Query 025462
Match_columns 252
No_of_seqs 157 out of 233
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 10:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025462.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025462hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w6ga3 d.17.2.1 (A:97-211) Co 59.3 21 0.0015 26.1 7.9 20 143-162 7-26 (115)
2 d2dk4a1 a.140.6.1 (A:8-70) Pre 39.2 3 0.00022 28.4 0.0 28 154-183 21-51 (63)
3 d1d6za3 d.17.2.1 (A:186-300) C 31.7 85 0.0062 22.5 7.5 20 144-163 6-25 (115)
4 d1r4ga_ a.8.5.1 (A:) RNA polym 25.1 15 0.0011 23.7 1.6 23 140-162 19-41 (53)
5 d2nlua1 b.34.9.2 (A:1-100) Hep 21.0 17 0.0012 25.6 1.4 26 134-159 71-96 (100)
6 d1eysh1 b.41.1.1 (H:59-259) Ph 19.6 1.3E+02 0.0096 23.7 6.9 39 201-242 97-137 (201)
7 d2h3ka1 b.1.28.1 (A:1-144) Iro 18.5 72 0.0053 23.9 4.6 63 168-231 62-134 (144)
8 d1iz6a1 b.34.5.2 (A:2-70) Euka 17.1 1.3E+02 0.0094 19.4 5.6 38 190-227 19-58 (69)
9 d2dj4a1 b.1.18.10 (A:8-108) Fi 17.1 82 0.006 21.2 4.5 35 191-229 33-67 (101)
10 d2iaza1 a.281.1.2 (A:1-111) Hy 16.0 42 0.003 23.5 2.6 28 137-164 16-43 (111)
No 1
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=59.31 E-value=21 Score=26.13 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhchhHHHhh
Q 025462 143 KIFNKALKRIQDDGQVRVRI 162 (252)
Q Consensus 143 ~iyn~Al~rIk~DprV~~~L 162 (252)
.-|..|-+.+++||+++++|
T Consensus 7 eE~~~~e~~~~~dp~~~~al 26 (115)
T d1w6ga3 7 EEFEVVEQLLATDERWLKAL 26 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHH
Confidence 45889999999999999998
No 2
>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.20 E-value=3 Score=28.38 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=19.7
Q ss_pred hchhHHHhh---CCCceeccccCccccccCccc
Q 025462 154 DDGQVRVRI---GSPITGYGQESRNRAARQRIP 183 (252)
Q Consensus 154 ~DprV~~~L---GePIkayGe~s~nrw~RnrI~ 183 (252)
.|.+|+..| |+||.=|||....| |+|+.
T Consensus 21 ~~~eV~~~LR~lgePI~lFGE~~~~r--r~RLr 51 (63)
T d2dk4a1 21 SRQEVIRRLRERGEPIRLFGETDYDA--FQRLR 51 (63)
T ss_dssp CHHHHHHHHHHHTCCSSCTTCCHHHH--HHHHH
T ss_pred CHHHHHHHHHHcCCCeehhcCChHHH--HHHHH
Confidence 355676665 99999999987653 55543
No 3
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=31.68 E-value=85 Score=22.54 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhchhHHHhhC
Q 025462 144 IFNKALKRIQDDGQVRVRIG 163 (252)
Q Consensus 144 iyn~Al~rIk~DprV~~~LG 163 (252)
-|..|-+.+++||+++++|-
T Consensus 6 e~~~~e~~~~~dp~~~aal~ 25 (115)
T d1d6za3 6 DFASVQNIINNSEEFAAAVK 25 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHH
Confidence 37889999999999999993
No 4
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=25.11 E-value=15 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHhhchhHHHhh
Q 025462 140 KEYKIFNKALKRIQDDGQVRVRI 162 (252)
Q Consensus 140 s~t~iyn~Al~rIk~DprV~~~L 162 (252)
+....|=+.+.+|+.|.+|.+++
T Consensus 19 ~~K~aYi~~L~~Cktd~EV~evM 41 (53)
T d1r4ga_ 19 AEKAAYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp HHHHHHHHHHHTCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHH
Confidence 35788999999999999998876
No 5
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.02 E-value=17 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=20.5
Q ss_pred hhccCCcchHHHHHHHHHHhhchhHH
Q 025462 134 ELIFEPKEYKIFNKALKRIQDDGQVR 159 (252)
Q Consensus 134 ELf~s~s~t~iyn~Al~rIk~DprV~ 159 (252)
|-+........|.+||+.+++||.+.
