Your job contains 1 sequence.
>025468
MSSNSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSK
GYGFVTFKEPEAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRST
SSAPANHVQWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVN
GHFPQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVPAIISKPA
SIAPNTGALALH
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025468
(252 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 634 4.8e-62 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 429 2.6e-40 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 427 4.2e-40 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 393 1.7e-36 1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 382 2.4e-35 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 380 4.0e-35 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 352 3.7e-32 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 343 3.3e-31 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 275 2.2e-27 2
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 274 2.8e-27 2
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 267 1.2e-26 2
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 272 1.5e-26 2
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 280 1.6e-24 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 280 1.6e-24 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 279 2.0e-24 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 279 2.0e-24 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 277 3.3e-24 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 277 3.3e-24 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 277 3.3e-24 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 275 5.3e-24 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 274 6.8e-24 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 273 8.7e-24 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 273 8.7e-24 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 272 1.1e-23 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 272 1.1e-23 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 271 1.4e-23 1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 270 1.8e-23 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 269 2.3e-23 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 267 3.8e-23 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 266 4.8e-23 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 261 1.6e-22 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 261 1.6e-22 1
TAIR|locus:2077577 - symbol:AT3G06970 species:3702 "Arabi... 249 3.0e-21 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 248 3.9e-21 1
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 215 7.5e-20 2
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 220 3.6e-18 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 190 9.2e-17 2
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 203 2.3e-16 1
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 181 2.1e-15 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 199 2.5e-15 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 197 4.1e-15 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 197 4.1e-15 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 197 5.5e-15 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 194 6.5e-15 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 194 8.8e-15 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 194 8.8e-15 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 194 8.8e-15 1
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 192 1.3e-14 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 178 2.3e-14 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 190 2.4e-14 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 183 3.0e-14 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 178 1.0e-13 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 176 1.6e-13 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 181 2.2e-13 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 174 2.7e-13 1
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 181 3.4e-13 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 173 3.4e-13 1
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 173 3.4e-13 1
UNIPROTKB|D6RBQ9 - symbol:HNRNPD "Heterogeneous nuclear r... 173 3.4e-13 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 172 4.4e-13 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 172 4.4e-13 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 176 4.7e-13 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 171 5.6e-13 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 170 7.1e-13 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 179 8.8e-13 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 177 9.9e-13 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 169 1.1e-12 2
UNIPROTKB|H0YHB7 - symbol:MSI1 "RNA-binding protein Musas... 169 1.1e-12 1
DICTYBASE|DDB_G0287335 - symbol:DDB_G0287335 "RNA-binding... 168 1.2e-12 1
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 168 1.2e-12 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 174 1.4e-12 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 177 1.5e-12 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 167 1.5e-12 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 178 1.6e-12 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 177 1.8e-12 1
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 177 1.8e-12 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 166 1.9e-12 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 166 1.9e-12 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 173 2.4e-12 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 165 2.4e-12 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 165 2.4e-12 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 165 2.4e-12 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 165 2.4e-12 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 165 2.4e-12 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 165 2.4e-12 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 169 2.8e-12 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 176 3.0e-12 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 164 3.1e-12 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 172 3.8e-12 1
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 163 3.9e-12 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 163 3.9e-12 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 162 5.0e-12 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 162 5.0e-12 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 174 5.0e-12 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 173 6.3e-12 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 176 6.3e-12 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 175 6.4e-12 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 161 6.4e-12 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 173 6.6e-12 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 172 7.2e-12 1
WARNING: Descriptions of 748 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 128/229 (55%), Positives = 158/229 (68%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G FGDT LTKVFVGGLAW+T +EA+ +HF KYGDILEAVIISDKLT RSKGYGFVTFK+
Sbjct: 9 GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQW 130
+AA +ACED+TPIINGRRANCNLASLG R +S + T PQQG G R+T NH QW
Sbjct: 69 KAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQW 128
Query: 131 YYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYP-- 188
YYP+G H Q+HQAVPFYGY +A ++++NQ K+ Y GG+Y+NG++ QM P
Sbjct: 129 YYPSGF-TNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQ-KVGYVGGTYMNGYYAQMQPQP 186
Query: 189 -GQP---------------IVGATNTLMPIYPLYHFHQSQTMGLPAHIF 221
QP +VGA + ++P Y +Y +HQSQ +G P F
Sbjct: 187 QSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSF 235
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 107/219 (48%), Positives = 130/219 (59%)
Query: 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEA 72
FGDTT TKVFVGGLAWET E LR HFD+YGDILEAV+I+DK TGRSKGYGFVTF++PEA
Sbjct: 18 FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Query: 73 AKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYY 132
A++AC D TPII+GRRANCNLASLG RP A P V P S + +
Sbjct: 78 ARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLH 137
Query: 133 PAGTP--ATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQ 190
P P +++Q P YG +P D Y+Q + Y G Y+ + Q+Y G
Sbjct: 138 FGSHPYHQPPTYNYQQGVVYP-YGVTP--YGPDYMYSQSQGFY--GPYMGQQYLQVY-GV 191
Query: 191 PIVGATNTLMPIYPLYHFHQ-SQTMGLP-AHIFPPTTAG 227
P GA N+ P Y + Q S T +P AH + TAG
Sbjct: 192 P--GAVNS-----PGYQYGQLSHT--IPGAHGY---TAG 218
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 100/207 (48%), Positives = 127/207 (61%)
Query: 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEA 72
FGDTT TKVFVGGLAWET E LR+HF++YG+ILEAV+I+DK TGRSKGYGFVTF++PEA
Sbjct: 18 FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77
Query: 73 AKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRS----TSSAPANHV 128
A++AC D TPII+GRRANCNLASLG RP A P + P S P +
Sbjct: 78 ARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSL 137
Query: 129 QWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYP 188
YP P P+++ Q V Y Y T + Y+Q + Y+ Y+ + Q+Y
Sbjct: 138 IGNYPYQQPL-PYNYQQ---GV-VYPYGVTAYGPEYMYSQSQGLYS--PYMGQQYLQVY- 189
Query: 189 GQPIVGATNTLMPIYPLYHFHQ-SQTM 214
G P GA N+ P+Y + Q SQT+
Sbjct: 190 GVP--GAVNS-----PVYQYGQLSQTI 209
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 94/202 (46%), Positives = 123/202 (60%)
Query: 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE 69
IG GDTT TKVFVGGLAWET +E +++HF+++G+ILEAV+I+DK +GRSKGYGFVTF+E
Sbjct: 5 IG-LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
Query: 70 PEAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQ 129
EAA+ AC DATP+I+GRRANCNLASLG +R S +TP G G + + +Q
Sbjct: 64 AEAARSACVDATPVIDGRRANCNLASLGLQR--SKPSTPNHGGG--GRINNMRVMMSTMQ 119
Query: 130 WYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKL--SY---TGGSY-VNGH 182
+ P P P H H + +GYSP + D S L Y +GG Y V G+
Sbjct: 120 TGFGPPPPPQPPTFTHYPHLPLNLFGYSP--YSPDYSSFPTNLYGMYGCTSGGQYGVYGN 177
Query: 183 FPQMYPGQPIVGATNTLMPIYP 204
+ G + A + P YP
Sbjct: 178 --RNSGGGGLTAAAASATPFYP 197
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 92/207 (44%), Positives = 120/207 (57%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DT LTK+FVGGLAWET R+ +R +F+++G+I+EAV+I+DK TGRSKGYGFVTFKE EAA
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNV--GPRSTSSAPANHVQWYY 132
+AC++ P+I+GRRANCNLA LGA++PR T P+ G+ P S A Q+
Sbjct: 78 RACQNMNPVIDGRRANCNLACLGAQKPRPP--TSPRHGTGRFRSPGSGVGLVAPSPQFRG 135
Query: 133 PAGTPATPFHHHQHHQA-VPF----YGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMY 187
+ + A Q H A PF YG+S + + Y P Y Y F Y
Sbjct: 136 SSSSSAFVHQQQQQHTAQFPFPYSTYGFSG--YSQEGMY--PMNYYNHHLYGGQQFSP-Y 190
Query: 188 PGQPIVGATNTL---MPIYPLYHFHQS 211
G P G+T P YP Y+ QS
Sbjct: 191 MGHPSAGSTGMFHGFYPYYPQYNAAQS 217
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 100/243 (41%), Positives = 132/243 (54%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TKVFVGGLAWET + +LR +F+++GDI+EAV+I+DK +GRSKGYGFVTF +PEAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTS-SAP-ANHVQWYY 132
KAC D P+I+GRRANCNLA+ G +R + +S P G +VG R ++P H
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSS---PIHG-HVGGRGMKVTSPFKTHFGTAA 118
Query: 133 PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTG--GSYVNGHFPQMYPGQ 190
A PF H+ PF G+S + + YN P SY G H P MY
Sbjct: 119 TAIPSPLPFSHYTLPYTNPF-GFS----SYSMDYNYPTQSYYNVYGGATAQH-P-MYGSG 171
Query: 191 PIVG-ATNTLMPIYPLYHFHQSQ-------TMGLPAHIFPPTTAGHMTTVPAIISKPASI 242
P+ G A YP F + + P H+F + G P P S+
Sbjct: 172 PMTGVAAAPAAGFYPYLQFAEGNGPVTGYAPLHYPNHMFHYSAPGG--NYPHHNGSPVSL 229
Query: 243 APN 245
AP+
Sbjct: 230 APS 232
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 88/207 (42%), Positives = 115/207 (55%)
Query: 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEA 72
FGDTT TKVFVGGLAWETP + +R +F+++G+ILEAVII+DK TG+SKGYGFVTF+E ++
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 73 AKKACEDATPIINGRRANCNLASLGARRP---RSASAT-PPQQGSNVGPRS-TSSA---- 123
A +A D P+I+GR+ANCN+AS G RP R T P Q + GP + T A
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLP 130
Query: 124 PANHVQWYYPA-GTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGH 182
PA Q YP+ G P +HQA+ Y+ T + Y Q + Y GG+
Sbjct: 131 PAAAPQLMYPSYGYTYNP-DQFGYHQAL----YN-TQLQQAQYYQQQQQLYGGGATSPSS 184
Query: 183 FPQMYPGQPIVGATNTLMPIYPLYHFH 209
P + P P H H
Sbjct: 185 SGATIMPSPYYYGYSLQAPRVPYQHHH 211
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 90/254 (35%), Positives = 133/254 (52%)
Query: 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEA 72
FGDTT TKVFVGGLAWETP + +R +FD++G+ILEAVII+DK TG+SKGYGFVTF++ ++
Sbjct: 11 FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
Query: 73 AKKACEDATPIINGRRANCNLASLGARRP-----RSASATPPQ-QGSNVGPRSTSSAPAN 126
A +A D P+I+GR+ANCN+AS G RP R +P Q QG + +AP
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSSYTGMAAPVQ 130
Query: 127 HV---QWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHF 183
Q YP+ T + +HQA+ Y+ Y Q ++ Y GG +
Sbjct: 131 QAAAAQLMYPS-YGYTYNSEYGYHQAL----YNAQL--QQAQYYQQQM-YGGGGATSPSS 182
Query: 184 PQMYPGQPIVGATNTLMPI-----YPLYHFHQSQTMGLPAHIFPPTTAGHMTTVPAIISK 238
+ P + P + YH HQ Q + P+ + ++ P+ +
Sbjct: 183 SNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRL--PSASSYLI-YPSNVEA 239
Query: 239 P--ASIAPNTGALA 250
P +++ + G L+
Sbjct: 240 PTPSNVPTSQGPLS 253
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 275 (101.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 52/89 (58%), Positives = 71/89 (79%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 21 DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAE 80
Query: 75 KACEDATPIINGRRANCNLASLGARRPRS 103
+AC+D PII+GR+AN NLA LGA+ PRS
Sbjct: 81 RACKDPNPIIDGRKANVNLAYLGAK-PRS 108
Score = 47 (21.6 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 215 GLPAHIFPPTTAGHMTTVPAIISKPAS 241
G ++++PP TAG + + I P S
Sbjct: 185 GFLSYMYPPGTAGPSSAISTPIPNPLS 211
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 274 (101.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 53/93 (56%), Positives = 72/93 (77%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRS 103
AA++AC+D PII+GR+AN NLA LGA+ PRS
Sbjct: 86 AAAERACKDPNPIIDGRKANVNLAYLGAK-PRS 117
Score = 47 (21.6 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 22/77 (28%), Positives = 31/77 (40%)
Query: 122 SAPANHVQWYYPAGTPATPFHHHQHHQAVPFYGY--SPTCIATDVSYNQPK-----LSYT 174
+AP + Y TPA+P + Y Y SP A+ V Y+ P LS
Sbjct: 159 AAPVPSLSSPYIEYTPASPAYAQYPPATYDQYPYAASPATAASFVGYSYPAAVPQALSAA 218
Query: 175 ---GGSYVNGHFPQMYP 188
G ++V PQ+ P
Sbjct: 219 APAGTTFVQYQAPQLQP 235
Score = 42 (19.8 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 212 QTMGL-PAHIFPPTTAGHMTTVPA 234
+T GL P +I+PP +PA
Sbjct: 136 RTYGLTPHYIYPPAIVQPSVVIPA 159
