Query 025464
Match_columns 252
No_of_seqs 176 out of 1441
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 3.5E-54 7.6E-59 363.1 22.1 232 11-251 2-237 (238)
2 PLN00027 aquaporin TIP; Provis 100.0 3.8E-52 8.2E-57 357.4 26.5 252 1-252 1-252 (252)
3 PLN00166 aquaporin TIP2; Provi 100.0 4.8E-50 1E-54 343.3 26.3 243 9-252 7-249 (250)
4 PLN00184 aquaporin NIP1; Provi 100.0 9.8E-50 2.1E-54 347.7 25.5 224 15-245 49-279 (296)
5 KOG0224 Aquaporin (major intri 100.0 1.4E-50 2.9E-55 343.6 13.6 228 14-246 26-282 (316)
6 PLN00167 aquaporin TIP5; Provi 100.0 2E-48 4.3E-53 334.2 26.9 230 12-242 14-243 (256)
7 PLN00026 aquaporin NIP; Provi 100.0 1.3E-48 2.7E-53 340.0 23.5 220 16-243 67-286 (298)
8 PLN00182 putative aquaporin NI 100.0 3.9E-48 8.5E-53 335.7 25.9 217 17-240 39-255 (283)
9 PF00230 MIP: Major intrinsic 100.0 1.3E-48 2.7E-53 332.1 21.0 221 13-234 1-227 (227)
10 PTZ00016 aquaglyceroporin; Pro 100.0 1.1E-47 2.5E-52 335.5 25.3 220 16-241 46-292 (294)
11 COG0580 GlpF Glycerol uptake f 100.0 8.9E-48 1.9E-52 323.2 21.7 219 17-239 2-240 (241)
12 PRK05420 aquaporin Z; Provisio 100.0 1.3E-46 2.8E-51 319.2 25.1 214 20-240 2-229 (231)
13 PLN00183 putative aquaporin NI 100.0 6.4E-45 1.4E-49 314.6 24.4 227 15-249 40-266 (274)
14 cd00333 MIP Major intrinsic pr 100.0 4.9E-43 1.1E-47 297.8 21.5 212 21-237 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 9.4E-42 2E-46 287.7 21.2 209 25-234 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 1.5E-16 3.2E-21 139.1 8.3 105 136-240 65-173 (298)
17 PLN00184 aquaporin NIP1; Provi 99.7 3E-16 6.5E-21 137.4 9.1 103 138-240 50-156 (296)
18 PLN00167 aquaporin TIP5; Provi 99.6 9.3E-15 2E-19 125.9 10.6 103 138-240 18-129 (256)
19 PLN00182 putative aquaporin NI 99.6 8.4E-15 1.8E-19 127.5 9.8 99 17-126 156-254 (283)
20 cd00333 MIP Major intrinsic pr 99.6 9.2E-15 2E-19 124.3 9.7 101 15-123 125-227 (228)
21 PLN00183 putative aquaporin NI 99.6 1.2E-14 2.6E-19 126.2 10.4 112 18-140 159-270 (274)
22 PLN00166 aquaporin TIP2; Provi 99.6 9.7E-15 2.1E-19 125.4 9.1 102 139-240 15-125 (250)
23 PLN00027 aquaporin TIP; Provis 99.5 5.8E-14 1.3E-18 120.9 9.7 101 140-240 18-127 (252)
24 PRK05420 aquaporin Z; Provisio 99.5 4E-14 8.7E-19 120.4 8.0 99 142-240 2-105 (231)
25 PTZ00016 aquaglyceroporin; Pro 99.5 4.9E-14 1.1E-18 123.7 7.7 101 140-240 48-152 (294)
26 TIGR00861 MIP MIP family chann 99.5 1.7E-13 3.6E-18 115.6 8.8 97 16-120 118-215 (216)
27 COG0580 GlpF Glycerol uptake f 99.4 8.9E-13 1.9E-17 111.5 8.3 103 140-242 3-112 (241)
28 KOG0223 Aquaporin (major intri 99.4 3.6E-13 7.9E-18 114.1 5.2 110 7-128 119-228 (238)
29 KOG0224 Aquaporin (major intri 99.3 1.1E-12 2.4E-17 112.6 6.0 102 140-241 30-136 (316)
30 PF00230 MIP: Major intrinsic 99.2 5.2E-12 1.1E-16 107.2 4.3 102 139-240 5-116 (227)
31 PRK11562 nitrite transporter N 90.1 12 0.00026 32.7 13.2 174 59-242 59-253 (268)
32 COG2116 FocA Formate/nitrite f 82.5 32 0.0007 29.9 19.2 178 57-242 63-261 (265)
33 PRK10805 formate transporter; 81.1 38 0.00083 29.8 18.9 99 59-161 69-181 (285)
34 PRK14218 camphor resistance pr 56.5 91 0.002 24.1 8.3 115 99-237 5-126 (133)
35 PF04632 FUSC: Fusaric acid re 51.2 2.4E+02 0.0052 27.4 14.3 42 86-127 372-413 (650)
36 PRK09713 focB putative formate 47.0 2E+02 0.0044 25.3 17.0 101 58-161 67-180 (282)
37 PRK14219 camphor resistance pr 45.6 1.2E+02 0.0027 23.2 7.0 105 111-236 7-118 (132)
38 PF03033 Glyco_transf_28: Glyc 41.5 8.5 0.00018 29.1 -0.1 19 79-97 7-25 (139)
39 PRK14212 camphor resistance pr 40.7 1.6E+02 0.0036 22.4 7.3 106 111-237 8-120 (128)
40 PF01226 Form_Nir_trans: Forma 36.6 2.7E+02 0.0059 23.8 13.5 102 58-161 57-170 (250)
41 PRK14225 camphor resistance pr 35.5 2.1E+02 0.0046 22.2 7.6 109 109-236 15-130 (137)
42 PRK14195 camphor resistance pr 33.5 2.1E+02 0.0046 21.7 7.2 106 110-236 7-119 (125)
43 PRK14227 camphor resistance pr 28.6 2.6E+02 0.0057 21.2 7.2 106 110-236 7-119 (124)
44 PRK12446 undecaprenyldiphospho 27.3 14 0.00031 33.3 -1.0 21 76-96 7-27 (352)
45 COG3301 NrfD Formate-dependent 26.5 4.6E+02 0.0099 23.3 8.9 45 194-240 223-270 (305)
46 PF09512 ThiW: Thiamine-precur 26.5 3.1E+02 0.0067 21.7 6.4 26 100-125 123-148 (150)
47 PRK14206 camphor resistance pr 25.5 3E+02 0.0066 20.9 6.8 106 111-235 7-119 (127)
48 TIGR00790 fnt formate/nitrite 24.9 4.3E+02 0.0093 22.4 16.3 102 58-161 43-157 (239)
49 PRK14231 camphor resistance pr 24.5 3.2E+02 0.007 20.8 7.9 103 111-237 7-116 (129)
50 PRK14199 camphor resistance pr 23.5 3.4E+02 0.0074 20.7 8.5 105 110-235 10-121 (128)
51 PRK14200 camphor resistance pr 23.1 3.5E+02 0.0075 20.7 8.0 106 111-237 11-123 (127)
52 PRK14221 camphor resistance pr 22.8 3.4E+02 0.0074 20.5 7.0 101 109-232 10-117 (124)
53 PRK14217 camphor resistance pr 22.2 3.7E+02 0.0081 20.7 8.0 108 111-236 10-121 (134)
54 PRK09979 putative rho operon l 20.3 37 0.00079 18.8 0.1 17 192-208 5-21 (33)
55 COG0306 PitA Phosphate/sulphat 20.1 6.5E+02 0.014 22.7 9.8 134 81-240 20-160 (326)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-54 Score=363.06 Aligned_cols=232 Identities=48% Similarity=0.834 Sum_probs=209.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHH
Q 025464 11 PGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTF 90 (252)
Q Consensus 11 ~~~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl 90 (252)
.++..+++.+|++++||++|++++|++|++.+.+.. ...+.+.+.+++++|+++++.+++++++||||+|||||+
T Consensus 2 ~~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~ 76 (238)
T KOG0223|consen 2 SGELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTL 76 (238)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHH
Confidence 356778999999999999999999999999976432 234667899999999999999999999999999999999
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC----cccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025464 91 GAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL----ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDP 166 (252)
Q Consensus 91 ~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~ 166 (252)
++++.|++++.++..|+.+|++|+++|+.+++.+.+++ ......+.++.+..|+++.|++.||+|+++++.+++|+
T Consensus 77 a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~ 156 (238)
T KOG0223|consen 77 AFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDP 156 (238)
T ss_pred HHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecC
Confidence 99999999999999999999999999999999999863 23345577889999999999999999999999988888
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 025464 167 KKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQP 246 (252)
Q Consensus 167 ~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~~~~~ 246 (252)
|++ .+.|+.||+.+.+.+++.+++||++|||||+|||++..+.|+++|+||++|++|+++++++|+.++.++ +++.
