BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025464
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGA 77
+A +AEF +MI+F+F GS + F +T A + ++ AF L +A SVG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG- 70
Query: 78 NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---A 134
+ISG H+NPAVT G + I++LR+I+Y IAQ +G++VA +L T L ++ A
Sbjct: 71 HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130
Query: 135 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFD 194
L+ GV+S + EI+ T LV V AT D ++ +LG P+AIGF V L +
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189
Query: 195 GASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
G +NPA SFG +V++ + +HW++W+GPFIGAA+A ++YD I
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 11/221 (4%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+A AEFF+ + +VF G G+ + + A P ++ +LA AL V +IS
Sbjct: 11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 137
G HVNPAVTF VG ++LLR+I Y +AQLLG+V +L T AL++
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 138 GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 197
GVS A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 182
Query: 198 MNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
MNPA SF PA+++ +TNHWVYW+GP IGA + +++YD +
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 11/221 (4%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+A AEFF+ + +VF G G+ + + A P ++ +LA AL V +IS
Sbjct: 11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 137
G HVNPAVTF VG ++LLR+I Y +AQLLG+V +L T AL++
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 138 GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 197
GVS A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 182
Query: 198 MNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
MNPA SF PA+++ +TNHWVYW+GP IGA + +++YD +
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 11/221 (4%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+A AEFF+ + +VF G G+ + + A P ++ +LA AL V +IS
Sbjct: 7 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 59
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 137
G HVNPAVTF VG ++LLR+I Y +AQLLG+V +L T AL++
Sbjct: 60 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 119
Query: 138 GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 197
GVS A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 120 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 178
Query: 198 MNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
MNPA SF PA+++ +TNHWVYW+GP IGA + +++YD +
Sbjct: 179 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 11/220 (5%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+A AEFF+ + +VF G G+ + + A P ++ +LA AL V +IS
Sbjct: 5 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 57
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 137
G HVNPAVTF VG ++LLR+I Y +AQLLG+V +L T AL++
Sbjct: 58 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 117
Query: 138 GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGAS 197
GVS A + EI +T V ++AT + + G LG++A +A+GF + L G + GA
Sbjct: 118 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAG 176
Query: 198 MNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 237
MNPA SF PA+++ +TNHWVYW+GP IGA + +++YD +
Sbjct: 177 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 216
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 15/228 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP--AGLISASLAHAFALFVAVSVGAN 78
KA AEF +M+IFV GS + + GG+ P ++ SL ++ V +
Sbjct: 53 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGH 107
Query: 79 ISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAF 133
ISGGH+NPAVT I++ +S+ Y AQ LG+++ +L T GGL +
Sbjct: 108 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT- 166
Query: 134 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAF 193
+ +++ + ++ E+++TF LV+T++A+ D + G++A +AIGF V L +
Sbjct: 167 -VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINY 224
Query: 194 DGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 241
GASMNPA SFGPAV+ W NHW+YW+GP IGA +A +Y+++F D
Sbjct: 225 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 272
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 6/222 (2%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFAL-FVAVSVGANI 79
+A +AEF + +FVF GS + F + + SLA ++ +A SVG +I
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVG-HI 70
Query: 80 SGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LS 136
SG H+NPAVT G + I++ R+++Y IAQ +G++VA +L T L ++ L+
Sbjct: 71 SGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLA 130
Query: 137 SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGA 196
