Query 025463
Match_columns 252
No_of_seqs 174 out of 260
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03791 KNOX2: KNOX2 domain ; 99.9 2E-26 4.4E-31 165.4 6.9 51 125-179 2-52 (52)
2 PF03790 KNOX1: KNOX1 domain ; 99.9 1.2E-23 2.5E-28 147.3 3.2 44 71-114 1-44 (45)
3 KOG0773 Transcription factor M 99.1 8E-12 1.7E-16 114.5 0.7 125 66-192 45-174 (342)
4 PF03789 ELK: ELK domain ; In 86.0 0.37 8.1E-06 29.7 0.9 14 236-249 1-14 (22)
5 KOG0774 Transcription factor P 72.1 32 0.0007 33.1 9.3 108 70-178 28-167 (334)
6 PF12022 DUF3510: Domain of un 71.8 18 0.00038 29.7 6.7 49 133-181 43-100 (125)
7 KOG4445 Uncharacterized conser 52.7 28 0.0006 34.1 5.2 46 133-180 135-180 (368)
8 PF11288 DUF3089: Protein of u 50.3 5.5 0.00012 35.9 0.1 29 70-102 110-138 (207)
9 PF03792 PBC: PBC domain; Int 49.3 55 0.0012 29.7 6.2 43 69-111 25-78 (191)
10 PF13097 CENP-U: CENP-A nucleo 45.6 57 0.0012 29.2 5.7 43 132-177 104-147 (175)
11 PF07425 Pardaxin: Pardaxin; 43.2 17 0.00037 24.2 1.5 19 73-91 5-23 (33)
12 PF05190 MutS_IV: MutS family 40.5 53 0.0011 23.9 4.1 25 129-153 1-25 (92)
13 PF09763 Sec3_C: Exocyst compl 34.5 1.3E+02 0.0028 31.0 7.1 87 80-176 510-615 (701)
14 KOG3622 Uncharacterized conser 34.4 68 0.0015 36.2 5.2 109 72-193 377-505 (1572)
15 PF06295 DUF1043: Protein of u 31.5 86 0.0019 25.9 4.3 35 139-177 35-69 (128)
16 KOG4460 Nuclear pore complex, 30.2 93 0.002 32.9 5.1 38 134-178 568-605 (741)
17 PLN02372 violaxanthin de-epoxi 27.2 1.8E+02 0.0039 29.6 6.4 88 56-178 309-396 (455)
18 COG4074 Mth H2-forming N5,N10- 26.5 66 0.0014 30.8 3.1 61 145-220 262-324 (343)
19 PHA03397 vlf-1 very late expre 26.1 63 0.0014 31.6 3.0 30 71-101 13-42 (363)
20 KOG2828 Acetyl-CoA hydrolase [ 25.5 43 0.00093 33.7 1.8 24 75-98 428-451 (454)
21 PF12220 U1snRNP70_N: U1 small 24.2 1.1E+02 0.0023 24.0 3.5 32 221-252 57-88 (94)
22 PF02290 SRP14: Signal recogni 23.7 64 0.0014 25.5 2.2 19 129-147 70-88 (93)
23 COG3105 Uncharacterized protei 23.3 2.2E+02 0.0049 24.7 5.5 43 132-178 37-79 (138)
24 PF11348 DUF3150: Protein of u 22.7 2.8E+02 0.0061 25.6 6.4 21 131-151 98-118 (257)
25 COG1497 Predicted transcriptio 22.1 79 0.0017 30.0 2.8 36 67-102 175-211 (260)
26 cd00669 Asp_Lys_Asn_RS_core As 21.8 74 0.0016 29.2 2.5 35 67-101 200-238 (269)
27 KOG3821 Heparin sulfate cell s 21.5 4E+02 0.0087 28.0 7.8 97 130-243 282-391 (563)
No 1
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=99.93 E-value=2e-26 Score=165.41 Aligned_cols=51 Identities=45% Similarity=0.674 Sum_probs=48.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhC
Q 025463 125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179 (252)
Q Consensus 125 ~~~ig~DPELDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg 179 (252)
++++|+||||||||++||.||+||||||+||| +||++|||+||+||++|||
T Consensus 2 ~~~~~~dpELDqFMeaYc~~L~kykeeL~~p~----~EA~~f~~~ie~qL~~Lt~ 52 (52)
T PF03791_consen 2 SSSIGADPELDQFMEAYCDMLVKYKEELQRPF----QEAMEFCREIEQQLSSLTG 52 (52)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999 6999999999999999996
No 2
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=99.88 E-value=1.2e-23 Score=147.34 Aligned_cols=44 Identities=34% Similarity=0.687 Sum_probs=41.4