T Consensus 157 ~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~-~~~~ 232 (238)
T KOG0223|consen 157 RRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD-ESEP 232 (238)
T ss_pred CCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc-cccc
Confidence 775 579999999999999999999999999999999999999999999999999999999999999999985 4444
Q ss_pred CCCCC
Q 025464 247 LPAND 251 (252)
Q Consensus 247 ~~~~~ 251 (252)
+++.+
T Consensus 233 ~~~~~ 237 (238)
T KOG0223|consen 233 TKSAD 237 (238)
T ss_pred cCccC
Confidence 44443
No 2
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=3.8e-52 Score=357.37 Aligned_cols=252 Identities=85% Similarity=1.376 Sum_probs=215.7
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhccc
Q 025464 1 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANIS 80 (252)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~is 80 (252)
||.+++...+.+|...++.+|++++||+||++++++++++.+......++.+..+.+++.+++.+|+++.+.+++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iS 80 (252)
T PLN00027 1 MPIRRIAIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANIS 80 (252)
T ss_pred CCcccccCCchHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccC
Confidence 56666666665666678899999999999999999999987543222221111234677889999999999999999999
Q ss_pred CCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHH
Q 025464 81 GGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVY 160 (252)
Q Consensus 81 Gah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~ 160 (252)
|+|+|||+|++.++.|+++|.+.+.|+++|++|+++|+.+.+...++.....+.+.++.+..++++.|+++|++|+++++
T Consensus 81 Gah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~ 160 (252)
T PLN00027 81 GGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVY 160 (252)
T ss_pred ccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766544556677788999999999999999999999
Q ss_pred HHhcCCCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 161 ATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
.+..|+++...+.+.|+.+|+.+...+++.+++||++|||||||||+++.++|+++|+||++|++|+++++++|+.++.+
T Consensus 161 ~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 161 ATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred HhccccccCCccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 86566665433457899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCC
Q 025464 241 DNAHQPLPANDF 252 (252)
Q Consensus 241 ~~~~~~~~~~~~ 252 (252)
++.+++.+..||
T Consensus 241 ~~~~~~~~~~~~ 252 (252)
T PLN00027 241 STTHEQLPTTDY 252 (252)
T ss_pred CccccccCCCCC
Confidence 677777777776
No 3
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=4.8e-50 Score=343.28 Aligned_cols=243 Identities=58% Similarity=1.012 Sum_probs=199.6
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHH
Q 025464 9 GTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAV 88 (252)
Q Consensus 9 ~~~~~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPav 88 (252)
.+.+|..+++.+|++++||+|||+++|+++++........+.....+.+++.+++.+|+++++.+++++++||+|+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAv 86 (250)
T PLN00166 7 GSLGDSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAV 86 (250)
T ss_pred CchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHH
Confidence 33445567888999999999999999999998764212211111123356788999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025464 89 TFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK 168 (252)
Q Consensus 89 Tl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~ 168 (252)
|++.++.|+++|.+.+.|+++|++|+++|+.+.+.++++.........++.+..++++.|+++|++|+++++.+..|+++
T Consensus 87 t~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~ 166 (250)
T PLN00166 87 TLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKK 166 (250)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999998876533222234456788999999999999999999985555444
Q ss_pred CCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCCCCCCCC
Q 025464 169 GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLP 248 (252)
Q Consensus 169 ~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~~~~~~~ 248 (252)
...+.+.|+.+|+.+++.++..+++||++|||||||||++++++|+++|+||++|++|+++++++|+.++.+.+.+.| .
T Consensus 167 ~~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~~~~-~ 245 (250)
T PLN00166 167 GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAAAP-T 245 (250)
T ss_pred cccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCCCCC-C
Confidence 333357899999999999999999999999999999999999899999999999999999999999988765333333 3
Q ss_pred CCCC
Q 025464 249 ANDF 252 (252)
Q Consensus 249 ~~~~ 252 (252)
.|||
T Consensus 246 ~~~~ 249 (250)
T PLN00166 246 SEDY 249 (250)
T ss_pred Cccc
Confidence 4444
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=9.8e-50 Score=347.67 Aligned_cols=224 Identities=29% Similarity=0.420 Sum_probs=189.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHH
Q 025464 15 SHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFV 94 (252)
Q Consensus 15 ~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~ 94 (252)
.+.+.+|++++||+|||+|+|++|++..... .+. ...+++.++++||+++++.+++++++||||+|||||+++++
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~--~~~---~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al 123 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNM--QND---NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFAS 123 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCC---CccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHH
Confidence 4557889999999999999999998875321 111 12357788999999999999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCc------c-cccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 025464 95 GGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLE------T-SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPK 167 (252)
Q Consensus 95 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~------~-~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~ 167 (252)
.|+++|++.+.|+++|++||++|+++++.+++... . ..+.+.+..+..++++.|+++|++|+++++.+..|++
T Consensus 124 ~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~ 203 (296)
T PLN00184 124 CGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNR 203 (296)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCc
Confidence 99999999999999999999999999998875211 0 1122334458899999999999999999998544433
Q ss_pred CCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCCCCC
Q 025464 168 KGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQ 245 (252)
Q Consensus 168 ~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~~~~ 245 (252)
. .+...|+.||+++.+.+++.+++||++|||||||||+++.+.|+++|+||++|++|+++++++|+.+..+++++.
T Consensus 204 ~--~~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~ 279 (296)
T PLN00184 204 A--IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLR 279 (296)
T ss_pred C--CCcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcch
Confidence 2 234689999999999999999999999999999999999989999999999999999999999999987655443
No 5
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-50 Score=343.61 Aligned_cols=228 Identities=28% Similarity=0.433 Sum_probs=197.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHH
Q 025464 14 ASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAF 93 (252)
Q Consensus 14 ~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~ 93 (252)
..++++.|++++||+||++|+++|++++... .+++. ...+++.+.++||+++++++++.+++||||+|||||++++
T Consensus 26 ~i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~-vls~g---~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~ 101 (316)
T KOG0224|consen 26 HIRNELLREFLAEFLGTFVLVVFGLGSVAQA-VLSGG---TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMC 101 (316)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhccceeEEE-EeccC---CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHH
Confidence 3478899999999999999999999998653 23321 2346778899999999999999999999999999999999
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCC----------------Ccccccc--cCCCCchHHHHHHHHHHHHHH
Q 025464 94 VGGHITLLRSILYWIAQLLGSVVACLLLKFSTGG----------------LETSAFA--LSSGVSSWNAVVFEIVMTFGL 155 (252)
Q Consensus 94 ~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~----------------~~~~~~~--~~~~~s~~~~~~~E~~~t~~l 155 (252)
+.||++|+|.++|+++|++||++|++.+|..+.+ .+...|+ |.++++++++|+.|+++|.+|
T Consensus 102 ~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L 181 (316)
T KOG0224|consen 102 ILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAML 181 (316)
T ss_pred HhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987621 1122343 567899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc----C-------CCcceecchhhH
Q 025464 156 VYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW----T-------WTNHWVYWLGPF 224 (252)
Q Consensus 156 ~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~----~-------~~~~~vy~~~p~ 224 (252)
+.+++. .+|+||..+..+.|+.+|+.+.++-.+.+..+|..+||||||+||++.. . -.+.|+.|++|+
T Consensus 182 ~~~l~a-I~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl 260 (316)
T KOG0224|consen 182 VLCLFA-ITDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPL 260 (316)
T ss_pred HhheeE-EecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhh
Confidence 999998 6999997777899999999999999999999999999999999999942 1 146789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC
Q 025464 225 IGAAIAAIVYDHIFIDDNAHQP 246 (252)
Q Consensus 225 ~Ga~la~~l~~~~~~~~~~~~~ 246 (252)
+|+++++++|++++..+.++++
T Consensus 261 ~Gai~G~~iY~~~Ig~h~~~~~ 282 (316)
T KOG0224|consen 261 IGAILGGWIYDFFIGFHIPREP 282 (316)
T ss_pred hhhhhhhhhheeeeeccCCCCC
Confidence 9999999999999887666444
No 6
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=2e-48 Score=334.17 Aligned_cols=230 Identities=50% Similarity=0.880 Sum_probs=195.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHH
Q 025464 12 GEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFG 91 (252)
Q Consensus 12 ~~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~ 91 (252)
++..+++.+|++++||+|||+++|+++++........++....+.+++.+++.+|+++.+.+++++++||+|+|||+|++
T Consensus 14 ~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~ 93 (256)
T PLN00167 14 QQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFG 93 (256)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHH
Confidence 45567889999999999999999999998764322212222223467889999999999999999999999999999999
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 025464 92 AFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNL 171 (252)
Q Consensus 92 ~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~ 171 (252)
.++.|+++|++++.|+++|++|+++|+++++.++++...+.....++.+..++++.|+++|++|+++++. ..|+++...
T Consensus 94 ~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~-~~~~~~~~~ 172 (256)
T PLN00167 94 MAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYA-AGDPRRGLL 172 (256)
T ss_pred HHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHH-hccccccCC
Confidence 9999999999999999999999999999999887643223333344567788999999999999999997 466655434
Q ss_pred CcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCC
Q 025464 172 GTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDN 242 (252)
Q Consensus 172 ~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~ 242 (252)
....|+.+|+++.+..++.+++||++|||||||||+++.+.|+++|+||++|++|+++++++|+.++.|+.
T Consensus 173 ~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~ 243 (256)
T PLN00167 173 GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQ 243 (256)
T ss_pred CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999999999888999999999999999999999999987643
No 7
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=1.3e-48 Score=339.99 Aligned_cols=220 Identities=29% Similarity=0.435 Sum_probs=187.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHh
Q 025464 16 HPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVG 95 (252)
Q Consensus 16 ~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~ 95 (252)
..+.+|++++||+|||+|+|+++++.+.... .+ ...+++.+++++|+++++.+++++++||||+|||||+++++.
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~-~~----~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~ 141 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQK-YD----GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAAL 141 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC----CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHh
Confidence 5578899999999999999999976543211 11 113567788999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcch
Q 025464 96 GHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIA 175 (252)
Q Consensus 96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~ 175 (252)
|+++|++.+.||++|++|+++|+++++.++++..... .+.++.+..++++.|+++|++|+++++.+..|+++ .+...