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 267 (99.0 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 52/93 (55%), Positives = 71/93 (76%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRS 103
AA++AC+D P I+GR+AN NLA LGA+ PRS
Sbjct: 86 AAAERACKDPNPNIDGRKANVNLAYLGAK-PRS 117
Score = 48 (22.0 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 122 SAPANHVQWYYPAGTPATPFHHHQHHQAVPFYGY--SPTCIATDVSYNQP 169
+AP + Y TPA+P + Y Y SP A+ VSY P
Sbjct: 159 AAPVPSLSSPYIEYTPASPAYAQYPPATYDQYPYAASPATAASFVSYGYP 208
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 272 (100.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 53/93 (56%), Positives = 71/93 (76%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 24 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRS 103
AA +AC+D PII+GR+AN NLA LGA+ PRS
Sbjct: 84 AAADRACKDPNPIIDGRKANVNLAYLGAK-PRS 115
Score = 42 (19.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 212 QTMGL-PAHIFPPTTAGHMTTVPA 234
+T GL P +I+PP +PA
Sbjct: 134 RTYGLTPHYIYPPAIVQPSVVIPA 157
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 81/215 (37%), Positives = 112/215 (52%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSA----PANHVQW 130
+AC+D PII+GR+AN NLA LGA+ PRS Q G +G + A P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRSI-----QTGFTIGVQQLHPAFIQRPFGLTPH 120
Query: 131 Y-YPAGT--PATPFHHHQHHQAVPFYGYSPTCIA----TDVSYNQ-PKLSYTGGSYVN-G 181
Y YP P+ A P+ Y+ A T +Y+Q P + +V G
Sbjct: 121 YVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYDQYPYAASPAAGFVGYG 180
Query: 182 HFPQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGL 216
+ + P PI +T P P F Q Q L
Sbjct: 181 YTGAVQP--PITAST----PAAPATAFVQYQPQQL 209
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 72/165 (43%), Positives = 97/165 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA VQ P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQIH--PAL-VQ--RPY 115
Query: 135 GTPATPFHHHQHHQAVPFYGYS-PTCIATDVSYNQPKLSYTGGSY 178
G PA H+ + QA G P T + P + YT +Y
Sbjct: 116 GIPA----HYVYPQAYVQQGLVIPHVQQTAAASTSPYIDYTSAAY 156
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 82/216 (37%), Positives = 111/216 (51%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 24 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRSAS---ATPPQQGSNVGPRSTSSAPANH 127
AA +AC+D PII+GR+AN NLA LGA+ PRS A QQ + T ++
Sbjct: 84 AAADRACKDPNPIIDGRKANVNLAYLGAK-PRSLQTGFAVGVQQLHPTLIQRTYGLTPHY 142
Query: 128 VQWYYPAGT------PATPFH-----HHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGG 176
+ Y PA PATP + ++ A P Y P AT Y T
Sbjct: 143 I--YPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYPP--ATYDQYPYAASPATAT 198
Query: 177 SYVNGHFPQMYPGQPIVGATNTLMPIYPLYHFHQSQ 212
S+V +P P P + AT + Y Q Q
Sbjct: 199 SFVGYGYPAAIP--PALSATAPAGTTFVQYQAPQLQ 232
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 68/166 (40%), Positives = 94/166 (56%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYY-P 133
+AC+D PII+GR+AN NLA LGA+ PR P T P H + P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRVMQ-----------PGFTFGVPQIHPAFIQRP 114
Query: 134 AGTPATPFHHHQHHQ-AVPFYGYSPTCIATDVSYNQPKLSYTGGSY 178
G P + Q +V PT AT + + P + YTG +Y
Sbjct: 115 YGIPTHYVYPQAFMQPSVVIPHIQPT--ATSATASSPYIDYTGAAY 158
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 71/165 (43%), Positives = 97/165 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQIH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQAVPFYGYS-PTCIATDVSYNQPKLSYTGGSY 178
G PA H+ + QA G P T + P + YT +Y
Sbjct: 116 GIPA----HYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAY 156
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 71/165 (43%), Positives = 96/165 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQLH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQ-AVPFYGYSPTCIATDVSYNQPKLSYTGGSY 178
G PA + Q V PT A + P + YTG +Y
Sbjct: 116 GIPAHYVYPQAFVQPGVVIPHVQPTAAAASTT---PYIDYTGAAY 157
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 71/165 (43%), Positives = 96/165 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQLH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQ-AVPFYGYSPTCIATDVSYNQPKLSYTGGSY 178
G PA + Q V PT A + P + YTG +Y
Sbjct: 116 GIPAHYVYPQAFVQPGVVIPHVQPTAAAASTT---PYIDYTGAAY 157
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 71/166 (42%), Positives = 98/166 (59%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQLH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQAVPFYGYSPTCI--ATDVSYNQPKLSYTGGSY 178
G PA H+ + QA G + A + P + YTG +Y
Sbjct: 116 GIPA----HYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYTGAAY 157
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 53/93 (56%), Positives = 72/93 (77%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRS 103
AA++AC+D PII+GR+AN NLA LGA+ PRS
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAK-PRS 94
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 70/165 (42%), Positives = 96/165 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQLH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQ-AVPFYGYSPTCIATDVSYNQPKLSYTGGSY 178
G PA + Q V PT A + P + YTG +Y
Sbjct: 116 GIPAHYVYPQAFVQPGVVIPHVQPTAAAASTA---PYIDYTGAAY 157
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 70/165 (42%), Positives = 96/165 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQLH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQ-AVPFYGYSPTCIATDVSYNQPKLSYTGGSY 178
G PA + Q V PT A + P + YTG +Y
Sbjct: 116 GIPAHYVYPQAFVQPGVVIPHVQPTAAAASTT---PYIDYTGAAY 157
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/164 (42%), Positives = 94/164 (57%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQIH--PAL-IQ--RPF 115
Query: 135 GTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSY 178
G PA + H Q + A S P + YT +Y
Sbjct: 116 GIPAHYVYPHAFVQPGVVIPHVQQAAAASTS---PYIDYTSAAY 156
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 51/107 (47%), Positives = 74/107 (69%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DT TK++VGGL WET E LR +F+++GDI+ ++ D+ TGRS+GYGFVTF++ E+A
Sbjct: 48 DTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESAT 107
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTS 121
+AC++ P+I+GR A CNLA +G R + +A QQ + P TS
Sbjct: 108 RACQNPKPVIDGREAKCNLAYIGGRVNNNQNAQQ-QQVLPMYPTGTS 153
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 75/191 (39%), Positives = 103/191 (53%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQW 130
AA++AC+D P I+GR+AN NLA LGA+ PRS Q G +G P +Q
Sbjct: 86 AAAERACKDPNPNIDGRKANVNLAYLGAK-PRSL-----QTGFAIG---VQQVPPTLIQR 136
Query: 131 YYPAGTPATPFHHHQHHQAV--PFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQM-Y 187
Y G TP H+ + QA+ P P +S P + YT S +P Y
Sbjct: 137 TY--GL--TP--HYIYPQAIVQPSV-VIPAAPVPPLS--SPYIEYTPASPAYAQYPPATY 187
Query: 188 PGQPIVGATNT 198
P + T
Sbjct: 188 DQYPYAASPAT 198
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 70/166 (42%), Positives = 98/166 (59%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 25 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 84
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+AC+D PII+GR+AN NLA LGA+ PR Q G G + PA +Q P
Sbjct: 85 RACKDPNPIIDGRKANVNLAYLGAK-PRIM-----QPGFAFGVQQLH--PAL-IQ--RPF 133
Query: 135 GTPATPFHHHQHHQAVPFYGYSPTCI--ATDVSYNQPKLSYTGGSY 178
G PA H+ + QA G + A + P + YTG +Y
Sbjct: 134 GIPA----HYVYPQAFVQPGVVIPHVQPAAAAASTTPYIDYTGAAY 175
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 51/88 (57%), Positives = 70/88 (79%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA+ PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PR 93
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 52/93 (55%), Positives = 71/93 (76%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRS 103
AA++AC+D P I+GR+AN NLA LGA+ PRS
Sbjct: 86 AAAERACKDPNPNIDGRKANVNLAYLGAK-PRS 117
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 50/88 (56%), Positives = 70/88 (79%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA+ PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PR 93
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 49/89 (55%), Positives = 70/89 (78%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DT TK+FVGGL + T + L E+F+++GDI EAV+I+D+ T +S+GYGFVT K+ +A+
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 75 KACEDATPIINGRRANCNLASLGARRPRS 103
+AC+D PII+GR+AN NLA LGA+ PR+
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLGAK-PRT 118
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 49/89 (55%), Positives = 70/89 (78%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DT TK+FVGGL + T + L E+F+++GDI EAV+I+D+ T +S+GYGFVT K+ +A+
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 75 KACEDATPIINGRRANCNLASLGARRPRS 103
+AC+D PII+GR+AN NLA LGA+ PR+
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLGAK-PRT 118
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 57/146 (39%), Positives = 86/146 (58%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DT +TK+FVG L W T + LR +F+++G +++A ++S+ GRSKGYGF+TF++ +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGS-N--VGPRSTSSAPANHVQWY 131
+A +++ PII+GR NCNLAS GA++ + P GS N + P AP HV Y
Sbjct: 68 RALQNSKPIIDGRTTNCNLASAGAKQNMNH---PNLNGSFNYVIPPHQYQQAP-QHVIPY 123
Query: 132 YPAGTPATPFHHHQHHQAVPFYGYSP 157
P P T +H Q + Y +P
Sbjct: 124 CP---PHT--WNHVWGQYIYMYNNNP 144
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK++VGGL W T +E L F ++G+I+ ++ D+ T RS+GYGFVTFK+ E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 75 KACEDATPIINGRRANCNLASLGAR-RP-RSASATPPQ 110
+AC+D P I GR NC LA +GA+ +P +S + PQ
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQ 106
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 215 (80.7 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 57/147 (38%), Positives = 74/147 (50%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D T K+FV GL WET RE L F+ YG+I E ++ DK TG++KG+GFV FK + AK
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATP-P---QQGS--NVGPRSTSSAPANHV 128
+A ++ I R A C LAS+G P P GS N G HV
Sbjct: 160 EALKEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHV 219
Query: 129 QWYYPAGTPATPFH-HHQHHQAVPFYG 154
+ G A+PF +Q+H P YG
Sbjct: 220 --FNGGGMAASPFMLGNQYH---PLYG 241
Score = 39 (18.8 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 14/40 (35%), Positives = 14/40 (35%)
Query: 160 IATDVSYNQPKLSYTGGSYVNGH-FPQMYPGQPIVGATNT 198
I D S LS G SY G P YP G T
Sbjct: 287 IGVDPSVGAAGLSALG-SYFRGQSLPSTYPDSDAGGKRGT 325
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 41/81 (50%), Positives = 57/81 (70%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
TK++V GL W T E L +F+++G+I+ A ++ D T RSKG+GFVTF+E E+A +ACE
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 79 DATPIINGRRANCNLASLGAR 99
+ I+GR NC LA LGAR
Sbjct: 69 NPNHTIDGRTVNCKLAYLGAR 89
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 190 (71.9 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 33/80 (41%), Positives = 55/80 (68%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
++ L K+F+GG++W+T E LR++F YGD++EAVI+ D+ TGR++G+GF+ F +P ++
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 75 KACEDATPIINGRRANCNLA 94
+ D II+GR A
Sbjct: 62 RVIMDKH-IIDGRTVEAKKA 80
Score = 144 (55.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL E + +FD++G I + V++ D T R +G+GF+TF +A +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPAGTPAT 139
+NG+ A P S +P G N G S + PAN Y+ P
Sbjct: 171 TFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGS-NRMPANS---YFNNFAPGP 226
Query: 140 PFHH 143
F++
Sbjct: 227 GFYN 230
Score = 45 (20.9 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 153 YGYSPTCIATDVSYNQPKLSYTGGSYVNGH 182
YGY + +D S N P+ +Y G SY G+
Sbjct: 412 YGYDIDNVGSDPSANDPE-TYNG-SYNVGN 439
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 42/88 (47%), Positives = 59/88 (67%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+ VT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITXXXXXXXXXVAKVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA+ PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK-PR 93
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 181 (68.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D + K+F+ GLA +T E LR F YGD+ EA++I DK+TG+SKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 75 KACEDATPIINGRRANCNLASLG 97
A ++ + I+GR LA+ G
Sbjct: 131 LALKEPSKKIDGRVTVTQLAASG 153
Score = 168 (64.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
Q D ++ K++V + ++ P + L HF YGD+ E + DK+TG+S+G+ +K E
Sbjct: 160 QIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAE 219
Query: 72 AAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
A+ A D +I+G+ NC LA G + + GS G
Sbjct: 220 GAQAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHG 264
Score = 39 (18.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 145 QHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNG 181
QHHQAV G SP P++ + GG Y NG
Sbjct: 378 QHHQAV---GTSPV----------PRVPH-GGMYPNG 400
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 199 (75.1 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 48/157 (30%), Positives = 79/157 (50%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D+ K+FVGG++WET + LREHF YG++ +A+++ DKLTGR +G+GFV F +P
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+ ++ I + R + A +R + S + G+ RS+ N + +
Sbjct: 62 RVLQEKHSI-DTREVDVKRAM--SREEQQVSG---RTGNLNTSRSSGGDAYNKTKKIFVG 115
Query: 135 GTPATPFHHHQHHQAVPFYG-YSPTCIATDVSYNQPK 170
G P T + Q YG + I D + N+P+
Sbjct: 116 GLPPT-LTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 36/139 (25%), Positives = 60/139 (43%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL E R++F+ YG + + I+ D+ T R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPA-NHVQWYYPAGTPA 138
++G++ A P+ A+ P G ++G + + Y +
Sbjct: 171 TFHDLSGKQVEVKRAL-----PKDAN--PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS 223
Query: 139 TPFHHHQH-HQAVPFYGYS 156
F HQ +P YG S
Sbjct: 224 NRFLQHQSVGNGLPSYGSS 242
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 197 (74.4 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 40/109 (36%), Positives = 61/109 (55%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS SS
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDSS 110
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 37/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R ++ + P Q GS V P + + P Q Y
Sbjct: 174 HFHDIMGKKVEVKRAE--PRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 231
Query: 133 PAG 135
P G
Sbjct: 232 PQG 234
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 197 (74.4 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 40/109 (36%), Positives = 61/109 (55%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS SS
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDSS 110
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 37/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R ++ + P Q GS V P + + P Q Y
Sbjct: 174 HFHDIMGKKVEVKRAE--PRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 231
Query: 133 PAG 135
P G
Sbjct: 232 PQG 234
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 197 (74.4 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GG++W+T E L+E+F KYGD++EAVI+ D+ TGR++G+GF+ F +P A++
