Query 025468
Match_columns 252
No_of_seqs 319 out of 1717
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 2.8E-24 6.1E-29 179.2 13.2 87 11-97 5-91 (247)
2 PLN03134 glycine-rich RNA-bind 99.9 1.2E-20 2.6E-25 150.9 16.4 85 15-99 31-116 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 5.7E-19 1.2E-23 159.9 12.6 86 12-97 101-187 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.2E-18 1.1E-22 153.7 12.8 84 16-99 267-351 (352)
5 TIGR01659 sex-lethal sex-letha 99.8 1.3E-17 2.9E-22 150.9 15.1 86 15-100 190-278 (346)
6 KOG0148 Apoptosis-promoting RN 99.7 3.4E-17 7.4E-22 139.2 14.2 83 13-101 159-242 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-17 2.5E-22 151.4 11.3 82 17-98 2-84 (352)
8 TIGR01628 PABP-1234 polyadenyl 99.7 5.8E-17 1.3E-21 155.9 14.2 85 15-100 282-367 (562)
9 PF00076 RRM_1: RNA recognitio 99.7 4.1E-17 8.8E-22 113.2 8.3 69 21-90 1-70 (70)
10 KOG0122 Translation initiation 99.7 1.1E-16 2.4E-21 134.4 11.0 84 14-97 185-269 (270)
11 KOG0125 Ataxin 2-binding prote 99.7 5.7E-17 1.2E-21 141.1 9.5 85 12-98 90-175 (376)
12 KOG4849 mRNA cleavage factor I 99.7 4.8E-15 1E-19 130.1 16.9 79 14-92 76-157 (498)
13 KOG0117 Heterogeneous nuclear 99.7 1.9E-15 4.2E-20 136.2 13.7 83 14-104 255-338 (506)
14 PF14259 RRM_6: RNA recognitio 99.6 7.8E-16 1.7E-20 107.5 8.7 69 21-90 1-70 (70)
15 TIGR01645 half-pint poly-U bin 99.6 6.7E-16 1.4E-20 147.7 10.8 81 16-96 202-283 (612)
16 KOG0107 Alternative splicing f 99.6 9.6E-16 2.1E-20 123.0 9.7 79 16-99 8-87 (195)
17 KOG0148 Apoptosis-promoting RN 99.6 7.4E-16 1.6E-20 131.1 9.1 81 18-98 62-143 (321)
18 PLN03120 nucleic acid binding 99.6 1.7E-15 3.6E-20 130.3 10.4 77 18-97 4-80 (260)
19 KOG0113 U1 small nuclear ribon 99.6 2.9E-15 6.3E-20 129.0 11.7 85 12-96 95-180 (335)
20 KOG0144 RNA-binding protein CU 99.6 7.3E-16 1.6E-20 138.3 8.3 89 12-100 28-120 (510)
21 TIGR01645 half-pint poly-U bin 99.6 1.1E-15 2.4E-20 146.1 9.9 80 16-95 105-185 (612)
22 KOG4207 Predicted splicing fac 99.6 1.9E-15 4.2E-20 124.2 9.8 86 12-97 7-93 (256)
23 KOG0145 RNA-binding protein EL 99.6 2.3E-15 4.9E-20 127.7 10.0 91 12-102 35-126 (360)
24 TIGR01628 PABP-1234 polyadenyl 99.6 2.4E-15 5.3E-20 144.6 11.1 76 20-95 2-78 (562)
25 KOG0144 RNA-binding protein CU 99.6 5.8E-16 1.3E-20 139.0 5.3 85 17-102 123-211 (510)
26 KOG0111 Cyclophilin-type pepti 99.6 1.2E-15 2.7E-20 126.4 5.7 88 13-100 5-93 (298)
27 KOG0121 Nuclear cap-binding pr 99.6 2.6E-15 5.7E-20 114.8 7.1 80 16-95 34-114 (153)
28 TIGR01622 SF-CC1 splicing fact 99.6 1.1E-14 2.4E-19 136.5 11.9 83 15-97 86-168 (457)
29 TIGR01648 hnRNP-R-Q heterogene 99.6 6.6E-15 1.4E-19 140.5 10.3 78 15-93 55-134 (578)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.5E-14 3.2E-19 137.4 12.7 83 16-98 293-376 (509)
31 KOG0105 Alternative splicing f 99.6 1.7E-14 3.6E-19 116.9 10.4 81 15-98 3-84 (241)
32 TIGR01622 SF-CC1 splicing fact 99.6 2.1E-14 4.5E-19 134.7 12.3 79 18-96 186-265 (457)
33 PLN03213 repressor of silencin 99.6 1E-14 2.2E-19 133.1 9.6 79 14-96 6-87 (759)
34 smart00362 RRM_2 RNA recogniti 99.6 2.3E-14 4.9E-19 98.4 8.9 71 20-92 1-72 (72)
35 smart00360 RRM RNA recognition 99.5 2.7E-14 5.9E-19 97.6 8.4 70 23-92 1-71 (71)
36 PLN03121 nucleic acid binding 99.5 3.3E-14 7.1E-19 120.7 10.2 77 17-96 4-80 (243)
37 KOG0126 Predicted RNA-binding 99.5 1E-15 2.2E-20 123.5 0.8 81 16-96 33-114 (219)
38 KOG0108 mRNA cleavage and poly 99.5 1.9E-14 4.1E-19 132.8 9.2 82 19-100 19-101 (435)
39 KOG0117 Heterogeneous nuclear 99.5 2.5E-14 5.5E-19 129.0 9.2 80 16-95 81-162 (506)
40 COG0724 RNA-binding proteins ( 99.5 6.4E-14 1.4E-18 119.7 11.0 78 18-95 115-193 (306)
41 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-13 2.4E-18 132.2 11.8 75 17-99 232-309 (578)
42 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.5E-18 106.7 8.2 91 8-98 62-153 (170)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.7E-13 5.8E-18 128.3 12.4 78 15-97 272-351 (481)
44 cd00590 RRM RRM (RNA recogniti 99.5 3.7E-13 8.1E-18 92.8 9.4 73 20-93 1-74 (74)
45 KOG4205 RNA-binding protein mu 99.5 6.4E-14 1.4E-18 124.3 6.0 83 16-98 4-86 (311)
46 KOG0132 RNA polymerase II C-te 99.5 9.4E-12 2E-16 118.9 20.0 74 18-97 421-495 (894)
47 KOG0131 Splicing factor 3b, su 99.5 1.6E-13 3.4E-18 110.9 6.9 80 16-95 7-87 (203)
48 KOG0146 RNA-binding protein ET 99.4 1.1E-13 2.4E-18 117.9 5.6 87 12-98 279-366 (371)
49 KOG0114 Predicted RNA-binding 99.4 1.2E-12 2.6E-17 96.8 10.1 82 12-96 12-94 (124)
50 KOG0109 RNA-binding protein LA 99.4 2.1E-13 4.6E-18 117.3 6.5 71 19-97 3-74 (346)
51 KOG4212 RNA-binding protein hn 99.4 5.9E-13 1.3E-17 120.0 9.6 81 15-96 41-123 (608)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7.4E-13 1.6E-17 125.3 10.7 74 18-97 2-78 (481)
53 KOG0146 RNA-binding protein ET 99.4 2.3E-13 4.9E-18 116.0 6.1 85 16-101 17-105 (371)
54 smart00361 RRM_1 RNA recogniti 99.4 1.2E-12 2.7E-17 91.7 7.7 61 32-92 2-70 (70)
55 KOG0131 Splicing factor 3b, su 99.4 6E-13 1.3E-17 107.6 6.8 84 17-100 95-180 (203)
56 KOG0127 Nucleolar protein fibr 99.4 1.6E-12 3.5E-17 119.9 9.0 82 16-97 290-378 (678)
57 KOG0145 RNA-binding protein EL 99.3 7.7E-12 1.7E-16 106.4 10.6 83 14-96 274-357 (360)
58 KOG0153 Predicted RNA-binding 99.3 3.1E-12 6.7E-17 112.5 8.3 85 6-96 216-302 (377)
59 PF13893 RRM_5: RNA recognitio 99.3 6.2E-12 1.3E-16 84.1 7.8 55 35-94 1-56 (56)
60 KOG0123 Polyadenylate-binding 99.3 4.2E-12 9.1E-17 116.0 8.9 81 18-101 76-157 (369)
61 KOG0127 Nucleolar protein fibr 99.3 4.8E-12 1E-16 116.9 8.3 79 18-97 117-196 (678)
62 KOG4205 RNA-binding protein mu 99.3 9E-12 1.9E-16 110.7 8.4 85 17-101 96-180 (311)
63 KOG0147 Transcriptional coacti 99.3 6.5E-12 1.4E-16 116.1 6.6 82 17-98 277-359 (549)
64 KOG0124 Polypyrimidine tract-b 99.3 3.8E-12 8.2E-17 112.6 4.7 77 18-94 113-190 (544)
65 KOG0415 Predicted peptidyl pro 99.2 8.4E-12 1.8E-16 110.1 6.0 80 16-95 237-317 (479)
66 KOG0116 RasGAP SH3 binding pro 99.2 6.1E-11 1.3E-15 109.1 11.3 84 16-99 286-369 (419)
67 KOG4661 Hsp27-ERE-TATA-binding 99.2 7.1E-11 1.5E-15 109.7 9.4 81 16-96 403-484 (940)
68 KOG4208 Nucleolar RNA-binding 99.2 1.1E-10 2.3E-15 96.4 8.3 86 12-97 43-130 (214)
69 KOG0109 RNA-binding protein LA 99.2 4.1E-11 9E-16 103.3 6.1 76 15-98 75-151 (346)
70 TIGR01642 U2AF_lg U2 snRNP aux 99.1 8.6E-11 1.9E-15 111.7 7.7 78 12-95 169-258 (509)
71 KOG4206 Spliceosomal protein s 99.1 2.7E-10 5.8E-15 95.3 8.2 79 16-97 7-90 (221)
72 KOG0226 RNA-binding proteins [ 99.1 8.6E-11 1.9E-15 99.7 4.4 83 14-96 186-269 (290)
73 KOG0124 Polypyrimidine tract-b 99.1 2.1E-10 4.4E-15 101.8 7.0 82 15-96 207-289 (544)
74 KOG4212 RNA-binding protein hn 99.0 5.7E-10 1.2E-14 101.0 8.0 76 14-94 532-608 (608)
75 KOG0110 RNA-binding protein (R 99.0 2E-10 4.4E-15 109.0 5.1 83 14-96 609-692 (725)
76 KOG0533 RRM motif-containing p 99.0 1.3E-09 2.8E-14 93.5 9.0 84 14-98 79-163 (243)
77 KOG0110 RNA-binding protein (R 99.0 7.2E-10 1.6E-14 105.4 8.1 80 16-95 513-596 (725)
78 KOG0123 Polyadenylate-binding 99.0 8E-10 1.7E-14 101.1 6.0 82 15-97 267-349 (369)
79 KOG1457 RNA binding protein (c 98.9 1.4E-08 3E-13 85.0 11.7 91 15-105 31-126 (284)
80 KOG4209 Splicing factor RNPS1, 98.9 4E-09 8.6E-14 90.5 8.2 85 13-97 96-180 (231)
81 KOG4454 RNA binding protein (R 98.8 1.5E-09 3.3E-14 90.4 2.4 80 14-95 5-85 (267)
82 KOG1548 Transcription elongati 98.8 1.7E-08 3.7E-13 89.1 8.5 83 14-97 130-221 (382)