T Consensus 142 g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~g-~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~--~~~~~ 218 (298)
T PLN00026 142 RHFPWKHVPAYIAAQVSASICASFALKGVFHPFMSGG-VTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRA--VGELA 218 (298)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-eeeecccHHHHHHHHHHHHHHHHHhheeeecCCCC--cCCcc
Confidence 9999999999999999999999999999886422211 13346788999999999999999999875445433 22357
Q ss_pred hHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCCC
Q 025464 176 PIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNA 243 (252)
Q Consensus 176 ~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~~ 243 (252)
++.+|+++++.+++.+++||++|||||||+|+++.++|+++|+||++|++|+++++++|+.+..++++
T Consensus 219 ~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~ 286 (298)
T PLN00026 219 GIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREED 286 (298)
T ss_pred chHHHHHHHHHHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 89999999999999999999999999999999999899999999999999999999999999766443
No 8
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=3.9e-48 Score=335.66 Aligned_cols=217 Identities=30% Similarity=0.466 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhc
Q 025464 17 PDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGG 96 (252)
Q Consensus 17 ~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g 96 (252)
.+.+|++++||+|||+|+|+++++..... ..+ ...+.+.++++||+++++.+++++++||||+|||||+++++.|
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~-~~~----~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~ 113 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNV-LYG----GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFR 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccC----CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHc
Confidence 46779999999999999999998875321 111 1235677889999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchh
Q 025464 97 HITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAP 176 (252)
Q Consensus 97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~ 176 (252)
+++|.+.+.|+++|++|+++|+++++.+++......+.+.+..+..++++.|+++|++|+++++....+++. .+...+
T Consensus 114 ~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~--~~~~~~ 191 (283)
T PLN00182 114 RFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA--VGELAG 191 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc--CCcchh
Confidence 999999999999999999999999999886433344455566788999999999999999999875444332 234578
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 177 IAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 177 ~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
+.+|+++.+.+++.+++||+++||||+|+++++.+.|+++|+||++|++|+++++++|+.+..+
T Consensus 192 l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 192 IAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred HHHHHHHHHHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998899999999999999999999999999854
No 9
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.3e-48 Score=332.09 Aligned_cols=221 Identities=39% Similarity=0.629 Sum_probs=189.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCC-CchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHH
Q 025464 13 EASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGAST-PAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFG 91 (252)
Q Consensus 13 ~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~ 91 (252)
|.++++++|++++||+||++++|+++++.+......++...+ ..++..+++.+|+++++.++.++++||+|+||+||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 457899999999999999999999999776443333221112 2467889999999999999999999999999999999
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC--cccc--cccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 025464 92 AFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL--ETSA--FALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPK 167 (252)
Q Consensus 92 ~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~--~~~~--~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~ 167 (252)
.++.|+++|++.+.|+++|++|+++|+.+++.++++. .... ..+.++.+..++++.|+++|++|+++++.+ .|++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~-~~~~ 159 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAV-ADDK 159 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHH-TSTT
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhh-cccc
Confidence 9999999999999999999999999999999998762 2222 346678899999999999999999999985 5544
Q ss_pred CCCC-CcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHH
Q 025464 168 KGNL-GTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVY 234 (252)
Q Consensus 168 ~~~~-~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~ 234 (252)
++.. +.+.|+.||+++.+..+..++.||++|||||+|+++++...|+++|+||++|++|+++|+++|
T Consensus 160 ~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 160 RKFPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp SSSTSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeEEEEEeecccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 4333 457899999999999999999999999999999999999999999999999999999999987
No 10
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.1e-47 Score=335.53 Aligned_cols=220 Identities=27% Similarity=0.427 Sum_probs=187.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHh
Q 025464 16 HPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVG 95 (252)
Q Consensus 16 ~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~ 95 (252)
.++.+|++++||+||++++|+++++..... ..+ .+.+.+.+++++|+++.+.+++++++||+|+|||||+++++.
T Consensus 46 ~~~~~~~~laEfigT~llvf~g~g~~~~~~-~~~----~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~ 120 (294)
T PTZ00016 46 YRPNVREYVAEFLGTFVLLFFGEGVVATTH-TVG----NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVF 120 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccC----CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHh
Confidence 377889999999999999999998875321 111 123567889999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC-----------------cccccccCCCCchHHHHHHHHHHHHHHHHH
Q 025464 96 GHITLLRSILYWIAQLLGSVVACLLLKFSTGGL-----------------ETSAFALSSGVSSWNAVVFEIVMTFGLVYT 158 (252)
Q Consensus 96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~ 158 (252)
|+++|++.+.|+++|++|+++|+++++.++++. ....+.+.++.+..++++.|+++|++|+++
T Consensus 121 g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ 200 (294)
T PTZ00016 121 GKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLV 200 (294)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887531 011244556678899999999999999999
Q ss_pred HHHHhcCCCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc------CCC----cceecchhhHHHHH
Q 025464 159 VYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW------TWT----NHWVYWLGPFIGAA 228 (252)
Q Consensus 159 v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~------~~~----~~~vy~~~p~~Ga~ 228 (252)
++. ..|+++.......|+.||+++.++.++.+++||++||||||||||++.. .|+ ++|+||++|++|++
T Consensus 201 ila-~~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~ 279 (294)
T PTZ00016 201 ILA-ITDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAV 279 (294)
T ss_pred HHH-hccCccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHH
Confidence 998 5776664434468999999999999999999999999999999999862 354 68999999999999
Q ss_pred HHHHHHHHHhcCC
Q 025464 229 IAAIVYDHIFIDD 241 (252)
Q Consensus 229 la~~l~~~~~~~~ 241 (252)
+++++|++++.++
T Consensus 280 ~aally~~ll~~~ 292 (294)
T PTZ00016 280 LGMFLYDKFIPPL 292 (294)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998774
No 11
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-48 Score=323.23 Aligned_cols=219 Identities=32% Similarity=0.470 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhc
Q 025464 17 PDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGG 96 (252)
Q Consensus 17 ~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g 96 (252)
.+..|++++||+||++|++++++++....... .+.+..++..++++||+++++.+|+++++||+|+|||||+++++.|
T Consensus 2 ~~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~--~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g 79 (241)
T COG0580 2 TTLTKKLLAEFLGTFLLIFFGNGSVAAVALKG--SKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRG 79 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccHHHHHHhcc--ccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhC
Confidence 35678889999999999999999997654322 1234567888999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC----------cccccccCCC-CchHHHHHHHHHHHHHHHHHHHHHhcC
Q 025464 97 HITLLRSILYWIAQLLGSVVACLLLKFSTGGL----------ETSAFALSSG-VSSWNAVVFEIVMTFGLVYTVYATAVD 165 (252)
Q Consensus 97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----------~~~~~~~~~~-~s~~~~~~~E~~~t~~l~~~v~~~~~~ 165 (252)
+++|++++.||++|++||++|+.+++.++.+. ....+++.|. .+..++++.|+++|++|++.++....|
T Consensus 80 ~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~ 159 (241)
T COG0580 80 RFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDD 159 (241)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999887531 1233455554 367889999999999999999995444
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcC---------CCcceecchhhHHHHHHHHHHHHH
Q 025464 166 PKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWT---------WTNHWVYWLGPFIGAAIAAIVYDH 236 (252)
Q Consensus 166 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~---------~~~~~vy~~~p~~Ga~la~~l~~~ 236 (252)
++. ...+.|+.||+.++.++++.++.||.++|||||+|||+...- +.|.|+||++|++|+++++++|+.
T Consensus 160 ~~~--~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~ 237 (241)
T COG0580 160 GNA--NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKL 237 (241)
T ss_pred Ccc--cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHH
Confidence 333 324799999999999999999999999999999999997532 248999999999999999999998
Q ss_pred Hhc
Q 025464 237 IFI 239 (252)
Q Consensus 237 ~~~ 239 (252)
++.
T Consensus 238 ~~~ 240 (241)
T COG0580 238 LLG 240 (241)
T ss_pred Hcc
Confidence 765
No 12
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=1.3e-46 Score=319.24 Aligned_cols=214 Identities=31% Similarity=0.539 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccc
Q 025464 20 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHIT 99 (252)
Q Consensus 20 ~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~ 99 (252)
+|++++||+||++++|+++++........ .++.+++.+++.+|+++.+.+++++++||+|+|||||+++++.|+++
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~----~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~ 77 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP----ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFP 77 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC----CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCC
Confidence 68999999999999999998864321111 11235677899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---c--cc------ccC-CCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 025464 100 LLRSILYWIAQLLGSVVACLLLKFSTGGLET---S--AF------ALS-SGVSSWNAVVFEIVMTFGLVYTVYATAVDPK 167 (252)
Q Consensus 100 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~--~~------~~~-~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~ 167 (252)
|++.+.|+++|++|+++|+.+++.++++... . .+ ... ...+..++++.|+++|++|+++++. ..|++
T Consensus 78 ~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~-~~~~~ 156 (231)
T PRK05420 78 AKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILG-ATDKR 156 (231)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 9999999999999999999999988754211 0 01 111 2347789999999999999999998 46655
Q ss_pred CCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCC--CcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 168 KGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTW--TNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 168 ~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~--~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
+. ....|+.+|+.+.+..++.+++||++|||||||||++++++| +++|+||++|++|+++++++|++++.+
T Consensus 157 ~~--~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 157 AP--AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred CC--CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhcc
Confidence 42 246899999999999999999999999999999999998766 589999999999999999999999776
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=6.4e-45 Score=314.55 Aligned_cols=227 Identities=28% Similarity=0.442 Sum_probs=191.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHH
Q 025464 15 SHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFV 94 (252)
Q Consensus 15 ~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~ 94 (252)
.+.+.+|++++||+|||+++|+++++..... ..+ ...+++.+++.+|+++.+.+++++++||+|+|||+|+++++
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~-~~~----~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l 114 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQ-LSG----GEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFAT 114 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccC----CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHH
Confidence 3577889999999999999999998764321 111 12356678899999999999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 025464 95 GGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTI 174 (252)
Q Consensus 95 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~ 174 (252)
.|+++|.+.+.||++|++|+++|+.+++.+++... ..+.+.+..+..++++.|+++|++|++.++.+ .++++ ..+..