GV+S + EI+ T LV V AT D ++ +LG AP+AIG V L + G
Sbjct: 131 DGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGC 189
Query: 197 SMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
+NPA SFG AV++ ++NHW++W+GPFIG A+A ++YD I
Sbjct: 190 GINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFIL 231
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 15/228 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP--AGLISASLAHAFALFVAVSVGAN 78
KA AEF +M+IFV GS + + GG+ P ++ SL ++ V +
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGH 68
Query: 79 ISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAF 133
ISGGH+NPAVT I++ +S+ Y AQ LG+++ +L T GGL +
Sbjct: 69 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT- 127
Query: 134 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAF 193
+ +++ + ++ E+++TF LV+T++A+ D + G++A +AIGF V L +
Sbjct: 128 -VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINY 185
Query: 194 DGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 241
GASMNPA SFGPAV+ W NHW+YW+GP IGA +A +Y+++F D
Sbjct: 186 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 15/228 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP--AGLISASLAHAFALFVAVSVGAN 78
KA AEF +M+IFV GS + + GG+ P ++ SL ++ V +
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGH 68
Query: 79 ISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAF 133
ISGGH+NPAVT I++ +S+ Y AQ LG+++ +L T GGL +
Sbjct: 69 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT- 127
Query: 134 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAF 193
+ +++ + ++ E+++TF LV+T++A+ D K+ ++ +AIGF V L +
Sbjct: 128 -VHGNLTAGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSVALAIGFSVAIGHLFAINY 185
Query: 194 DGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 241
GASMNPA SFGPAV+ W NHW+YW+GP IGA +A +Y+++F D
Sbjct: 186 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 15/225 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP--AGLISASLAHAFALFVAVSVGAN 78
KA AEF +M+IFV GS + + GG P ++ SL ++ V +
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINW-----GGTEKPLPVDMVLISLCFGLSIATMVQCFGH 59
Query: 79 ISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAF 133
ISGGH+NPAVT I++ +S+ Y AQ LG+++ +L T GGL +
Sbjct: 60 ISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTM- 118
Query: 134 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAF 193
+ +++ + ++ E+++TF LV+T++A+ + G+IA +AIGF V L +
Sbjct: 119 -VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINY 176
Query: 194 DGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
GASMNPA SFGPAV+ W NHW+YW+GP IGA +A +Y+++F
Sbjct: 177 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 134/229 (58%), Gaps = 14/229 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+AA+AEF + ++F++ + + SK T S GL+ + A +FV V A IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 136
GGH+NPAVTFG F+ ++LLR+++Y IAQ LG++ L+K F G A +++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 137 SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGA 192
G + A+ EI+ TF LVYTV+ +A DPK+ ++ +AP+ IGF V LA
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 193 FDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
G +NPA SFG AV+ + W + W++W+GPFIGAA+AA + ++
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 264
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 134/229 (58%), Gaps = 14/229 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+AA+AEF + ++F++ + + SK T S GL+ + A +FV V A IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 136
GGH+NPAVTFG F+ ++LLR+++Y IAQ LG++ L+K F G A +++
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 137 SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGA 192
G + A+ EI+ TF LVYTV+ +A DPK+ ++ +AP+ IGF V LA
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 193 FDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
G +NPA SFG AV+ + W + W++W+GPFIGAA+AA + ++
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 287
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 134/229 (58%), Gaps = 14/229 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+AA+AEF + ++F++ + + SK T S GL+ + A +FV V A IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 136
GGH+NPAVTFG F+ ++LLR+++Y IAQ LG++ L+K F G A +++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 137 SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGA 192
G + A+ EI+ TF LVYTV+ +A DPK+ ++ +AP+ IGF V LA
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 193 FDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
G +NPA SFG AV+ + W + W++W+GPFIGAA+AA + ++
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 264
