BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025468
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70
G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT +
Sbjct: 26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85
Query: 71 EAAKKACEDATPIINGRRANCNLASLGARRPRS 103
AA++AC+D PII+GR+AN NLA LGA +PRS
Sbjct: 86 AAAERACKDPNPIIDGRKANVNLAYLGA-KPRS 117
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRS 103
+AC+D PII+GR+AN NLA LGA +PRS
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRS 94
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRS 103
+AC+D PII+GR+AN NLA LGA +PR+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRN 94
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ T +S+GYGFVT + AA+
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPRS 103
+AC+D PII+GR+AN NLA LGA +PR+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRN 94
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
DTT TK+FVGGL + T +LR++F+ +G+I EAV+I+D+ TG+S+GYGFVT + AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 75 KACEDATPIINGRRANCNLASLGARRPR 102
+AC+D PII+GR+AN NLA LGA +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPR 93
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 3 SNSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGY 62
S + S+ G DTT TK+FVGGL + T +LR++F+ +GDI EAV+I+D+ TG+S+GY
Sbjct: 16 SAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 75
Query: 63 GFVTFKEPEAAKKACEDATPIINGRRANCNLASLGARRPRS 103
GFVT + AA +AC+D PII+GR+AN NLA LGA +PRS
Sbjct: 76 GFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGA-KPRS 115
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
D+ K+FVGG++WET + LREHF YG++ +A+++ DKLTGR +G+GFV F +P
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHVQWYYPA 134
+ ++ I+ R + A R + G+ RS+ N + +
Sbjct: 62 RVLQEKHS-IDTREVDVKRA-----MSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVG 115
Query: 135 GTPATPFHHHQHHQAVPFYG-YSPTCIATDVSYNQPK 170
G P T + Q YG + I D + N+P+
Sbjct: 116 GLPPT-LTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL E R++F+ YG + + I+ D+ T R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 80 ATPIINGRRANCNLA 94
++G++ A
Sbjct: 171 TFHDLSGKQVEVKRA 185
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRAN---CNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + C + R R P++G GPRS SS
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTR------PKEGWQKGPRSDSS 110
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 3 SNSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGY 62
S+SS SN K+FVGG+ LRE+F K+G + E V+I D R +G+
Sbjct: 107 SDSSKSN----------KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 156
Query: 63 GFVTFKEPEAAKKACEDATPIINGRRANCNLASLGARRPRSASATPP------QQGSNVG 116
GF+TF++ ++ +A I G++ A PR + P Q GS V
Sbjct: 157 GFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE-----PRDSKNQAPGQPGASQWGSRVA 211
Query: 117 P 117
P
Sbjct: 212 P 212
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 53/75 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T E+LR++F +YGDI EA+++ D T RS+G+GFVTF +P + K
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 80 ATPIINGRRANCNLA 94
T ++G++ + +A
Sbjct: 90 GTHELDGKKVDPKVA 104
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G I +A+++ DK T R +G+GFVTF+ + K
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 175 VCEIHFHEINNKMVECKKA 193
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRAN---CNLASLGARRPRSASATPPQQGSNVGPRSTSS 122
++GR + C + R R P++G GPRS +S
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTR------PKEGWQKGPRSDNS 110
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAK 74
++ K+FVGG+ LRE+F K+G + E V+I D R +G+GF+TF++ ++
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 75 KACEDATPIINGRRANCNLASLGARRPRSASATPPQQ 111
+A I G++ A PR + + P Q
Sbjct: 169 QAVNMHFHDIMGKKVEVKRAE-----PRDSKSQAPGQ 200
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+FVGGL+W T +L++ F +G++ EA +I+D+ TGRS+G+GFV+F ++A A +
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 79 DAT-PIINGRRANCNLASLGARRPRSA 104
+ +NGR+ NLA+ + PRS+
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSS 121
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+FVGG+++ T LRE F KYG++++A II D+ TGRS+G+ FVTF E A A +