Q ss_pred hhhhHHHhcCCChHHHHHHHHhhhcccCCCCchhhHHHHHhhhH
Q 025463 71 VKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSR 114 (252)
Q Consensus 71 ~~iKAkI~sHPlYp~LL~AyidCqKVGAPpevl~rLd~~~~~~q 114 (252)
+.|||+|++||+||+||+|||+|||||||||++++|++++++++
T Consensus 1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~~ 44 (45)
T PF03790_consen 1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAESQ 44 (45)
T ss_pred ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999988754
No 3
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=99.14 E-value=8e-12 Score=114.52 Aligned_cols=125 Identities=19% Similarity=0.190 Sum_probs=100.4
Q ss_pred hhhhhhhhhHHHhcCCChHHHHHHHHhhhcccCCCCchhhHHHHHhhhHHHHhhhhcccC-----CCCCCChhHHHHHHH
Q 025463 66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN-----GRVLDDKELDQFMTH 140 (252)
Q Consensus 66 ~~~e~~~iKAkI~sHPlYp~LL~AyidCqKVGAPpevl~rLd~~~~~~q~~~~k~s~~~~-----~~ig~DPELDqFMea 140 (252)
..+....+|+.+.+||+|..++.||++|++++.|.+.+.++.+.........+++...+. ...+.+++++.||..
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k 124 (342)
T KOG0773|consen 45 IMVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSK 124 (342)
T ss_pred cccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchH
Confidence 456677899999999999999999999999999999999977765543322222221111 136789999999999
Q ss_pred HHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCC
Q 025463 141 YVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD 192 (252)
Q Consensus 141 Yc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~Sp~egtgat~Sd 192 (252)
|+.+|..++..|+..+.+ ++|+.++++|+..+...++.++....+.+...
T Consensus 125 ~~~~ll~~~~~~~~~~~~--~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~ 174 (342)
T KOG0773|consen 125 LEKILLAVITKLTLTQVS--TWFANARRRLKKELKMTWGPTPLALDGISRHF 174 (342)
T ss_pred HHHHHHHHHHHhhhhhHH--HHHHHHHHHHHhccCCCCCCccccccchhhhh
Confidence 999999999999999733 89999999999999999999887665554443
No 4
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=86.02 E-value=0.37 Score=29.66 Aligned_cols=14 Identities=36% Similarity=0.306 Sum_probs=12.2
Q ss_pred HHHHHHhHHHhhhc
Q 025463 236 ELKHELKQVRVQNH 249 (252)
Q Consensus 236 elk~elkqg~~~k~ 249 (252)
|||++|+++|+..|
T Consensus 1 ELK~~LlrkY~g~i 14 (22)
T PF03789_consen 1 ELKHQLLRKYSGYI 14 (22)
T ss_pred CHHHHHHHHHhHhH
Confidence 68999999998876
No 5
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=72.14 E-value=32 Score=33.10 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=68.2
Q ss_pred hhhhhHHHhcCCChHHHHHHHHhhh----------cccCCCC-chhhHHHHHhhhHHH--Hhhh-----hcccCCCCCCC
Q 025463 70 TVKCKAEIVGHPLYEQLLSAHVSCL----------RIATPVD-QLPKIDAQLSRSRDV--LAKY-----SAVANGRVLDD 131 (252)
Q Consensus 70 ~~~iKAkI~sHPlYp~LL~AyidCq----------KVGAPpe-vl~rLd~~~~~~q~~--~~k~-----s~~~~~~ig~D 131 (252)
..+.|-.|-+||+||.|.+-.+.-. +=-.||| ++-|||.++-.- -+ ..+. .++|.+....-
T Consensus 28 aqa~K~~lnch~mk~AlfsVLcE~KeKt~lsir~~qdeep~dpqlmRLDnML~AE-GVagPekgga~~~~Asgg~hsdYR 106 (334)
T KOG0774|consen 28 AQARKHALNCHRMKPALFSVLCEIKEKTVLSIRGMQDEEPPDPQLMRLDNMLLAE-GVAGPEKGGARAAAASGGDHSDYR 106 (334)
T ss_pred HHhhhhccccccchHHHHHHHHHhhhhheeeeccccccCCCChHHHHHHHHHHHh-cccCccccchhhhhccCCChHHHH