T Consensus 115 ~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~-~~~~~ 191 (274)
T PLN00183 115 FGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-DLMTTKPAQGCSSAFWVEFIATFIVMFLAASL-TSQPQ-SLGHL 191 (274)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccCCCcccHHHHHHHHHHHHHHHHHhhhee-ecccc-CCCCc
Confidence 99999999999999999999999999988886432 23334455567899999999999999999874 44332 22235
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 025464 175 APIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPA 249 (252)
Q Consensus 175 ~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~~~~~~~~ 249 (252)
.++.+|+.+++.+++.+++||+++||||+|++++.+..|+++|+||++|++|+++++++|+.++.+....++..+
T Consensus 192 ~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~~~~~ 266 (274)
T PLN00183 192 SGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCSPNSS 266 (274)
T ss_pred eehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 789999999999999999999999999999999999899999999999999999999999999887655544433
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=4.9e-43 Score=297.82 Aligned_cols=212 Identities=48% Similarity=0.749 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccch
Q 025464 21 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITL 100 (252)
Q Consensus 21 ~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~ 100 (252)
|++++||+|||++++.++++..... ..+ ..+.+++.+++.||+++.+.+++++++||+|+|||+|++.++.|+++|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~-~~~---~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~ 76 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVK-LAG---GASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPL 76 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhcc-ccC---CCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCH
Confidence 6789999999999999998875422 111 122356778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCc----cc------cc--ccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025464 101 LRSILYWIAQLLGSVVACLLLKFSTGGLE----TS------AF--ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK 168 (252)
Q Consensus 101 ~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~----~~------~~--~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~ 168 (252)
++.+.|+++|++|+++|+.+.+.++++.. .. .+ .+.++.+..++++.|+++|++|++.++.+ .++++
T Consensus 77 ~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~-~~~~~ 155 (228)
T cd00333 77 IRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFAT-TDDPN 155 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHH-ccccc
Confidence 99999999999999999999988875311 11 11 23456788999999999999999999985 55444
Q ss_pred C-CCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcC---CCcceecchhhHHHHHHHHHHHHHH
Q 025464 169 G-NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWT---WTNHWVYWLGPFIGAAIAAIVYDHI 237 (252)
Q Consensus 169 ~-~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~---~~~~~vy~~~p~~Ga~la~~l~~~~ 237 (252)
. ......++.+|+.+.+.+++.+++||+++|||||+++++.++. |+++|+||++|++|+++++++|+++
T Consensus 156 ~~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 156 GPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 2 2334688999999999999999999999999999999999875 9999999999999999999999864
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=9.4e-42 Score=287.72 Aligned_cols=209 Identities=39% Similarity=0.625 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccchhHHH
Q 025464 25 AEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSI 104 (252)
Q Consensus 25 ~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~~~~~ 104 (252)
+||+||++++++++++..............+.++..+++.+|+.+...+++++++||+|+|||+|++.++.|+++|++.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999999987643221100111122567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcc---cc-cccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCcchhHHH
Q 025464 105 LYWIAQLLGSVVACLLLKFSTGGLET---SA-FALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGN-LGTIAPIAI 179 (252)
Q Consensus 105 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~-~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~-~~~~~~~~i 179 (252)
.|+++|++|+++|+.+.+.++++... .. ..+.++.+..++++.|+++|++|+++++. ..++++.. .+...++.+
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~-~~~~~~~~~~~~~~~~~i 159 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFA-TTDPRNRVPRGGFAPLAI 159 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHhe-eecCCCCCCCCccHHHHH
Confidence 99999999999999999988865311 11 11234568899999999999999999998 45544432 223689999
Q ss_pred HHHHHHHHHHcCCCCCccccccchHHHHHhhc--CCCcceecchhhHHHHHHHHHHH
Q 025464 180 GFIVGANILAGGAFDGASMNPAVSFGPAVVSW--TWTNHWVYWLGPFIGAAIAAIVY 234 (252)
Q Consensus 180 g~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~--~~~~~~vy~~~p~~Ga~la~~l~ 234 (252)
|+.+.+.+++.+++||+++||||||++++.++ +|+++|+||++|++|+++++++|
T Consensus 160 G~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 160 GLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987 89999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.67 E-value=1.5e-16 Score=139.14 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=87.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC-CCc-chhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc-
Q 025464 136 SSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK-GN-LGT-IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW- 211 (252)
Q Consensus 136 ~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~-~~-~~~-~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~- 211 (252)
.++.+.++.++.|+++|++|+++++.....+++ .. .+. ..++.+|+.+++.+++.+++||+|+||||++++++.+.
T Consensus 65 ~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~ 144 (298)
T PLN00026 65 PPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHF 144 (298)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCC
Confidence 345678899999999999999999864332221 11 111 23578999999999999999999999999999999876
Q ss_pred CCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 212 TWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 212 ~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
.|.+.|+||++|++|+++|+++++.++.+
T Consensus 145 ~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 145 PWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999876
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.66 E-value=3e-16 Score=137.39 Aligned_cols=103 Identities=26% Similarity=0.309 Sum_probs=84.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcc--hhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc-CC
Q 025464 138 GVSSWNAVVFEIVMTFGLVYTVYATAVDPK-KGNLGTI--APIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TW 213 (252)
Q Consensus 138 ~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~-~~~~~~~--~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~-~~ 213 (252)
+.+..+.++.|+++|++|+++++..+.... +...... .++.+|+.+++.+++.+++||+|+|||+++++++.+. .|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 345778999999999999999987532211 1111123 3455599999999999999999999999999999876 79
Q ss_pred CcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 214 TNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 214 ~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
.+.|+||++|++|+++|+++++.++..
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999864
No 18
>PLN00167 aquaporin TIP5; Provisional
Probab=99.58 E-value=9.3e-15 Score=125.86 Aligned_cols=103 Identities=21% Similarity=0.398 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC----CC---C-CcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHh
Q 025464 138 GVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GN---L-GTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV 209 (252)
Q Consensus 138 ~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~----~~---~-~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~ 209 (252)
.-+.++.++.|+++|++|++..+.+..+.+. .. . ....++.+|+.+++.+++.+++||+|+|||+++++.+.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 3356789999999999999999886443221 11 1 12468899999999999999999999999999999998
Q ss_pred hc-CCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 210 SW-TWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 210 ~~-~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
+. .|.+.|+||++|++|+++++.+++.++..
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65 68999999999999999999999888654
No 19
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.58 E-value=8.4e-15 Score=127.52 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhc
Q 025464 17 PDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGG 96 (252)
Q Consensus 17 ~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g 96 (252)
.+..+.+++||++|+++++.+++..... .. ... ..++.+|+.+++.++..+++||+|+|||+|++.++.+
T Consensus 156 ~s~~~a~~~E~l~TfiLv~~i~~~~~~~-----~~---~~~--~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~ 225 (283)
T PLN00182 156 DSSGQALVAEIIISFLLMFVISGVATDS-----RA---VGE--LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVM 225 (283)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhheecc-----cc---CCc--chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHh
Confidence 4678999999999999999987654211 00 111 1468899999999999999999999999999999986
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025464 97 HITLLRSILYWIAQLLGSVVACLLLKFSTG 126 (252)
Q Consensus 97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 126 (252)
+ .|.+.|+||++|++|+++|+++.+.+..
T Consensus 226 ~-~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 226 G-RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred c-cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 6899999999999999999999988863
No 20
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.57 E-value=9.2e-15 Score=124.31 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=84.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHH
Q 025464 15 SHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFV 94 (252)
Q Consensus 15 ~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~ 94 (252)
.+.+..|.++.|+++|+++++.++......+ . +......++.+|+.+...++..+++||+|+|||++++..+
T Consensus 125 ~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~----~----~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i 196 (228)
T cd00333 125 PGVSNGNAFFVEFIGTFILVLVVFATTDDPN----G----PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPAL 196 (228)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHccccc----c----CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHH
Confidence 3457889999999999999999886653110 0 0112245788899999999999999999999999999999
Q ss_pred hccc--chhHHHHHHHHHHHHHHHHHHHHHH
Q 025464 95 GGHI--TLLRSILYWIAQLLGSVVACLLLKF 123 (252)
Q Consensus 95 ~g~~--~~~~~~~yi~aQ~~Ga~~g~~~~~~ 123 (252)
.++. +|++.++||++|++|+++|+++.+.
T Consensus 197 ~~~~~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 197 FTGLARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred HhccccccceeehhhhHHHHHHHHHHHHHHh
Confidence 9987 7999999999999999999988654
No 21
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.57 E-value=1.2e-14 Score=126.16 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcc
Q 025464 18 DALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGH 97 (252)
Q Consensus 18 ~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~ 97 (252)
+..+.++.||++|+++++.+++..... +. . +. ..++.+|+.+.+.+++.+++||+|+|||+|++.++.+
T Consensus 159 ~~~~~~~~E~v~T~iLv~~i~~~~~~~----~~----~-~~-~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~- 227 (274)
T PLN00183 159 GCSSAFWVEFIATFIVMFLAASLTSQP----QS----L-GH-LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS- 227 (274)
T ss_pred cHHHHHHHHHHHHHHHHHhhheeeccc----cC----C-CC-ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-
Confidence 467899999999999999987655321 00 0 11 1357889999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCc
Q 025464 98 ITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVS 140 (252)
Q Consensus 98 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s 140 (252)
.+|.+.|+||++|++|+++|+.+.+.+..+........+++.|
T Consensus 228 ~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~~~~~~~~~ 270 (274)
T PLN00183 228 WDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCSPNSSPNTS 270 (274)
T ss_pred CChhheehHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCchh
Confidence 5899999999999999999999999998655444444455544
No 22
>PLN00166 aquaporin TIP2; Provisional
Probab=99.57 E-value=9.7e-15 Score=125.40 Aligned_cols=102 Identities=22% Similarity=0.362 Sum_probs=84.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCC-C-C--CC--CCc--chhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhh
Q 025464 139 VSSWNAVVFEIVMTFGLVYTVYATAVDP-K-K--GN--LGT--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS 210 (252)
Q Consensus 139 ~s~~~~~~~E~~~t~~l~~~v~~~~~~~-~-~--~~--~~~--~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~ 210 (252)
.+..+.++.|+++|++|+++.+.+..+. + . +. ... ..++.+|+.+++.+++.+++||+|+||||++++++.+
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 4667899999999999999998864331 1 1 11 111 2567799999999999999999999999999999975
Q ss_pred c-CCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 211 W-TWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 211 ~-~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
. .|.+.|+||++|++|+++++.+++.++..
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4 58889999999999999999999988754
No 23
>PLN00027 aquaporin TIP; Provisional
Probab=99.52 E-value=5.8e-14 Score=120.90 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCc--chhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc
Q 025464 140 SSWNAVVFEIVMTFGLVYTVYATAVD------PKKGNLGT--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW 211 (252)
Q Consensus 140 s~~~~~~~E~~~t~~l~~~v~~~~~~------~~~~~~~~--~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~ 211 (252)
...+.++.|+++|++|++..+..... +++..... ..++.+|+.+++.+++.+++||+|+||||++++.+.+.
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~ 97 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGN 97 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCC
Confidence 45688999999999999998875321 11111111 46889999999999999999999999999999998765
Q ss_pred -CCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 212 -TWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 212 -~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
.|...|+||++|++|+++++.+++.+...