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 79 DATPIINGRRANCNLAS 95
++GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+ FVGGLAW T AL F +YGD++++ II+D+ TGRS+G+GFVTFK+ +A K A E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+GD+++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 ATPIINGR 87
+NG+
Sbjct: 156 KEHKLNGK 163
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
+ K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK
Sbjct: 179 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 238
Query: 78 E 78
E
Sbjct: 239 E 239
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+ FVGGL W T ++L+ F KYGD++++ II+D+ TGRS+G+GFVTF EA ++A E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+WET +E L +F ++GDI++ V++ + +GRS+G+GFVTF +P ++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 80 ATPIINGRRAN---CNLASLGARRPRSASA 106
++GR + CN +L ++P+
Sbjct: 68 GPHTLDGRTIDPKPCNPRTL--QKPKKGGG 95
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
KVF+GGL LR F++YG + E VI+ D+ +S+G+GF++F+E + + +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 80 ATPIINGRRANCNLASLGARRPRSASATPPQQGSNVG 116
+NG++ A PR S S VG
Sbjct: 157 RYINLNGKQVEIKKA-----EPRDGSGGQNSNNSTVG 188
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T E+L + F ++GDI ++ II+D+ TGRS+G+GFVTFK+ ++ + A E
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 67 MNGQELDGRNITVNEA 82
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T AL F +YG++L++ II+D+ TGRS+G+GFVTFK+ ++ K A E
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL +ET E+L + F KYG + E V++ D+ + RS+G+GFVTF+ PE AK D
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T E L+ F ++GD++++ II+D+ +GRS+G+GFVTFK+ +A + A E+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
+ K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 78 E 78
E
Sbjct: 241 E 241
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAA 73
G + K+FVGGL W T +E LR +F +YG++++ VI+ DK T +S+G+GFV FK+P
Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 74 KKACEDATPIINGRRAN---CNLASLGARRPRSASATPPQQGSNVGPRSTSSAPANHV 128
++GR + C + R R P++G T ++ +N +
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERSR------PREGWQQKEPRTENSRSNKI 116
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ L+E+F+++G + E V+I D R +G+GF+TF++ ++ +A
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 80 ATPIINGRRANCNLASLGARRPR-SASATPPQQGSN 114
I G++ A PR S S TP GSN
Sbjct: 175 HFHDIMGKKVEVKRAE-----PRDSKSQTPGPPGSN 205
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 44/56 (78%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
K+F+GGL WET ++LR++F+++G++L+ ++ D TGRS+G+GF+TFK P+ +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNE 219
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
K+FVGG+ + E R F+++G +L+A ++ DK TGR +G+GFVT+ E E+A +A
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEAT 304
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T ++ L+++F K+G++++ + D +TGRS+G+GFV FKE E+ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 ATPIINGR 87
+NG+
Sbjct: 158 KEHKLNGK 165
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
+ K+FVGGL+ +TP E +RE+F +G++ + D T + +G+ F+TFKE E KK
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 78 E 78
E
Sbjct: 241 E 241
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 2 SSNSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKG 61
SS++ S+ GQ D K+FVGGL+WET + LR+HF KYG+I + +D TGRS+G
Sbjct: 41 SSDNQSAASGQRDDDR--KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRG 98
Query: 62 YGFVTFKEPEAAKKACEDATPIINGRRAN 90
+ F+ F EA K IIN ++ +
Sbjct: 99 FAFIVFTNTEAIDKVSAADEHIINSKKVD 127
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL E E ++ +F ++G+I+E + DK + KG+ F+TF + +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 80 ATPIINGRRANCNLAS 95
I G+ + A+
Sbjct: 197 PKQKIAGKEVDVKRAT 212
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 44/60 (73%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+F+GG+A+ ++LRE F KYG++++ +I D+ TGRS+G+GFVTF EAA A +
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL ++T E+L + F KYG I E V++ D+ T RS+G+GFVTF+ P+ AK D
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK----D 61