Confidence 4478899999999999998776543 1236788 899999887531 11 0111 11121111122
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---hhHHh-----------hhhHHHHHHHHHHHHHHhhhh
Q 025463 132 KELDQFMTHYVLLLYSFKEQL---QQHVR-----------VHAMEAVMACWDLEQSLQSLT 178 (252)
Q Consensus 132 PELDqFMeaYc~mL~kYKEEL---~rP~r-----------~~a~EA~~F~~~IE~QL~sLt 178 (252)
..|-|.-.-|-..|.||.+.. +.+|. +.++|.-.|...|...++.++
T Consensus 107 ~kL~qiR~iy~~ElekyeqaCneftthV~nlL~eQsr~RPi~~ke~e~m~~~i~~kF~~iq 167 (334)
T KOG0774|consen 107 AKLLQIRQIYHNELEKYEQACNEFTTHVMNLLREQSRTRPIMPKEIERMVQIISKKFSHIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567777777888888887643 22221 356788888888888887776
No 6
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=71.80 E-value=18 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=33.8
Q ss_pred hHHHHHHHH---------HHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCC
Q 025463 133 ELDQFMTHY---------VLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVS 181 (252)
Q Consensus 133 ELDqFMeaY---------c~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~S 181 (252)
-|.+|.+.| .+++.+.-..++.-|...+.|...-.+++|.+|+.|=...
T Consensus 43 Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~evL~sv~KtEeSL~rlkk~~ 100 (125)
T PF12022_consen 43 PLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIASEVLTSVRKTEESLKRLKKRR 100 (125)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566555 3445555556666666666788888899999999997553
No 7
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=52.67 E-value=28 Score=34.08 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCC
Q 025463 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGV 180 (252)
Q Consensus 133 ELDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~ 180 (252)
+-|+||-.|| |.+|-.++.+-+|.++++|-.-...+-.|++.+|.+
T Consensus 135 ~C~Hy~H~~C--laRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpV 180 (368)
T KOG4445|consen 135 ACDHYMHFAC--LARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPV 180 (368)
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhH
Confidence 6799999999 567777777777777788888888999999999865
No 8
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=50.33 E-value=5.5 Score=35.92 Aligned_cols=29 Identities=38% Similarity=0.512 Sum_probs=26.1
Q ss_pred hhhhhHHHhcCCChHHHHHHHHhhhcccCCCCc
Q 025463 70 TVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQ 102 (252)
Q Consensus 70 ~~~iKAkI~sHPlYp~LL~AyidCqKVGAPpev 102 (252)
...||-+|..+|++.+|++||+ ||.|+-+
T Consensus 110 ~~LL~e~~~~~pl~~rLVAAYl----iG~~v~~ 138 (207)
T PF11288_consen 110 LRLLKEEIAGDPLRKRLVAAYL----IGYPVTV 138 (207)
T ss_pred HHHHHHHhcCchHHhhhheeee----cCccccH
Confidence 4589999999999999999999 9999754
No 9
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=49.25 E-value=55 Score=29.71 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=32.4
Q ss_pred hhhhhhHHHhcCCChHHHHHHHHhhh-ccc---------CCCC-chhhHHHHHh
Q 025463 69 ETVKCKAEIVGHPLYEQLLSAHVSCL-RIA---------TPVD-QLPKIDAQLS 111 (252)
Q Consensus 69 e~~~iKAkI~sHPlYp~LL~AyidCq-KVG---------APpe-vl~rLd~~~~ 111 (252)
+....|-.|-+||+||.|-+..++-. |++ .||| ++.|||.++.