83 KOG0106 Alternative splicing f 98.7 1.2E-08 2.5E-13 86.0 3.7 71 19-97 2-73 (216)
84 KOG4211 Splicing factor hnRNP- 98.7 1E-07 2.2E-12 87.7 9.0 79 14-95 6-84 (510)
85 KOG4660 Protein Mei2, essentia 98.6 2.1E-08 4.6E-13 93.3 4.1 73 13-90 70-143 (549)
86 PF04059 RRM_2: RNA recognitio 98.6 3.3E-07 7.2E-12 68.1 8.6 80 18-97 1-87 (97)
87 KOG0151 Predicted splicing reg 98.5 2.4E-07 5.1E-12 88.5 7.9 82 14-95 170-255 (877)
88 KOG1995 Conserved Zn-finger pr 98.4 2.6E-07 5.7E-12 82.2 5.6 86 13-98 61-155 (351)
89 KOG0147 Transcriptional coacti 98.4 8.7E-08 1.9E-12 89.1 1.4 91 10-100 171-261 (549)
90 KOG4211 Splicing factor hnRNP- 98.4 1.1E-06 2.5E-11 80.9 8.1 79 16-95 101-180 (510)
91 KOG0120 Splicing factor U2AF, 98.3 7.5E-07 1.6E-11 83.5 5.5 89 12-100 283-372 (500)
92 KOG1190 Polypyrimidine tract-b 98.3 4.3E-06 9.3E-11 75.6 9.6 76 18-98 297-374 (492)
93 PF11608 Limkain-b1: Limkain b 98.3 4.4E-06 9.6E-11 59.9 7.2 68 19-96 3-76 (90)
94 KOG0106 Alternative splicing f 98.2 2.1E-06 4.6E-11 72.4 5.3 73 14-94 95-168 (216)
95 KOG4210 Nuclear localization s 98.1 3.1E-06 6.7E-11 75.0 5.4 85 14-98 180-265 (285)
96 PF08777 RRM_3: RNA binding mo 98.1 7E-06 1.5E-10 62.1 6.2 70 19-94 2-77 (105)
97 KOG1457 RNA binding protein (c 98.0 6.9E-06 1.5E-10 69.0 4.1 63 14-80 206-268 (284)
98 KOG0129 Predicted RNA-binding 97.9 5.4E-05 1.2E-09 70.5 9.1 70 12-82 253-328 (520)
99 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.2E-05 7E-10 51.1 5.0 52 19-77 2-53 (53)
100 COG5175 MOT2 Transcriptional r 97.9 4.6E-05 1E-09 67.6 7.2 80 16-95 112-201 (480)
101 KOG1855 Predicted RNA-binding 97.8 2.8E-05 6.2E-10 70.8 5.0 73 14-86 227-312 (484)
102 KOG4206 Spliceosomal protein s 97.8 0.00011 2.4E-09 61.9 7.6 76 15-95 143-220 (221)
103 KOG4307 RNA binding protein RB 97.7 0.00015 3.3E-09 69.7 8.3 77 17-93 866-943 (944)
104 KOG0129 Predicted RNA-binding 97.6 0.0002 4.3E-09 66.8 7.9 65 16-80 368-433 (520)
105 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00028 6E-09 52.8 7.1 79 16-95 4-90 (100)
106 KOG1456 Heterogeneous nuclear 97.6 0.00042 9E-09 62.4 9.3 80 13-97 282-363 (494)
107 KOG2314 Translation initiation 97.5 0.0002 4.4E-09 67.4 6.1 80 15-95 55-142 (698)
108 PF10309 DUF2414: Protein of u 97.4 0.00074 1.6E-08 45.9 6.8 58 15-80 2-62 (62)
109 KOG1365 RNA-binding protein Fu 97.4 0.0012 2.5E-08 59.8 9.3 78 18-96 280-361 (508)
110 KOG1190 Polypyrimidine tract-b 97.3 0.00064 1.4E-08 61.9 6.7 77 16-96 412-490 (492)
111 KOG0120 Splicing factor U2AF, 97.2 0.00098 2.1E-08 62.9 7.4 64 33-96 424-491 (500)
112 KOG0105 Alternative splicing f 97.2 0.0048 1E-07 50.8 9.9 73 15-94 112-187 (241)
113 PF08952 DUF1866: Domain of un 97.1 0.002 4.3E-08 51.2 7.1 57 34-98 52-108 (146)
114 KOG1548 Transcription elongati 97.1 0.0016 3.4E-08 58.2 7.1 77 15-95 262-350 (382)
115 KOG1365 RNA-binding protein Fu 97.1 0.00097 2.1E-08 60.3 5.7 73 16-89 159-235 (508)
116 KOG0128 RNA-binding protein SA 97.1 0.00034 7.3E-09 68.7 2.6 78 18-96 736-814 (881)
117 KOG2202 U2 snRNP splicing fact 97.0 0.00028 6E-09 60.6 1.5 63 33-96 83-147 (260)
118 KOG0112 Large RNA-binding prot 97.0 0.0014 3.1E-08 64.8 5.9 82 10-97 447-531 (975)
119 KOG2193 IGF-II mRNA-binding pr 96.9 0.00052 1.1E-08 62.7 2.2 78 19-102 2-81 (584)
120 KOG3152 TBP-binding protein, a 96.8 0.001 2.3E-08 57.1 3.4 72 17-88 73-157 (278)
121 PF08675 RNA_bind: RNA binding 96.8 0.0087 1.9E-07 43.0 7.3 56 17-81 8-63 (87)
122 KOG0115 RNA-binding protein p5 96.8 0.0016 3.4E-08 56.1 4.0 61 19-80 32-92 (275)
123 KOG4676 Splicing factor, argin 96.7 0.002 4.3E-08 58.4 4.7 79 17-95 6-87 (479)
124 KOG0128 RNA-binding protein SA 96.6 9.9E-05 2.1E-09 72.3 -4.8 71 16-86 665-735 (881)
125 KOG4307 RNA binding protein RB 96.6 0.0013 2.7E-08 63.6 2.4 79 15-94 431-511 (944)
126 PF15023 DUF4523: Protein of u 96.4 0.02 4.4E-07 45.3 7.8 77 13-96 81-161 (166)
127 KOG2416 Acinus (induces apopto 96.4 0.007 1.5E-07 57.6 5.9 77 14-96 440-521 (718)
128 KOG1996 mRNA splicing factor [ 96.4 0.0089 1.9E-07 52.4 6.1 65 33-97 301-367 (378)
129 KOG1456 Heterogeneous nuclear 96.1 0.2 4.4E-06 45.5 13.6 69 25-98 129-200 (494)
130 KOG0112 Large RNA-binding prot 96.0 0.0016 3.5E-08 64.4 -0.2 82 12-94 366-448 (975)
131 KOG2591 c-Mpl binding protein, 96.0 0.014 3E-07 55.3 5.6 74 16-96 173-251 (684)
132 KOG2068 MOT2 transcription fac 95.9 0.0026 5.7E-08 56.6 0.7 79 17-95 76-161 (327)
133 KOG4210 Nuclear localization s 95.3 0.019 4.1E-07 51.0 3.8 82 16-97 86-168 (285)
134 KOG4285 Mitotic phosphoprotein 95.2 0.093 2E-06 46.4 7.8 72 18-96 197-269 (350)
135 PF03880 DbpA: DbpA RNA bindin 95.2 0.12 2.5E-06 36.3 6.9 66 20-94 2-74 (74)
136 PF07576 BRAP2: BRCA1-associat 94.7 0.36 7.9E-06 36.7 8.9 67 16-84 11-79 (110)
137 KOG2135 Proteins containing th 94.3 0.024 5.1E-07 52.8 1.9 76 16-97 370-446 (526)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.085 1.8E-06 43.5 4.0 82 15-96 4-97 (176)
139 KOG4660 Protein Mei2, essentia 93.1 0.15 3.4E-06 48.3 5.0 56 43-98 414-474 (549)
140 KOG2253 U1 snRNP complex, subu 92.6 0.066 1.4E-06 51.8 1.9 71 16-95 38-109 (668)
141 PF11767 SET_assoc: Histone ly 92.4 0.63 1.4E-05 32.0 6.1 54 29-91 11-65 (66)
142 KOG4574 RNA-binding protein (c 91.6 0.11 2.4E-06 51.6 2.2 71 20-96 300-373 (1007)
143 PF04847 Calcipressin: Calcipr 91.5 0.62 1.3E-05 38.7 6.3 60 31-96 8-70 (184)
144 KOG4454 RNA binding protein (R 88.1 0.12 2.6E-06 43.8 -0.6 67 13-80 75-145 (267)
145 PRK14548 50S ribosomal protein 86.8 2.3 5E-05 30.7 5.5 59 20-81 22-82 (84)
146 KOG2318 Uncharacterized conser 86.3 2.5 5.4E-05 40.7 6.9 80 15-94 171-305 (650)
147 KOG4483 Uncharacterized conser 85.7 2.5 5.3E-05 39.1 6.4 59 14-79 387-446 (528)
148 TIGR03636 L23_arch archaeal ri 83.8 4.2 9.1E-05 28.8 5.6 59 20-81 15-75 (77)
149 PF07530 PRE_C2HC: Associated 82.8 2.5 5.5E-05 29.1 4.1 62 33-96 2-64 (68)
150 KOG4676 Splicing factor, argin 81.6 0.19 4.2E-06 45.9 -2.3 73 18-94 151-223 (479)
151 KOG0804 Cytoplasmic Zn-finger 80.9 6.9 0.00015 36.7 7.3 66 18-85 74-141 (493)
152 KOG2193 IGF-II mRNA-binding pr 79.5 0.18 3.9E-06 46.6 -3.2 76 17-96 79-156 (584)
153 KOG4410 5-formyltetrahydrofola 78.2 4.4 9.6E-05 35.8 4.9 49 16-70 328-377 (396)
154 smart00596 PRE_C2HC PRE_C2HC d 77.0 3.5 7.5E-05 28.6 3.2 61 33-95 2-63 (69)
155 PTZ00191 60S ribosomal protein 71.3 11 0.00024 30.0 5.2 57 20-79 83-141 (145)
156 COG0724 RNA-binding proteins ( 70.7 6.4 0.00014 32.7 4.2 61 12-72 219-279 (306)
157 KOG2236 Uncharacterized conser 70.6 71 0.0015 30.3 11.0 14 34-47 246-259 (483)
158 PF10567 Nab6_mRNP_bdg: RNA-re 70.3 9.8 0.00021 33.8 5.2 85 12-96 9-107 (309)
159 PF08206 OB_RNB: Ribonuclease 68.0 1.3 2.7E-05 29.5 -0.6 37 59-95 7-44 (58)
160 PF15513 DUF4651: Domain of un 67.1 13 0.00028 25.2 4.1 18 33-50 9-26 (62)
161 KOG4019 Calcineurin-mediated s 66.8 5.6 0.00012 32.8 2.8 73 18-96 10-89 (193)
162 PF00403 HMA: Heavy-metal-asso 64.1 36 0.00077 22.1 6.0 57 20-82 1-61 (62)
163 KOG4365 Uncharacterized conser 60.8 1.6 3.4E-05 40.8 -1.6 77 19-96 4-81 (572)
164 PRK01178 rps24e 30S ribosomal 59.8 20 0.00043 26.7 4.4 46 29-75 30-80 (99)
165 cd04883 ACT_AcuB C-terminal AC 59.1 50 0.0011 21.9 6.6 50 32-83 15-67 (72)
166 PRK11901 hypothetical protein; 57.7 38 0.00083 30.6 6.6 55 26-82 250-306 (327)
167 PF03468 XS: XS domain; Inter 57.2 21 0.00045 27.3 4.3 45 30-77 29-74 (116)