Sbjct: 14 LGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Query: 78 EDATPIINGRRANCNLA 94
D II+GR A
Sbjct: 74 MDKH-IIDGRTVEAKKA 89
Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 30/106 (28%), Positives = 48/106 (45%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G G K+FVGGL + +FD++G I + V++ D T R +G+GF+TF
Sbjct: 114 GNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSE 173
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
E+ +NG+ A P+ S+T P + +G
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVKRAV-----PKELSSTTPNRSPLIG 214
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 194 (73.4 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T E+LR++F +YGDI EA+++ D T RS+G+GFVTF +P + K
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
T ++G++ + +A P+ + T
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTRT 117
Score = 155 (59.6 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G I +A+++ DK T R +G+GFVTF+ + K
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 175 VCEIHFHEINNKMVECKKA 193
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 194 (73.4 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/109 (35%), Positives = 61/109 (55%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS +S
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDNS 110
Score = 133 (51.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R +S + P Q GS V P + + P Q Y
Sbjct: 174 HFHDIMGKKVEVKRAE--PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
Query: 133 PAG 135
P G
Sbjct: 232 PQG 234
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 194 (73.4 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/109 (35%), Positives = 61/109 (55%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS +S
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDNS 110
Score = 133 (51.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R +S + P Q GS V P + + P Q Y
Sbjct: 174 HFHDIMGKKVEVKRAE--PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
Query: 133 PAG 135
P G
Sbjct: 232 PQG 234
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 194 (73.4 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/109 (35%), Positives = 61/109 (55%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS +S
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDNS 110
Score = 133 (51.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R +S + P Q GS V P + + P Q Y
Sbjct: 174 HFHDIMGKKVEVKRAE--PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
Query: 133 PAG 135
P G
Sbjct: 232 PQG 234
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 38/103 (36%), Positives = 59/103 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS +S
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDNS 100
Score = 133 (51.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R +S + P Q GS V P + + P Q Y
Sbjct: 164 HFHDIMGKKVEVKRAE--PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 221
Query: 133 PAG 135
P G
Sbjct: 222 PQG 224
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 178 (67.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 34/97 (35%), Positives = 60/97 (61%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G D K+FVGGL+W+T + L+E+F+ +G + + +I+ D +T RS+G+GF+TF+EP
Sbjct: 195 GSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEP 254
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRSASAT 107
+K + ++G++ + A+ RPR A+ T
Sbjct: 255 CTVEKVLKVPIHTLDGKKIDPKHAT-PKNRPRQANKT 290
Score = 148 (57.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG++ +T E ++ +F ++G + E V++ D+ T R +G+GFVTF+ + + CE
Sbjct: 292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEI 351
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQ 111
I ++ C A +P+ A TP Q
Sbjct: 352 HFHTIKNKKVECKKA-----QPKEA-VTPAAQ 377
Score = 45 (20.9 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 117 PRSTSSAPANHVQWYYPAGTPATPFHHHQHHQ 148
P S ++A A +Q + A + A HHHQ Q
Sbjct: 483 PASAATANAALMQ-AHQAQSVAAAAHHHQQQQ 513
Score = 43 (20.2 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 18/71 (25%), Positives = 25/71 (35%)
Query: 180 NGHFPQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVPAIISKP 239
N Q + Q + A + H HQ QT AH+ + +S P
Sbjct: 490 NAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHN--AHV--AAAQQQQQSHHNAVSNP 545
Query: 240 ASIAPNTGALA 250
AS A + A A
Sbjct: 546 ASQAHSAAAAA 556
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 190 (71.9 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 40/109 (36%), Positives = 61/109 (55%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G GPRS SS
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWK-GPRSDSS 109
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 37/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 172
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R ++ + P Q GS V P + + P Q Y
Sbjct: 173 HFHDIMGKKVEVKRAE--PRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 230
Query: 133 PAG 135
P G
Sbjct: 231 PQG 233
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+FVGGL+W T +L++ F +G++ EA +I+D+ TGRS+G+GFV+F ++A A +
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 79 DAT-PIINGRRANCNLASLGARRPRSA 104
+ +NGR+ NLA+ + PRS+
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 35/93 (37%), Positives = 54/93 (58%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ F+GGLAW T LR+ F+KYG ++EA ++ DK +GRS+G+GF+TF E KKA ++
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDE----KKAMDE 63
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQG 112
A +NG + ++ +P A G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDG 96
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
GD + FVGGLAW T AL F +YGD++++ II+D+ TGRS+G+GFVTFK+ +A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 74 KKACEDAT-PIINGRRANCNLA 94
K A E ++GR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 181 (68.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 36/103 (34%), Positives = 58/103 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + + +P T P++G G RS ++
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPER---TRPKEGWQKGSRSDNN 100
Score = 139 (54.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 38/123 (30%), Positives = 59/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R +S + PP Q GS + P + + P Q Y
Sbjct: 164 HFHDIMGKKVEVKRAE--PRDSKSQTPGPPGASQWGSRIMPSAANGWAGQPPPTWQQGYG 221
Query: 133 PAG 135
P G
Sbjct: 222 PQG 224
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/101 (37%), Positives = 63/101 (62%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T E L+ F ++GD++++ II+D+ +GRS+G+GFVTFK+ +A + A E+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 80 ATPIINGRRANCNLASLGARRPR-SASATPPQQGSNVGPRS 119
+NG+ + + ++ + R S + GS G RS
Sbjct: 67 ----MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRS 103
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 181 (68.8 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 41/104 (39%), Positives = 57/104 (54%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D K+FV GL W+T E L E F +YG+I + + DK++G+SKGYGF+ +K A+
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 75 KACEDATPIINGRRANCNLASLG---ARRPRSASA-TPPQQGSN 114
A + I R C LAS G P +A+A + P Q SN
Sbjct: 196 NALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSN 239
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T K++V + E + L F K+G+I E + DK TGR KG+ +K E+AK+A
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 77 CEDATPIINGRRANCNLASLGAR 99
E+ G +C A G +
Sbjct: 303 LEEPHKTFEGHILHCQKAIDGPK 325
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 80 ATPIINGR 87
+NG+
Sbjct: 62 KEHKLNGK 69
Score = 136 (52.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 80 ATPIINGR 87
+NG+
Sbjct: 139 KEHKLNGK 146
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++ + I D TGRS+G+GF+ FKEP + +K E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 80 ATPIINGR 87
++GR
Sbjct: 61 KEHRLDGR 68
Score = 130 (50.8 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D T + +G+ F+TFKE + KK E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 79 DATPIINGRRANCNLA 94
++G + +A
Sbjct: 144 KKFHNVSGSKCEIKVA 159
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGL W T ++L+ F KYGD++++ II+D+ TGRS+G+GFVTF EA ++A E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 67 MNGQDLDGRNITVNEA 82
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 176 (67.0 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 54 LRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 113
Query: 78 EDATPIINGRRANCNLASLGARRPRSAS 105
++GR N + G R S S
Sbjct: 114 ASRPHTLDGR--NIDPKQKGPRSDNSKS 139
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 42/120 (35%), Positives = 59/120 (49%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 200
Query: 80 ATPIINGRRANCNLASLGARRPR-SASATPPQQG-SNVGPRSTSSAPANHVQWYYPAGTP 137
I G++ A PR S S P Q G S G R +A AN W AG P
Sbjct: 201 HFHDIMGKKVEVKRAE-----PRDSKSQAPGQPGASQWGSRVVPNA-ANG--W---AGQP 249
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGR 87
++GR
Sbjct: 65 GTVLASRPHTLDGR 78
Score = 133 (51.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 151
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPP---QQGSNVGPRSTSS----APANHVQWYY 132
I G++ A R +S + P Q GS V P + + P Q Y
Sbjct: 152 HFHDIMGKKVEVKRAE--PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 209
Query: 133 PAG 135
P G
Sbjct: 210 PQG 212
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
TK+F+GGL+W T +LR+ F +GD+++A +I D+ TGRS+G+GFV F + AA A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 79 DAT-PIINGRRANCNLASLGARRPRS 103
+ +NGR N A+ PR+
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPRA 120
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 179 (68.1 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 52/153 (33%), Positives = 68/153 (44%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D +FV G W+T +E L+ F+ YG+I E ++ DK TGR KGYGFV FK + A+
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+A + + R CNLAS +P A V T A N + P
Sbjct: 464 EALKRPEKRMYNRIVVCNLAS---EKPGKAGKEQ-DMAEPVNIDLTKMA--NQSEAVLPG 517
Query: 135 -----GTPATPFHHHQHH------QAVPFYGYS 156
G HH Q Q +PFYGYS
Sbjct: 518 IELGRGHVLEKMHHQQQQTMDMFGQNMPFYGYS 550
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 177 (67.4 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+GD+++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 ATPIINGR 87
+NG+
Sbjct: 156 KEHKLNGK 163
Score = 136 (52.9 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 169 (64.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 32/86 (37%), Positives = 56/86 (65%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+WET +E L +F ++GDI++ V++ + +GRS+G+GFVTF +P ++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 80 ATPIINGRRAN---CNLASLGARRPR 102
++GR + CN +L ++P+
Sbjct: 68 GPHTLDGRTIDPKPCNPRTL--QKPK 91
Score = 128 (50.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
KVF+GGL LR F++YG + E VI+ D+ +S+G+GF++F+E + + +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
+NG++ A PR S S VG
Sbjct: 157 RYINLNGKQVEIKKAE-----PRDGSGGQNSNNSTVG 188
Score = 48 (22.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 25/100 (25%), Positives = 35/100 (35%)
Query: 107 TPPQQGSNVGPRSTSSAPANHVQWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSY 166
+P QQ G +S P ++ W P G P + GY + S
Sbjct: 242 SPQQQQYGYG----NSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTST 297
Query: 167 NQPKLSYTGGSYVNGHFP--QMYP-GQPIVGATNTLMPIY 203
P GGS+ + + P P G P GA T +Y
Sbjct: 298 GAPSGPSGGGSWNSWNMPPNSAGPTGAPGAGA-GTATDMY 336
Score = 41 (19.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 101 PRSASATPPQQGSNVGPRSTSSAPANHVQWYYPAGTPATP 140
P PPQ + GP+ T + G P+ P
Sbjct: 264 PPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGP 303
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 169 (64.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 51/183 (27%), Positives = 82/183 (44%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 38 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 97
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 98 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 152
Query: 134 AGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQPIV 193
G AT + + P Y Y I +Y + + V G + P
Sbjct: 153 -GFQATTYASRSYTGLAPGYTYQFPAIPL-TAYGPMAAAAAAAAVVRGTGSHPWTMAPPP 210
Query: 194 GAT 196
G+T
Sbjct: 211 GST 213
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FV L W REAL++HF KYG I + ++ DK+T RS+G+GFVTF + ++ +KA E
Sbjct: 4 KIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAME- 62
Query: 80 ATPIINGRR 88
A + GR+
Sbjct: 63 AENEMGGRK 71
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 26/67 (38%), Positives = 48/67 (71%)
Query: 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80
+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 81 TPIINGR 87
+NG+
Sbjct: 61 EHKLNGK 67
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 174 (66.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 35/115 (30%), Positives = 66/115 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+NG+ + +R ++ P + VG S + P ++ Y+ A
Sbjct: 61 KEHKLNGK-------VIDPKRAKAMKTKEPVKKIFVGGLSPDT-PEEKIREYFGA 107
Score = 137 (53.3 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+GD+++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 80 ATPIINGR 87
+NG+
Sbjct: 137 KEHKLNGK 144
Score = 136 (52.9 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL +ET E+L + F KYG + E V++ D+ + RS+G+GFVTF+ PE AK D
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 48/120 (40%), Positives = 69/120 (57%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
Q + T T VFVG L+W + L + F++YG I+ A +I D +GRSKGYG+V F+ PE
Sbjct: 257 QDSNETCT-VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Query: 72 AAKKA-CEDATPIINGRRANCNLASLGARRPRSASATP--PQQGSNVGPRSTSSAPANHV 128
AAK A + T I+GR N +L++ PR A+ P Q+ N G + S P++ V
Sbjct: 316 AAKAAVAANGTKEIDGRMVNLDLSN-----PRPANPQPYAQQRAGNFGDQL--SEPSDTV 368
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 30/80 (37%), Positives = 41/80 (51%)
Query: 11 GQFGDTTLTK---VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTF 67
G FGD VFVG L++ + L F GDI + +D +GR KG+G+VTF
Sbjct: 355 GNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Query: 68 KEPEAAKKACEDATPIINGR 87
+ ++AKK E I GR
Sbjct: 415 SDIDSAKKCVEMNGHFIAGR 434
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 177 (67.4 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+GD+++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 ATPIINGR 87
+NG+
Sbjct: 156 KEHKLNGK 163
Score = 136 (52.9 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 177 (67.4 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+GD+++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 ATPIINGR 87
+NG+
Sbjct: 156 KEHKLNGK 163
Score = 136 (52.9 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTF-KEPEA 72
+ K+F+GGLAW T + LRE F +YG I EAV++ D+ T RS+G+GFV F EPEA
Sbjct: 1 MAKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEA 56
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D+ T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + A AR R +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGA 93