T Consensus 25 eaqa~K~~l~~hr~k~ALfsVLcE~KEkt~LSir~~qee~p~dpQl~RLDNML~ 78 (191)
T PF03792_consen 25 EAQARKHALNCHRMKPALFSVLCEIKEKTVLSIRNIQEEDPPDPQLMRLDNMLL 78 (191)
T ss_pred HHHHhchhhcCCCCchhhHHHHHHHHhhcCccccccCCcCCCchhhhhhhcchh
Confidence 33678999999999999999987654 211 2444 7889998875
No 10
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=45.58 E-value=57 Score=29.18 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHH-HHHHHHHHHHhhh
Q 025463 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAV-MACWDLEQSLQSL 177 (252)
Q Consensus 132 PELDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~-~F~~~IE~QL~sL 177 (252)
-|||-...++-.++..||+.+.-.+- .+|+ .|+..+.-||-.+
T Consensus 104 tELDVvL~~FEk~~~eYkq~ieS~~c---r~AI~~F~~~~keqL~~~ 147 (175)
T PF13097_consen 104 TELDVVLSAFEKTALEYKQSIESKIC---RKAINKFYSNFKEQLIEM 147 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999988874 5554 5889998888655
No 11
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=43.23 E-value=17 Score=24.19 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.9
Q ss_pred hhHHHhcCCChHHHHHHHH
Q 025463 73 CKAEIVGHPLYEQLLSAHV 91 (252)
Q Consensus 73 iKAkI~sHPlYp~LL~Ayi 91 (252)
+--||++.|+|..||+|--
T Consensus 5 lipkiissplfktllsavg 23 (33)
T PF07425_consen 5 LIPKIISSPLFKTLLSAVG 23 (33)
T ss_dssp CHHHHCCTTTCHHHHHHHH
T ss_pred hhhHHHccHHHHHHHHHHH
Confidence 4468999999999998854
No 12
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=40.47 E-value=53 Score=23.92 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHh
Q 025463 129 LDDKELDQFMTHYVLLLYSFKEQLQ 153 (252)
Q Consensus 129 g~DPELDqFMeaYc~mL~kYKEEL~ 153 (252)
|-||+||+..+.|..+.....+.+.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~ 25 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLE 25 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999888766555443
No 13
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=34.54 E-value=1.3e+02 Score=31.00 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCChHHHHHHHHhhhcccCCCCch----------hhHHH---HHhhhHHHHhhhhcccC-CCC-----CCChhHHHHHHH
Q 025463 80 HPLYEQLLSAHVSCLRIATPVDQL----------PKIDA---QLSRSRDVLAKYSAVAN-GRV-----LDDKELDQFMTH 140 (252)
Q Consensus 80 HPlYp~LL~AyidCqKVGAPpevl----------~rLd~---~~~~~q~~~~k~s~~~~-~~i-----g~DPELDqFMea 140 (252)
-.-|.+|+.|-+++++..|+..-. .++.. ++.-...+...-+.... +++ .+....|+-+++
T Consensus 510 d~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l~~~~~~A~~~~~~~~~~ 589 (701)
T PF09763_consen 510 DKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVLEEFRKEAKQIYDEHLEA 589 (701)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 345999999999999988864321 12222 11112222222121111 111 223444455555
Q ss_pred HHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhh
Q 025463 141 YVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQS 176 (252)
Q Consensus 141 Yc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~s 176 (252)
|+..+ |.+|+ ..-..|+..+|.-+.+
T Consensus 590 Y~~~~------l~r~~----~kL~~F~~gve~l~~~ 615 (701)
T PF09763_consen 590 YVTFL------LRRPF----GKLLDFFEGVEALLQT 615 (701)
T ss_pred HHHHH------HhccH----HHHHHHHHHHHHHHhc
Confidence 55543 55676 7899999999999998
No 14
>KOG3622 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.36 E-value=68 Score=36.22 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=64.7
Q ss_pred hhhHHH---hcCCChHHHHHHHHhhh------------cccCCCCchhhHHHHHhhhHHHHhhhhc-----ccCCCCCCC
Q 025463 72 KCKAEI---VGHPLYEQLLSAHVSCL------------RIATPVDQLPKIDAQLSRSRDVLAKYSA-----VANGRVLDD 131 (252)
Q Consensus 72 ~iKAkI---~sHPlYp~LL~AyidCq------------KVGAPpevl~rLd~~~~~~q~~~~k~s~-----~~~~~ig~D 131 (252)
.+|..| -.|-.||++=.-|++=+ .+|+|.|-+=.|--+++ ..+-+.++.+ .+.+.....