T Consensus 98 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 98 ITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 58889999999999999999999887643
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.51 E-value=4e-14 Score=120.39 Aligned_cols=99 Identities=26% Similarity=0.249 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CC--CCCc-chhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc-CCCcc
Q 025464 142 WNAVVFEIVMTFGLVYTVYATAVDPK-KG--NLGT-IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWTNH 216 (252)
Q Consensus 142 ~~~~~~E~~~t~~l~~~v~~~~~~~~-~~--~~~~-~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~-~~~~~ 216 (252)
.|.++.|+++|++|++..+......+ .. ..+. ..++.+|+.+.+.+++.+++||+|+|||+++++.+.+. .|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 47899999999999998877432211 11 1111 23788999999999999999999999999999999865 69999
Q ss_pred eecchhhHHHHHHHHHHHHHHhcC
Q 025464 217 WVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 217 ~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
|.||++|++|+++|+.+.+.+++.
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999887777654
No 25
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.49 E-value=4.9e-14 Score=123.70 Aligned_cols=101 Identities=24% Similarity=0.360 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CCC-cchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc-CCCc
Q 025464 140 SSWNAVVFEIVMTFGLVYTVYATAVDPKK-G-NLG-TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWTN 215 (252)
Q Consensus 140 s~~~~~~~E~~~t~~l~~~v~~~~~~~~~-~-~~~-~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~-~~~~ 215 (252)
+..+.++.|+++|+++++..+....+... . ..+ ...++.+|+.+.+.+++.+++||+|+|||+++++++.+. .|.+
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~ 127 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKK 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHH
Confidence 45688999999999999988875432211 1 111 235667899999999999999999999999999999887 7999
Q ss_pred ceecchhhHHHHHHHHHHHHHHhcC
Q 025464 216 HWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 216 ~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
.|.||++|++|+++|+.+.+.++++
T Consensus 128 ~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 128 LPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999998888765
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.47 E-value=1.7e-13 Score=115.65 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHh
Q 025464 16 HPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVG 95 (252)
Q Consensus 16 ~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~ 95 (252)
+.+.++.++.|+++|+++++..+...... ++. . +....++.+|+.+...++..+++||+|+|||++++..+.
T Consensus 118 ~~~~~~~~~~E~i~T~~lv~~~~~~~~~~------~~~-~-~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~ 189 (216)
T TIGR00861 118 GVSSGQAFFVEFIGTAILVLVIFATTDPR------NRV-P-RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALF 189 (216)
T ss_pred cccHHHHHHHHHHHHHHHHHHHheeecCC------CCC-C-CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHH
Confidence 35789999999999999999987655321 100 0 111457889999999999999999999999999999997
Q ss_pred c-ccchhHHHHHHHHHHHHHHHHHHH
Q 025464 96 G-HITLLRSILYWIAQLLGSVVACLL 120 (252)
Q Consensus 96 g-~~~~~~~~~yi~aQ~~Ga~~g~~~ 120 (252)
+ +.+|.+.++||++|++|+++++.+
T Consensus 190 ~~~~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 190 AGLAGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred hccccccceeHHHHHHHHHHHHHHHh
Confidence 5 578999999999999999999865
No 27
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.9e-13 Score=111.53 Aligned_cols=103 Identities=23% Similarity=0.268 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC---CC--CCCCC-cchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc-C
Q 025464 140 SSWNAVVFEIVMTFGLVYTVYATAVD---PK--KGNLG-TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-T 212 (252)
Q Consensus 140 s~~~~~~~E~~~t~~l~~~v~~~~~~---~~--~~~~~-~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~-~ 212 (252)
+..+.++.|+++|++|++.....+.. ++ +...+ ....+..|+.|.+.+++.+++||+|+|||.+++.++.+. .
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 44567899999999999976554221 11 11112 236778899999999999999999999999999999886 7
Q ss_pred CCcceecchhhHHHHHHHHHHHHHHhcCCC
Q 025464 213 WTNHWVYWLGPFIGAAIAAIVYDHIFIDDN 242 (252)
Q Consensus 213 ~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~ 242 (252)
|++...||++|++|+++|+.+...+++++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~ 112 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKI 112 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999988888887743
No 28
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.6e-13 Score=114.10 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=91.2
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCch
Q 025464 7 AIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNP 86 (252)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NP 86 (252)
..+........+..|.++.|++.||.+++..++.... .+. . ...++.+|+.+.+.+.+.+++||+++||
T Consensus 119 ~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d----~~~-----~--~~a~l~IG~~v~~~~l~~g~~TG~sMNP 187 (238)
T KOG0223|consen 119 GLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATD----PRR-----S--ELAPLAIGFSVGLNILAAGPFTGASMNP 187 (238)
T ss_pred CcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeec----CCC-----c--ccHHHHHHHHHHHHHHeecCcCcCccCc
Confidence 3344456667888999999999999999997653321 111 1 3456889999999999999999999999
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025464 87 AVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL 128 (252)
Q Consensus 87 avTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~ 128 (252)
|+|++.++..+ +|..+|+||++|++|+++++++.+.++.++
T Consensus 188 ArSfGpAvv~~-~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 188 ARSFGPAVVYG-SWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred HHHhhHHHHhc-CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999887 599999999999999999999999888644
No 29
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.1e-12 Score=112.57 Aligned_cols=102 Identities=26% Similarity=0.404 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCC--cchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhc-CCC
Q 025464 140 SSWNAVVFEIVMTFGLVYTVYATAVDP--KKGNLG--TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWT 214 (252)
Q Consensus 140 s~~~~~~~E~~~t~~l~~~v~~~~~~~--~~~~~~--~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~-~~~ 214 (252)
...|.+++|+++|++|++.-+..+... .+...+ ....+..|++++..+++.+.+||+|+|||++++..+.+. .|.
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 457889999999999999777642211 111112 234578899999999999999999999999999999987 799
Q ss_pred cceecchhhHHHHHHHHHHHHHHhcCC
Q 025464 215 NHWVYWLGPFIGAAIAAIVYDHIFIDD 241 (252)
Q Consensus 215 ~~~vy~~~p~~Ga~la~~l~~~~~~~~ 241 (252)
++.+|.++|++|+++|+.....+|.+.
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~d~ 136 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYYDA 136 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877776653
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.24 E-value=5.2e-12 Score=107.24 Aligned_cols=102 Identities=28% Similarity=0.487 Sum_probs=80.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC----C-C--cchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHh
Q 025464 139 VSSWNAVVFEIVMTFGLVYTVYATAV--DPKKGN----L-G--TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV 209 (252)
Q Consensus 139 ~s~~~~~~~E~~~t~~l~~~v~~~~~--~~~~~~----~-~--~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~ 209 (252)
.+.+|.++.|+++|+++++....... ++...+ . . ....+..|+.+.+.+++.+++||+|+|||.+++..+.
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~ 84 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee
Confidence 35689999999999999988776322 111111 0 1 1234456888889999999999999999999999998
Q ss_pred hc-CCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 210 SW-TWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 210 ~~-~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
+. .|.+...|+++|++|+++|+.+.+.++++
T Consensus 85 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 85 GRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred eeecccceeeEEeeccccccccccchhhcccC
Confidence 76 68889999999999999999999888876
No 31
>PRK11562 nitrite transporter NirC; Provisional
Probab=90.13 E-value=12 Score=32.68 Aligned_cols=174 Identities=12% Similarity=0.117 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhC---CCccc---c
Q 025464 59 ISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG---GLETS---A 132 (252)
Q Consensus 59 ~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~---~~~~~---~ 132 (252)
+..+..+++++.+.+...+..-=+ |=....-..+.||.+|++.+--|.-=.+|=++|+++.-++.. +...+ .
T Consensus 59 li~g~~F~~GLilVi~~G~eLFTg--n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~ 136 (268)
T PRK11562 59 LVMGATFGIALTLVIIAGSELFTG--HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTS 136 (268)
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 344566777777776654442211 333333455678889988887777777777777666544321 10000 0
Q ss_pred c-----ccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHH
Q 025464 133 F-----ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPA 207 (252)
Q Consensus 133 ~-----~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~ 207 (252)
. ...-+.+..+.|+-=++|..+...++... ...+ ..+....+. +.+++.+. ..+.=...|-- -+...
T Consensus 137 ~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~-~~~~--~~gKi~~i~--~pI~~Fv~--~GFEH~IANm~-~~~l~ 208 (268)
T PRK11562 137 IVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMA-IRTE--GAAKFIAIW--WCLLAFIA--SGYEHSVANMT-LFALS 208 (268)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-Hhcc--ccchhHHHH--HHHHHHHH--cCCcchhHhHH-HHHHH
Confidence 0 00113456677777777888877777663 2222 122222222 22333222 22222333422 22222
Q ss_pred Hhhc-----CC----CcceecchhhHHHH-HHHHHHHHHHhcCCC
Q 025464 208 VVSW-----TW----TNHWVYWLGPFIGA-AIAAIVYDHIFIDDN 242 (252)
Q Consensus 208 ~~~~-----~~----~~~~vy~~~p~~Ga-~la~~l~~~~~~~~~ 242 (252)
+... .| ++.-+-.+|.++|+ ++-++.|.+.+.+++
T Consensus 209 ~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~ 253 (268)
T PRK11562 209 WFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKAN 253 (268)
T ss_pred HHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 2221 11 12223357888887 566778888876643
No 32
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=82.46 E-value=32 Score=29.91 Aligned_cols=178 Identities=17% Similarity=0.296 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhh--CC---Cccc
Q 025464 57 GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST--GG---LETS 131 (252)
Q Consensus 57 ~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~--~~---~~~~ 131 (252)
..+.-++.+++++.+.+++.+..-=+ |=-....-..+++++|++.+--|.-=.+|=++|++++.+++ .+ ....