168 PF07292 NID: Nmi/IFP 35 domai 55.9 7.6 0.00017 28.2 1.6 26 14-39 48-73 (88)
169 KOG3424 40S ribosomal protein 55.1 36 0.00078 26.2 5.1 46 29-75 34-84 (132)
170 PRK10629 EnvZ/OmpR regulon mod 54.2 94 0.002 24.1 7.6 68 19-94 36-108 (127)
171 PF08544 GHMP_kinases_C: GHMP 54.2 40 0.00087 23.2 5.2 42 33-80 37-79 (85)
172 PF02714 DUF221: Domain of unk 51.0 18 0.00039 32.2 3.6 32 63-95 1-32 (325)
173 PF07292 NID: Nmi/IFP 35 domai 50.1 22 0.00047 25.9 3.2 33 63-95 1-35 (88)
174 PF11411 DNA_ligase_IV: DNA li 49.2 12 0.00026 22.5 1.4 17 28-44 19-35 (36)
175 COG5353 Uncharacterized protei 49.2 81 0.0018 25.3 6.4 56 17-72 86-154 (161)
176 KOG2891 Surface glycoprotein [ 48.4 16 0.00034 32.4 2.6 36 16-51 147-194 (445)
177 COG5193 LHP1 La protein, small 48.2 8.5 0.00018 35.6 1.0 64 15-78 171-244 (438)
178 cd04908 ACT_Bt0572_1 N-termina 47.8 79 0.0017 20.8 8.1 58 20-82 3-62 (66)
179 PTZ00071 40S ribosomal protein 45.5 40 0.00086 26.5 4.2 46 29-75 35-86 (132)
180 PF09707 Cas_Cas2CT1978: CRISP 43.2 50 0.0011 23.9 4.2 49 17-68 24-72 (86)
181 PRK11634 ATP-dependent RNA hel 41.2 2.4E+02 0.0052 28.0 10.0 69 18-95 486-561 (629)
182 PF01282 Ribosomal_S24e: Ribos 40.3 89 0.0019 22.3 5.1 47 28-75 11-62 (84)
183 PRK11230 glycolate oxidase sub 40.3 1.2E+02 0.0025 29.2 7.4 49 31-80 202-254 (499)
184 KOG2295 C2H2 Zn-finger protein 40.0 5.4 0.00012 38.3 -1.6 64 17-80 230-293 (648)
185 PRK11558 putative ssRNA endonu 38.0 52 0.0011 24.4 3.6 50 18-70 27-76 (97)
186 PRK10905 cell division protein 38.0 48 0.001 29.9 4.1 62 18-83 247-309 (328)
187 COG2004 RPS24A Ribosomal prote 37.4 82 0.0018 23.8 4.7 47 28-75 30-81 (107)
188 KOG4213 RNA-binding protein La 36.9 45 0.00098 27.6 3.4 57 18-80 111-170 (205)
189 cd04889 ACT_PDH-BS-like C-term 35.9 1.1E+02 0.0024 19.1 5.5 42 33-77 13-55 (56)
190 PF04026 SpoVG: SpoVG; InterP 35.9 66 0.0014 23.1 3.8 26 44-69 2-27 (84)
191 cd04882 ACT_Bt0572_2 C-termina 35.7 1.2E+02 0.0026 19.3 5.5 48 33-82 14-62 (65)
192 CHL00030 rpl23 ribosomal prote 35.7 1E+02 0.0023 22.5 4.9 35 20-54 20-56 (93)
193 PF13046 DUF3906: Protein of u 35.6 44 0.00096 22.7 2.7 33 31-65 31-63 (64)
194 KOG0226 RNA-binding proteins [ 35.2 12 0.00027 32.6 -0.1 71 16-87 94-168 (290)
195 PF08734 GYD: GYD domain; Int 34.3 1.6E+02 0.0034 21.2 5.7 44 33-80 23-67 (91)
196 cd06405 PB1_Mekk2_3 The PB1 do 33.9 1.7E+02 0.0037 20.7 7.2 62 25-94 15-77 (79)
197 COG5638 Uncharacterized conser 33.9 36 0.00079 31.8 2.7 38 15-52 143-185 (622)
198 cd04909 ACT_PDH-BS C-terminal 32.8 1.4E+02 0.0031 19.4 5.7 47 32-80 15-62 (69)
199 PF01071 GARS_A: Phosphoribosy 31.7 1.1E+02 0.0023 25.7 5.0 46 31-80 25-70 (194)
200 cd04880 ACT_AAAH-PDT-like ACT 31.1 1.7E+02 0.0036 19.7 5.9 47 33-80 14-64 (75)
201 PF03439 Spt5-NGN: Early trans 31.0 71 0.0015 22.7 3.4 22 59-80 43-64 (84)
202 PF08442 ATP-grasp_2: ATP-gras 30.9 66 0.0014 27.0 3.7 53 30-85 25-81 (202)
203 PF02426 MIase: Muconolactone 30.4 2.2E+02 0.0047 20.8 5.9 52 25-80 10-71 (91)
204 PRK13259 regulatory protein Sp 29.9 85 0.0018 23.1 3.6 26 44-69 2-27 (94)
205 PRK08559 nusG transcription an 28.8 1.7E+02 0.0036 23.3 5.5 31 45-80 36-66 (153)
206 PF14893 PNMA: PNMA 28.8 20 0.00044 32.6 0.2 24 17-40 17-40 (331)
207 PF11080 DUF2622: Protein of u 28.8 2.4E+02 0.0052 20.8 6.3 78 14-95 4-87 (96)
208 KOG4008 rRNA processing protei 28.3 45 0.00098 28.8 2.2 35 14-48 36-70 (261)
209 PF08502 LeuA_dimer: LeuA allo 28.0 2.2E+02 0.0047 21.8 6.0 26 29-54 1-33 (133)
210 CHL00123 rps6 ribosomal protei 27.8 1.9E+02 0.0042 21.1 5.3 60 19-80 9-82 (97)
211 TIGR01033 DNA-binding regulato 27.6 1.9E+02 0.004 25.0 6.0 44 18-68 94-143 (238)
212 TIGR01873 cas_CT1978 CRISPR-as 27.4 49 0.0011 24.0 1.9 49 18-69 25-74 (87)
213 PF14401 RLAN: RimK-like ATPgr 27.4 1.2E+02 0.0025 24.4 4.4 63 15-77 84-147 (153)
214 PF15063 TC1: Thyroid cancer p 27.0 38 0.00083 23.9 1.3 35 11-45 18-52 (79)
215 PF13721 SecD-TM1: SecD export 26.2 1.5E+02 0.0033 21.8 4.6 46 33-86 49-95 (101)
216 cd04905 ACT_CM-PDT C-terminal 26.0 2.2E+02 0.0048 19.4 6.1 47 33-80 16-66 (80)
217 PF07876 Dabb: Stress responsi 25.9 2.4E+02 0.0051 19.8 5.7 55 23-77 6-71 (97)
218 cd04904 ACT_AAAH ACT domain of 25.5 2.2E+02 0.0048 19.3 5.5 46 33-80 15-63 (74)
219 KOG3432 Vacuolar H+-ATPase V1 24.7 1E+02 0.0022 23.4 3.3 24 27-50 42-65 (121)
220 PF05189 RTC_insert: RNA 3'-te 24.7 80 0.0017 23.1 2.8 49 20-68 12-65 (103)
221 TIGR00387 glcD glycolate oxida 24.4 1.2E+02 0.0027 28.1 4.6 50 30-80 144-197 (413)
222 PRK12448 dihydroxy-acid dehydr 23.7 3.3E+02 0.0071 27.1 7.4 35 59-95 447-481 (615)
223 KOG1232 Proteins containing th 23.7 1E+02 0.0023 28.7 3.8 55 25-80 231-289 (511)
224 PF15407 Spo7_2_N: Sporulation 23.6 23 0.00051 24.3 -0.3 26 16-41 25-50 (67)
225 TIGR00110 ilvD dihydroxy-acid 23.6 4E+02 0.0087 26.0 7.9 35 59-95 382-416 (535)
226 KOG0156 Cytochrome P450 CYP2 s 23.6 1.5E+02 0.0032 28.5 5.1 59 22-89 36-97 (489)
227 KOG2187 tRNA uracil-5-methyltr 23.3 77 0.0017 30.6 3.0 41 60-100 63-104 (534)
228 TIGR00358 3_prime_RNase VacB a 23.3 34 0.00074 34.1 0.7 38 58-95 24-63 (654)
229 COG2608 CopZ Copper chaperone 23.2 2.5E+02 0.0053 19.0 7.0 58 19-82 4-65 (71)
230 PF10281 Ish1: Putative stress 23.2 68 0.0015 19.0 1.8 18 29-46 3-20 (38)
231 PLN02805 D-lactate dehydrogena 23.1 1.3E+02 0.0029 29.3 4.7 50 30-80 278-331 (555)
232 PF14111 DUF4283: Domain of un 23.0 48 0.001 25.7 1.4 71 20-95 17-90 (153)
233 PHA01632 hypothetical protein 22.8 76 0.0016 21.0 2.0 19 23-41 21-39 (64)
234 PF11249 DUF3047: Protein of u 22.6 1.6E+02 0.0035 24.3 4.5 48 17-64 120-177 (183)
235 PF02617 ClpS: ATP-dependent C 22.5 81 0.0018 22.1 2.4 34 60-93 47-82 (82)
236 PRK00911 dihydroxy-acid dehydr 22.4 4E+02 0.0086 26.2 7.6 35 59-95 397-431 (552)
237 PRK00110 hypothetical protein; 21.7 3.2E+02 0.0069 23.7 6.3 51 18-75 94-152 (245)
238 PF12623 Hen1_L: RNA repair, l 21.5 2.1E+02 0.0045 24.8 4.9 62 18-80 118-183 (245)
239 COG0150 PurM Phosphoribosylami 21.2 25 0.00054 32.0 -0.7 44 33-80 276-319 (345)
240 TIGR01743 purR_Bsub pur operon 20.9 2.1E+02 0.0045 25.2 5.0 40 34-80 44-85 (268)
241 TIGR02062 RNase_B exoribonucle 20.8 40 0.00088 33.5 0.6 40 57-96 25-64 (639)
242 cd00027 BRCT Breast Cancer Sup 20.7 1.3E+02 0.0028 18.8 3.0 27 19-45 2-28 (72)
243 COG4747 ACT domain-containing 20.7 3.3E+02 0.0072 21.1 5.4 28 59-86 108-135 (142)
244 cd00874 RNA_Cyclase_Class_II R 20.6 1.2E+02 0.0026 27.5 3.6 48 20-68 188-238 (326)
245 smart00195 DSPc Dual specifici 20.5 3.2E+02 0.007 20.5 5.7 28 19-48 6-33 (138)
246 COG0045 SucC Succinyl-CoA synt 20.3 4.3E+02 0.0093 24.7 7.0 65 30-97 26-98 (387)
247 COG5470 Uncharacterized conser 20.3 1.9E+02 0.0042 21.3 3.9 43 34-78 24-71 (96)
248 PHA00742 hypothetical protein 20.3 56 0.0012 26.8 1.3 51 27-80 98-152 (211)
249 COG4776 Rnb Exoribonuclease II 20.2 1.2E+02 0.0026 29.1 3.5 37 59-95 30-66 (645)
250 PRK14046 malate--CoA ligase su 20.2 3.6E+02 0.0078 25.0 6.8 51 31-84 27-81 (392)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=2.8e-24 Score=179.18 Aligned_cols=87 Identities=69% Similarity=1.231 Sum_probs=83.7
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeE
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRAN 90 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~ 90 (252)
....|.+.+|||||+|+|++++|+|+++|++||+|++.+|+.|+.+|++||||||+|+|.|+|++||+..+..|+||+..