T Consensus 377 qLr~aIS~LF~f~Rrp~~~~~F~ddl~~WLkkL~~vl~~~~~~~Dh~FLL~hILR-cP~gV~~WA~pFvQ~~~~s~~~n~ 455 (1572)
T KOG3622|consen 377 QLRTAISDLFYFLRRPRLSKRFIDDLVGWLKKLTCVLNMRQSCDDHIFLLCHILR-CPSGVDQWASPFVQTFIQSQSANK 455 (1572)
T ss_pred HHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHhcCCCCceehhhhhhh-CCCcchhhhhhhHhcccccccCCc
Confidence 355444 57888888766666533 47888887666655543 1222223321 111223566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCC
Q 025463 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDD 193 (252)
Q Consensus 132 PELDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~Sp~egtgat~Sdd 193 (252)
++||.||..-..+ -.|| +--..|++.+-+.=+.++.+.|+.||..-..||
T Consensus 456 ~~l~hcma~L~~L--------l~PV----K~R~efl~h~aqsere~SssgpgtgtW~ivd~d 505 (1572)
T KOG3622|consen 456 LKLDHCMALLTHL--------LNPV----KAREEFLRHVAQSEREESSSGPGTGTWEIVDDD 505 (1572)
T ss_pred hhhHHHHHHHHHH--------hhhh----HhHHHHHHhhhhhhcCcccCCCCCCcEEEecCC
Confidence 9999999765544 4566 455567788877777777555655555444443
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.47 E-value=86 Score=25.89 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhh
Q 025463 139 THYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSL 177 (252)
Q Consensus 139 eaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sL 177 (252)
+.=-.-|..||.++..|| ..+...+.+|...-+.|
T Consensus 35 ~~~k~el~~yk~~V~~HF----~~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 35 EQAKQELEQYKQEVNDHF----AQTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344456888999999987 77777777777665554
No 16
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.23 E-value=93 Score=32.92 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhh
Q 025463 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178 (252)
Q Consensus 134 LDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLt 178 (252)
..-|-|.|..-=-+-|+|+++|+ -..|+.+++||+.|.
T Consensus 568 ~~vfrEqYi~~~dlV~~e~qrH~-------~~l~~~k~~QlQ~l~ 605 (741)
T KOG4460|consen 568 TQVFREQYILKQDLVKEEIQRHV-------KLLCDQKKKQLQDLS 605 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45688999888888899999996 356899999999997
No 17
>PLN02372 violaxanthin de-epoxidase
Probab=27.19 E-value=1.8e+02 Score=29.59 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCCCCCCCcchhhhhhhhhHHHhcCCChHHHHHHHHhhhcccCCCCchhhHHHHHhhhHHHHhhhhcccCCCCCCChhHH
Q 025463 56 NSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELD 135 (252)
Q Consensus 56 ~~~~~~~g~~~~~e~~~iKAkI~sHPlYp~LL~AyidCqKVGAPpevl~rLd~~~~~~q~~~~k~s~~~~~~ig~DPELD 135 (252)
|.+++|+|++.-...+ -.-|.+.+|+|..++...-....++...-+ .-|..|+|
T Consensus 309 ndAwdgYgGAVvyTrs------------------------~~lP~~~~p~L~~Aa~kvG~df~~F~~tDN-sCgpep~l- 362 (455)
T PLN02372 309 NDAWDGYGGAVVYTRS------------------------STLPESIVPELEKAAKKVGRDFSDFVRTDN-TCGPEPPL- 362 (455)
T ss_pred ccccccccceEEEecC------------------------CCCChhhhHHHHHHHHHcCCCHHHheeeCC-CCCCCchH-
Confidence 3368888877665433 134666778888876553222334433333 34778888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhh
Q 025463 136 QFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178 (252)
Q Consensus 136 qFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLt 178 (252)
.+-|.|=-|+.++-+ .+|+...-.+||.+...|-
T Consensus 363 ------~~~l~~~~e~~e~~i---~~e~~~~~~e~~~~v~~~~ 396 (455)