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 14/229 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+AA+AEF + ++F++ + + SK T S GL+ + A +FV V A IS
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 136
GGH+NPAVTFG F+ + LLR+++Y IAQ LG++ L+K F G A +++
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 137 SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGA 192
G + A+ EI+ TF LVYTV+ +A DPK+ ++ +AP+ IGF V LA
Sbjct: 176 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 234
Query: 193 FDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
G +NPA SFG AV+ + W + W++W+GPFIGAA+AA + ++
Sbjct: 235 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 283
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 14/229 (6%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80
+AA+AEF + ++F++ + + SK T S GL+ + A +FV V A IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSV--GLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 136
GGH+NPAVTFG F+ + LLR+++Y IAQ LG++ L+K F G A +++
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 137 SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGA 192
G + A+ EI+ TF LVYTV+ +A DPK+ ++ +AP+ IGF V LA
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 193 FDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
G +NPA SFG AV+ + W + W++W+GPFIGAA+AA + ++
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 287
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 20 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANI 79
LKA AEF + +IFVF G GS + + S ++ +LA A+ +
Sbjct: 12 LKAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQIALAFGLAIGTLAQALGPV 64
Query: 80 SGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS----AFAL 135
SGGH+NPA+T VG I+LLR+ Y AQL+G++ +L + L AL
Sbjct: 65 SGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL-YGVAPLNARGNLAVNAL 123
Query: 136 SSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDG 195
++ + A+V E+++TF L ++A+ + +G+ A ++IG V L G F G
Sbjct: 124 NNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTG 182
Query: 196 ASMNPAVSFGPAVVSWTWT-NHWVYWLGPFIGAAIAAIVYDHIFIDDN 242
SMNPA SFGPAVV ++ HWV+W+GP +GA +AAI+Y ++ ++
Sbjct: 183 CSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 230
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 111/244 (45%), Gaps = 33/244 (13%)
Query: 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGAS------------TPAGLISASLAHAFA 68
K +AEF I VF G GS + GG S ++ LA FA
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFA 65
Query: 69 LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL------- 121
+ ++ NISG H+NPAVT G + + Y IAQLLG+ +
Sbjct: 66 IAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG 125
Query: 122 KFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPK--KGNLGTIAPIAI 179
+ GGL A A G+S W A++ E+V TF L+ T+ AVD + KG G I I
Sbjct: 126 AATVGGL--GATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGII----I 179
Query: 180 GFIVGANILAGGAFDGASMNPAVSFGPAVVSWT------WTNHWVYWLGPFIGAAIAAIV 233
G V I G G+S+NPA +FGP + W + +Y +GP +GA +AA+
Sbjct: 180 GLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALT 239
Query: 234 YDHI 237
Y ++
Sbjct: 240 YQYL 243
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 89/189 (47%), Gaps = 3/189 (1%)
Query: 48 TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYW 107
T G S PA LI S F + V V + +SGG++NPAVT + I R IL
Sbjct: 75 TPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMA 134
Query: 108 IAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPK 167
Q++ + A T G A AL G S + E T L TV AV+
Sbjct: 135 FTQIVAGMAAAGAASAMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKH 194
Query: 168 KGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTN-HWVYWLGPFIG 226
+ AP IG + L + GA +NPA SFGPAV + ++ N HW+YWLGP +G
Sbjct: 195 RATW--FAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILG 252
Query: 227 AAIAAIVYD 235
A +A ++
Sbjct: 253 AFLAYSIWQ 261
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 62 SLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACL 119
++ AFAL +A + + ISG H+NPAVT + G + Y +AQ +G+ + L
Sbjct: 58 AIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSL 117
Query: 120 LLKFSTGGLETSAFALSS-----GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTI 174
L G + L + G+ A++ E + TF L+ + AVD +
Sbjct: 118 LFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPP--GF 175
Query: 175 APIAIGFIVGANILAGGAFDGASMNPAVSFGPAV-VSWTWTNHW----VYWLGPFIGAAI 229
A + IG VG I G G+S+NPA +FGP + S N W +Y +GP +GA
Sbjct: 176 AGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVA 235
Query: 230 AAIVYDHI 237
AA +Y+++
Sbjct: 236 AAWLYNYL 243