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 173 (66.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 80 ATPIINGR 87
+NG+
Sbjct: 91 KEHKLNGK 98
Score = 136 (52.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 37/100 (37%), Positives = 54/100 (54%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T AL +HF +G I E V++ D+ T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
++GR+ + A AR R + ++G PR
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGYERGRGY-PR 105
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D+ T RS+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + A AR R +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGA 93
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ++T E+L + F KYG I E V++ D+ T RS+G+GFVTF+ P+ AK A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 80 AT-PIINGRRANCNLA--SLGARR 100
++GR+ + A S G RR
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRR 89
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D+ T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + A AR R +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGA 93
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D+ T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + A AR R +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGA 93
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+++T ++L E F KYG I + +I D+ T RS+G+GFVTF+ PE AK D
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK----D 79
Query: 80 ATPIINGRRAN 90
A +NG++ +
Sbjct: 80 AMAAMNGKQVD 90
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 169 (64.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K F+GGL+W+T EAL HF KYG+I++ I+ D TGRS+G+GF+TF++ ++ +D
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 80 ATPIINGR 87
+++G+
Sbjct: 223 RH-VLDGK 229
Score = 132 (51.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ E F ++G I++ ++ DK TGRS+G+GFVT+ P A K C +
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 80 ATPIINGR 87
+ G+
Sbjct: 307 KYLTLKGK 314
Score = 46 (21.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 168 QPKLSYTGGSYVNGHFPQMYPGQPIVGATNTLMPIYPLYHFHQSQ 212
Q + Y GSY G F QM PG + M Y + + Q+Q
Sbjct: 349 QQQAMYPYGSY--G-FQQMNPGAMNPAMSQEYMRYYQWFMYQQAQ 390
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 176 (67.0 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 38/112 (33%), Positives = 62/112 (55%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
Q GD + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 4 QGGDE-IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 72 AAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQG-SNVGPRSTSS 122
++GR + + +P + P++G PR+ +S
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSR---PREGWQQKEPRTENS 111
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ L+E+F+++G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 80 ATPIINGRRANCNLASLGARRPR-SASATPPQQGSNV-GPRSTSSAPAN 126
I G++ A PR S S TP GSN G R+ S AN
Sbjct: 175 HFHDIMGKKVEVKRAE-----PRDSKSQTPGPPGSNQWGSRAMQST-AN 217
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 31/53 (58%), Positives = 43/53 (81%)
Query: 50 IISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASLGARRPR 102
+I+D+ TG+S+GYGFVT + AA++AC+D PII+GR+AN NLA LGA+ PR
Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK-PR 52
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 172 (65.6 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++ + I D TGRS+G+GF+ FKEP + +K E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 80 ATPIINGR 87
++GR
Sbjct: 61 KEHRLDGR 68
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 47/180 (26%), Positives = 76/180 (42%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D T + +G+ F+TFKE + KK E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 79 DATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQW------YY 132
++G + +A + ++ +GS G A W Y+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRGGAQSQNWNQGYGNYW 203
Query: 133 PAGTPATPFHHHQ--------HHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFP 184
G + + Q + +YGY P + S N K GG + N + P
Sbjct: 204 NQGYGNQGYGYQQGYGGYGGYDYSGYGYYGYGPGYDYSQGSANYGKTPRRGG-HQNNYKP 262
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 26/57 (45%), Positives = 44/57 (77%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
+K+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GFVTF +P + K
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D+ T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPR 102
++GR+ + A AR R
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTR 90
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 26/56 (46%), Positives = 43/56 (76%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
K+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GFVTF +P + K
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + + A AR R +
Sbjct: 67 TNGESLDGRQIHVDHAGKSARGTRGGA 93
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 174 (66.3 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 29/68 (42%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ + D LTGRS+G+GFV FKE E+ +K
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 80 ATPIINGR 87
+NG+
Sbjct: 115 KEHKLNGK 122
Score = 144 (55.7 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+FD YG++ + + T + +G+ F+TFKE E KK E
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 173 (66.0 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 80 ATPIINGR 87
+NG+
Sbjct: 106 KEHKLNGK 113
Score = 136 (52.9 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 176 (67.0 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GG++W+T E L+E+F +G+++EAVI+ D+ TGR++G+GFV F +P A+ +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 80 ATPIINGRRANCNLA-SLGARRPRSASATPPQQGSNVGPRST 120
I +GR A + + S + QGS GP T
Sbjct: 67 KHNI-DGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT 107
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 46/189 (24%), Positives = 77/189 (40%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + +F+++G + V++ D T R +G+GF+T+ EA +K
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPAGTPAT 139
+NG+ A P S +P G + G ++ + Q + PA
Sbjct: 169 TFHELNGKMVEVKRAVPKELSP-GPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGY 227
Query: 140 PFHHHQHHQAVP-----FYGYSPTCIATDVSYNQP-KLSYTGGSYVNGHFPQMYPGQPI- 192
V F YS + +V+++Q +TGG+ NG+ P
Sbjct: 228 GLRMDGRFSPVGAGRSGFANYS-SGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYY 286
Query: 193 VGATNTLMP 201
+G TN P
Sbjct: 287 IGNTNRFGP 295
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 175 (66.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
GD + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 7 GDE-IGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCV 65
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGS 113
+ + ++GR + + +P +GS
Sbjct: 66 RTVLDTKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGS 105
Score = 148 (57.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 56/184 (30%), Positives = 81/184 (44%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ LR++F+++G + E V+I D R +G+GF+TF+ ++ +A
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNM 173
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQ-GSNV-GPRSTSSAPANHVQWYYPAGTP 137
I G++ A PR + A P Q G+N GPR+ SA AN W A P
Sbjct: 174 HFHDIMGKKVEVKKAE-----PRDSKAPAPGQLGANQWGPRAIISA-ANG--W---AAQP 222
Query: 138 ATPFHHHQHHQAV------PFYGYSPTCIA---TDVSYNQPKLSYTGGSYVNGHF--PQM 186
A + Q V P GY P A P ++ + G F PQ
Sbjct: 223 APTWQQSYGPQGVWVSTGQPLAGYGPPLPAGRGAPAQAPSPFNAFLVAAPPTGGFGAPQG 282
Query: 187 YPGQ 190
YP Q
Sbjct: 283 YPQQ 286
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + T +AL +HF +G I E V++ D+ T RS+G+GF+TF PE A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 80 AT-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + A AR R +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGA 93
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 173 (66.0 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 136 (52.9 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 172 (65.6 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+FVGG+++ T LRE F KYG++++A II D+ TGRS+G+ FVTF E A A +
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 79 DATPIINGRRANCNLAS 95
++GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 174 (66.3 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 12 QFGD-TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
Q GD + K+F+GGL +T +HF KYG+I ++VI+ D+ TG+ +G+GF+TF +P
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 71 EAAKKACEDATPIINGRR 88
K ED T +ING++
Sbjct: 71 SVVDKVIED-THVINGKQ 87
Score = 152 (58.6 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 54/198 (27%), Positives = 87/198 (43%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
Q D K+FVGG+ + L++ F KYG+++E +I D T RS+G+GFV F E
Sbjct: 102 QSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Query: 72 AAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWY 131
+ I A+ + A +S + +PP GS+ RS++ + A++ Y
Sbjct: 162 VVDELLSKGNMI---DMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPY 218
Query: 132 --YPAGT--PATPFHHH--QHHQAVPFYGYSPTCIATDVS--YNQPKLSYTGGSYVNGHF 183
+ G P P H + YGY + + YN +Y GGS + G
Sbjct: 219 GGFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYN----NYGGGS-LGG-- 271
Query: 184 PQMYPGQPIVGATNTLMP 201
Y +P +G ++ P
Sbjct: 272 ---YRNEPPLGYSSRFGP 286
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 59/177 (33%), Positives = 81/177 (45%)
Query: 53 DKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQG 112
D+ G+S+GYGFVT + AA++AC+D PII+GR+AN NLA LGA+ PRS Q G
Sbjct: 2 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRSI-----QTG 55
Query: 113 SNVGPRSTSSA----PANHVQWY-YPAGT--PATPFHHHQHHQAVPFYGYSPTCIA---- 161
+G + A P Y YP P+ A P+ Y+ A
Sbjct: 56 FTIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQY 115
Query: 162 TDVSYNQ-PKLSYTGGSYVN-GHFPQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGL 216
T +Y+Q P + +V G+ + P PI +T P P F Q Q L
Sbjct: 116 TTAAYDQYPYAASPAAGFVGYGYTGAVQP--PITAST----PAAPATAFVQYQPQQL 166
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 59/177 (33%), Positives = 81/177 (45%)
Query: 53 DKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQG 112
D+ G+S+GYGFVT + AA++AC+D PII+GR+AN NLA LGA+ PRS Q G
Sbjct: 1 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRSI-----QTG 54
Query: 113 SNVGPRSTSSA----PANHVQWY-YPAGT--PATPFHHHQHHQAVPFYGYSPTCIA---- 161
+G + A P Y YP P+ A P+ Y+ A
Sbjct: 55 FTIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQY 114
Query: 162 TDVSYNQ-PKLSYTGGSYVN-GHFPQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGL 216
T +Y+Q P + +V G+ + P PI +T P P F Q Q L
Sbjct: 115 TTAAYDQYPYAASPAAGFVGYGYTGAVQP--PITAST----PAAPATAFVQYQPQQL 165
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 162 (62.1 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 26/56 (46%), Positives = 43/56 (76%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
K+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GFVTF +P + K
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77
Score = 161 (61.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 65/235 (27%), Positives = 103/235 (43%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG-PRSTSSAPANHVQWYYPA 134
CE IN + C A +P+ P +G G P + + YP
Sbjct: 167 VCEIHFHEINNKMVECKKA-----QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYP- 220
Query: 135 GTPATPFHHHQHHQAVPFYGYS-PTCIATDVS-YNQPKLSYTGGSYVNGHFPQMYPGQPI 192
AT + + P YGY P A ++ GS +N + Q G P
Sbjct: 221 NFVAT--YGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPA 278
Query: 193 VGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVPAIISKPASIAPNTG 247
A + P P F + + G A ++ P A + V IS AS P +G
Sbjct: 279 SPAGSN--PARP-GGFPGANSPGPVADLYGP--ASQDSGVGNYISA-ASPQPGSG 327
Score = 47 (21.6 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 22/81 (27%), Positives = 30/81 (37%)
Query: 171 LSYTGGSYVNGHFPQMYPGQPIVGATNTLMPIY-PLYHFHQSQTMGLPAHIFPPTTAGHM 229
L YT +++ G YP V P + P Y + Q G PA + P A +
Sbjct: 203 LPYTMDAFMLGMGMLGYPN--FVATYGRGYPGFAPSYGY---QFPGFPAAAYGPVAAAAV 257
Query: 230 TTVPAIISKPASIAPNTGALA 250
+ S PN GA A
Sbjct: 258 AAARGSVLNSYSAQPNFGAPA 278
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 169 (64.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/114 (29%), Positives = 65/114 (57%)
Query: 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80
+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 81 TPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+NG+ + +R ++ P + VG S + P ++ Y+ A
Sbjct: 61 EHKLNGK-------VIDPKRAKAMKTKEPVKKIFVGGLSPDT-PEEKIREYFGA 106
Score = 137 (53.3 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T +AL + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T +AL + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T +AL + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 136 (52.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 136 (52.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 136 (52.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 136 (52.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
+L K+FV L W +EAL+ HF ++G+I + ++ D++T RSKG+GFV F+ E+ + A
Sbjct: 2 SLNKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNA 61
Query: 77 CEDATPIINGRRANCNLA 94
I NGR+ N A
Sbjct: 62 INSDNEI-NGRKLVVNEA 78
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGS 113
A +NG+ + L +R P S PP S
Sbjct: 63 AMMAMNGK---VRIRVL-SRSPVSRMGHPPANPS 92
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K++VG L+++ + L+ F +YG+I EA +I D+ TGRSKG+ F+T+ +AA++A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 80 ATPI-INGRRANCNLA--SLGARR 100
A I + GR+ N+A + G RR
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRR 102
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K++VG L+++ + L+ F +YG+I EA +I D+ TGRSKG+ F+T+ +AA++A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 80 ATPI-INGRRANCNLA--SLGARR 100
A I + GR+ N+A + G RR
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRR 102
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 172 (65.6 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G+ K+FVGGL+W+T ++ L+++F K+G++ + I D TGRS+G+GF+ FKEP
Sbjct: 90 GEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGV 149
Query: 74 KKACEDATPIINGRRANCNLASLGARRP 101
K ++GR+ + A + P
Sbjct: 150 DKVLAQKEHRLDGRQIDPKKAMAMKKEP 177
Score = 131 (51.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL ET E +RE+F +G+I + D + + +G+ F+TFKE EA KK E
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 80 ATPIINGRR 88
++G +
Sbjct: 240 KYHNVSGTK 248
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+F+GGL++ T + L E F K G ++EA I+ D+++ RSKG+GFVTF + A+KA
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 79 DAT-PIINGRRANCNLA----SLGARRPRSASATPPQQGSNVGPRSTSSAPAN 126
+ +NGR + A SLG + PP R+T ++ ++
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDPAVIAATRTTETSKSD 146
