BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025463
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
 pdb|1G67|B Chain B, Thiamin Phosphate Synthase
          Length = 225

 Score = 30.8 bits (68), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+++        SL+E VR +
Sbjct: 133 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 167


>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
 pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
 pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
 pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
          Length = 226

 Score = 30.4 bits (67), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+++        SL+E VR +
Sbjct: 134 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 168


>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
 pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
 pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
 pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
          Length = 227

 Score = 30.4 bits (67), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+++        SL+E VR +
Sbjct: 135 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169


>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
 pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
 pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
 pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
          Length = 227

 Score = 30.4 bits (67), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+++        SL+E VR +
Sbjct: 135 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169


>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
 pdb|1G69|B Chain B, Thiamin Phosphate Synthase
          Length = 228

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+++        SL+E VR +
Sbjct: 136 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 170


>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
           Synthase Complexed With A Carboxylated Thiazole
           Phosphate
          Length = 235

 Score = 30.4 bits (67), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+++        SL+E VR +
Sbjct: 143 DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 177


>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
           Synthase K159a
          Length = 235

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 8/35 (22%)

Query: 210 DGPDSMGFGPLVPTESER--------SLMERVRHE 236
           DG D +G GP+ PTE+ +        SL+E VR +
Sbjct: 143 DGADYVGLGPIYPTETAKDTRAVQGVSLIEAVRRQ 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,194,631
Number of Sequences: 62578
Number of extensions: 225348
Number of successful extensions: 592
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 7
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)