Query 025463
Match_columns 252
No_of_seqs 174 out of 260
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 70.2 5.4 0.00018 35.1 4.9 42 139-182 82-123 (204)
2 1xc0_A Pardaxin P-4, PA4; BEND 45.5 11 0.00037 24.2 1.8 19 73-91 5-23 (33)
3 1zzp_A P150, C-ABL, proto-onco 32.4 26 0.00088 28.8 2.6 42 140-186 63-104 (130)
4 2w9j_A Signal recognition part 26.9 32 0.0011 26.3 2.1 20 129-148 62-81 (91)
5 1e8o_B SRP14, signal recogniti 26.6 30 0.001 27.0 2.0 20 128-147 69-88 (106)
6 1ngm_B Transcription factor II 26.1 86 0.0029 23.3 4.3 21 221-241 40-60 (72)
7 1cxz_B Protein (PKN); protein- 23.8 54 0.0018 25.1 2.9 19 227-245 24-44 (86)
8 2izy_A CAMP-dependent protein 22.8 1.6E+02 0.0055 20.1 4.9 23 133-155 28-50 (54)
9 3j0g_M E3 protein; alphavirus, 19.4 47 0.0016 24.1 1.6 23 72-94 32-54 (59)
10 3fp5_A Acyl-COA binding protei 18.7 1.3E+02 0.0044 23.4 4.2 33 134-172 73-105 (106)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=70.21 E-value=5.4 Score=35.11 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCCC
Q 025463 139 THYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSP 182 (252)
Q Consensus 139 eaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~Sp 182 (252)
-.|-.-|-....-|+.|. ...|++.+++++-..|+++|+..|
T Consensus 82 l~YLkkLD~l~~~Lq~h~--~Lse~l~l~kqLs~sLh~mC~~~p 123 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHS--QLTEALSLGKRLSKSLHEMCGIEP 123 (204)
T ss_dssp HHHHHHHHHHHHTCSSSS--HHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468888888888999986 488999999999999999997655
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=45.51 E-value=11 Score=24.19 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.8
Q ss_pred hhHHHhcCCChHHHHHHHH
Q 025463 73 CKAEIVGHPLYEQLLSAHV 91 (252)
Q Consensus 73 iKAkI~sHPlYp~LL~Ayi 91 (252)
+--||++.|+|..||+|--
T Consensus 5 lipkiissplfktllsavg 23 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVG 23 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHH
T ss_pred hhhHHHccHHHHHHHHHHH
Confidence 3468999999999998854
No 3
>1zzp_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; four helix bundle, nuclear export signal, transferase; NMR {Homo sapiens}
Probab=32.41 E-value=26 Score=28.84 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCCCCCCC
Q 025463 140 HYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEST 186 (252)
Q Consensus 140 aYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~Sp~egt 186 (252)
.||.--+.--+++..+| -|.||+ +++|..|+.|-..+.+.|.
T Consensus 63 ~yC~~yvd~i~Q~Rnkf--afreAv---~klE~sl~elq~~~a~~gg 104 (130)
T 1zzp_A 63 SFCVSYVDSIQQMRNKF--AFREAI---NKLENNLRELQICPATAGS 104 (130)
T ss_dssp HHHHHHGGGCSCSTTHH--HHHHHH---HHHHHHHHHHSCCSSSSCS
T ss_pred HhccccccchHHHhhhH--HHHHHH---HHhhcCHHHHhcCccccCC
Confidence 45555555567788887 467775 9999999999877665444
No 4
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=26.92 E-value=32 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=16.6
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 025463 129 LDDKELDQFMTHYVLLLYSF 148 (252)
Q Consensus 129 g~DPELDqFMeaYc~mL~kY 148 (252)
..-.+|+.|+.+|+.+|..-
T Consensus 62 V~~~~l~~F~~~Y~~v~K~~ 81 (91)
T 2w9j_A 62 VELDYFTDFFQSYAEVXKGQ 81 (91)
T ss_dssp EEGGGHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhC
Confidence 44579999999999998754
No 5
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=26.58 E-value=30 Score=26.96 Aligned_cols=20 Identities=35% Similarity=0.570 Sum_probs=16.5
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 025463 128 VLDDKELDQFMTHYVLLLYS 147 (252)
Q Consensus 128 ig~DPELDqFMeaYc~mL~k 147 (252)
+..-.+|+.|+.+|+.+|..