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 170 (64.9 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 44/142 (30%), Positives = 70/142 (49%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++FD++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK 165
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G + V P + YP
Sbjct: 166 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSSRGRARVMPYGMDAFMLGIGMLGYP 220
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 221 -GFQATTYAGRSYTSLTPGYTY 241
Score = 155 (59.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 27/88 (30%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E L+++F K+G++ E++++ D +T RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
++ + + +A +P+ + T
Sbjct: 81 TRHELDSKTIDPKVAFPRRAQPKLVTRT 108
Score = 43 (20.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 108 PPQQGSNVGPRS-TSSAPANHVQW--YYPAGTPATPFHHHQHHQAVPFYGYSPTCIA 161
P Q + RS TS P Q+ ++ TP H A+P Y+P A
Sbjct: 220 PGFQATTYAGRSYTSLTPGYTYQFPEFHLERTPLLTSPHPPELTAIPLTAYNPMAAA 276
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 154 (59.3 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 154 (59.3 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 154 (59.3 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 154 (59.3 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 80 ATPIINGRRANCNLASLGARRPRS 103
+NG+ + L +PRS
Sbjct: 71 ----MNGKGVPSSTRFLQQFKPRS 90
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 161 (61.7 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 65/235 (27%), Positives = 103/235 (43%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 85 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 144
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG-PRSTSSAPANHVQWYYPA 134
CE IN + C A +P+ P +G G P + + YP
Sbjct: 145 VCEIHFHEINNKMVECKKA-----QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYP- 198
Query: 135 GTPATPFHHHQHHQAVPFYGYS-PTCIATDVS-YNQPKLSYTGGSYVNGHFPQMYPGQPI 192
AT + + P YGY P A ++ GS +N + Q G P
Sbjct: 199 NFVAT--YGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPA 256
Query: 193 VGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVPAIISKPASIAPNTG 247
A + P P F + + G A ++ P A + V IS AS P +G
Sbjct: 257 SPAGSN--PARP-GGFPGANSPGPVADLYGP--ASQDSGVGNYISA-ASPQPGSG 305
Score = 157 (60.3 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 25/55 (45%), Positives = 42/55 (76%)
Query: 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GFVTF +P + K
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 55
Score = 47 (21.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 22/81 (27%), Positives = 30/81 (37%)
Query: 171 LSYTGGSYVNGHFPQMYPGQPIVGATNTLMPIY-PLYHFHQSQTMGLPAHIFPPTTAGHM 229
L YT +++ G YP V P + P Y + Q G PA + P A +
Sbjct: 181 LPYTMDAFMLGMGMLGYPN--FVATYGRGYPGFAPSYGY---QFPGFPAAAYGPVAAAAV 235
Query: 230 TTVPAIISKPASIAPNTGALA 250
+ S PN GA A
Sbjct: 236 AAARGSVLNSYSAQPNFGAPA 256
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 171 (65.3 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D K+FV GL W+T ++L + F +YG+I + + DK++G+SKGYGF+ FK A+
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 75 KACEDATPIINGRRANCNLASLG 97
A + I R C LAS+G
Sbjct: 184 NALKQPQKKIGTRMTACQLASIG 206
Score = 123 (48.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K++V ++ + + L E F ++G+I E + DK TGR KG+ ++ E+AKKA E+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 80 ATPIINGRRANCNLASLGARR 100
G +C+ A+ G ++
Sbjct: 288 PHKTFEGHVLHCHKANDGPKQ 308
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 153 (58.9 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 35/84 (41%), Positives = 51/84 (60%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL +ET + L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 80 AT-PIINGRRANCNLA--SLGARR 100
++GR+ + A S G RR
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERR 89
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 153 (58.9 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T + L F KYG I E V++ D+ T RS+G+GFVTF+ E AK A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 80 AT-PIINGRRANCNLA 94
++GR+ + A
Sbjct: 67 MNGKTVDGRQIRVDQA 82
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 169 (64.5 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 28/71 (39%), Positives = 51/71 (71%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG++WET E +F K+G+++++VI++D++TG +G+GFVTF + A+K E+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 80 ATPIINGRRAN 90
+I+ R+ +
Sbjct: 127 -DHVIDDRKVD 136
Score = 129 (50.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + L+ +F YGDI+E I+ D TGRS+G+GFVTF+ ++ + D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 169 (64.5 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 48/151 (31%), Positives = 72/151 (47%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D++ +FV GL W+T E L+ F+ YG+I E ++ DK TGR+KG+GFV FK + A+
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
A ++ + R +C L AR P ++ QQ + S N + P
Sbjct: 219 AALKNPEKRMYNRTVSC----LPAR-PFNSGKPREQQQPVESVKIDLSHTGNQSEMALPG 273
Query: 135 ---GTPATPFHHHQHH------QAVPFYGYS 156
G H Q + Q +PFYG+S
Sbjct: 274 IDLGHGLDKGHQQQQNMSMYAGQNMPFYGHS 304
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 167 (63.8 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 28/82 (34%), Positives = 53/82 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FKE ++ + +
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 80 ATPIINGRRANCNLASLGARRP 101
++GR+ + A + P
Sbjct: 106 KEHRLDGRQIDPKRAMAIKKEP 127
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL ET E +RE+F +G+I + +D T + +G+ F+TFKE A KK E
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 80 ATPIINGRRANCNLA 94
+ G + +A
Sbjct: 190 KYHNVCGSKCEIKIA 204
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 152 (58.6 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 24/56 (42%), Positives = 42/56 (75%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
K+F+GGL+W+T +E L+E+F K+G++ E +++ D +T RS+G+GFVT+ + K
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDK 78
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 164 (62.8 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 46 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG-PRSTSSAPANHVQWYYPA 134
CE IN + C A +P+ P +G G P + + YP
Sbjct: 106 VCEIHFHEINNKMVECKKA-----QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYP- 159
Query: 135 GTPATPFHHHQHHQAVPFYGYS-PTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQPIV 193
AT + + P YGY P A +Y + + +G P G P
Sbjct: 160 NFVAT--YGRGYPGFAPSYGYQFPGFPAA--AYGPVAAAAVAAARGSGSNPARPGGFP-- 213
Query: 194 GATNTLMPIYPLYHFHQSQTMGLPAHI 220
GA N+ P+ LY SQ G+ +I
Sbjct: 214 GA-NSPGPVADLYG-PASQDSGVGNYI 238
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 151 (58.2 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+ VGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGR 101
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 151 (58.2 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+ VGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGR 101
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 151 (58.2 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+ VGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGR 101
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 151 (58.2 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK---EPEAAKK 75
T+V+VG L+ T + LRE F YG++++A+++ D+ T RS+G+GFVT+ E EAA
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 76 ACEDATPIINGRRANCNLASLG 97
+ +NGRR + L +G
Sbjct: 63 GMDGKE--LNGRRVSVKLFGIG 82
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 169 (64.5 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 25/56 (44%), Positives = 44/56 (78%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
K+F+GGL WET ++LR++F+++G++L+ ++ D TGRS+G+GF+TFK P+ +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNE 219
Score = 130 (50.8 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ + E R F+++G +L+A ++ DK TGR +G+GFVT++ A +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 80 ATPIINGR 87
I+G+
Sbjct: 308 PYITIHGK 315
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 164 (62.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 59/207 (28%), Positives = 94/207 (45%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG-PRSTSSAPANHVQWYYPA 134
CE IN + C A +P+ P +G G P + + YP
Sbjct: 167 VCEIHFHEINNKMVECKKA-----QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYP- 220
Query: 135 GTPATPFHHHQHHQAVPFYGYS-PTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQPIV 193
AT + + P YGY P A +Y + + +G P G P
Sbjct: 221 NFVAT--YGRGYPGFAPSYGYQFPGFPAA--AYGPVAAAAVAAARGSGSNPARPGGFP-- 274
Query: 194 GATNTLMPIYPLYHFHQSQTMGLPAHI 220
GA N+ P+ LY SQ G+ +I
Sbjct: 275 GA-NSPGPVADLYG-PASQDSGVGNYI 299
Score = 162 (62.1 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 26/56 (46%), Positives = 43/56 (76%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
K+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GFVTF +P + K
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77
Score = 36 (17.7 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 19/71 (26%), Positives = 26/71 (36%)
Query: 171 LSYTGGSYVNGHFPQMYPGQPIVGATNTLMPIY-PLYHFHQSQTMGLPAHIFPPTTAGHM 229
L YT +++ G YP V P + P Y + Q G PA + P A +
Sbjct: 203 LPYTMDAFMLGMGMLGYPN--FVATYGRGYPGFAPSYGY---QFPGFPAAAYGPVAAAAV 257
Query: 230 TTVPAIISKPA 240
S PA
Sbjct: 258 AAARGSGSNPA 268
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 157 (60.3 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 107 TRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK 166
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
Score = 151 (58.2 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 27/88 (30%), Positives = 53/88 (60%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GF+TF + + K
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
++ + + +A +P+ + T
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRT 109
Score = 47 (21.6 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 95 SLGARRPRSAS---ATPPQQGSNV-GPRSTSSAPANHVQWYYPAGTPATPFHH 143
S GA PR A P +++ GP S SA N++ P P + F+H
Sbjct: 322 SSGANPPRPGGFPGANSPGPVADLYGPSSQDSAVGNYISAASPQ--PGSGFNH 372
Score = 36 (17.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 220 IFPPTTAGHMTTVP 233
+FPP T G ++P
Sbjct: 191 MFPPGTRGRARSLP 204
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 167 (63.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/168 (27%), Positives = 79/168 (47%)
Query: 14 GDTTLTK-VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEA 72
G T+ TK +FVGGL+ T E + +F+++G + V++ D +T R +G+GFVT+ ++
Sbjct: 114 GVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDS 173
Query: 73 AKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYY 132
+ + ++ +R A P+ + N+ P +S +V
Sbjct: 174 VEVVMQSNFHELSDKRVEVKRAI-----PKEGIQSNNGNAVNIPPSYSSFQATPYVPEQN 228
Query: 133 PAGT----PATPFHHHQHHQAVPF-YGYSPTCIATDVSYNQPKLSYTG 175
G P F +H + QAV + YGY T +VS+N P + TG
Sbjct: 229 GYGMVLQFPPPVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQPTG 276
Score = 159 (61.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+A ET EAL+++F +YG +LEAV+ +K+TG+ +G+GFV F KA D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 80 ATPIINGR 87
T I G+
Sbjct: 67 -THFILGK 73
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 166 (63.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 44/142 (30%), Positives = 70/142 (49%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 133 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 187
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 188 -GFQATTYASRSYTGLAPGYTY 208
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 166 (63.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 44/142 (30%), Positives = 70/142 (49%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 86 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 145
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 146 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 200
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 201 -GFQATTYASRSYTGLAPGYTY 221
Score = 164 (62.8 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVTRT 88
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+F+GG+A+ ++LRE F KYG++++ +I D+ TGRS+G+GFVTF EAA A +
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 79 --DATPIINGRRANCNLAS 95
D + +GR N A+
Sbjct: 100 ALDGRDL-HGRVVKVNYAN 117
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 166 (63.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 44/142 (30%), Positives = 70/142 (49%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 166 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 220
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 221 -GFQATTYASRSYTGLAPGYTY 241
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 165 (63.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T KVF+GGL+ + E ++++F+ YG + +A+++ DK T R +G+GFVTF E A K
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 76 ACEDATPIINGRRANCNLA 94
CE ING+ C A
Sbjct: 191 VCEIHFHEINGKMVECKKA 209
Score = 165 (63.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 27/84 (32%), Positives = 53/84 (63%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G G K+F+GGL+W+T E LR++F ++G++ E +++ D T R++G+GF+TF +P
Sbjct: 37 GSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
Query: 71 EAAKKACEDATPIINGRRANCNLA 94
+ K + ++G++ + +A
Sbjct: 97 SSVDKVLNNREHELDGKKIDPKVA 120
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 148 (57.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
++FV + W + AL+ HF K+G + + ++ D++T RSKG+GFVTF E+A+ A
Sbjct: 4 RIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAVNS 63
Query: 80 ATPIINGRRANCNLA 94
+ +GR+ NLA
Sbjct: 64 VHEM-DGRQLVVNLA 77
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 148 (57.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 78 EDATPIINGR 87
++GR
Sbjct: 73 NARPHKVDGR 82
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 148 (57.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 78 EDATPIINGR 87
++GR
Sbjct: 73 NARPHKVDGR 82
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 148 (57.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+++T ++L + F KYG I + ++ T RS+G+GFVTF+ P+ AK A E
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 80 AT-PIINGRRANCNLASLG 97
++GR + A G
Sbjct: 66 MNGKSVDGRTIRVDEAGKG 84
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 164 (62.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 44/142 (30%), Positives = 69/142 (48%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 133 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 187
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 188 -GFQATTYASRSYTGLAPGYTY 208
Score = 114 (45.2 bits), Expect = 0.00028, P = 0.00028
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 33 EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCN 92
E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K + ++ + +
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 93 LASLGARRPRSASAT 107
+A +P+ + T
Sbjct: 61 VAFPRRAQPKMVTRT 75