T Consensus 5 ~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 5 NPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred CCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++|...
T Consensus 85 cnlA~lg 91 (247)
T KOG0149|consen 85 CNLASLG 91 (247)
T ss_pred cchhhhc
Confidence 9999874
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.2e-20 Score=150.86 Aligned_cols=85 Identities=39% Similarity=0.704 Sum_probs=79.4
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
....++|||+||+++++|++|+++|++||+|++|+|+.|+.++++||||||+|++.++|++||+.+ +.+|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred cccCCC
Q 025468 94 ASLGAR 99 (252)
Q Consensus 94 a~~~~~ 99 (252)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 975443
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=5.7e-19 Score=159.86 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=80.5
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..++...++|||+||++++||++|+++|+.||+|++|+|++|+.++++||||||+|+++++|++||+.| +.+|.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 356677899999999999999999999999999999999999999999999999999999999999999 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++..
T Consensus 181 V~~a~p~ 187 (346)
T TIGR01659 181 VSYARPG 187 (346)
T ss_pred eeccccc
Confidence 9998753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=5.2e-18 Score=153.65 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=78.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|.+||+.| +.+|+|++|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44557999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCCC
Q 025468 95 SLGAR 99 (252)
Q Consensus 95 ~~~~~ 99 (252)
..+..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 76543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.3e-17 Score=150.94 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=77.8
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC--eeeEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING--RRANC 91 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G--~~l~v 91 (252)
+...++|||+||++++|||+|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.| +..+++ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999 676765 68999
Q ss_pred EEcccCCCC
Q 025468 92 NLASLGARR 100 (252)
Q Consensus 92 ~~a~~~~~~ 100 (252)
++++...+.
T Consensus 270 ~~a~~~~~~ 278 (346)
T TIGR01659 270 RLAEEHGKA 278 (346)
T ss_pred EECCccccc
Confidence 999865443
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=3.4e-17 Score=139.24 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=76.7
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
+.+.++++||||||+..++|++||+.|+.||.|.+|+|.+| +||+||.|++.|+|.+||..+ +.+|+|..++|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 45678999999999999999999999999999999999998 589999999999999999999 89999999999
Q ss_pred EEcccCCCCC
Q 025468 92 NLASLGARRP 101 (252)
Q Consensus 92 ~~a~~~~~~~ 101 (252)
.|.++.....
T Consensus 233 sWGKe~~~~~ 242 (321)
T KOG0148|consen 233 SWGKEGDDGI 242 (321)
T ss_pred eccccCCCCC
Confidence 9998765443
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.2e-17 Score=151.36 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=77.4
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.+|++||||||+|.+.++|++||+.+ +..|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999999999999999999999999999999999 888999999999987
Q ss_pred cCC
Q 025468 96 LGA 98 (252)
Q Consensus 96 ~~~ 98 (252)
...
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.72 E-value=5.8e-17 Score=155.87 Aligned_cols=85 Identities=31% Similarity=0.531 Sum_probs=78.2
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
....++|||+||++++|+++|+++|++||+|++|+|+.|. +|++||||||+|++.++|++||+.+ +..++|++|.|++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 3456789999999999999999999999999999999995 8999999999999999999999999 8889999999999
Q ss_pred cccCCCC
Q 025468 94 ASLGARR 100 (252)
Q Consensus 94 a~~~~~~ 100 (252)
++.+..+
T Consensus 361 a~~k~~~ 367 (562)
T TIGR01628 361 AQRKEQR 367 (562)
T ss_pred ccCcHHH
Confidence 9865433
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=4.1e-17 Score=113.23 Aligned_cols=69 Identities=38% Similarity=0.692 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
|||+|||.++|+++|+++|++||.|+.+++..+ .+++.+++|||+|++.++|++||+.+ +..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 48899999999999999999999988 8889999875
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-16 Score=134.40 Aligned_cols=84 Identities=26% Similarity=0.322 Sum_probs=78.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
+-.+.++|-|.||+.+++|++|+++|..||.|.+|.|.+|+.||.+||||||+|.++++|.+||+.| +.-++.--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3447788999999999999999999999999999999999999999999999999999999999999 777888999999
Q ss_pred EcccC
Q 025468 93 LASLG 97 (252)
Q Consensus 93 ~a~~~ 97 (252)
|++.+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=5.7e-17 Score=141.08 Aligned_cols=85 Identities=28% Similarity=0.530 Sum_probs=77.5
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..+..+.++|+|+|||+...|-||+.+|++||.|.+|+|+.+. ..|||||||+|++.+||++|-++| +.+|+||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3445667999999999999999999999999999999999984 568999999999999999999999 8999999999
Q ss_pred EEEcccCC
Q 025468 91 CNLASLGA 98 (252)
Q Consensus 91 v~~a~~~~ 98 (252)
|+.+..+.
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 99998653
No 12
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.66 E-value=4.8e-15 Score=130.10 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=69.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYG--DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.+...-.+|||||-|++|++||.+.+..-| .|.+++++.++.+|++||||+|...+..+.++.++.| .++|+|..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 344556799999999999999999998877 7889999999999999999999999999999999999 8889997644
Q ss_pred EE
Q 025468 91 CN 92 (252)
Q Consensus 91 v~ 92 (252)
|.
T Consensus 156 V~ 157 (498)
T KOG4849|consen 156 VL 157 (498)
T ss_pred ee
Confidence 43
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.9e-15 Score=136.16 Aligned_cols=83 Identities=24% Similarity=0.389 Sum_probs=75.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.-.+++.|||+||..++|||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.+ +++|+|..|+|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 3356789999999999999999999999999999998866 9999999999999999999 899999999999
Q ss_pred EcccCCCCCCCC
Q 025468 93 LASLGARRPRSA 104 (252)
Q Consensus 93 ~a~~~~~~~~~~ 104 (252)
+|+...+++..+
T Consensus 327 LAKP~~k~k~~r 338 (506)
T KOG0117|consen 327 LAKPVDKKKKER 338 (506)
T ss_pred ecCChhhhccch
Confidence 999776655443
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=7.8e-16 Score=107.46 Aligned_cols=69 Identities=35% Similarity=0.604 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 21 VFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
|||+|||+++++++|+++|+.||.|+++++..++. ++.+|+|||+|.+.++|++|++.+ +..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999985 999999999999999999999999 5889999875
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=6.7e-16 Score=147.66 Aligned_cols=81 Identities=14% Similarity=0.352 Sum_probs=76.9
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+.++++++|+++|+.||.|++|+|.+|+.++++||||||+|++.++|.+||+.+ +.+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 45689999999999999999999999999999999999989999999999999999999999999 88899999999988
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 74
No 16
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=9.6e-16 Score=122.99 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=72.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.-.++||||||+..+++.||+.+|..||.|.+|+|.+++ .|||||+|++..+|++|+..| +..|+|.+|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999998764 799999999999999999999 89999999999999
Q ss_pred ccCCC
Q 025468 95 SLGAR 99 (252)
Q Consensus 95 ~~~~~ 99 (252)
.-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 75433
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.4e-16 Score=131.15 Aligned_cols=81 Identities=38% Similarity=0.580 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
-.-|||+.|..+++.|+||+.|.+||+|.+++|++|..|+++||||||.|-++++|++||+.| +..|++|.|+..||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999 8889999999999986
Q ss_pred CC
Q 025468 97 GA 98 (252)
Q Consensus 97 ~~ 98 (252)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=130.32 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcccC
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASLG 97 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~~ 97 (252)
.++|||+||++++||++|+++|+.||+|++|+|++|+. ++|||||+|+++++|++||...+..|.|+.|+|++++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999999863 579999999999999999974489999999999998643
No 19
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.9e-15 Score=129.04 Aligned_cols=85 Identities=33% Similarity=0.563 Sum_probs=79.7
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...+...++|||+-|+.+++|.+|++.|++||.|+.|.|++|+.||++||||||+|+++.+..+|.+.. +.+|+|++|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 344577899999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
|.+...
T Consensus 175 VDvERg 180 (335)
T KOG0113|consen 175 VDVERG 180 (335)
T ss_pred EEeccc
Confidence 988763
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=7.3e-16 Score=138.35 Aligned_cols=89 Identities=31% Similarity=0.492 Sum_probs=78.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-CccCC--e
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PIING--R 87 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~l~G--~ 87 (252)
...|.+.-|+|||.||+.++|+|||++|++||.|.+|.|++||.|+.+||||||+|.++++|.+||..| + ++|-| .