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 105/233 (45%), Gaps = 31/233 (13%)
Query: 21 KAALAEFFSMIIFVFAGQGSGM---AFSKLTDG--GASTPAGLISASLAHAFALFVAVSV 75
+ LAEFF VF G GS + AF +L G G + GL ++A+A
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVG------- 83
Query: 76 GANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGS--------VVACLLLKFSTGG 127
ISGGH NPAV+ G V G + Y IAQ+ G+ V+A GG
Sbjct: 84 --GISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGG 141
Query: 128 LETSAFALSS--GVSSWNAVVFEIVMT-FGLVYTVYATAVDPKKGNLGTIAPIAIGFIVG 184
++ + S G S +A++ EI++T F L+ + +T G APIAIG +
Sbjct: 142 FASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG----FAPIAIGLALT 197
Query: 185 ANILAGGAFDGASMNPAVSFGPA--VVSWTWTNHWVYWLGPFIGAAIAAIVYD 235
L S+NPA S G A V W W++WL P +G A A+++
Sbjct: 198 LIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWK 250
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 14 ASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFV-- 71
ASH + AE F VF G GS + + + G+ A +A AF L V
Sbjct: 1 ASH--MFRKLAAESFGTFWLVFGGSGSAVLAAGFPE------LGIGFAGVALAFGLTVLT 52
Query: 72 -AVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGG 127
A +VG +ISGGH NPAVT G + GG + Y IAQ++G +VA LL G
Sbjct: 53 MAFAVG-HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTG 111
Query: 128 LETSAFALSS---------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIA 178
+ +A +S G S +A+V E+V++ G + ++ A D K APIA
Sbjct: 112 FDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIA 168
Query: 179 IGFIVGANILAGGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
IG + L S+NPA S A+ W W +W
Sbjct: 169 IGLALTLIHLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 27/213 (12%)
Query: 25 AEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFV---AVSVGANISG 81
AE F VF G GS + + + G+ A +A AF L V A +VG +ISG
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG-HISG 62
Query: 82 GHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGGLETSAFALSS- 137
GH NPAVT G + GG + Y IAQ++G +VA LL G + +A +S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 138 --------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILA 189
G S +A+V E+V++ G + ++ A D K APIAIG + L
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIAIGLALTLIHLI 179
Query: 190 GGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
S+NPA S A+ W W +W
Sbjct: 180 SIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 14 ASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFV-- 71
ASH + AE F VF G GS + + + G+ A +A AF L V
Sbjct: 1 ASH--MFRKLAAESFGTFWLVFGGSGSAVLAAGFPE------LGIGFAGVALAFGLTVLT 52
Query: 72 -AVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGG 127
A +VG +ISGGH NPAVT G + GG + Y IAQ++G +VA LL G
Sbjct: 53 MAFAVG-HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTG 111
Query: 128 LETSAFALSS---------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIA 178
+ +A +S G S +A+V E+V++ G + ++ A D K APIA
Sbjct: 112 FDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIA 168
Query: 179 IGFIVGANILAGGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
IG L S+NPA S A+ W W +W
Sbjct: 169 IGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 27/213 (12%)
Query: 25 AEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFV---AVSVGANISG 81
AE F VF G GS + + + G+ A +A AF L V A +VG +ISG
Sbjct: 7 AECFGTFWLVFGGCGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG-HISG 59
Query: 82 GHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGGLETSAFALSS- 137
GH NPAVT G + GG + Y IAQ++G +VA LL G + +A +S
Sbjct: 60 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 119
Query: 138 --------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILA 189
G S +A+V E+V++ G + ++ A D K APIAIG + L
Sbjct: 120 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIAIGLALTLIHLI 176
Query: 190 GGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
S+NPA S A+ W W +W
Sbjct: 177 SIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 93/221 (42%), Gaps = 23/221 (10%)
Query: 14 ASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV 73
ASH + AE F VF G GS + L G + G +LA +
Sbjct: 1 ASH--MFRKLAAECFGTFWLVFGGCGSAV----LAAGFPALGIGFAGVALAWGLTVLTMA 54
Query: 74 SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGGLET 130
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G +
Sbjct: 55 FAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDA 114
Query: 131 SAFALSS---------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 181
+A +S G S +A+V E+V++ G + ++ A D K APIAIG
Sbjct: 115 AASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIAIGL 171
Query: 182 IVGANILAGGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
+ L S+NPA S A+ W W +W