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 161 (61.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 80 ATPIINGR 87
++GR
Sbjct: 61 KEHRLDGR 68
Score = 132 (51.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + + +G+ F+TFKE E KK E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 79 DATPIINGRRANCNL 93
I+G + C L
Sbjct: 144 KKFHTISGSK-RCGL 157
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 164 (62.8 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+WET + LR+HF KYG+I + +D TGRS+G+ F+ F EA K
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 80 ATPIINGRRAN 90
IIN ++ +
Sbjct: 117 DEHIINSKKVD 127
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 162 (62.1 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 80 ATPIINGR 87
++GR
Sbjct: 136 KEHRLDGR 143
Score = 126 (49.4 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE + KK E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 79 DATPIINGRRANCNLA 94
++G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 162 (62.1 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 80 ATPIINGR 87
++GR
Sbjct: 136 KEHRLDGR 143
Score = 126 (49.4 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE + KK E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 79 DATPIINGRRANCNLA 94
++G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 147 (56.8 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQ-QGSNVGPRSTS-SAPANHVQWYYPA 134
+NG+ SL + + AT P + + PR S ++ YP+
Sbjct: 69 ----MNGK-------SLDGKAIKVEQATKPSFENVYLSPRDDGYSTKDSYSSRDYPS 114
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 44/142 (30%), Positives = 69/142 (48%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 166 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 220
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 221 -GFQATTYASRSYTGLAPGYTY 241
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 44/142 (30%), Positives = 69/142 (48%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 166 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 220
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 221 -GFQATTYASRSYTGLAPGYTY 241
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 44/142 (30%), Positives = 69/142 (48%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 166 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 220
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 221 -GFQATTYASRSYTGLAPGYTY 241
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 158 (60.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 43/142 (30%), Positives = 69/142 (48%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++ + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSA-SATPPQQG-SNVGPRSTSSAPANHVQWYYP 133
CE IN + C A +P+ S T +G S V P + YP
Sbjct: 166 VCEIHFHEINNKMVECKKA-----QPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYP 220
Query: 134 AGTPATPFHHHQHHQAVPFYGY 155
G AT + + P Y Y
Sbjct: 221 -GFQATTYASRSYTGLAPGYTY 241
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 163 (62.4 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++ + I D TGRS+G+GF+ FK+ E+ K E
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 80 ATPIINGR 87
++GR
Sbjct: 125 KEHRLDGR 132
Score = 128 (50.1 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKA 76
+ K+FVGGL E + +RE+F+ +G+I EA+ + D T + +G+ F+TFKE + KK
Sbjct: 147 IKKIFVGGLNPEAGEDQIREYFETFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKI 205
Query: 77 CEDATPIINGRRANCNLA 94
E ++G + +A
Sbjct: 206 LEKKFHNVSGSKCEIKIA 223
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 162 (62.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 80 ATPIINGR 87
++GR
Sbjct: 149 KEHRLDGR 156
Score = 126 (49.4 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE + KK E
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 79 DATPIINGRRANCNLA 94
++G + +A
Sbjct: 232 KKFHTVSGSKCEIKVA 247
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 161 (61.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 80 ATPIINGR 87
++GR
Sbjct: 131 KEHRLDGR 138
Score = 129 (50.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE E KK E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 79 DATPIINGRRANCNLA 94
++G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 161 (61.7 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 80 ATPIINGR 87
++GR
Sbjct: 131 KEHRLDGR 138
Score = 129 (50.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE E KK E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 79 DATPIINGRRANCNLA 94
++G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 161 (61.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 80 ATPIINGR 87
++GR
Sbjct: 131 KEHRLDGR 138
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + + +G+ F+TFKE E KK E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 79 DATPIINGRRANCNLA 94
I+G + +A
Sbjct: 214 KKFHTISGSKCEIKVA 229
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 146 (56.5 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 146 (56.5 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 146 (56.5 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 161 (61.7 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 61/230 (26%), Positives = 100/230 (43%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGFVTF+ E
Sbjct: 38 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQE 96
Query: 72 AAKKACEDATPIINGRRANCNLASLGARR----PRSASATPPQQGSNVGPRSTSSAPANH 127
A+K ++A + N + N+ ++ PRS+ P G+ ST H
Sbjct: 97 DAQKILQEAEKL-NYKDKKLNIGPAIRKQQVGIPRSSIM--PAAGTMYLTTSTGYPYTYH 153
Query: 128 --VQWYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTG-GSYVNGHF 183
V +++ P T P + + SP +A V Y QP Y Y+ G +
Sbjct: 154 NGVAYFHTPEVTSVPPPWPSRSISS------SPVMVAQPV-YQQPAYHYQAPAQYLPGQW 206
Query: 184 PQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVP 233
P P +T + + P +Q + PP + +VP
Sbjct: 207 QWGVPQSP--ASTAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMEASVP 254
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 161 (61.7 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K E
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVIE- 141
Query: 80 ATPIINGRRA---NCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
I RR C + R+ S V R TS + V PA
Sbjct: 142 ----IKQRREYGLECGPKEIAKRQKDKKKKKLATGSSRVAQRLTSPTRNHEVAGSIPA 195
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 162 (62.1 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 80 ATPIINGR 87
++GR
Sbjct: 135 KEHRLDGR 142
Score = 128 (50.1 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 45/176 (25%), Positives = 74/176 (42%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE + KK E
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 79 DATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQW------YY 132
++G + +A + + + N G R + + W Y+
Sbjct: 218 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQ--SWNQGYGNYW 275
Query: 133 PAGTPAT----PFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFP 184
G P + + +YGY P + S N K GG + N + P
Sbjct: 276 NQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGG-HQNNYKP 330
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 162 (62.1 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 80 ATPIINGR 87
++GR
Sbjct: 136 KEHRLDGR 143
Score = 128 (50.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 45/176 (25%), Positives = 74/176 (42%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE + KK E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 79 DATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQW------YY 132
++G + +A + + + N G R + + W Y+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQ--SWNQGYGNYW 276
Query: 133 PAGTPAT----PFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFP 184
G P + + +YGY P + S N K GG + N + P
Sbjct: 277 NQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGG-HQNNYKP 331
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 160 (61.4 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 63/230 (27%), Positives = 103/230 (44%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGFVTF+ E
Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQE 84
Query: 72 AAKKACEDATPIINGRRANCNLASLGARR----PRSASATPPQQGSNVGPRSTSSAPANH 127
A+K ++A + N + N+ ++ PRS+ P G+ ST H
Sbjct: 85 DAQKILQEAEKL-NYKDKKLNIGPAIRKQQVGIPRSSIM--PAAGTMYLTTSTGYPYTYH 141
Query: 128 --VQWYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGS-YVNGHF 183
V +++ P T P ++V SP +A + Y QP Y + Y+ G +
Sbjct: 142 NGVAYFHTPEVTSVPP---PWPSRSVCS---SPVMVAQPI-YQQPAYHYQATTQYLPGQW 194
Query: 184 PQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVP 233
P QP + L + P +Q + PP + T+VP
Sbjct: 195 QWSVP-QPSASSAPFLY-LQPSEVIYQPVEIAQDGGCVPPPLSLMETSVP 242
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 145 (56.1 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + + ++AL +H + I E VI+ D+ T RS+G+GF+TF PE A
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66
Query: 80 AT-PIINGRRANCNLASLGAR---------RPRSASATPPQQGSNVGPRSTSSAPANHVQ 129
++GR+ + + A A+ R R S +QGS G S P +V
Sbjct: 67 MNGESLDGRQIHVDHAGKSAQGTRRGAFGARGRGYSRGGGEQGSGNG--RYDSRPGGYVY 124
Query: 130 WY 131
Y
Sbjct: 125 GY 126
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 165 (63.1 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 25/52 (48%), Positives = 42/52 (80%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
K+F+GGL WET ++L+E+F ++G++ E ++ D TGRS+G+GF+TFK+P+
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 162
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/137 (29%), Positives = 64/137 (46%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+FVGG++ E + ++ F ++G +++A ++ DK TGR +G+GFVTF A + A
Sbjct: 194 SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALS 253
Query: 79 DATPI----INGRRANC--NLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYY 132
I I ++A NL G R R QG + G + + A V
Sbjct: 254 RPLEILGKTIEVKKAQPRGNLRDDGDRGRRGRDFRDGSQGGSDGSQQQAGAQGQGVM--- 310
Query: 133 PAG-TPATPFHHHQHHQ 148
P G TP + Q Q
Sbjct: 311 PGGLTPQMMAQYWQRMQ 327
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 161 (61.7 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 80 ATPIINGR 87
++GR
Sbjct: 131 KEHRLDGR 138
Score = 131 (51.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 46/176 (26%), Positives = 74/176 (42%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D + +G+ F+TFKE E KK E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 79 DATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQW------YY 132
++G + +A + + + N G R + + W Y+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQ--SWNQGYGNYW 271
Query: 133 PAGTPAT----PFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFP 184
G P + + +YGY P + S N K GG + N + P
Sbjct: 272 NQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGG-HQNNYKP 326
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 160 (61.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L ++ ++G++L+ I +D LTGRS+G+GFV FK+ E+ + E
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 80 ATPIINGR 87
++G+
Sbjct: 91 TEHKLDGK 98
Score = 113 (44.8 bits), Expect = 0.00030, P = 0.00030
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
KVFVGGL+ + E LRE+F YG+I + +D T +G+ FVTF E +K E+
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 161 (61.7 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 80 ATPIINGR 87
++GR
Sbjct: 130 KEHRLDGR 137
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 50/180 (27%), Positives = 76/180 (42%)
Query: 20 KVFVGGLAWETP-REALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKAC 77
K+FVGGL E+P E +RE+F ++G+I EA+ + D + +G+ F+TFKE E KK
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 78 EDATPIINGRRANCNLAS-----------LGARRPRSASATPPQQGSNVGPRSTS--SAP 124
E ++G + +A G R R+ G G +S S
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY 272
Query: 125 ANHVQWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFP 184
N+ Y P + + +YGY P + S N K GG + N + P
Sbjct: 273 GNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGG-HQNNYKP 331
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 144 (55.7 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80
+F+GGL + T +AL +HF +G I E V++ D+ T RS+G+ F+TF PE A A
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 81 T-PIINGRRANCNLASLGARRPRSAS 105
++GR+ + A AR R +
Sbjct: 68 NGKSLDGRQIRVDHAGKLARGTRGCA 93
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 162 (62.1 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GG++W+T LRE+F +G++L+ ++ +K TGR +G+GFV F +P + +D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 80 ATPIIN 85
I N
Sbjct: 67 KHHIDN 72
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL + R +F+ YG + +AVI+ D+ T R +G+GFV+F ++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 80 ATPIINGRR----------ANCNLASLGARRPRSASATPPQQGS 113
+NG++ AN +AS G R A P GS
Sbjct: 171 TFHDLNGKQVEVKRALPKDANPGIASGGGRGSGGAGGFPGYGGS 214
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 161 (61.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 56/192 (29%), Positives = 85/192 (44%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSA----------PA 125
CE IN + C A +P+ P +G G T A P
Sbjct: 167 VCEIHFHEINNKMVECKKA-----QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSYP- 220
Query: 126 NHVQWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGH--F 183
N V Y T P + +Q P Y P A V+ + S G G+ +
Sbjct: 221 NIVATYGRGYTGFAPSYSYQF-PGFPATAYGPVAAAAAVA--AARGSGRGARGRGGYAAY 277
Query: 184 PQMY-PGQPIVG 194
PQ PG P G
Sbjct: 278 PQSTGPGFPDYG 289
Score = 155 (59.6 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++LR++F K+G+I E +++ D T RS+G+GFVTF + + K
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
++ + + +A +P+ + T
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRT 109
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 141 (54.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 14 GDTTLT--KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
G+ +LT K+FVGGL+ T E L+E F +G I++AV++ D+ +G S+G+GFVT+ E
Sbjct: 29 GNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
Query: 72 AAKKACE 78
A A +
Sbjct: 89 VANNAMQ 95
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 155 (59.6 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 80 AT-PIINGRRANCNLASLGAR 99
++GR+ + A G R
Sbjct: 67 MNGKSVDGRQIRVDQAGGGDR 87
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 159 (61.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQ-QGSNVGP 117
+NG+ SL + + A AT P + S GP
Sbjct: 69 ----MNGK-------SLDGKAIKVAQATKPAFESSRRGP 96
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 152 (58.6 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/71 (43%), Positives = 47/71 (66%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET ++LREHF K+G + + V++ D T RS+G+GFVT+ E C
Sbjct: 12 LRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMC 71
Query: 78 EDATPI-INGR 87
A P ++GR
Sbjct: 72 --ARPHKVDGR 80
Score = 140 (54.3 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 33/101 (32%), Positives = 55/101 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F+KYG I ++ D+ +G+ +G+ FVTF + + K