T Consensus 71 ~~~~~~~k~~~f~~Av~e~e~~p~~~ 96 (100)
T d2nlua1 71 EKFGKPNKRKGFSEGLWEIENNPTVK 96 (100)
T ss_dssp HHHSCCSCCHHHHHHHHHHHTCSSCS
T ss_pred HHHhcccchHHHHHHHHHHHhCcccc
Confidence 33455566789999999999998765
No 6
>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}
Probab=19.57 E-value=1.3e+02 Score=23.67 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=26.7
Q ss_pred EEEcCCC-c-eEEEEEEEEcCCCCceEEEEEEEEECCCCceEEE
Q 025462 201 YIRGPHG-A-GKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 242 (252)
Q Consensus 201 ~VeGprg-~-G~V~lE~~K~~~~g~weY~yL~VdV~g~~~~~Ii 242 (252)
.|.|.-| + |+|.=-++. ..+|..+||.||+.+-.+..++
T Consensus 97 ~V~~~DG~~vGtV~Dv~vD---~~e~~vRYleVdtg~ggk~vLv 137 (201)
T d1eysh1 97 TVVGLDGEVAGTVSDVWVD---RSEPQIRYLEVEVAANKKKVLL 137 (201)
T ss_dssp EEECSSSCEEEEEEEEEEE---TTTTEEEEEEEEETTTCCEEEE
T ss_pred eeEcCCCCEEEEEEEEEEE---CCCCcEEEEEEEecCCCcEEEE
Confidence 3556555 3 777666666 4789999999999765545444
No 7
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Probab=18.48 E-value=72 Score=23.87 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=38.4
Q ss_pred eccccCccccccCc---------ccceEEecCCCceEEEEEEEEE-cCCCceEEEEEEEEcCCCCceEEEEEEE
Q 025462 168 GYGQESRNRAARQR---------IPNRVYTDEFGIEHVEVNFYIR-GPHGAGKVFTEMFKDKEDKQWKFTYLIV 231 (252)
Q Consensus 168 ayGe~s~nrw~Rnr---------I~s~~y~D~dG~eh~~m~F~Ve-Gprg~G~V~lE~~K~~~~g~weY~yL~V 231 (252)
..|..+++-|+.-- |.-+.| |.-..+|..++|+|. |.+.--.|...-..+.+..+|+|+.|..
T Consensus 62 EL~l~tastWkKFEVYE~dkKLPv~LVSY-d~v~kD~AYIRFpVSnGt~evKIVSSt~~~~~ee~~YDYT~mvF 134 (144)
T d2h3ka1 62 ELDINTASTWKKFEVYENNQKLPVRLVSY-SPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTKLVF 134 (144)
T ss_dssp EEEETTGGGCCCCCEEETTEEECCEEEEE-ECTTTCEEEEEEECCTTCCEEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred EEcccccceeeeeEEecCCccCceEEEec-CCCCCcceEEEEecCCCceEEEEEEEeeeCCCcccccceEEEEE
Confidence 34555555565421 223344 566688999999997 5566556665555554445677776654
No 8
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.11 E-value=1.3e+02 Score=19.40 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=27.0
Q ss_pred CCCceEEEEEEEE-E-cCCCceEEEEEEEEcCCCCceEEE
Q 025462 190 EFGIEHVEVNFYI-R-GPHGAGKVFTEMFKDKEDKQWKFT 227 (252)
Q Consensus 190 ~dG~eh~~m~F~V-e-Gprg~G~V~lE~~K~~~~g~weY~ 227 (252)
-+|.-+..+.|.- + |.+|.+.+++++..-..+...+.+
T Consensus 19 ~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~ 58 (69)
T d1iz6a1 19 IDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIV 58 (69)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEE
Confidence 4788888888744 4 456899999999876555555543
No 9
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.07 E-value=82 Score=21.22 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 025462 191 FGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 229 (252)
Q Consensus 191 dG~eh~~m~F~VeGprg~G~V~lE~~K~~~~g~weY~yL 229 (252)
-|...+ ...|+||.|+= +.+++.++ .+|.|+.+|.
T Consensus 33 aG~g~l--~v~i~~p~g~~-~~~~v~~~-~dG~y~v~y~ 67 (101)
T d2dj4a1 33 AGLAPL--EVRVLGPRGLV-EPVNVVDN-GDGTHTVTYT 67 (101)
T ss_dssp TCSCCE--EEEEECSSSCE-ECCCCEEC-SSSEEEEEEC
T ss_pred CCCCCE--EEEEEECCCCE-eEEEEEeC-CCCEEEEEEE
Confidence 355544 45688998763 55666554 5688876654
No 10
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=16.02 E-value=42 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.1
Q ss_pred cCCcchHHHHHHHHHHhhchhHHHhhCC
Q 025462 137 FEPKEYKIFNKALKRIQDDGQVRVRIGS 164 (252)
Q Consensus 137 ~s~s~t~iyn~Al~rIk~DprV~~~LGe 164 (252)
-...+...|.+|.+.+++||+...++.+
T Consensus 16 ~~s~ey~~~~~a~~~v~~D~ea~~l~~~ 43 (111)
T d2iaza1 16 RGLPEYKAVKAAKDAIAADAEASKIFTD 43 (111)
T ss_dssp HTSHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4445689999999999999999999964
Done!