pred HHHHHHHccCccHHHHHHHHHHHhhCCCC
Confidence 33456666667789999999999999976
No 7
>3ibz_A Putative tellurium resistant like protein TERD; structural genomics, stress protein, tellurium resistance; 1.78A {Streptomyces coelicolor A3}
Probab=25.49 E-value=59 Score=27.47 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=30.5
Q ss_pred eEEecC-CCceEEEEEEEEEc--CCCceEEEEEEEEcCCCCceEEEEEE
Q 025462 185 RVYTDE-FGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLI 230 (252)
Q Consensus 185 ~~y~D~-dG~eh~~m~F~VeG--prg~G~V~lE~~K~~~~g~weY~yL~ 230 (252)
+...|. +|.|- .+|.+.+ ..-+++|..|..+. .|+|+|+-+-
T Consensus 129 irv~d~~~g~el--ar~~l~~~~~~etA~v~~elYR~--~g~WkfrAvG 173 (191)
T 3ibz_A 129 IRVVNQAGEAEI--ARYDLSEDASTETAMVFGELYRH--GAEWKFRAIG 173 (191)
T ss_dssp EEEEETTTTEEE--EEEEHHHHSTTCSEEEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEECCCCcEE--EEEECCCCCCCcEEEEEEEEEEe--CCcEEEEEee
Confidence 344453 66665 4566763 56799999999997 7999998763
No 8
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=22.49 E-value=2.5e+02 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=21.6
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEE
Q 025462 198 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 227 (252)
Q Consensus 198 m~F~VeGprg~G~V~lE~~K~~~~g~weY~ 227 (252)
++|.+.|+ +.|.+.+.+..+ .++.|+.+
T Consensus 75 ~~F~~~~~-~~g~l~v~~~Dn-~G~~~~~~ 102 (108)
T 2oxg_Z 75 FEFDAKVD-AAGEFKFTWYDD-DGSVYEDV 102 (108)
T ss_dssp EEEEEEEC-SSEEEEEEEEET-TSCEEEEE
T ss_pred EEEEEecC-CCcEEEEEEEEC-CCCEEEEE
Confidence 56777775 467999999887 57888865
No 9
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=21.57 E-value=1.1e+02 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.0
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 025462 198 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 229 (252)
Q Consensus 198 m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL 229 (252)
|...|.+|.|+ .+..++..+ .+|.|+..|.
T Consensus 24 l~v~V~~PsG~-~~~~~v~d~-~dGtY~v~yt 53 (93)
T 2d7n_A 24 LTGEVRMPSGK-TARPNITDN-KDGTITVRYA 53 (93)
T ss_dssp EEEEEECTTSC-EECCEEEEC-SSSCEEEEEC
T ss_pred EEEEEECCCCC-ccceEEEEC-CCCEEEEEEE
Confidence 45678999987 577777665 6788886653
No 10
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=21.26 E-value=1.6e+02 Score=24.93 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=35.7
Q ss_pred EecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCC-CceEEEecc
Q 025462 187 YTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSP-YKAQLMLES 245 (252)
Q Consensus 187 y~D~dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL~VdV~g~-~~~~IiLEd 245 (252)
.+|+.|+ +.+.|.|.|..-+..|.+.+.+. +| +--|+|.-. .+.+|-+..
T Consensus 112 ~~dKKGn--~~~~f~v~g~~dsa~v~i~l~~g--~n-----~asv~V~pnfN~n~itf~G 162 (176)
T 3fyf_A 112 RQDKDGN--VYYNYGINGIAVSATVSIVLTGG--TN-----QASVTINPNFSGNTLTMNG 162 (176)
T ss_dssp EECTTCC--EEEEEEEECSSCEEEEEEEECTT--SS-----EEEEEEEETTCCCCEEEEE
T ss_pred EEccCCc--EEEEEEEcccceEEEEEEEEeCC--CC-----eEEEEEccccCCCceEEEE
Confidence 4578888 77889999999999999999773 34 445666543 556665544
No 11
>2qng_A Uncharacterized protein SAV2460; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Streptomyces avermitilis}
Probab=20.43 E-value=82 Score=26.79 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=28.3
Q ss_pred eEEecCCCceEEEEEEEEEc-CCCceEEEEEEEEcCCCCceEEEEE
Q 025462 185 RVYTDEFGIEHVEVNFYIRG-PHGAGKVFTEMFKDKEDKQWKFTYL 229 (252)
Q Consensus 185 ~~y~D~dG~eh~~m~F~VeG-prg~G~V~lE~~K~~~~g~weY~yL 229 (252)
+...| +|.|-++ |.++. ..-+++|..|..+. .+|+|+|+-+
T Consensus 137 iri~d-~g~elar--y~l~~~~~etA~v~gElYR~-~~g~WKfrAv 178 (199)
T 2qng_A 137 LRMRE-GYTVLAE--DDFGGVLGSTAATVGEFVRD-DSGEWTFHPG 178 (199)
T ss_dssp EEEEE-TTEEEEE--ECSTTCTTCSEEEEEEEEEC-TTSCEEEECC
T ss_pred EEEEe-CCeEEEE--EecCCCCCceEEEEEEEEEc-CCCCEEEEEE
Confidence 44445 5665554 55554 56699999999996 2489999854
Done!