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 445577789999999999999999999999999999999999999999999999999999999999999 4 45666 5
Q ss_pred eeEEEEcccCCCC
Q 025468 88 RANCNLASLGARR 100 (252)
Q Consensus 88 ~l~v~~a~~~~~~ 100 (252)
.|.|++|+.++.|
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 6788888765554
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=1.1e-15 Score=146.12 Aligned_cols=80 Identities=31% Similarity=0.599 Sum_probs=75.4
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+++++|++|+++|++||.|++|+|++|+.+|++||||||+|++.++|++||+.+ +..|+|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999 88899999999865
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=1.9e-15 Score=124.20 Aligned_cols=86 Identities=28% Similarity=0.519 Sum_probs=80.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..+-+...+|-|-||...++-++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++.| +.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 445566789999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|.+|+-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9999844
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.3e-15 Score=127.67 Aligned_cols=91 Identities=26% Similarity=0.425 Sum_probs=82.9
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...++..++|.|.-||.++|+|+||.+|...|+|++|++++||.+|++.|||||.|.++++|++||..+ +..|..+.|+
T Consensus 35 ~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 35 NDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred CCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEE
Confidence 335677789999999999999999999999999999999999999999999999999999999999999 7889999999
Q ss_pred EEEcccCCCCCC
Q 025468 91 CNLASLGARRPR 102 (252)
Q Consensus 91 v~~a~~~~~~~~ 102 (252)
|++|+......+
T Consensus 115 VSyARPSs~~Ik 126 (360)
T KOG0145|consen 115 VSYARPSSDSIK 126 (360)
T ss_pred EEeccCChhhhc
Confidence 999987644433
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=2.4e-15 Score=144.64 Aligned_cols=76 Identities=28% Similarity=0.525 Sum_probs=73.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
+||||||+.++||++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999989999999999999999999999999 666999999999875
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=5.8e-16 Score=139.00 Aligned_cols=85 Identities=27% Similarity=0.432 Sum_probs=76.6
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-CccCC--eeeEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PIING--RRANCN 92 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~l~G--~~l~v~ 92 (252)
+++|||||.|+..+||+|++++|++||.|++|.|++|. .+.+||||||+|+++|-|..||+.+ + .++.| ..|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999998 8999999999999999999999999 3 34655 679999
Q ss_pred EcccCCCCCC
Q 025468 93 LASLGARRPR 102 (252)
Q Consensus 93 ~a~~~~~~~~ 102 (252)
||+.++.+..
T Consensus 202 FADtqkdk~~ 211 (510)
T KOG0144|consen 202 FADTQKDKDG 211 (510)
T ss_pred ecccCCCchH
Confidence 9998766543
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-15 Score=126.44 Aligned_cols=88 Identities=31% Similarity=0.448 Sum_probs=81.4
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
+-..+.++||||+|..+++|.-|...|-.||+|++|++..|-.+++.||||||+|...|+|..||..+ +.+|.||.|+|
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred EEcccCCCC
Q 025468 92 NLASLGARR 100 (252)
Q Consensus 92 ~~a~~~~~~ 100 (252)
.+|++.+-+
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 999865443
No 27
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.6e-15 Score=114.77 Aligned_cols=80 Identities=24% Similarity=0.384 Sum_probs=75.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.++++||||||+..++||+|.++|+++|+|..|.+-.|+.+-...|||||+|.+.++|+.|++.+ +..|+.+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46799999999999999999999999999999999899988888999999999999999999999 88899999999987
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 5
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=1.1e-14 Score=136.49 Aligned_cols=83 Identities=28% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
+...++|||+||+.++++++|+++|++||.|++|+|+.|+.++++||||||+|.+.++|++||+..+..+.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999986699999999999987
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 643
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=6.6e-15 Score=140.49 Aligned_cols=78 Identities=32% Similarity=0.465 Sum_probs=69.4
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC-CeeeEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN-GRRANCN 92 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~-G~~l~v~ 92 (252)
....++|||+||+++++|++|+++|++||.|.+|+|++| .+|++||||||+|.+.|+|++||+.| +.+|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 59999999999999999999999999 66664 6665554
Q ss_pred E
Q 025468 93 L 93 (252)
Q Consensus 93 ~ 93 (252)
+
T Consensus 134 ~ 134 (578)
T TIGR01648 134 I 134 (578)
T ss_pred c
Confidence 3
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=1.5e-14 Score=137.37 Aligned_cols=83 Identities=24% Similarity=0.465 Sum_probs=77.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+..+++++|+++|+.||.|+.+.|++|+.+|+++|||||+|.+.++|++||+.| +..|.|++|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999999 88999999999999
Q ss_pred ccCC
Q 025468 95 SLGA 98 (252)
Q Consensus 95 ~~~~ 98 (252)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 7543
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.7e-14 Score=116.92 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=71.8
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
....++|||||||.++.|.+|+++|.+||.|.+|.|.... ...+||||+|++..+|+.||..- +..++|.+|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4567999999999999999999999999999999884432 34679999999999999999988 8899999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
+....
T Consensus 80 prggr 84 (241)
T KOG0105|consen 80 PRGGR 84 (241)
T ss_pred ccCCC
Confidence 98654
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=2.1e-14 Score=134.67 Aligned_cols=79 Identities=35% Similarity=0.601 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
.++|||+||+.++++++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++||+.| +.+|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999999999999988999999999999999999999999 8899999999999874
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=1e-14 Score=133.06 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=72.1
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCH--HHHHHHHHhc-CCccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP--EAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~--e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
+.....+||||||.+++++++|+.+|+.||.|.+|.|+++ +| ||||||+|.+. +++.+||..| +.++.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3455689999999999999999999999999999999955 66 99999999987 7899999999 8999999999
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
|..|+.
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999984
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=2.3e-14 Score=98.41 Aligned_cols=71 Identities=38% Similarity=0.613 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
+|||+||+.++++++|+++|+.||.|.++++..++ +.++|+|||+|.+.++|++|++.+ +..++|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999886 778999999999999999999998 688999988764
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=2.7e-14 Score=97.59 Aligned_cols=70 Identities=40% Similarity=0.624 Sum_probs=65.3
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 23 VGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 23 VgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
|+||++++++++|+++|+.||.|.++++..++.+++++|+|||+|.+.++|++|++.+ +..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999999999878999999999999999999999999 688999988774
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.3e-14 Score=120.66 Aligned_cols=77 Identities=19% Similarity=0.137 Sum_probs=69.9
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
+..+|||+||++.+||++|+++|+.||+|++|+|++|. +.++||||+|+++++++.||...+..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999984 456899999999999999997669999999999988753
No 37
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1e-15 Score=123.52 Aligned_cols=81 Identities=27% Similarity=0.522 Sum_probs=76.0
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.++.-||||||+.++||.||..+|++||+|++|.+++|+.||+++||||++|++..+..-|+..+ |..|.||.|+|.-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 55678999999999999999999999999999999999999999999999999999999999999 88899999999865
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.54 E-value=1.9e-14 Score=132.79 Aligned_cols=82 Identities=33% Similarity=0.570 Sum_probs=78.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
+.||||||+.+++||+|.++|+..|.|.+++++.|+.||+.|||||++|.+.+++++|++.| +.+++|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999999865
Q ss_pred CCC
Q 025468 98 ARR 100 (252)
Q Consensus 98 ~~~ 100 (252)
+.+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=129.00 Aligned_cols=80 Identities=29% Similarity=0.467 Sum_probs=73.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc-CCeeeEEEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII-NGRRANCNL 93 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l-~G~~l~v~~ 93 (252)
..-+.||||.||.++.|++|..+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+.| +++| .|+.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999 7776 578877766
Q ss_pred cc
Q 025468 94 AS 95 (252)
Q Consensus 94 a~ 95 (252)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 53
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=6.4e-14 Score=119.67 Aligned_cols=78 Identities=35% Similarity=0.635 Sum_probs=75.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
.++|||+||+.++++++|+++|+.||.|..+.|..|+.+++++|||||+|.+.++|.+||+.+ +..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999999999999889999999999999999999999999 699999999999975
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=1.1e-13 Score=132.17 Aligned_cols=75 Identities=24% Similarity=0.425 Sum_probs=68.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKY--GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~--G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
..++|||+||++++|||+|+++|++| |+|++|+++ ++||||+|++.++|++||+.+ +.+|+|++|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999999875 359999999999999999999 8899999999999
Q ss_pred cccCCC
Q 025468 94 ASLGAR 99 (252)
Q Consensus 94 a~~~~~ 99 (252)
++...+
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 986543
No 42
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=106.75 Aligned_cols=91 Identities=22% Similarity=0.347 Sum_probs=83.4
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
...+...+....-|||.++..+.+||+|.+.|..||+|+.|.+-.|+.||-.|||++|+|++.++|++||+.+ +.+|.|
T Consensus 62 ~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 62 MRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 3455666777788999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred eeeEEEEcccCC
Q 025468 87 RRANCNLASLGA 98 (252)
Q Consensus 87 ~~l~v~~a~~~~ 98 (252)
..|.|.|+..+.
T Consensus 142 q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 142 QNVSVDWCFVKG 153 (170)
T ss_pred CceeEEEEEecC
Confidence 999999997543
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=2.7e-13 Score=128.33 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCcCcEEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 15 DTTLTKVFVGGLAW-ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 15 ~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
....++|||+||++ .+|+++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.| +..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 44678999999998 69999999999999999999999874 799999999999999999999 888999999999
Q ss_pred EcccC
Q 025468 93 LASLG 97 (252)
Q Consensus 93 ~a~~~ 97 (252)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98754
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=3.7e-13 Score=92.77 Aligned_cols=73 Identities=37% Similarity=0.603 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+|+|+||+.++++++|+++|+.+|.|.++.+..++. ++.+|+|||+|.+.++|..|++.+ +..++|+++.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998874 477899999999999999999999 6669999998864
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.46 E-value=6.4e-14 Score=124.29 Aligned_cols=83 Identities=39% Similarity=0.727 Sum_probs=78.1
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.+.++||||+|+|+++||.|++.|++||+|.+|.|++|+.++++|||+||+|++.+...++|....+.|+|+.|+++.+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 37899999999999999999999999999999999999999999999999999999999999888889999999999887
Q ss_pred cCC
Q 025468 96 LGA 98 (252)
Q Consensus 96 ~~~ 98 (252)
.+.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 554
No 46
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.45 E-value=9.4e-12 Score=118.86 Aligned_cols=74 Identities=19% Similarity=0.389 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
+++||||+|+.+++|+||+++|+.||+|++|.++.. ||||||++..+.+|++|+.+| +..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999988664 789999999999999999999 8889999999999974
Q ss_pred C
Q 025468 97 G 97 (252)
Q Consensus 97 ~ 97 (252)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.45 E-value=1.6e-13 Score=110.92 Aligned_cols=80 Identities=30% Similarity=0.423 Sum_probs=76.2
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
....+||||||+..++|+.|.++|-+.|.|++++|.+|+.+...+|||||+|.++|+|+-||+-+ ..+|.|++|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999 66799999999998
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.1e-13 Score=117.93 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=81.3
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
+.+..+.|+|||-.||.+..+.||..+|-.||.|++.||..|+.|.++|+||||.|++..+++.||..+ +..|+-+||+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 457788999999999999999999999999999999999999999999999999999999999999999 7889999999
Q ss_pred EEEcccCC
Q 025468 91 CNLASLGA 98 (252)
Q Consensus 91 v~~a~~~~ 98 (252)
|.+.+.+.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99887654
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=96.77 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
....+..+-|||.|||.++|.|+..++|.+||.|..|+|-.++ ..||-|||.|++..+|++|++.| +..+.++.|.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 4455677899999999999999999999999999999997755 35899999999999999999999 8889999999
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
|-+-..