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 45666788888888777765543211 32222334557889999988888877778888777765544 11 0111
Q ss_pred cc-----c---cCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccch
Q 025464 132 AF-----A---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVS 203 (252)
Q Consensus 132 ~~-----~---~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~ 203 (252)
.+ . -.-+.+..+.|.--++|-.+..+++... ...|... +.. ++....+..++...+.=...|-..-
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~-~~~k~~~-~K~----~~m~~pv~~Fv~~GfeH~VANm~~i 214 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMS-YSAKDGA-AKI----FAIILPVMLFVASGFEHSVANMFMI 214 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-hcccchh-hHH----HHHHHHHHHHHHcCCceeeehHHHH
Confidence 11 0 0123355677777778888888888764 3222211 111 2222223333334444444554332
Q ss_pred HHHHHhhc--CCCc-ce----ecchhhHHH-HHHHHHHHHHHhcCCC
Q 025464 204 FGPAVVSW--TWTN-HW----VYWLGPFIG-AAIAAIVYDHIFIDDN 242 (252)
Q Consensus 204 l~~~~~~~--~~~~-~~----vy~~~p~~G-a~la~~l~~~~~~~~~ 242 (252)
-..+...+ +|.+ .| .-.+|.++| +++-++.|++++++++
T Consensus 215 ~~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~ 261 (265)
T COG2116 215 PWAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQN 261 (265)
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccc
Confidence 21222222 4544 22 223455555 5666788888877644
No 33
>PRK10805 formate transporter; Provisional
Probab=81.07 E-value=38 Score=29.80 Aligned_cols=99 Identities=17% Similarity=0.324 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cCCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhh--CCC---cccc
Q 025464 59 ISASLAHAFALFVAVSVGANI-SGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST--GGL---ETSA 132 (252)
Q Consensus 59 ~~~a~~~g~~~~~~i~~~~~i-sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~--~~~---~~~~ 132 (252)
+..++.+.+++.+.+..-+.. +| |--.+++ .+.||.+|++.+-.|.-=.+|=++|+++.-++. .+. ..+.
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccH
Confidence 444666777777766655443 33 5554543 577888998888555555555555555443222 110 0000
Q ss_pred c-----c---cCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025464 133 F-----A---LSSGVSSWNAVVFEIVMTFGLVYTVYA 161 (252)
Q Consensus 133 ~-----~---~~~~~s~~~~~~~E~~~t~~l~~~v~~ 161 (252)
. . ..-+.++.+.|+-=++|.++...++..
T Consensus 145 ~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~ 181 (285)
T PRK10805 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWM 181 (285)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 011346677777777888888888775
No 34
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=56.55 E-value=91 Score=24.10 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHH
Q 025464 99 TLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIA 178 (252)
Q Consensus 99 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ 178 (252)
.|++.+.++ .+|+.+|+.+-|.+..-.. . ...++. ++..+..-.+++|++-+..-. ..+ +...+ .+..
T Consensus 5 ~~~~~~l~V---~~GG~~Ga~lRy~l~~~~~-~--~~~~~f-P~gTl~VNv~GsfllG~l~~~-~~~-~~~~~---~~~~ 72 (133)
T PRK14218 5 VWWQSLLLV---MLGGAFGSGLRFVIGSCLL-Q--RFGAGF-PWGTLAVNLIGSFVAGFLLIW-LDK-RGSAG---WPWR 72 (133)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH-H--hcCCCC-cHHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHH
Confidence 355555443 4889999988776642100 0 001122 345788899999998766533 122 21111 1122
Q ss_pred HHHHHHHHHHHcCCCCCccccccchHHHHHh---h----cCCCcceecchhhHHHHHHHHHHHHHH
Q 025464 179 IGFIVGANILAGGAFDGASMNPAVSFGPAVV---S----WTWTNHWVYWLGPFIGAAIAAIVYDHI 237 (252)
Q Consensus 179 ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~---~----~~~~~~~vy~~~p~~Ga~la~~l~~~~ 237 (252)
..+. .-.+|.+| +|+.... . +.|.....|.+..++++++++.+=..+
T Consensus 73 ~~l~----tGflGgfT--------TFSTf~~E~~~L~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 126 (133)
T PRK14218 73 MLLI----VGLIGGLT--------TFSSLMMECLVFVRSDRSLMVGIYLCITLLFGLLFVFLGARL 126 (133)
T ss_pred HHHH----HHHhchhc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11223334 3333222 1 345555679999999999988765433
No 35
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=51.17 E-value=2.4e+02 Score=27.38 Aligned_cols=42 Identities=31% Similarity=0.278 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025464 86 PAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGG 127 (252)
Q Consensus 86 PavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~ 127 (252)
.+|+.+++.....|.+....++.+.++|+.+|.+..+.+.+.
T Consensus 372 ~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 372 AAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred HHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444444556688999999999999999999999888763
No 36
>PRK09713 focB putative formate transporter; Provisional
Probab=47.02 E-value=2e+02 Score=25.26 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CC---cccc
Q 025464 58 LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG--GL---ETSA 132 (252)
Q Consensus 58 ~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~---~~~~ 132 (252)
-+..++.+.+++.+.+...+..-=+ |=. ++.....||.+|++.+-.|.-=.+|=++|+++.-++.. +. ....
T Consensus 67 ~ll~g~~F~vGLilIv~~g~ELfTg--N~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~ 143 (282)
T PRK09713 67 HLVGGLCFTLGFILLAVCGTSLFTS--SVM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAM 143 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCccccHH--HHH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchh
Confidence 3445666777777777654443212 212 22234688889888885544444444444444332221 00 0000
Q ss_pred c--------ccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025464 133 F--------ALSSGVSSWNAVVFEIVMTFGLVYTVYA 161 (252)
Q Consensus 133 ~--------~~~~~~s~~~~~~~E~~~t~~l~~~v~~ 161 (252)
. ...-+.++.+.|+--++|-.+...++..
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~ 180 (282)
T PRK09713 144 WGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWM 180 (282)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112356778888888888888888876
No 37
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=45.61 E-value=1.2e+02 Score=23.23 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHc
Q 025464 111 LLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAG 190 (252)
Q Consensus 111 ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~ 190 (252)
.+|+.+|+.+-|.+..-.. ..+ .++. ++..+..-.++++++-+..-. ..+ +...+ ..+...+. .-.+
T Consensus 7 ~lGg~lGa~~Ry~l~~~~~-~~~--~~~f-P~gTl~vNi~GsfllG~~~~~-~~~-~~~~~---~~~~~~l~----tGf~ 73 (132)
T PRK14219 7 GIAGILGALSRYYLGLTIH-EFW--HHTF-PLATLLINLAGCFLLAWLTTY-IAK-LNILP---SDVITGIG----TGFI 73 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcc--CCCC-cHHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHHHHHH----HHHc
Confidence 3788888887766542100 000 1112 345788889999998766543 122 21111 11211111 1122
Q ss_pred CCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHHH
Q 025464 191 GAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYDH 236 (252)
Q Consensus 191 ~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~~ 236 (252)
|.+| +|+.... .+.|...-.|.+..++++++++.+-..
T Consensus 74 GgfT--------TFSTf~~E~~~l~~~~~~~~a~~y~~~sl~~gl~a~~lG~~ 118 (132)
T PRK14219 74 GSFT--------TFSTFSVETIQLINHSEWSIAFLYVSCSILGGLIMSGLGYT 118 (132)
T ss_pred cchh--------hHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3333222 134555667999999988888766443
No 38
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=41.52 E-value=8.5 Score=29.07 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=16.2
Q ss_pred ccCCcCchHHHHHHHHhcc
Q 025464 79 ISGGHVNPAVTFGAFVGGH 97 (252)
Q Consensus 79 isGah~NPavTl~~~~~g~ 97 (252)
=|+||+||.+.++-.+.++
T Consensus 7 Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRR 25 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHhcc
Confidence 3789999999999988654
No 39
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=40.68 E-value=1.6e+02 Score=22.44 Aligned_cols=106 Identities=8% Similarity=0.066 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHc
Q 025464 111 LLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAG 190 (252)
Q Consensus 111 ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~ 190 (252)
.+|+.+|+.+-|.+..-.. ..+ .+.. ++..+..-.++++++-+..-. ..+ +...+ ..+...+. .-.+
T Consensus 8 ~~Gg~~Ga~~Ry~l~~~~~-~~~--~~~f-P~~Tl~vN~~GsfllG~~~~~-~~~-~~~~~---~~~~~~l~----tGfl 74 (128)
T PRK14212 8 AAGGALGAVSRYGLNNLTV-KLL--GDSF-PYGTLIVNCLGCFVLGFLMQW-GFS-SDSHN---THLKLMLT----AGFL 74 (128)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcc--cCCC-chHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHHHHHH----hhHh
Confidence 4788899888776652100 000 1112 245688889999998765433 222 11111 11222221 1122
Q ss_pred CCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHHHH
Q 025464 191 GAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYDHI 237 (252)
Q Consensus 191 ~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~~~ 237 (252)
|.+| +|+.... .++|...-.|....++++++++++=..+
T Consensus 75 GgfT--------TFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 120 (128)
T PRK14212 75 GAFT--------TFSTFSYETLDCFKAGDYFNGFSNILANVLLGLLMVFIGAYL 120 (128)
T ss_pred cCcc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3333322 1345556679999999998887765433
No 40
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=36.62 E-value=2.7e+02 Score=23.82 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCcc--cc-
Q 025464 58 LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG--GLET--SA- 132 (252)
Q Consensus 58 ~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~~~--~~- 132 (252)
-+..++.+.+++...+..-+..- -=|-.......+.||.+|++.+--|.-=.+|=++|+++.-.+.. +... +.
T Consensus 57 ~l~~g~~F~~Gl~lIv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~ 134 (250)
T PF01226_consen 57 KLVGGLVFPIGLVLIVFLGGELF--TGNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAM 134 (250)
T ss_dssp HHHHHHHHTHHHHHHHHHT---T--TTTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhc--ccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHH
Confidence 34556777777777766654432 22555555566788899999887777777777777776554431 0000 00
Q ss_pred -------cccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025464 133 -------FALSSGVSSWNAVVFEIVMTFGLVYTVYA 161 (252)
Q Consensus 133 -------~~~~~~~s~~~~~~~E~~~t~~l~~~v~~ 161 (252)
....-+.+.++.|+-=++|.++...++..