T Consensus 69 vV~~~dl~~F~~~Y~~v~K~ 88 (106)
T 1e8o_B 69 VVSSKEVNKFQMAYSNLLRA 88 (106)
T ss_dssp EEETTTHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHh
Confidence 34557999999999999865
No 6
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=26.12 E-value=86 Score=23.29 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=17.4
Q ss_pred CCChhhhHHHHHHHHHHHHHH
Q 025463 221 VPTESERSLMERVRHELKHEL 241 (252)
Q Consensus 221 ~pt~~eR~Lkerl~relk~el 241 (252)
+-+++|..+|++++-++.++-
T Consensus 40 iLteeEv~~K~~iW~~~N~dy 60 (72)
T 1ngm_B 40 LLNEEASKLKERIWIGLNADF 60 (72)
T ss_dssp SCCHHHHHHHHHHHHHHTTTH
T ss_pred hCCHHHHHHHHHHHHHHhHHH
Confidence 678999999999988776554
No 7
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=23.77 E-value=54 Score=25.09 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHh--HHH
Q 025463 227 RSLMERVRHELKHELK--QVR 245 (252)
Q Consensus 227 R~Lkerl~relk~elk--qg~ 245 (252)
.++++++++|+++||| .||
T Consensus 24 e~~r~~ir~eI~KElKiKeGa 44 (86)
T 1cxz_B 24 ELERERLRREIRKELKLKEGA 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhH
Confidence 4678889999999987 664
No 8
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=22.84 E-value=1.6e+02 Score=20.14 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhH
Q 025463 133 ELDQFMTHYVLLLYSFKEQLQQH 155 (252)
Q Consensus 133 ELDqFMeaYc~mL~kYKEEL~rP 155 (252)
.+=+|...|-.-|.+.+++|..+
T Consensus 28 Di~~Faa~YF~~L~~~~~~~~~~ 50 (54)
T 2izy_A 28 DLVDFAVEYFTRLREARRGLEHH 50 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHhhc
Confidence 45689999999999999999876
No 9
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=19.41 E-value=47 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=18.7
Q ss_pred hhhHHHhcCCChHHHHHHHHhhh
Q 025463 72 KCKAEIVGHPLYEQLLSAHVSCL 94 (252)
Q Consensus 72 ~iKAkI~sHPlYp~LL~AyidCq 94 (252)
+|=..=+.||-|-.||.|-+.|.
T Consensus 32 ~mLe~Nvd~pgY~~LL~a~l~C~ 54 (59)
T 3j0g_M 32 AMLSVNVDNPGYDELLEAAVKCP 54 (59)
T ss_dssp HHHHHTSSSTTHHHHHHHHHSCC
T ss_pred HHHHHhCCCccHHHHHHHHhcCc
Confidence 34445578999999999999994
No 10
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=18.74 E-value=1.3e+02 Score=23.37 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHH
Q 025463 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQ 172 (252)
Q Consensus 134 LDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~ 172 (252)
-++=|..|+.++.+....-. ..||..++.+||.
T Consensus 73 ~eeA~~~YI~~v~~l~~~~~------~~~~~~~~~~le~ 105 (106)
T 3fp5_A 73 KEVAYQKYVEKLLEILKKAD------TEESKKYIAEIEA 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC------cHHHHHHHHHHhc
Confidence 46779999999998877722 2589888988884
Done!