T Consensus 89 vlyyq~ 94 (124)
T KOG0114|consen 89 VLYYQP 94 (124)
T ss_pred EEecCH
Confidence 987653
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=2.1e-13 Score=117.33 Aligned_cols=71 Identities=31% Similarity=0.586 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
.+|||||||.++++.+|+.+|++||+|++|.|+++ ||||..+++..++.||.+| +.+|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 58999999999999999999999999999999876 9999999999999999999 88999999999999865
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.43 E-value=5.9e-13 Score=120.02 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=75.3
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHF-DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
....+.+||.|||.++.|.+|+++| ++.|+|+.|+++.|. +|++||||.|+|+++|.++||++.| .++++||.|+|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3556779999999999999999999 688999999999998 9999999999999999999999999 789999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
-...
T Consensus 120 Ed~d 123 (608)
T KOG4212|consen 120 EDHD 123 (608)
T ss_pred ccCc
Confidence 7754
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=7.4e-13 Score=125.33 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc---CCccCCeeeEEEEc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA---TPIINGRRANCNLA 94 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~---~~~l~G~~l~v~~a 94 (252)
++.|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.+ +..|+|+.|+|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 589999999999999999999999999999999864 579999999999999999864 56799999999998
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.3e-13 Score=116.00 Aligned_cols=85 Identities=26% Similarity=0.419 Sum_probs=76.1
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-CccCC--eeeEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PIING--RRANC 91 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~l~G--~~l~v 91 (252)
.++++||||.|.+.-.|||++.+|..||.|++|.+++.. .|.+|||+||+|.+..||..||..| + ..+-| ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 378999999999999999999999999999999999998 8999999999999999999999998 4 34555 56999
Q ss_pred EEcccCCCCC
Q 025468 92 NLASLGARRP 101 (252)
Q Consensus 92 ~~a~~~~~~~ 101 (252)
++++..++|.
T Consensus 96 K~ADTdkER~ 105 (371)
T KOG0146|consen 96 KFADTDKERT 105 (371)
T ss_pred EeccchHHHH
Confidence 9998776553
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.40 E-value=1.2e-12 Score=91.71 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=55.0
Q ss_pred HHHHHHHhc----cCCCeEEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 32 REALREHFD----KYGDILEAV-IISDKLT--GRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 32 ee~L~~~F~----~~G~I~~v~-i~~d~~t--g~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
+++|+++|+ +||.|.+|. |..++.+ +.+||||||+|.+.++|.+||+.| +..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999998 999999995 7777766 899999999999999999999999 888999998863
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=6e-13 Score=107.62 Aligned_cols=84 Identities=25% Similarity=0.408 Sum_probs=76.8
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEA-VIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...+|||+||+.+++|..|.++|+.||.|.+. +|++|..||+++|||||.|++.|.+.+||+.+ +..++.+++.|+++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 34799999999999999999999999988764 89999999999999999999999999999999 88899999999999
Q ss_pred ccCCCC
Q 025468 95 SLGARR 100 (252)
Q Consensus 95 ~~~~~~ 100 (252)
..+..+
T Consensus 175 ~k~~~k 180 (203)
T KOG0131|consen 175 FKKDTK 180 (203)
T ss_pred EecCCC
Confidence 865544
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.6e-12 Score=119.93 Aligned_cols=82 Identities=41% Similarity=0.620 Sum_probs=74.9
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc------C-CccCCee
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA------T-PIINGRR 88 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~------~-~~l~G~~ 88 (252)
...++|||+||++++|||+|.+.|++||+|..+.|+.++.|+.++|+|||.|.+.+++.+||+.. + ..|+||.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34489999999999999999999999999999999999999999999999999999999999976 2 4589999
Q ss_pred eEEEEcccC
Q 025468 89 ANCNLASLG 97 (252)
Q Consensus 89 l~v~~a~~~ 97 (252)
|.|.++-.+
T Consensus 370 Lkv~~Av~R 378 (678)
T KOG0127|consen 370 LKVTLAVTR 378 (678)
T ss_pred Eeeeeccch
Confidence 999988643
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=7.7e-12 Score=106.35 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=77.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
......-|||-||..+.+|..|.++|..||.|+.|+|++|..|.++||||||++.+-++|..||..+ +..+.++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 3444678999999999999999999999999999999999988999999999999999999999999 888999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
+...
T Consensus 354 FKtn 357 (360)
T KOG0145|consen 354 FKTN 357 (360)
T ss_pred EecC
Confidence 8754
No 58
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=3.1e-12 Score=112.52 Aligned_cols=85 Identities=35% Similarity=0.575 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-Cc
Q 025468 6 SSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PI 83 (252)
Q Consensus 6 s~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~ 83 (252)
+.+.....+|...++|||++|-..++|.+|+++|.+||+|+.++++.. ++||||+|.++++|++|.++. + ..
T Consensus 216 ~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 216 SAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred cccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceee
Confidence 344566789999999999999999999999999999999999999775 469999999999999999998 4 56
Q ss_pred cCCeeeEEEEccc
Q 025468 84 INGRRANCNLASL 96 (252)
Q Consensus 84 l~G~~l~v~~a~~ 96 (252)
|+|++|.|.|.+.
T Consensus 290 I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 290 INGFRLKIKWGRP 302 (377)
T ss_pred ecceEEEEEeCCC
Confidence 9999999999986
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=6.2e-12 Score=84.07 Aligned_cols=55 Identities=35% Similarity=0.573 Sum_probs=49.6
Q ss_pred HHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 35 LREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 35 L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
|+++|++||+|+++++..++ +++|||+|.+.++|++|++.+ +..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997764 689999999999999999999 88899999999985
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.2e-12 Score=115.96 Aligned_cols=81 Identities=33% Similarity=0.564 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
...|||.||+.++|.++|.++|+.||+|++|+|.+|. .| +||| ||+|+++++|++||+.+ |..++|++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3349999999999999999999999999999999998 56 9999 99999999999999999 7789999999998876
Q ss_pred CCCCC
Q 025468 97 GARRP 101 (252)
Q Consensus 97 ~~~~~ 101 (252)
+..|.
T Consensus 153 ~~er~ 157 (369)
T KOG0123|consen 153 KEERE 157 (369)
T ss_pred hhhhc
Confidence 55544
No 61
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.8e-12 Score=116.89 Aligned_cols=79 Identities=29% Similarity=0.466 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
.-+|.|+||||.+.+.+|+.+|+.||.|.+|.|.+.+ .|+-+|||||.|.+..+|.+||+.+ +.+|+||.|-|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 6789999999999999999999999999999999877 6666799999999999999999999 8899999999999964
Q ss_pred C
Q 025468 97 G 97 (252)
Q Consensus 97 ~ 97 (252)
+
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 3
No 62
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.29 E-value=9e-12 Score=110.68 Aligned_cols=85 Identities=31% Similarity=0.555 Sum_probs=79.0
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
..++||||+|+.++++++|+++|++||.|.++.++.|+.+.+.|||+||.|.+++++++++...-++|+|+.++|+.|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999888999999999999986
Q ss_pred CCCCC
Q 025468 97 GARRP 101 (252)
Q Consensus 97 ~~~~~ 101 (252)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 54443
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.27 E-value=6.5e-12 Score=116.15 Aligned_cols=82 Identities=32% Similarity=0.571 Sum_probs=75.8
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
...+||||||..+++|++|+.+|+.||.|+.|.+.+|..||.+||||||+|.+.++|.+|++.+ +.+|-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3344999999999999999999999999999999999889999999999999999999999999 889999999998876
Q ss_pred cCC
Q 025468 96 LGA 98 (252)
Q Consensus 96 ~~~ 98 (252)
.+.
T Consensus 357 ~r~ 359 (549)
T KOG0147|consen 357 ERV 359 (549)
T ss_pred eec
Confidence 543
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=3.8e-12 Score=112.65 Aligned_cols=77 Identities=31% Similarity=0.613 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.|+||||.|.+++.|+.||..|..||.|++|.+..|..|+++|||+||+|+-.|.|+-|++.+ +..++||.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999 78899999988754
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.4e-12 Score=110.06 Aligned_cols=80 Identities=28% Similarity=0.459 Sum_probs=76.4
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...+.|||..|..-+++|||+-+|+.||.|.+|.|++|+.||.+..||||+|++.+++++|.-+| +..|+.++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45688999999999999999999999999999999999999999999999999999999999999 88899999999987
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
.
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 6
No 66
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.24 E-value=6.1e-11 Score=109.14 Aligned_cols=84 Identities=29% Similarity=0.415 Sum_probs=72.4
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.....|||+|||.++++++|+++|..||.|++..|......++..+||||+|.+.++++.||+..-..|++++|.|+..+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34455999999999999999999999999999888765434555699999999999999999998778999999999987
Q ss_pred cCCC
Q 025468 96 LGAR 99 (252)
Q Consensus 96 ~~~~ 99 (252)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6443
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.19 E-value=7.1e-11 Score=109.71 Aligned_cols=81 Identities=27% Similarity=0.437 Sum_probs=75.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.-.++|||.+|...+...||+.+|++||+|+..+|+++..+-..++|+||++++.++|.+||+.| ..+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44679999999999999999999999999999999999878788999999999999999999999 88999999999998
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 73
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=96.43 Aligned_cols=86 Identities=23% Similarity=0.347 Sum_probs=77.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKY-GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
...+....-++|..++..+.+.+|..+|.+| |.++.+++.|++.||.+||||||+|+++|.|+-|-+.| +.-|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3455667789999999999999999999888 78888899899999999999999999999999999999 788999999
Q ss_pred EEEEcccC
Q 025468 90 NCNLASLG 97 (252)
Q Consensus 90 ~v~~a~~~ 97 (252)
.|.+....
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99998755
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=4.1e-11 Score=103.33 Aligned_cols=76 Identities=30% Similarity=0.535 Sum_probs=71.0
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+...++|+||||...++.++|++.|++||.|.+|+|++| |+||.|+-.++|..||+.| +.++.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 567899999999999999999999999999999999776 9999999999999999999 8999999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
+..+.
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 97554
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.14 E-value=8.6e-11 Score=111.66 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=62.4
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccC------------CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKY------------GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~------------G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~ 79 (252)
+..+...++||||||+.++|+++|+++|+.+ +.|..+.+ ++.+|||||+|.+.++|++||+.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3455677899999999999999999999875 23333433 34589999999999999999963
Q ss_pred cCCccCCeeeEEEEcc
Q 025468 80 ATPIINGRRANCNLAS 95 (252)
Q Consensus 80 ~~~~l~G~~l~v~~a~ 95 (252)
.+..|.|+.|+|....