Sbjct: 172 ALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 14 ASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFV-- 71
ASH + AE F VF G GS + + + G+ A +A AF L V
Sbjct: 1 ASH--MFRKLAAECFGTFWLVFGGCGSAVLAAGFPE------LGIGFAGVALAFGLTVLT 52
Query: 72 -AVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGG 127
A +VG +ISGGH NPAVT G + GG + Y IAQ++G +VA LL G
Sbjct: 53 MAFAVG-HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTG 111
Query: 128 LETSAFALSS---------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIA 178
+ +A +S G S +A+V E+V++ G + ++ A D K APIA
Sbjct: 112 FDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIA 168
Query: 179 IGFIVGANILAGGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
IG + L S+NPA S A+ W W +W
Sbjct: 169 IGLALTLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 23/221 (10%)
Query: 14 ASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV 73
ASH + AE F VF G GS + L G G +LA +
Sbjct: 1 ASH--MFRKLAAECFGTFWLVFGGCGSAV----LAAGFPELGIGFAGVALAWGLTVLTMA 54
Query: 74 SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF---STGGLET 130
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G +
Sbjct: 55 FAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDA 114
Query: 131 SAFALSS---------GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGF 181
+A +S G S +A+V E+V++ G + ++ A D K APIAIG
Sbjct: 115 AASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATD--KFAPAGFAPIAIGL 171
Query: 182 IVGANILAGGAFDGASMNPAVSFGPAVVS--WTWTNHWVYW 220
+ L S+NPA S A+ W W +W
Sbjct: 172 ALTLIGLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 40/258 (15%)
Query: 15 SHPDALK-AALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV 73
S LK +AEF + +F G G + L GAS G S+ + +A+
Sbjct: 2 SQTSTLKGQCIAEFLGTGLLIFFGVG---CVAALKVAGASF--GQWEISVIFGLGVAMAI 56
Query: 74 SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL------------ 121
+ A +SG H+NPAVT ++ + I + ++Q+ G+ A L+
Sbjct: 57 YLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFE 116
Query: 122 ---KFSTGGLETSAFA------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG 172
G +E+ A + ++ A E+V+T L+ + A D G
Sbjct: 117 QTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG 176
Query: 173 TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWT--WTN-----------HWVY 219
+AP+ IG ++ + G G +MNPA FGP V +W W N V
Sbjct: 177 PLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVP 236
Query: 220 WLGPFIGAAIAAIVYDHI 237
GP +GA + A Y +
Sbjct: 237 LFGPIVGAIVGAFAYRKL 254
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 40/258 (15%)
Query: 15 SHPDALK-AALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV 73
S LK +AEF + +F G G + L GAS G S+ + +A+
Sbjct: 2 SQTSTLKGQCIAEFLGTGLLIFFGVG---CVAALKVAGASF--GQWEISVIWGLGVAMAI 56
Query: 74 SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL------------ 121
+ A +SG H+NPAVT ++ + I + ++Q+ G+ A L+
Sbjct: 57 YLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFE 116
Query: 122 ---KFSTGGLETSAFA------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG 172
G +E+ A + ++ A E+V+T L+ + A D G
Sbjct: 117 QTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG 176
Query: 173 TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWT--WTN-----------HWVY 219
+AP+ IG ++ + G G +MNPA FGP V +W W N V
Sbjct: 177 PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVP 236
Query: 220 WLGPFIGAAIAAIVYDHI 237
GP +GA + A Y +
Sbjct: 237 LFGPIVGAIVGAFAYRKL 254
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 16 HPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSV 75
+ ++ + EF + +F G+G+ F T G + L L A+F + V
Sbjct: 6 YKSYVREFIGEFLGTFVLMFLGEGATANFH--TTGLSGDWYKL---CLGWGLAVFFGILV 60
Query: 76 GANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVV 116
A +SG H+N AV+ G L + +Y+ AQLLG+ V
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFV 101
>pdb|3DWK|A Chain A, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|B Chain B, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|C Chain C, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|D Chain D, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
Length = 625
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 161 ATAVDPKKGNLGTIAP-IAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTW-TNHWV 218
AT +D K G L I+ +V N G+S+ P +++GPA+ + W TNH +
Sbjct: 295 ATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAI 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,901,852
Number of Sequences: 62578
Number of extensions: 323878
Number of successful extensions: 1001
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 33
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)