T PLN02372 363 ------LERLEKDVEEGEKTI---VKEARQIEEELEKEVEKLG 396 (455)
T ss_pred ------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 667777777777777 4676666666666665553
No 18
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.55 E-value=66 Score=30.78 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=31.9
Q ss_pred HHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCccccccCCCCCCCCC--CCCCCCCCCCCC
Q 025463 145 LYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGS--LDGPDSMGFGPL 220 (252)
Q Consensus 145 L~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~Sp~egtgat~Sddede~~ds~~~~~d~~--~e~~d~~gfgpl 220 (252)
|..|++..++-+-..+.=|.+.-.+-=+|+..|.. ++..|--++..||. +.-.|+|-|||+
T Consensus 262 ll~yrdavt~ilgapadfaqmma~eal~qi~~lme---------------e~gidkmeealdpaallgtadsmnfgpl 324 (343)
T COG4074 262 LLTYRDAVTDILGAPADFAQMMAVEALQQIAKLME---------------EEGIDKMEEALDPAALLGTADSMNFGPL 324 (343)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH---------------HhhhhHHHhhcCHHHhhCccccccccch
Confidence 45688777665433333333333333355555541 11122222345655 445799999998
No 19
>PHA03397 vlf-1 very late expression factor 1; Provisional
Probab=26.14 E-value=63 Score=31.60 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.9
Q ss_pred hhhhHHHhcCCChHHHHHHHHhhhcccCCCC
Q 025463 71 VKCKAEIVGHPLYEQLLSAHVSCLRIATPVD 101 (252)
Q Consensus 71 ~~iKAkI~sHPlYp~LL~AyidCqKVGAPpe 101 (252)
...|.+|-+||+|+.....=++=||- +|++
T Consensus 13 ~~w~~~i~~~~~f~~~~~~~~~rq~~-~~~~ 42 (363)
T PHA03397 13 NIWKLVIQNHPRFEEVFDLAIDRQKC-TPDE 42 (363)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcC-CCcc
Confidence 47899999999999999999999994 4543
No 20
>KOG2828 consensus Acetyl-CoA hydrolase [Energy production and conversion]
Probab=25.47 E-value=43 Score=33.74 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.1
Q ss_pred HHHhcCCChHHHHHHHHhhhcccC
Q 025463 75 AEIVGHPLYEQLLSAHVSCLRIAT 98 (252)
Q Consensus 75 AkI~sHPlYp~LL~AyidCqKVGA 98 (252)
-+|..||.|..|+.+|.|-.||=.
T Consensus 428 I~i~~p~dre~L~k~afdr~kvmp 451 (454)
T KOG2828|consen 428 IQICAPPDREALLKAAFDRAKVMP 451 (454)
T ss_pred HHhhCCchHHHHHHHHHHHHhccc
Confidence 479999999999999999888743
No 21
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=24.22 E-value=1.1e+02 Score=23.99 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.6
Q ss_pred CCChhhhHHHHHHHHHHHHHHhHHHhhhccCC
Q 025463 221 VPTESERSLMERVRHELKHELKQVRVQNHLHW 252 (252)
Q Consensus 221 ~pt~~eR~Lkerl~relk~elkqg~~~k~l~w 252 (252)
.++++-.+.++|.++|-+.+..+-.++.|-.|
T Consensus 57 ~~~et~~e~~~r~~~ek~~~~~~~l~~~l~~w 88 (94)
T PF12220_consen 57 EPTETKEERRERKRKEKKEKNEEKLEEELKEW 88 (94)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888999999999998888888888888777
No 22
>PF02290 SRP14: Signal recognition particle 14kD protein; InterPro: IPR003210 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 14 kDa SRP14 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0030942 endoplasmic reticulum signal peptide binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0005786 signal recognition particle, endoplasmic reticulum targeting; PDB: 1914_A 1RY1_D 1E8O_B 2W9J_B.
Probab=23.69 E-value=64 Score=25.47 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=15.7
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 025463 129 LDDKELDQFMTHYVLLLYS 147 (252)
Q Consensus 129 g~DPELDqFMeaYc~mL~k 147 (252)
..-.+|+.|..+|+.+|..