Sbjct: 101 TVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 160
Query: 77 CEDATPIINGRRANCNLA-SLGARRPRSASATPPQQGSNVG 116
ING NC + +L + +SA + Q+G G
Sbjct: 161 VVQKYHTINGH--NCEVKKALSKQEMQSAGS---QRGCGGG 196
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 156 (60.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
A +NG+ + + S + + +G + G R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 151 (58.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
TK+FVGG++W+ L+ +F ++G++LE II D T +SKGYGF+TF+ ++ +K
Sbjct: 103 TKIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFITFENEDSIEKV-R 161
Query: 79 DATPIINGRRAN 90
+ + G+ N
Sbjct: 162 TSNLLFMGKNMN 173
Score = 51 (23.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 116 GPRSTSSAPANHVQWYYPAGTPATPFHHHQHHQAVPFY 153
GP + P ++P P P H H HH P +
Sbjct: 475 GPPMNTHHPHIPHHPHHPHQLPQHPSHQHMHHPQHPHH 512
Score = 49 (22.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 23/76 (30%), Positives = 31/76 (40%)
Query: 103 SASATPPQQGSNVGPRSTSSAPANHVQWYYPAGTPATPFHHHQHHQAVPFYGYSPTCIAT 162
S S PP ++ P + S N Q G + HHH HH Y P+ +A
Sbjct: 602 SMSQAPP----SIPPPHSLSGQNNQPQ----IGFDSYSHHHHHHH-------YQPSSLAK 646
Query: 163 D-VSYNQPKLSYTGGS 177
+ V N S +GGS
Sbjct: 647 ENVKTNNN--SSSGGS 660
Score = 49 (22.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 23/86 (26%), Positives = 34/86 (39%)
Query: 110 QQGSNVGPRSTSSAPANHVQWYYPAGTPATPFHH-HQHHQAVPFYGYSPTCIATDVSY-N 167
QQ P + +Q+YYP+ PF+ H HH P Y +SY N
Sbjct: 428 QQQQQQHPYTQQHMMNGGIQYYYPSPY-GEPFYQTHPHH---PSY---------QISYQN 474
Query: 168 QPKLSYTGGSYV--NGHFPQMYPGQP 191
P ++ T ++ + H P P P
Sbjct: 475 GPPMN-THHPHIPHHPHHPHQLPQHP 499
Score = 43 (20.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 102 RSASATPPQQGSNV---GPRSTSSAPANHVQWYYPAGTPATPFHHHQHH 147
+S S T QQ ++ GP S ++P + P+ T +TP HH
Sbjct: 237 QSPSQTQQQQLHHLHHHGPNSGGNSP---ISTSLPSSTSSTPNIISAHH 282
Score = 37 (18.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 16/70 (22%), Positives = 26/70 (37%)
Query: 142 HHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQPIVGATNTLMP 201
HHH H Q + Y P + Q + G G+ P + P +T++
Sbjct: 224 HHHPHGQII----YDPQQSPSQTQQQQLHHLHHHGPNSGGNSP-ISTSLP--SSTSSTPN 276
Query: 202 IYPLYHFHQS 211
I +H+ S
Sbjct: 277 IISAHHYGNS 286
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 155 (59.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I TGRSKG+GF+ FK+ + +K +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 80 ATPIINGR 87
++GR
Sbjct: 125 KEHRLDGR 132
Score = 136 (52.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIIS-DKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL E E +RE+F ++G+I EA+ + D T + +G+ F+TFKE E KK E
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 79 DATPIINGRRANCNLA 94
I+G + +A
Sbjct: 208 KKFHTISGSKCEIKVA 223
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 155 (59.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 60/230 (26%), Positives = 100/230 (43%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGF+TF+ E
Sbjct: 26 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQE 84
Query: 72 AAKKACEDATPIINGRRANCNLASLGARR----PRSASATPPQQGSNVGPRSTSSAPANH 127
A+K ++A + N + N+ ++ PRS+ P G+ ST H
Sbjct: 85 DAQKILQEAEKL-NYKDKKLNIGPAIRKQQVGIPRSSLM--PAAGTMYLTTSTGYPYTYH 141
Query: 128 --VQWYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSY-VNGHF 183
V +++ P T P + + SP +A V Y QP Y + + G +
Sbjct: 142 NGVAYFHTPEVTSVPPSWPSRSISS------SPVMVAQPV-YQQPAYHYQAPAQCLPGQW 194
Query: 184 PQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVP 233
P P A + + P +Q + PP + T+VP
Sbjct: 195 QWGVPQSPASSAP--FLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETSVP 242
>UNIPROTKB|F1NDD0 [details] [associations]
symbol:F1NDD0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AADN02019816 EMBL:AADN02019817 IPI:IPI00575003
ProteinModelPortal:F1NDD0 Ensembl:ENSGALT00000013174 Uniprot:F1NDD0
Length = 307
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 36/114 (31%), Positives = 65/114 (57%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
+FG T ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGF+TF+ E
Sbjct: 32 RFGTVTPNRIFVGGIDFKTNENDLRKFFAQYGCVREVKIVNDR-AGISKGYGFITFETQE 90
Query: 72 AAKKACEDATPIINGRRANCNLA-SLGARRPRSASATPPQQGSNVGPRSTSSAP 124
A+K ++A + N + N+ ++ ++ R + Q+G + ++S P
Sbjct: 91 DAQKILQEAKKL-NYKDKKLNIGPAIRKQQTRMPRSNVIQEGGTMYLTTSSGYP 143
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 139 (54.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
++FVG L W + LR +F ++G ++ A +I DK TG SKGYGFV+F A +K +
Sbjct: 16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENE 75
Query: 80 ATPIINGRRAN 90
I+ G N
Sbjct: 76 QKHILEGNYLN 86
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 139 (54.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVG L W + LR +F KYG + A ++ D+ G SK YGFV F + +A A
Sbjct: 11 KLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRDAFNSASNQ 70
Query: 80 ATPIINGR 87
T ++GR
Sbjct: 71 NTHFLDGR 78
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 139 (54.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 54 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 113
Query: 77 CEDATPIINGRRANCNLA-SLGARRPRSASAT 107
+NG NC + +L + SAS++
Sbjct: 114 VIQKYHTVNGH--NCEVRKALSKQEMASASSS 143
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 154 (59.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGLA ET +HF KYG+I ++VI+ D+ TG+ +G+GFVT+ + K +D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 80 ATPIINGRR 88
II G++
Sbjct: 103 -NHIIIGKQ 110
Score = 130 (50.8 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 48/184 (26%), Positives = 73/184 (39%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D K+FVGG+ + +E F ++G++ E I+ D TGRS+G+GFVT++ +
Sbjct: 126 DFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVD 185
Query: 75 KACEDATPI-INGRRANCNLASLGARRPRSASATPPQQG---SNVGPRSTSSAPANHVQW 130
I ++G + A ++P S + + G SN G H
Sbjct: 186 HLLAKGNRIELSGTQVEIKKAE--PKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGG 243
Query: 131 YYPAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQ 190
Y G P P+ + GY Y Y GG Y G P Y G+
Sbjct: 244 Y---GGPGGPYKSGGGYGGGRSGGYG--------GYGGEFGGYGGGGYGGGVGP--YRGE 290
Query: 191 PIVG 194
P +G
Sbjct: 291 PALG 294
Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 147 HQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPG 189
++ P GYS YN+ S GG G MY G
Sbjct: 287 YRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGPGDMYGG 329
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 155 (59.6 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 24/59 (40%), Positives = 44/59 (74%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + +K E
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 89
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 158 (60.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL W+T + LRE+F KYG + + I+ D TGRS+G+GF++F++P + + +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK- 218
Query: 80 ATPIINGR 87
I++G+
Sbjct: 219 TQHILDGK 226
Score = 134 (52.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 28/99 (28%), Positives = 53/99 (53%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ + + E F ++G I++A ++ DK TG+S+G+GFVT+ +A + C++
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
R+ A + +S++ G+N+ R
Sbjct: 304 KFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNGGNNMNRR 342
Score = 36 (17.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 98 ARRPRSASATPPQQGSNVGPRSTSSAPA 125
A P + + PQQ SN +T +PA
Sbjct: 414 AMPPNAMTLNQPQQDSN----ATQGSPA 437
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 155 (59.6 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 25/63 (39%), Positives = 45/63 (71%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T+ K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + K
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 76 ACE 78
E
Sbjct: 108 VLE 110
Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 155 (59.6 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 25/63 (39%), Positives = 45/63 (71%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T+ K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + K
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 76 ACE 78
E
Sbjct: 108 VLE 110
Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 155 (59.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 11 GQFG-DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE 69
GQ G TL K+FVGG+ +T LRE+F+KYG I II+D+ +GR +G+GFVTF +
Sbjct: 91 GQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDD 150
Query: 70 PEAAKKACEDATPIINGRRANCNLA 94
+ K ING A A
Sbjct: 151 YDPVDKIVLQKYHAINGHHAEVRKA 175
Score = 130 (50.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
+ K+F+GGL+++T E+LR+++ ++G++ + V++ D + RS+G GFVTF A
Sbjct: 8 IRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAM 67
Query: 78 EDATPIINGR 87
I+GR
Sbjct: 68 AARPHSIDGR 77
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 149 (57.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 30/100 (30%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F+KYG I ++ D +G+ +G+ FVTF + + K
Sbjct: 97 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKI 156
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
+ IING NC + +++ ++ + +G G
Sbjct: 157 VDQKYHIINGH--NCEVKKALSKQEMQSAGSQRGRGGGSG 194
Score = 144 (55.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA- 76
L K+ +GGL++ET ++LREHF+K+G + + V++ D T RS+G+GFVT+ E A
Sbjct: 7 LRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV 66
Query: 77 CEDATPI-INGR 87
C A P ++GR
Sbjct: 67 C--ARPHKVDGR 76
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 153 (58.9 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80
+FV L ++ E L E F +YG++++A + D G SKG+GF+ F+ PEAA+KACE+A
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDA-RGLSKGFGFIYFETPEAAQKACEEA 133
Query: 81 TPII-NGRRANCNLASLGARRPRSASA 106
+GRR N + A +P + A
Sbjct: 134 NNTFWHGRRINV-APRIKASKPGNRDA 159
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 155 (59.6 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 24/59 (40%), Positives = 44/59 (74%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + +K E
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 125
Score = 113 (44.8 bits), Expect = 0.00039, P = 0.00039
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 150 (57.9 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 58 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 117
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 118 VLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 156
Score = 36 (17.7 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 237 NYGGGNYGSGNYNDFGNYNQQP 258
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 153 (58.9 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET ++LREHF+K+G + + V++ D T RS+G+GFVT+ E A
Sbjct: 8 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 67
Query: 78 EDATPIINGR 87
++GR
Sbjct: 68 SARPHKVDGR 77
Score = 148 (57.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LRE+F+KYG I ++ D+ +G+ +G+ FVTF + + K
Sbjct: 98 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 157
Query: 77 CEDATPIINGRRANCNLA-SLGARRPRSASATPPQQGS 113
ING NC + +L + ++AS+ + GS
Sbjct: 158 VVQKYHTINGH--NCEVKKALSKQEMQTASSQRGKGGS 193
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 150 (57.9 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 80 ATPIINGR 87
+NGR
Sbjct: 68 RPHKVNGR 75
Score = 132 (51.5 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F +YG I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 96 TVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKI 155
Query: 77 CEDATPIINGRRANCNLASLGA-RRPRSAS 105
+NG NC + + +R RS S
Sbjct: 156 VIQKYHTVNGH--NCEVRKAPSNQRGRSGS 183
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 153 (58.9 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 58/216 (26%), Positives = 94/216 (43%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGF+TF+ E
Sbjct: 38 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQE 96
Query: 72 AAKKACEDATPIINGRRANCNLASLGARR----PRSASATPPQQGSNVGPRSTSSAPANH 127
A+K ++A + N + N+ ++ PRS+ P G+ ST H
Sbjct: 97 DAQKILQEAEKL-NYKDKKLNIGPAIRKQQVGIPRSSIM--PAAGTMYLTTSTGYPYTYH 153
Query: 128 --VQWYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFP 184
V +++ P T P + + SP +A V Y QP Y +
Sbjct: 154 NGVAYFHTPEVTSVPPSWPSRSISS------SPVMVAQPV-YQQPAYHYQAPA------- 199
Query: 185 QMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHI 220
Q PGQ G + P + S+ + P I
Sbjct: 200 QCIPGQWQWGVPQSPASSAPFLYLQPSEVIYQPVEI 235
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 155 (59.6 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 36/101 (35%), Positives = 59/101 (58%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG ++E +++ D+ T +S+G+ FVTF+ P AK A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 80 ATPIINGRRANCNLASLG-ARRPRSASATPPQQGSNVGPRS 119
+NG+ + + A +P + +TP ++G PRS
Sbjct: 69 ----LNGKALDGKPIKVEQATKP--SFSTPSRRGPPTSPRS 103
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 145 (56.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 80 ATPIINGR 87
++GR
Sbjct: 71 RPHKVDGR 78
Score = 129 (50.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVG + +T LR++F +YG I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQG 112
+NG NC + +++ ASA+ Q+G
Sbjct: 161 KYHTVNGH--NCEVRKAPSKQ-EMASASSSQRG 190
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 153 (58.9 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + K E
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 88
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 152 (58.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 55/181 (30%), Positives = 81/181 (44%)
Query: 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80
VFVGG+ +R F +YG + E II+D+ TG SKGYGFV+F +K E
Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQ 100
Query: 81 TPIINGRRANC-------NLASLGAR-RPRSASATPPQQGSNVGPRSTSSAPANHVQWYY 132
+G++ NL + + RP + PP Q +V S+P + + Y
Sbjct: 101 INF-HGKKLKLGPAIRKQNLCTYHVQPRPLIFNPPPPPQFQSVW-----SSP--NAETYM 152
Query: 133 PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSYVNGHFPQMYPGQPI 192
T P Q+ QA P Y SP + T Y P +Y + VN H ++ PG +
Sbjct: 153 QPPTMMNPIT--QYVQAYPPYPSSPVQVIT--GYQLPVYNYQAYTTVNYHCSEVDPGADL 208
Query: 193 V 193
+
Sbjct: 209 L 209
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 155 (59.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 37/100 (37%), Positives = 53/100 (53%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E ++I D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 80 AT-PIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
++G+ A+ + R PP S PR
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFE-RGRHGPPPPPRSRGPPR 107
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 153 (58.9 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET ++LREHF+K+G + + V++ D T RS+G+GFVT+ E A
Sbjct: 20 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 79
Query: 78 EDATPIINGR 87
++GR
Sbjct: 80 SARPHKVDGR 89