T Consensus 135 ~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~ 170 (250)
T PF01226_consen 135 GEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWL 170 (250)
T ss_dssp HHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01112446777888888888888888876
No 41
>PRK14225 camphor resistance protein CrcB; Provisional
Probab=35.49 E-value=2.1e+02 Score=22.17 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHH
Q 025464 109 AQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANIL 188 (252)
Q Consensus 109 aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~ 188 (252)
.=.+|+.+|+.+-|.+..-. .... ... .++..+..-.+++|++-+..-. ..++++...+ ..+...+.+ -
T Consensus 15 ~V~lGG~~Ga~~Ry~l~~~~-~~~~--~~~-fP~gTl~VNi~GsfllG~l~~~-~~~~~~~~~~--~~~~~~l~t----G 83 (137)
T PRK14225 15 AVGCGAAIGALLRFLSGWVI-VAIL--GAN-PLWGTSFVNIVGSFIIMFFATL-TGPEGRWLVS--PAWRQFVMG----G 83 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhc--CCC-CcHHHHHHHHHHHHHHHHHHHH-HHhcccccCC--HHHHHHHHH----H
Confidence 34578888888776654200 0000 111 2345788889999998665433 1111111111 112122211 1
Q ss_pred HcCCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHHH
Q 025464 189 AGGAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYDH 236 (252)
Q Consensus 189 ~~~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~~ 236 (252)
.+|.+| +|+.... .++|.....|.+..++++++++.+-..
T Consensus 84 flGgfT--------TFSTfs~E~~~L~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 130 (137)
T PRK14225 84 LCGGLT--------TFSSMSLDTFLLVLHGNAAFALAYLCGLVFLSLSAAMLGLI 130 (137)
T ss_pred Hhchhc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333 3333222 235666678999999999998876543
No 42
>PRK14195 camphor resistance protein CrcB; Provisional
Probab=33.47 E-value=2.1e+02 Score=21.66 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 025464 110 QLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILA 189 (252)
Q Consensus 110 Q~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~ 189 (252)
=.+|+.+|+.+-|.+..-.. ... .++. ++..+..-.++++++-+..-. ..+ +...+ ..+...+ ..-.
T Consensus 7 V~~Gg~~Ga~~Ry~l~~~~~-~~~--~~~f-P~gTl~vNi~GsfllG~~~~~-~~~-~~~~~---~~~~~~l----~tGf 73 (125)
T PRK14195 7 VAAGGALGSVARYLVGVGAL-RLM--GPAF-PWGTLAVNVTGSFLIGVLAGL-LAH-RWNAS---QEWRLFL----IVGV 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcc--CCCC-chHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHHHHH----HhHh
Confidence 34788899887776642100 000 1112 234688889999998766533 122 11111 1111111 1112
Q ss_pred cCCCCCccccccchHHHHH---hh----cCCCcceecchhhHHHHHHHHHHHHH
Q 025464 190 GGAFDGASMNPAVSFGPAV---VS----WTWTNHWVYWLGPFIGAAIAAIVYDH 236 (252)
Q Consensus 190 ~~~~tg~~lNPA~~l~~~~---~~----~~~~~~~vy~~~p~~Ga~la~~l~~~ 236 (252)
+|.+| +++... .. ++|.....|.+..++++++++++=..
T Consensus 74 ~GgfT--------TFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 119 (125)
T PRK14195 74 LGGFT--------TFSAFSLDAALLIERGAYGAAAAYIAASVVLSVAALFAGLA 119 (125)
T ss_pred ccCcc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 333322 22 34555668999999999988876443
No 43
>PRK14227 camphor resistance protein CrcB; Provisional
Probab=28.61 E-value=2.6e+02 Score=21.16 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 025464 110 QLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILA 189 (252)
Q Consensus 110 Q~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~ 189 (252)
=.+|+.+|+.+-+.+..-.+ ... ..+. ++..+..-.++++++-+.... ..+ +...+ ......+. .-.
T Consensus 7 V~~Gg~~Ga~~Ry~l~~~~~-~~~--~~~f-P~gTl~vN~~GsfllG~~~~~-~~~-~~~~~---~~~~l~l~----tGf 73 (124)
T PRK14227 7 VAIGGSIGAILRYFTGVYSA-KNL--GLDF-PYGTLIVNSVGSFILSFFMIL-FLE-KLSLD---PLWRLFVA----VGF 73 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhC--cCCC-cHHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHHHHHH----hhH
Confidence 34888889887766542100 000 1112 245688889999998665433 122 11111 11111111 112
Q ss_pred cCCCCCccccccchHHHHH---h----hcCCCcceecchhhHHHHHHHHHHHHH
Q 025464 190 GGAFDGASMNPAVSFGPAV---V----SWTWTNHWVYWLGPFIGAAIAAIVYDH 236 (252)
Q Consensus 190 ~~~~tg~~lNPA~~l~~~~---~----~~~~~~~~vy~~~p~~Ga~la~~l~~~ 236 (252)
+|.+| +|+... . .+.|.....|+...++++++++++-..
T Consensus 74 ~GgfT--------TFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~~~~lG~~ 119 (124)
T PRK14227 74 CGSFT--------TFSSFTYETIALFQDGDYTKAMLNIILNNVLSITSAFSGIV 119 (124)
T ss_pred hcccc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24344 333322 2 234555668999999999998876543
No 44
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=27.34 E-value=14 Score=33.25 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.2
Q ss_pred hhcccCCcCchHHHHHHHHhc
Q 025464 76 GANISGGHVNPAVTFGAFVGG 96 (252)
Q Consensus 76 ~~~isGah~NPavTl~~~~~g 96 (252)
.+.-+|||+.||+.++-.+..
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHh
Confidence 345589999999999988864
No 45
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=26.50 E-value=4.6e+02 Score=23.26 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=28.2
Q ss_pred CCccccc---cchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464 194 DGASMNP---AVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240 (252)
Q Consensus 194 tg~~lNP---A~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~ 240 (252)
.+.++|| +|++..+++++.| .|++|++-..=+++.-.+.+.-..+
T Consensus 223 ~l~~~G~~a~~~a~~~al~gg~~--a~~fwiGV~giGliiplll~~~~~~ 270 (305)
T COG3301 223 VLLSLGGVAAARALATALAGGFW--AWVFWIGVLGLGLIIPLLLKFGVNP 270 (305)
T ss_pred HHHHhCcHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445555 4667777776666 7788877655456666666655555
No 46
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=26.46 E-value=3.1e+02 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 025464 100 LLRSILYWIAQLLGSVVACLLLKFST 125 (252)
Q Consensus 100 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 125 (252)
+...+.+..+-+.|+.+|..+.+.+.
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKALK 148 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777888888887776654
No 47
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=25.49 E-value=3e+02 Score=20.87 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHc
Q 025464 111 LLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAG 190 (252)
Q Consensus 111 ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~ 190 (252)
.+|+.+|+.+-+.+..-. .... ..+. ++..+..-.++++++-+.......+++...+ .++...+ ..-.+
T Consensus 7 ~~Gg~lGa~~Ry~l~~~~-~~~~--~~~f-p~gTl~vNi~GsfllG~~~~~~~~~~~~~~~---~~~~~~l----~tGf~ 75 (127)
T PRK14206 7 ALGSALGGTLRFWLSGLV-AEAT--GGTF-PWGTLVINVSGSFLIGFFATLTGPEGRVFVG---ESWRLFV----MVGVC 75 (127)
T ss_pred HHhHHHHHHHHHHHHHHH-hhcc--cCCC-chHHHHHHHHHHHHHHHHHHHHhhcccccCC---HHHHHHH----HHHHc
Confidence 478888888776654210 0000 1112 2356888999999987765431111111111 1222222 11223
Q ss_pred CCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHH
Q 025464 191 GAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYD 235 (252)
Q Consensus 191 ~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~ 235 (252)
|.+| +|+.... .++|.....|++..++++++++++=.
T Consensus 76 GgfT--------TFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~~G~ 119 (127)
T PRK14206 76 GGFT--------TFSSFSLQTLNLARDGDWLRAGGNVVLSVVFCLLAVWLGH 119 (127)
T ss_pred cccc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3333222 23455566899999999999887643
No 48
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=24.90 E-value=4.3e+02 Score=22.40 Aligned_cols=102 Identities=16% Similarity=0.273 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhC---C--Ccc-c
Q 025464 58 LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG---G--LET-S 131 (252)
Q Consensus 58 ~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~---~--~~~-~ 131 (252)
.+..++.+.+++.+.+..-+..- -=|-.......+.||.+|++.+-.|.-=.+|=++|+.+.-.+.. . ... +
T Consensus 43 ~~l~~~~F~~gl~~Iv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~ 120 (239)
T TIGR00790 43 KLVGGATFPIGLILVVIAGSDLF--TGNTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGP 120 (239)
T ss_pred HHHHHHHHHHHHheeeeeCcccc--ccchHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccH
Confidence 34445666666665554433321 11433333346688889988887777777777777776544331 1 001 0
Q ss_pred --cc-----ccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025464 132 --AF-----ALSSGVSSWNAVVFEIVMTFGLVYTVYA 161 (252)
Q Consensus 132 --~~-----~~~~~~s~~~~~~~E~~~t~~l~~~v~~ 161 (252)
.. ...-+.+..+.++-=+++.++..+.+..
T Consensus 121 ~~~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~ 157 (239)
T TIGR00790 121 WGVGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112346677777777788888777765
No 49
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=24.52 E-value=3.2e+02 Score=20.85 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHc
Q 025464 111 LLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAG 190 (252)
Q Consensus 111 ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~ 190 (252)
.+|+.+|+.+-|.+..-. . .++. ++..++.-.+++|++-+.... ..++.. .+ ..+...+.. -.+
T Consensus 7 ~lGG~~Ga~~Ry~l~~~~-----~-~~~f-P~gTl~vNi~GsfllG~l~~~-~~~~~~-~~---~~~~~~l~t----Gfl 70 (129)
T PRK14231 7 GVFGALGGMCRYAMNLWL-----G-GGDF-PSATLAVNLIGCFLLAFLMQF-LAEKSR-IS---LVILNGIGT----GFI 70 (129)
T ss_pred HHhHHHHHHHHHHHHHHh-----c-CCCC-cHHHHHHHHHHHHHHHHHHHH-HHhccC-CC---HHHHHHHHh----HHh
Confidence 488899998877664211 0 1122 245788889999998776533 222111 11 112222211 122
Q ss_pred CCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHHHH
Q 025464 191 GAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYDHI 237 (252)
Q Consensus 191 ~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~~~ 237 (252)
|.+| +|+.... .++|.....|++..++++++++++=..+
T Consensus 71 GgfT--------TFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 116 (129)
T PRK14231 71 GAFT--------TFSAFSVDTIQLVQSGAWLLAVSYVLASFIGGLIMVKFGRML 116 (129)
T ss_pred cccc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344 3333222 1345556689999999988887765443
No 50
>PRK14199 camphor resistance protein CrcB; Provisional
Probab=23.46 E-value=3.4e+02 Score=20.70 Aligned_cols=105 Identities=9% Similarity=0.006 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 025464 110 QLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILA 189 (252)
Q Consensus 110 Q~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~ 189 (252)
=.+|+.+|+.+-+.+..-.. ... ... -++..+..-.++++++-+..-. ..+ +...+ ......+.+ -.