T Consensus 243 ~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCeEeeCceeEecCcc
Confidence 3888999999887544
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.11 E-value=2.7e-10 Score=95.32 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.7
Q ss_pred CcCcEEEEcCCCCCCCHHHHHH----HhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 16 TTLTKVFVGGLAWETPREALRE----HFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~----~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
....+|||.||.+.+..++|++ +|++||+|.+|...+ +.+.||-|||.|++.+.|..|++.| |.-+-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999998 999999999988765 6788999999999999999999999 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
+.+|+..
T Consensus 84 iqyA~s~ 90 (221)
T KOG4206|consen 84 IQYAKSD 90 (221)
T ss_pred eecccCc
Confidence 9999854
No 72
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.09 E-value=8.6e-11 Score=99.67 Aligned_cols=83 Identities=30% Similarity=0.510 Sum_probs=75.8
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.++++.+||+|.|..+++++.|.+.|.+|-.....++++|+.||++|||+||.|.+.+++.+|+.++ +..++.+.|+.+
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 4577889999999999999999999999999999999999999999999999999999999999999 777888887776
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
....
T Consensus 266 kS~w 269 (290)
T KOG0226|consen 266 KSEW 269 (290)
T ss_pred hhhH
Confidence 5543
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=101.79 Aligned_cols=82 Identities=13% Similarity=0.347 Sum_probs=75.6
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
....++|||..+..+++|+||+..|+.||+|++|++.++...+.+||||||+|.+..+...||..+ -..|+|.-|+|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 356789999999999999999999999999999999999978889999999999999999999999 5779999999987
Q ss_pred ccc
Q 025468 94 ASL 96 (252)
Q Consensus 94 a~~ 96 (252)
+-.
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 753
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=5.7e-10 Score=101.00 Aligned_cols=76 Identities=28% Similarity=0.520 Sum_probs=68.9
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
...+.|+|||+|||.++||+.|++-|..||.|+.+.|+. .|++|| .|.|.++++|++||..+ +..|+|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 446778999999999999999999999999999999855 577887 89999999999999999 888999999998
Q ss_pred Ec
Q 025468 93 LA 94 (252)
Q Consensus 93 ~a 94 (252)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2e-10 Score=109.04 Aligned_cols=83 Identities=25% Similarity=0.455 Sum_probs=75.9
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|+|.|||+..+..+++++|..||.|.+|+|......+.+||||||+|-+..+|.+|++.| ...|-||+|+++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 3444689999999999999999999999999999999887667778999999999999999999999 777999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
|++.
T Consensus 689 wA~~ 692 (725)
T KOG0110|consen 689 WAKS 692 (725)
T ss_pred hhcc
Confidence 9984
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.3e-09 Score=93.54 Aligned_cols=84 Identities=26% Similarity=0.418 Sum_probs=76.9
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.+....+|+|.||+..|+++||+++|+.||.++.+-|..|+ +|.+.|.|-|.|...++|++|++.+ +..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 45556899999999999999999999999999999999998 8999999999999999999999999 877999999998
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
+.....
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 876443
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=7.2e-10 Score=105.37 Aligned_cols=80 Identities=33% Similarity=0.542 Sum_probs=70.2
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTG---RSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg---~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
.+.++|||.||.+++|.++|+.+|+..|.|.++.|...+... .|.|||||+|.+.++|++|++.| +.+|+|+.|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 334459999999999999999999999999999887765221 24499999999999999999999 79999999999
Q ss_pred EEcc
Q 025468 92 NLAS 95 (252)
Q Consensus 92 ~~a~ 95 (252)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9998
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8e-10 Score=101.06 Aligned_cols=82 Identities=33% Similarity=0.558 Sum_probs=76.3
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
.....+|||.||+..++++.|+++|+.||+|+.++|+.+. .|+++||+||+|++.++|.+|+..+ +..+.++.|.|.+
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAV 345 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhH
Confidence 4567899999999999999999999999999999999998 8999999999999999999999999 7889999999999
Q ss_pred cccC
Q 025468 94 ASLG 97 (252)
Q Consensus 94 a~~~ 97 (252)
+...
T Consensus 346 ~qr~ 349 (369)
T KOG0123|consen 346 AQRK 349 (369)
T ss_pred Hhhh
Confidence 8743
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=84.96 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=71.6
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC---Ceee
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVII-SDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN---GRRA 89 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~-~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~---G~~l 89 (252)
....++|||.+||.++.-.+|..+|..|-.-+.+.|. +++.....+-+|||+|.+..+|.+|...| |.+++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3458999999999999999999999998766665543 33333345689999999999999999998 55543 6789
Q ss_pred EEEEcccCCCCCCCCC
Q 025468 90 NCNLASLGARRPRSAS 105 (252)
Q Consensus 90 ~v~~a~~~~~~~~~~~ 105 (252)
++++++...+++|.+.
T Consensus 111 hiElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKG 126 (284)
T ss_pred EeeehhcCcccccCCC
Confidence 9999998766655543
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=4e-09 Score=90.49 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=79.2
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCN 92 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~ 92 (252)
..+.+.+.+||+|++.++|.++++..|+.||.|..+.|..|+.++.+|||+||+|.+.+.+++|+...+..|.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 56788999999999999999999999999999999999999988999999999999999999999944888999999999
Q ss_pred EcccC
Q 025468 93 LASLG 97 (252)
Q Consensus 93 ~a~~~ 97 (252)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98765
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.5e-09 Score=90.37 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
..+.+++|||+|+...++||.|.|+|-+-|.|.+|.|..++ .++.| ||||.|+++.++.-|++.+ +..+.++.+.++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 44567899999999999999999999999999999999888 67777 9999999999999999999 777888887777
Q ss_pred Ecc
Q 025468 93 LAS 95 (252)
Q Consensus 93 ~a~ 95 (252)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 654
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.81 E-value=1.7e-08 Score=89.11 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILE--------AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
+...+++|||.|||.++|.+++.++|++||.|.+ |+|-++. .|+.||=|.++|..+|+++-||+.| +..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4566788999999999999999999999998853 8888988 6999999999999999999999999 8889
Q ss_pred CCeeeEEEEcccC
Q 025468 85 NGRRANCNLASLG 97 (252)
Q Consensus 85 ~G~~l~v~~a~~~ 97 (252)
.|+.|+|+.|+..
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999999843
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=1.2e-08 Score=86.04 Aligned_cols=71 Identities=28% Similarity=0.553 Sum_probs=64.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
.+||||+|++.+.+++|+++|..||.|.+|.+ ..||+||+|.+..+|..||..+ +.+|+|.++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 57999999999999999999999999999876 3579999999999999999999 78899998899888743
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.66 E-value=1e-07 Score=87.73 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=67.6
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNL 93 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~ 93 (252)
+..+..-|-+.+|||++|++||.++|+.++ |+++++.++ +|+..|-|||+|+++|++++||++....+..+-|+|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 445566788899999999999999999885 667666665 79999999999999999999999987778888888877
Q ss_pred cc
Q 025468 94 AS 95 (252)
Q Consensus 94 a~ 95 (252)
+.
T Consensus 83 ~~ 84 (510)
T KOG4211|consen 83 AG 84 (510)
T ss_pred cC
Confidence 73
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.1e-08 Score=93.34 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=65.4
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..+...++|+|-||+..|++++|+++|+.||+|++|+- |-..+|.+||+|-|..+|++|++++ +.+|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34667789999999999999999999999999999665 4456899999999999999999999 7889999887
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.59 E-value=3.3e-07 Score=68.07 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcc--CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC----CeeeE
Q 025468 18 LTKVFVGGLAWETPREALREHFDK--YGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN----GRRAN 90 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~----G~~l~ 90 (252)
.++|.|+|||...|.++|.+++.. .|+..-+-+..|..++.+.|||||.|.+.++|.+-.+.. +..+. .+.++
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 378999999999999999999854 367888889999888999999999999999999999988 66654 45567
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|.+|+.+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 7777654
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=88.51 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=72.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKL---TGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~---tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
+|...++|||+||+..++|+.|...|..||.|..++|+.-+. ..+.+-||||.|-++.+|++|++.| +..+.++.+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 467778999999999999999999999999999999987652 2344679999999999999999999 888899999
Q ss_pred EEEEcc
Q 025468 90 NCNLAS 95 (252)
Q Consensus 90 ~v~~a~ 95 (252)
++-|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 998886
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.45 E-value=2.6e-07 Score=82.15 Aligned_cols=86 Identities=27% Similarity=0.260 Sum_probs=77.6
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILE--------AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI 83 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~ 83 (252)
.+.....+|||-+|+..+++++|.++|.++|.|.. |+|-+|+.|++.||-|.|.|++...|+.||+.+ +..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34667789999999999999999999999998853 678889999999999999999999999999999 888
Q ss_pred cCCeeeEEEEcccCC
Q 025468 84 INGRRANCNLASLGA 98 (252)
Q Consensus 84 l~G~~l~v~~a~~~~ 98 (252)
+.+..|+|.+|+...
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999998654
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.40 E-value=8.7e-08 Score=89.14 Aligned_cols=91 Identities=25% Similarity=0.310 Sum_probs=82.1
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRA 89 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l 89 (252)
.-..++.+.++||+-.|...++..+|.++|+.+|.|.+|.|+.|+.++.+||.++|+|.+.+++..||...|..+.|..|
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv 250 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPV 250 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCcee
Confidence 33456677889999999999999999999999999999999999999999999999999999999999777999999999
Q ss_pred EEEEcccCCCC
Q 025468 90 NCNLASLGARR 100 (252)
Q Consensus 90 ~v~~a~~~~~~ 100 (252)
.|......+.+
T Consensus 251 ~vq~sEaeknr 261 (549)
T KOG0147|consen 251 IVQLSEAEKNR 261 (549)
T ss_pred EecccHHHHHH
Confidence 99988765544
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.38 E-value=1.1e-06 Score=80.94 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=67.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILE-AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
.....|-+++||+.|||+||.++|+-.-.+.+ |.++.|. .+++.|-|||.|++.|+|++||......|+-+-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 56788999999999999999999988766655 5566666 788999999999999999999998877788888888776
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=7.5e-07 Score=83.50 Aligned_cols=89 Identities=24% Similarity=0.425 Sum_probs=80.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...-...++|||++|+..+++.+++|+++.||.+...+++.|..+|.+|||||.+|.+......||..+ +..+.+++|.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 344566789999999999999999999999999999999999999999999999999999999999999 7779999999
Q ss_pred EEEcccCCCC
Q 025468 91 CNLASLGARR 100 (252)
Q Consensus 91 v~~a~~~~~~ 100 (252)
|..|......