Score = 145 (56.1 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 32/99 (32%), Positives = 55/99 (55%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LRE+F+KYG I ++ D+ +G+ +G+ FVTF + + K
Sbjct: 110 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 169
Query: 77 CEDATPIINGRRANCNLA-SLGARRPRSASATPPQQGSN 114
ING NC + +L + ++AS+ + G +
Sbjct: 170 VVQKYHTINGH--NCEVKKALSKQEMQTASSQRGRGGGS 206
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 136 (52.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK E
Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 136 (52.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 39/118 (33%), Positives = 64/118 (54%)
Query: 16 TTLT--KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
+TLT ++FV GL+ T E L++ F +G +++A +I+D+ +GRSKG+GFVT+ E A
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDA 88
Query: 74 KKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANH-VQW 130
+KA + +N + + + + RPR P Q + P S S N + W
Sbjct: 89 EKAKAE----MNAKFLDGWVIFVDPARPREPRR--PLQQEPLRPSSESGFTTNKTIGW 140
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 136 (52.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+F+GGL+W ++L++ F +G++ E I DK +GRS+G+GFV F E A A +
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA-K 99
Query: 79 DA 80
DA
Sbjct: 100 DA 101
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 145 (56.1 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGFVTF+ E
Sbjct: 38 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQE 96
Query: 72 AAKKACEDA 80
A+K ++A
Sbjct: 97 DAQKILQEA 105
Score = 38 (18.4 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 101 PRSASATPPQQGSNVGPRSTSSAPANHVQ 129
P A P Q NV SSAP ++Q
Sbjct: 172 PAPAQCLPGQWQWNVPQSPASSAPFLYLQ 200
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 148 (57.2 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 32 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 91
Query: 78 EDATPIINGR 87
++GR
Sbjct: 92 NARPHKVDGR 101
Score = 144 (55.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/96 (32%), Positives = 56/96 (58%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 122 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 181
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQG 112
+NG NC + +++ ASA+ Q+G
Sbjct: 182 VIQKYHTVNGH--NCEVRKALSKQ-EMASASSSQRG 214
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 150 (57.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL +ET E+LR HF+++G + E V++ D T RS+G+GFVT+ E A
Sbjct: 13 LRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 78 EDATPIINGR 87
++GR
Sbjct: 73 NARPHKVDGR 82
Score = 125 (49.1 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 35/108 (32%), Positives = 60/108 (55%)
Query: 17 TLT-KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
+LT K+FVGG+ +T LR++ ++YG I I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 97 SLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDK 156
Query: 76 ACEDATPIINGRRANCNLASLGARRPRSASATPP-QQGSNVG-PRSTS 121
+N NC +L + SAS++ + GS G RS+S
Sbjct: 157 IVIRKYHTVNDH--NCVRKALSKQEMASASSSQRGRSGSGNGYGRSSS 202
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 150 (57.9 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 158 VLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 196
Score = 136 (52.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 ATPIINGR 87
I+GR
Sbjct: 70 RPHSIDGR 77
Score = 36 (17.7 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 277 NYGGGNYGSGNYNDFGNYNQQP 298
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 144 (55.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL+++T E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 6 LLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 78 EDATPIINGR 87
++GR
Sbjct: 66 NARPHKVDGR 75
Score = 128 (50.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVG +T LR++F++YG I I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 96 TVKKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 152
Query: 77 CEDATPIINGRRANCNLA-SLGARRPRSASATPP----QQGSNVGPRSTSSA 123
+NG NC + +L + SAS++ Q G G S+SS+
Sbjct: 153 VIQKYHTVNGH--NCEVRKALSKQEMASASSSQRGRSGQSGRGYGGSSSSSS 202
>FB|FBgn0011206 [details] [associations]
symbol:bol "boule" species:7227 "Drosophila melanogaster"
[GO:0007140 "male meiosis" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP;TAS] [GO:0048137 "spermatocyte
division" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=ISS;NAS;IMP] [GO:0008315 "meiotic G2/MI transition"
evidence=IMP;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IGI] [GO:0045836 "positive regulation of meiosis"
evidence=NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043204 "perikaryon" evidence=IDA] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=IMP] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:AE014296 GO:GO:0006417 GO:GO:0000166
GO:GO:0043204 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0046331
GO:GO:0007140 GO:GO:0007476 eggNOG:NOG260394
GeneTree:ENSGT00530000063480 EMBL:U51858 EMBL:AI063811
EMBL:AY089323 PIR:S68988 RefSeq:NP_523989.1 RefSeq:NP_729456.1
RefSeq:NP_729457.1 RefSeq:NP_729458.1 UniGene:Dm.20499
ProteinModelPortal:Q24207 SMR:Q24207 DIP:DIP-20744N IntAct:Q24207
MINT:MINT-911886 STRING:Q24207 PaxDb:Q24207 PRIDE:Q24207
EnsemblMetazoa:FBtr0076538 EnsemblMetazoa:FBtr0076540 GeneID:39049
KEGG:dme:Dmel_CG4760 UCSC:CG4760-RA CTD:39049 FlyBase:FBgn0011206
InParanoid:Q24207 OMA:NVPTIWP OrthoDB:EOG4S1RQF PhylomeDB:Q24207
ChiTaRS:bol GenomeRNAi:39049 NextBio:811653 Bgee:Q24207
GermOnline:CG4760 GO:GO:0008315 GO:GO:0048137 Uniprot:Q24207
Length = 228
Score = 147 (56.8 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 57/196 (29%), Positives = 87/196 (44%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG++ +T L F YG + II D+ G SKGYGFVTF+ +
Sbjct: 26 KYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQ 84
Query: 72 AAKKACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHV--- 128
A++ D ++ R N+A ++P + G+ V +T AP +++
Sbjct: 85 EAQRLQADGECVVL-RDRKLNIAPAIKKQPNPLQSIVATNGA-VYYTTTPPAPISNIPMD 142
Query: 129 QW---YYP--AGTPATPFHHHQHHQAVPFYGYS------PTCIATDVSYNQPKLSYTGGS 177
Q+ YP AG PA + Q PFY Y PT + N L ++ S
Sbjct: 143 QFAAAVYPPAAGVPA--IYPPSAMQYQPFYQYYSVPMNVPTIWPQNYQENHSPLLHSPTS 200
Query: 178 YVNGHFP--QMYPGQP 191
N H P Q +P P
Sbjct: 201 --NPHSPHSQSHPQSP 214
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 151 (58.2 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 37/101 (36%), Positives = 55/101 (54%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 80 ATPIINGRRANCNLASLG-ARRP--RSASATPPQQGSNVGP 117
+NG+ + + A +P S PP + GP
Sbjct: 71 ----MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGP 107
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 151 (58.2 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 37/101 (36%), Positives = 55/101 (54%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 80 ATPIINGRRANCNLASLG-ARRP--RSASATPPQQGSNVGP 117
+NG+ + + A +P S PP + GP
Sbjct: 69 ----MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGP 105
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 150 (57.9 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 169 VLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 207
Score = 136 (52.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 80 ATPIINGR 87
I+GR
Sbjct: 81 RPHSIDGR 88
Score = 36 (17.7 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 288 NYGGGNYGSGNYNDFGNYNQQP 309
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 150 (57.9 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 170 VLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 208
Score = 136 (52.9 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 ATPIINGR 87
I+GR
Sbjct: 82 RPHSIDGR 89
Score = 36 (17.7 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 289 NYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 150 (57.9 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 170 VLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 208
Score = 136 (52.9 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 ATPIINGR 87
I+GR
Sbjct: 82 RPHSIDGR 89
Score = 36 (17.7 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 289 NYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 150 (57.9 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 170 VLQKHHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 208
Score = 136 (52.9 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 ATPIINGR 87
I+GR
Sbjct: 82 RPHSIDGR 89
Score = 36 (17.7 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 289 NYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 153 (58.9 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET ++LREHF+K+G + + V++ D T RS+G+GFVT+ E A
Sbjct: 32 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 91
Query: 78 EDATPIINGR 87
++GR
Sbjct: 92 SARPHKVDGR 101
Score = 145 (56.1 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 32/99 (32%), Positives = 55/99 (55%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LRE+F+KYG I ++ D+ +G+ +G+ FVTF + + K
Sbjct: 122 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 181
Query: 77 CEDATPIINGRRANCNLA-SLGARRPRSASATPPQQGSN 114
ING NC + +L + ++AS+ + G +
Sbjct: 182 VVQKYHTINGH--NCEVKKALSKQEMQTASSQRGRGGGS 218
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 153 (58.9 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 35/100 (35%), Positives = 52/100 (52%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 80 AT-PIINGRRANCNLASLGARRPRSASATPPQQGSNVGPR 118
++G+ A+ + PP S PR
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGGRRGPPPPPRSRGPPR 108
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 151 (58.2 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 37/101 (36%), Positives = 55/101 (54%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET +AL F KYG I+E +++ D+ T +S+G+ FVTF+ P AK A D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 80 ATPIINGRRANCNLASLG-ARRP--RSASATPPQQGSNVGP 117
+NG+ + + A +P S PP + GP
Sbjct: 69 ----MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGP 105
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 150 (57.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 60/230 (26%), Positives = 99/230 (43%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGFVTF+ E
Sbjct: 38 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQE 96
Query: 72 AAKKACEDATPIINGRRANCNLASLGARR----PRSASATPPQQGSNVGPRSTSSAPANH 127
A+K ++A + N + N+ ++ PRS+ P G+ ST H
Sbjct: 97 DAQKILQEAEKL-NYKDKKLNIGPAIRKQQVGIPRSSIM--PAAGTMYLTTSTGYPYTYH 153
Query: 128 --VQWYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSY-VNGHF 183
V +++ P T P + + SP +A V Y QP Y + + G +
Sbjct: 154 NGVAYFHTPEVTSVPPPWPSRSISS------SPVMVAQPV-YQQPAYHYQAPAQCLPGQW 206
Query: 184 PQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVP 233
P P A + + P +Q + PP + +VP
Sbjct: 207 QWNVPQSPASSAP--FLYLQPSEVIYQPVEIAQDGGCVPPPLSLMEASVP 254
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 150 (57.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 59/230 (25%), Positives = 100/230 (43%)
Query: 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPE 71
++G ++FVGG+ ++T LR+ F +YG + E I++D+ G SKGYGFVTF+ E
Sbjct: 38 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQE 96
Query: 72 AAKKACEDATPIINGRRANCNLASLGARR----PRSASATPPQQGSNVGPRSTSSAPANH 127
A++ ++A + N + N+ ++ PRS+ P G+ ST H
Sbjct: 97 DAQRILQEAEKL-NYKDKKLNIGPAIRKQQVGIPRSSIM--PAAGTMYLTTSTGYPYTYH 153
Query: 128 --VQWYY-PAGTPATPFHHHQHHQAVPFYGYSPTCIATDVSYNQPKLSYTGGSY-VNGHF 183
V +++ P T P + + SP +A V Y QP Y + + G +
Sbjct: 154 NGVAYFHSPEVTSVPPSWPSRSISS------SPVMVAQPV-YQQPAYHYQAPAQCLPGQW 206
Query: 184 PQMYPGQPIVGATNTLMPIYPLYHFHQSQTMGLPAHIFPPTTAGHMTTVP 233
P P A+ + + P +Q + PP + +VP
Sbjct: 207 QWGVPQSPASSAS--FLYLQPSEVIYQPVEIAQDGGCVPPPLSLMEASVP 254
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + K E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + K E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
K+F+GGL+W+T ++ L E+ ++G++++ I +D +TGRS+G+GFV FK+ + K E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ +T E ++E+F +G+I + D T +G+ F+T+ + E KK E
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ET + L+ F K+G I E ++I D+ T +S+G+ F+TF+ P AK A +D
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 149 (57.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 170 FLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 208
Score = 136 (52.9 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 ATPIINGR 87
I+GR
Sbjct: 82 RPHSIDGR 89
Score = 36 (17.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 172 SYTGGSYVNGHFPQM--YPGQP 191
+Y GG+Y +G++ Y QP
Sbjct: 289 NYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 150 (57.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING A A L + + ++ +G N G
Sbjct: 169 VLQKYHTINGHNAEVRKA-LSRQEMQEVQSSRSGRGGNFG 207
Score = 136 (52.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL++ET E+LR +++++G + + V++ D + RS+G+GFVTF A
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 80 ATPIINGR 87
I+GR
Sbjct: 81 RPHSIDGR 88
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 151 (58.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ +T LRE+F+KYG I II+D+ +G+ +G+GFVTF + + K
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPAN 126
ING RA A L + + ++G G +S+ N
Sbjct: 173 KYHAINGHRAEVGKA-LSRQEMKEIQGPRSRKGGPFGFSVSSNGGGN 218
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
+ K+F+GGL+ ET E+L+ ++ ++G++ + V+I + +S+G+GFVTF A
Sbjct: 20 IRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAM 79
Query: 78 EDATPIINGR 87
I+GR
Sbjct: 80 AARPHSIDGR 89
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 150 (57.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA- 76
L K+F+GGL++ET ++LREHF+K+G + + V++ D T RS+G+GFVT+ E A
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 77 CEDATPI-INGR 87
C A P ++GR
Sbjct: 94 C--ARPHKVDGR 103
Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F+KYG I ++ D+ +G+ +G+ FVTF + + K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
ING NC + +++ ++ + +G G
Sbjct: 184 VVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRGGGSG 221
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 150 (57.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
L K+F+GGL++ET E+LR HF+++G + + V++ D T RS+G+GFVT+ E A
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 78 EDATPIINGR 87
++GR
Sbjct: 73 NTTPHKVDGR 82
Score = 137 (53.3 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKA 76
T+ K+FVGG+ +T LR++F++YG I I++D+ +G+ +G+ FVTF + ++ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 77 CEDATPIINGRRANCNLASLGARRPRSASATPPQQG 112
+ G NC + + ASA+ Q+G
Sbjct: 163 VIQKYHTVKGH--NCEVRK-ALPKQEMASASSSQRG 195
WARNING: HSPs involving 598 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 252 244 0.00098 113 3 11 22 0.45 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 848
No. of states in DFA: 609 (65 KB)
Total size of DFA: 205 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.88u 0.11s 25.99t Elapsed: 00:00:01
Total cpu time: 25.90u 0.11s 26.01t Elapsed: 00:00:01
Start: Fri May 10 10:01:09 2013 End: Fri May 10 10:01:10 2013
WARNINGS ISSUED: 2