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 62 AMMAMNGK 69
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
TK+F+GGL+W T +LR+ F +GD+++A +I D+ TGRS+G+GFV F + AA A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 79 DAT-PIINGRRANCN 92
+ +NGR N
Sbjct: 95 EMDGKELNGRHIRVN 109
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 166 VCEIHFHEINNKMVECKKA 184
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 166 VCEIHFHEINNKMVECKKA 184
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL+W+T +E LRE+F ++G++ E +++ D LT RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 80 ATPIINGRRANCNLASLGARRPRSASAT 107
+ ++ + + +A +P+ + T
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRT 108
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++ +F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 166 VCEIHFHEINNKMVECKKA 184
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2
PE=1 SV=1
Length = 328
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 1 MSSNSSSSNIGQFGDTTLT--KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGR 58
M +N S G D+ K+F+GGL+W+T ++LR++F K+G+I E +++ D T R
Sbjct: 1 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 59 SKGYGFVTFKEPEAAKKAC 77
S+G+GFVTF +P + K
Sbjct: 61 SRGFGFVTFADPASVDKVL 79
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T E+L F YG+IL++ +I+D+ TGRS+G+GFVTF + A E+
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T +L F ++G+++++ II+D+ TGRS+G+GFVTFK+ ++ K A E
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2
PE=1 SV=1
Length = 346
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 1 MSSNSSSSNIGQFGDTTLT--KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGR 58
M +N S G D+ K+F+GGL+W+T ++LR++F K+G+I E +++ D T R
Sbjct: 1 MEANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 59 SKGYGFVTFKEPEAAKKAC 77
S+G+GFVTF +P + K
Sbjct: 61 SRGFGFVTFADPASVDKVL 79
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75
T K+FVGGL+ T E ++++F+++G + +A+++ DK T R +G+GFVTF+ + +K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 76 ACEDATPIINGRRANCNLA 94
CE IN + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T +AL + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T +AL + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T +AL + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+++T ++L + F KYG I E V++ D+ T RS+G+GFVTF+ + AK D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK----D 62
Query: 80 ATPIINGR 87
A +NG+
Sbjct: 63 AMMAMNGK 70
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
+K+F+GGL+W+T ++ L E+ ++G++L+ I +D +TGRS+G+GFV FK+ + K E
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 79 DATPIINGR 87
++G+
Sbjct: 94 TKEHKLDGK 102
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78
KVFVGGL+ ET E ++++F +G+I + D T +G+ FVT+ + E +K E
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
+ FVGGLAW T L F ++G+++++ II+D+ TGRS+G+GFVTFK+ ++ K A ++
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 80 AT-PIINGRRANCNLA 94
++GR N A
Sbjct: 67 MNGKELDGRTITVNEA 82
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+F+GGL W+T + LRE+F KYG + + I+ D TGRS+G+GF++F++P + + +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK- 218
Query: 80 ATPIINGR 87
I++G+
Sbjct: 219 TQHILDGK 226
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGG+ + + E F ++G I++A ++ DK TG+S+G+GFVT+ +A + C++
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 80 ATPIINGRRANCNLAS 95
R+ A
Sbjct: 304 KFIDFKDRKIEIKRAE 319
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79
K+FVGGL+W+T ++ L+++F K+G++++ I D TGRS+G+GF+ FK+ + +K +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 80 ATPIINGR 87
++GR
Sbjct: 136 KEHRLDGR 143
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77
+ K+FVGGL E E +RE+F ++G+I + D + +G+ F+TFKE + KK
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
Query: 78 EDATPIINGRRANCNLA 94
E ++G + +A
Sbjct: 218 EKKFHTVSGSKCEIKVA 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,330,265
Number of Sequences: 539616
Number of extensions: 4659941
Number of successful extensions: 15817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 14451
Number of HSP's gapped (non-prelim): 1413
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)