T Consensus 10 V~~GG~~GA~~Ry~l~~~~~-~~~--~~~-fP~gTl~VNi~GsfllG~~~~~-~~~-~~~~~---~~~~~~l~t----Gf 76 (128)
T PRK14199 10 VGLGGFIGASLRYLISIFAA-KMF--NGN-FPYGTLIVNIVGALLIGFIMEF-SMD-TALIS---SNMKLFLTT----GI 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhc--cCC-CchHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHHHHHHh----HH
Confidence 45888899988776642100 000 011 2245688889999988665432 122 11111 112211111 11
Q ss_pred cCCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHH
Q 025464 190 GGAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYD 235 (252)
Q Consensus 190 ~~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~ 235 (252)
+|.+| +++.... .+.|.....|++..++++++++++=.
T Consensus 77 ~GgfT--------TFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~ 121 (128)
T PRK14199 77 MGGLT--------TFSTFSYETINLITNGNILLGIENIILNLGLSLLGVVIGQ 121 (128)
T ss_pred hcccc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444 3333222 13455667899999999888877643
No 51
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=23.08 E-value=3.5e+02 Score=20.66 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHc
Q 025464 111 LLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAG 190 (252)
Q Consensus 111 ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~ 190 (252)
.+|+.+|+.+-|.+..-.. ... ..+. ++..+..-.++++++-+..-. ..+ +...+ ......+. .-.+
T Consensus 11 ~~GG~lGa~~Ry~l~~~~~-~~~--~~~f-P~gTl~VN~~GsfllG~~~~~-~~~-~~~~~---~~~~~~l~----tGf~ 77 (127)
T PRK14200 11 ALGGAFGACSRYLVSELCV-VLL--GRGF-PYGTLTVNVVGSFIMGLLIAA-FEN-ELLAT---EPWRQIIG----LGFL 77 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhc--CCCC-chHHHHHHHHHHHHHHHHHHH-HHh-ccCCC---HHHHHHHH----HHHh
Confidence 4788888887766542100 000 1112 345688889999998766533 122 21111 11111111 1122
Q ss_pred CCCCCccccccchHHHHHh-------hcCCCcceecchhhHHHHHHHHHHHHHH
Q 025464 191 GAFDGASMNPAVSFGPAVV-------SWTWTNHWVYWLGPFIGAAIAAIVYDHI 237 (252)
Q Consensus 191 ~~~tg~~lNPA~~l~~~~~-------~~~~~~~~vy~~~p~~Ga~la~~l~~~~ 237 (252)
|.+| +|+.... .++|.....|.+..++++++++++=..+
T Consensus 78 GgfT--------TFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 123 (127)
T PRK14200 78 GALT--------TFSTFSMDNVLLMQQGAFFKMGLNVLLNVVLSISAAWIGFQL 123 (127)
T ss_pred ccch--------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3333222 1345556689999999999998775443
No 52
>PRK14221 camphor resistance protein CrcB; Provisional
Probab=22.79 E-value=3.4e+02 Score=20.52 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHH
Q 025464 109 AQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANIL 188 (252)
Q Consensus 109 aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~ 188 (252)
.=.+|+.+|+.+-+.+..-.+ . .+.. ++..++.-+++++++-+..-.. .+++. .. .++...+.+ -
T Consensus 10 ~V~lGg~~Ga~~R~~l~~~~~--~---~~~f-P~gTl~vNi~G~fllG~~~~~~-~~~~~-~~---~~~~~~l~t----G 74 (124)
T PRK14221 10 GIFLAAMLGGLVRYLVSTWLP--A---SPDF-PWGTLFVNYLGIFCLIYLVKGY-LVYKG-TS---KGLILALGT----G 74 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--c---cCCC-chHHHHHHHHHHHHHHHHHHHH-Hhccc-CC---HHHHHHHHH----H
Confidence 345888999988776653111 0 1122 2346888899999987654221 12111 11 122222211 1
Q ss_pred HcCCCCCccccccchHHHHHhh-------cCCCcceecchhhHHHHHHHHH
Q 025464 189 AGGAFDGASMNPAVSFGPAVVS-------WTWTNHWVYWLGPFIGAAIAAI 232 (252)
Q Consensus 189 ~~~~~tg~~lNPA~~l~~~~~~-------~~~~~~~vy~~~p~~Ga~la~~ 232 (252)
.+|.+| +|+..... +.|.....|....++++++++.
T Consensus 75 f~GgfT--------TFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~~~~ 117 (124)
T PRK14221 75 FCGGLT--------TFSSLMLDTVKLLDTGRYLSLILYLLLSIGGGLLLAY 117 (124)
T ss_pred Hhchhh--------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223333 33333221 3455667899999999988654
No 53
>PRK14217 camphor resistance protein CrcB; Provisional
Probab=22.20 E-value=3.7e+02 Score=20.70 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHc
Q 025464 111 LLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAG 190 (252)
Q Consensus 111 ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~ 190 (252)
.+|+.+|+.+-|.+..-. ...+ ..+. ++..+..-.++++++-+..-.. .++.. .. ..+...+. .-.+
T Consensus 10 ~iGG~lGa~~Ry~l~~~~-~~~~--~~~f-P~gTl~VNi~GsfllG~~~~~~-~~~~~-~~---~~~~~~l~----tGfl 76 (134)
T PRK14217 10 AIGGSLGAMSRYLVTIMA-QNAW--GIKF-PYGTLLVNTLGSFLAGFFLIVL-VGRFS-AE---ESFRLFLF----TGFL 76 (134)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhhc--CCCC-cHHHHHHHHHHHHHHHHHHHHH-HhccC-CC---HHHHHHHH----HHHh
Confidence 378888888766554210 0000 1112 2456888899999987665331 22111 11 11211111 1122
Q ss_pred CCCCCccccccchHHHHHh----hcCCCcceecchhhHHHHHHHHHHHHH
Q 025464 191 GAFDGASMNPAVSFGPAVV----SWTWTNHWVYWLGPFIGAAIAAIVYDH 236 (252)
Q Consensus 191 ~~~tg~~lNPA~~l~~~~~----~~~~~~~~vy~~~p~~Ga~la~~l~~~ 236 (252)
|.+|-- -+++.... .++|.....|++..++++++++++=..
T Consensus 77 GgfTTF-----STf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~ 121 (134)
T PRK14217 77 GAFTTF-----SSFAAESLFMFEQGYWFKLITNILVNNVGSLSMVFIGTL 121 (134)
T ss_pred chhccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333310 02222222 234555668999999998888765443
No 54
>PRK09979 putative rho operon leader peptide; Provisional
Probab=20.30 E-value=37 Score=18.84 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=13.0
Q ss_pred CCCCccccccchHHHHH
Q 025464 192 AFDGASMNPAVSFGPAV 208 (252)
Q Consensus 192 ~~tg~~lNPA~~l~~~~ 208 (252)
.++|.++||.-.|+.+.
T Consensus 5 qisgsslnpscrfssay 21 (33)
T PRK09979 5 QISGSSLNPSCRFSSAY 21 (33)
T ss_pred cccCCcCCccccccccc
Confidence 46899999987776544
No 55
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=20.05 E-value=6.5e+02 Score=22.66 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=65.8
Q ss_pred CCcCchHHHHHHHH-hcccchhHHH-HHHHHHHHHHHHHHH-HHHHhhCCCcccccccCCCCchHHHHHHHHHHHHHHHH
Q 025464 81 GGHVNPAVTFGAFV-GGHITLLRSI-LYWIAQLLGSVVACL-LLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 157 (252)
Q Consensus 81 Gah~NPavTl~~~~-~g~~~~~~~~-~yi~aQ~~Ga~~g~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~~l~~ 157 (252)
|+|=+ +-.++..+ .|-++.+++. .--+..++|++++.. ..+-+.++...+ ...+. .+..|...+.++-.
T Consensus 20 Gand~-ana~gtaVgs~alt~~~Av~laavf~f~Ga~l~g~~V~~TI~~~iv~~-----~~~~~--~~~~~~~~aaLlaa 91 (326)
T COG0306 20 GANDT-ANAVGTAVGSGALTPRQAVLLAAVFNFLGALLGGGNVAETIGSGIVDP-----GLLND--SLTPAGVLAALLAA 91 (326)
T ss_pred cccch-hhhhhhhhccCCccHHHHHHHHHHHHHHHHHHcCccHHHHHhcCCCCc-----hhccc--hhhHHHHHHHHHHH
Confidence 45544 55666666 3445655544 334567777666553 334443321111 11111 34455555555544
Q ss_pred HHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcc----eecchhhHHHHHHHHHH
Q 025464 158 TVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNH----WVYWLGPFIGAAIAAIV 233 (252)
Q Consensus 158 ~v~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~----~vy~~~p~~Ga~la~~l 233 (252)
.+..+.... .+-+-....-.+|-.+.+..-..+. . .+|+.. -..++.|++|..++.++
T Consensus 92 ~~w~~ia~~-~GiP~StshaiiGaiiG~gla~~~~-----~------------~~~~~~~~Iv~swvlsPii~~~ia~~l 153 (326)
T COG0306 92 ILWNLIATY-LGIPVSTSHALIGAIIGAGLALGGG-----V------------VDWGVLGKIVASWVLSPILGGVLAYLL 153 (326)
T ss_pred HHHHHHHHH-cCCchhHHHHHHHHHHHHHHHHccc-----c------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322111 1122223444566666655543321 1 123222 12467999999999999
Q ss_pred HHHHhcC
Q 025464 234 YDHIFID 240 (252)
Q Consensus 234 ~~~~~~~ 240 (252)
|+.+.+.
T Consensus 154 ~~~~~~~ 160 (326)
T COG0306 154 YSLLRRL 160 (326)
T ss_pred HHHHHHH
Confidence 9988665
Done!