T Consensus 70 V~~~~l~~F~~~Y~~v~K~ 88 (93)
T PF02290_consen 70 VDPDDLDKFWQSYANVLKA 88 (93)
T ss_dssp EETTCHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHh
Confidence 4457999999999999864
No 23
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.33 E-value=2.2e+02 Score=24.72 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhh
Q 025463 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178 (252)
Q Consensus 132 PELDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLt 178 (252)
.-|-.=|+.--.-|-.||+||.+|| .+....++.|-+.-+.|-
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HF----a~sAeLlktl~~dYqkly 79 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHF----ARSAELLKTLAQDYQKLY 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3444556677778999999999998 788888888877766653
No 24
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.65 E-value=2.8e+02 Score=25.63 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q 025463 131 DKELDQFMTHYVLLLYSFKEQ 151 (252)
Q Consensus 131 DPELDqFMeaYc~mL~kYKEE 151 (252)
+.+-++|+..|=..+..+..+
T Consensus 98 ~~~k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 98 EQEKQDFLANYDQAIEEWIDR 118 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888777777776
No 25
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=22.06 E-value=79 Score=29.96 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=28.7
Q ss_pred hhhhhhhhHHHhcCCChHHH-HHHHHhhhcccCCCCc
Q 025463 67 DWETVKCKAEIVGHPLYEQL-LSAHVSCLRIATPVDQ 102 (252)
Q Consensus 67 ~~e~~~iKAkI~sHPlYp~L-L~AyidCqKVGAPpev 102 (252)
....+++|+.+.+||..-.. ..||+.|.|+|--||+
T Consensus 175 ~~dld~~~el~~s~d~iaAmG~~a~va~rklgiePdi 211 (260)
T COG1497 175 KVDLDRLKELSASEDIIAAMGTEALVALRKLGIEPDI 211 (260)
T ss_pred ccchHHHHHhhcccchhhhhhHHHHHHHHHcCCCCCe
Confidence 34567999999999944333 5789999999999975
No 26
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=21.78 E-value=74 Score=29.22 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=29.1
Q ss_pred hhhhhhhhHHHhcCCChHH----HHHHHHhhhcccCCCC
Q 025463 67 DWETVKCKAEIVGHPLYEQ----LLSAHVSCLRIATPVD 101 (252)
Q Consensus 67 ~~e~~~iKAkI~sHPlYp~----LL~AyidCqKVGAPpe 101 (252)
.+.-+.+++++..|-.-+. ...-|+++.|-|.||-
T Consensus 200 ~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~ 238 (269)
T cd00669 200 LHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPH 238 (269)
T ss_pred cCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCC
Confidence 4566788999988888887 7888999999999974
No 27
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=21.48 E-value=4e+02 Score=27.97 Aligned_cols=97 Identities=24% Similarity=0.367 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhH---------HhhhhHHHHHHHH----HHHHHHhhhhCCCCCCCCCCCCCCCccc
Q 025463 130 DDKELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACW----DLEQSLQSLTGVSPGESTGATMSDDDED 196 (252)
Q Consensus 130 ~DPELDqFMeaYc~mL~kYKEEL~rP---------~r~~a~EA~~F~~----~IE~QL~sLtg~Sp~egtgat~Sddede 196 (252)
.--+||-=-.+|.+-|.+.-+.|..| +.|-+-||+|.+. +|+++....||.+...-++. ...+++
T Consensus 282 ~~adLd~~W~~~idSl~~L~~~l~g~~~iesvl~~i~v~iseAIm~~q~N~~~lt~kV~q~Cg~p~~~p~~~--~~~~~~ 359 (563)
T KOG3821|consen 282 NQADLDPEWRNYIDSLLELADKLEGPFNIESVLLPIHVKISEAIMAAQENSDKLTAKVFQGCGPPKPTPARR--PPESED 359 (563)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcCcchHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHhhcCCCCCCcccC--CCCchh
Confidence 34458888899999999999888765 4577889999886 58888889998654322221 111111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHhH
Q 025463 197 QVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243 (252)
Q Consensus 197 ~~ds~~~~~d~~~e~~d~~gfgpl~pt~~eR~Lkerl~relk~elkq 243 (252)
-+.... ... +||...-+.-+|+++|+|.+||+
T Consensus 360 ------~f~~~~---~~~------~~~~~~~~~L~~~~~e~~~kL~~ 391 (563)
T KOG3821|consen 360 ------RFKPKH---PEE------RPTTAAGTTLDRLVTEFKEKLKL 391 (563)
T ss_pred ------hcCCCC---ccc------CCcCCCcchHHHHHHHHHHHHHH
Confidence 111111 111 77877888889999999999985
Done!