T Consensus 363 vq~A~~g~~~ 372 (500)
T KOG0120|consen 363 VQRAIVGASN 372 (500)
T ss_pred eehhhccchh
Confidence 9998765444
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.30 E-value=4.3e-06 Score=75.64 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=69.4
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 18 LTKVFVGGLAWE-TPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 18 ~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
...|-|.||-.+ +|.+.|..+|+.||+|.+|+|+.++ |--|.|.+.|...|+-|++.| +++|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678899999776 9999999999999999999999986 457999999999999999999 999999999999998
Q ss_pred cCC
Q 025468 96 LGA 98 (252)
Q Consensus 96 ~~~ 98 (252)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 543
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.27 E-value=4.4e-06 Score=59.85 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=46.7
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 19 TKVFVGGLAWETPREA----LREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~----L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
..|+|.|||.+.+... |+.++.-+| .|.+| +.+.|+|.|.+.|.|++|.+.+ +..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 556666776 66655 2367999999999999999999 778999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9854
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=2.1e-06 Score=72.43 Aligned_cols=73 Identities=27% Similarity=0.442 Sum_probs=64.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
...+.+.|+|-+|..++.+.+|++.|..+|.++...+ .++++||+|++.++|++||+.+ +.++++++|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3677899999999999999999999999999955444 3568999999999999999999 889999999995
Q ss_pred Ec
Q 025468 93 LA 94 (252)
Q Consensus 93 ~a 94 (252)
..
T Consensus 167 ~~ 168 (216)
T KOG0106|consen 167 KN 168 (216)
T ss_pred cc
Confidence 44
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.15 E-value=3.1e-06 Score=74.99 Aligned_cols=85 Identities=29% Similarity=0.471 Sum_probs=73.1
Q ss_pred CCCcCcEEE-EcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEE
Q 025468 14 GDTTLTKVF-VGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lf-VgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~ 92 (252)
......++| |++|+.++++++|++.|..+|.|..+++..+..++.++||++|+|.+.+...+++..-...+.++.+.+.
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLE 259 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccc
Confidence 344455666 9999999999999999999999999999999999999999999999999999998863455888888888
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
..+...
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 876543
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.13 E-value=7e-06 Score=62.05 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=44.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC-----ccCCeeeEEE
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP-----IINGRRANCN 92 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~-----~l~G~~l~v~ 92 (252)
+-|.|.++...++.++|+++|+.||.|..|.+.+.. .-|+|.|.+.++|++|++.+ .. .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 457888999999999999999999999999886643 27999999999999999987 22 3666666666
Q ss_pred Ec
Q 025468 93 LA 94 (252)
Q Consensus 93 ~a 94 (252)
+.
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 54
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.98 E-value=6.9e-06 Score=69.02 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=51.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+.....+|||.||..+++|++|+.+|+.|-....++|.. + .| -..+||+|++.+.|..|+..+
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CC--cceEeecHHHHHHHHHHHHHh
Confidence 344567899999999999999999999998776666632 2 22 358999999999999999886
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=5.4e-05 Score=70.47 Aligned_cols=70 Identities=21% Similarity=0.442 Sum_probs=53.5
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecC-CC--CCccc---EEEEEEcCHHHHHHHHHhcCC
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDK-LT--GRSKG---YGFVTFKEPEAAKKACEDATP 82 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~-~t--g~skG---~aFV~F~~~e~A~~Ai~~~~~ 82 (252)
.....-.++||||+||++++|+.|...|..||.+. |.+.... .. --.+| |+|+.|+++.++.+.|.++-.
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 33445578999999999999999999999999874 4444211 11 12467 999999999999998888733
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=3.2e-05 Score=51.06 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=41.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai 77 (252)
+.|-|.+.+.+.. +++.+.|..||+|+++.+.. .+-+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5677888887755 44555899999999998852 2458999999999999985
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.86 E-value=4.6e-05 Score=67.61 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=62.2
Q ss_pred CcCcEEEEcCCCCCCCHHH----H--HHHhccCCCeEEEEEeecCCCC-CcccE--EEEEEcCHHHHHHHHHhc-CCccC
Q 025468 16 TTLTKVFVGGLAWETPREA----L--REHFDKYGDILEAVIISDKLTG-RSKGY--GFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~----L--~~~F~~~G~I~~v~i~~d~~tg-~skG~--aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
....-+||-+|+..+.+|+ | .++|.+||.|.+|.|-+...+- ...+. .+|+|.+.|+|.+||.+. +..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 4556789999999877766 3 5799999999998875442111 11232 399999999999999999 88899
Q ss_pred CeeeEEEEcc
Q 025468 86 GRRANCNLAS 95 (252)
Q Consensus 86 G~~l~v~~a~ 95 (252)
||.|++.+..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999998875
No 101
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.79 E-value=2.8e-05 Score=70.79 Aligned_cols=73 Identities=26% Similarity=0.277 Sum_probs=59.8
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec---CCC--CC--------cccEEEEEEcCHHHHHHHHHhc
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISD---KLT--GR--------SKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d---~~t--g~--------skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
++...++|.+-||+.+-.-|.|.++|+.+|.|+.|+|..- ..+ +. .+-||+|+|++.+.|.||.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458999999999999888999999999999999999765 211 21 2568999999999999999998
Q ss_pred CCccCC
Q 025468 81 TPIING 86 (252)
Q Consensus 81 ~~~l~G 86 (252)
+.+-++
T Consensus 307 ~~e~~w 312 (484)
T KOG1855|consen 307 NPEQNW 312 (484)
T ss_pred chhhhh
Confidence 544333
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.75 E-value=0.00011 Score=61.87 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=63.1
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC-CeeeEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN-GRRANCN 92 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~-G~~l~v~ 92 (252)
......+|+.|||.+++.+.|..+|++|...++|+++..+ ++.|||+|.+...|..|...+ +..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567889999999999999999999999999999988765 689999999999989998887 55544 5555655
Q ss_pred Ecc
Q 025468 93 LAS 95 (252)
Q Consensus 93 ~a~ 95 (252)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 543
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.69 E-value=0.00015 Score=69.71 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=64.3
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
..+.|-|.|+|++++-|||.++|..|-.+-+-.+++-.+.|+..|-|.|.|++.|+|.+|...+ +..|..+++.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3458889999999999999999999976654333333348999999999999999999999998 7788888887765
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0002 Score=66.81 Aligned_cols=65 Identities=32% Similarity=0.368 Sum_probs=60.0
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFD-KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
...++||||+|+.-++.++|..+|+ -||.|+-+-|-+|.+-+-.||-|-|+|++..+-.+||++-
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 5578999999999999999999997 8999999999999667888999999999999999999874
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00028 Score=52.78 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=52.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEE-EeecCC------CCCcccEEEEEEcCHHHHHHHHHhcCCccCCe-
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAV-IISDKL------TGRSKGYGFVTFKEPEAAKKACEDATPIINGR- 87 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~-i~~d~~------tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~- 87 (252)
...+-|.|-+.|.+ ....+.+.|++||+|.+.. +.++.. .-....+-.|+|+++.+|++||.+.+..++|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 44566788899988 5566777899999998874 111100 11234689999999999999999999889885
Q ss_pred eeEEEEcc
Q 025468 88 RANCNLAS 95 (252)
Q Consensus 88 ~l~v~~a~ 95 (252)
.+.|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45677774
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.60 E-value=0.00042 Score=62.43 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=70.6
Q ss_pred CCCCcCcEEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 13 FGDTTLTKVFVGGLAWE-TPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.+....+.+.|-+|+.. ++-+.|.++|-.||.|++|++++.+ .|-|.|++.|..+.++||..| +..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 45567788999999987 5668899999999999999999986 578999999999999999999 7789999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998744
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0002 Score=67.41 Aligned_cols=80 Identities=26% Similarity=0.327 Sum_probs=61.6
Q ss_pred CCcCcEEEEcCCCCCCCH------HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC-C
Q 025468 15 DTTLTKVFVGGLAWETPR------EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN-G 86 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~te------e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~-G 86 (252)
+.-+..|+|-|+|.--.. .-|.++|+++|+|+.+.+..|. .|.++||.|++|++..+|++|++.+ |+.|+ .
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 345677889998864222 2456789999999999999888 4559999999999999999999998 55543 4
Q ss_pred eeeEEEEcc
Q 025468 87 RRANCNLAS 95 (252)
Q Consensus 87 ~~l~v~~a~ 95 (252)
+++.|..-+
T Consensus 134 Htf~v~~f~ 142 (698)
T KOG2314|consen 134 HTFFVRLFK 142 (698)
T ss_pred ceEEeehhh
Confidence 566666544
No 108
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.44 E-value=0.00074 Score=45.88 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=47.7
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccC---CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKY---GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~---G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.....+|+|.+++ +++.++|+.+|..| .....|+++-|. -|-|.|.+.+.|.+||..|
T Consensus 2 ~~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 2 TIRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred cceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3456789999996 57889999999888 235578888886 4889999999999999864
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.38 E-value=0.0012 Score=59.80 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCC-eEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGD-ILE--AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~--v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
..-|-+++||.+.+.|||.++|..|-. |.. |.++.+. .|+..|-|||+|.+.|+|..|..+. ++.+..|-|+|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 456788999999999999999999873 433 6666665 7899999999999999999999998 6666788888887
Q ss_pred ccc
Q 025468 94 ASL 96 (252)
Q Consensus 94 a~~ 96 (252)
+..
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 753
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.30 E-value=0.00064 Score=61.86 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=61.6
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe-eeEEEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR-RANCNL 93 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~-~l~v~~ 93 (252)
....+|...|+|.+++||+|+++|..-|...+.... -++.+-++.+.+++.|+|..|+..+ ++.+.+. -|+|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 345678899999999999999999887765444322 2335669999999999999999999 7777654 799999
Q ss_pred ccc
Q 025468 94 ASL 96 (252)
Q Consensus 94 a~~ 96 (252)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00098 Score=62.91 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHhccCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 33 EALREHFDKYGDILEAVIISDKLT---GRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 33 e~L~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
|+++.-+++||.|.+|+|.++-.. .-.-|..||+|++.+++++|.++| |.+++|+.+.+.+-..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 345556678999999999887222 223577899999999999999999 8999999999887653
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=0.0048 Score=50.77 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=59.9
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc--cCCeeeEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI--INGRRANC 91 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~--l~G~~l~v 91 (252)
-....+|.|.+||.+-+++||+++..+-|+|....+.+| |++.|+|...|+.+-||.+| ... -.|....+
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 345678999999999999999999999999999988776 48999999999999999998 433 34555444
Q ss_pred EEc
Q 025468 92 NLA 94 (252)
Q Consensus 92 ~~a 94 (252)
.+-
T Consensus 185 rv~ 187 (241)
T KOG0105|consen 185 RVR 187 (241)
T ss_pred Eec
Confidence 443
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.13 E-value=0.002 Score=51.22 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=45.8
Q ss_pred HHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcccCC
Q 025468 34 ALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASLGA 98 (252)
Q Consensus 34 ~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~~~ 98 (252)
+|.+.|+.||++.=+++..+ .-+|+|.+-++|.+|+...+.+++|+.|+|++....+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 66778889999988888665 3899999999999999999999999999999987544
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.12 E-value=0.0016 Score=58.23 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=61.4
Q ss_pred CCcCcEEEEcCC----CCCCC-------HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC
Q 025468 15 DTTLTKVFVGGL----AWETP-------REALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP 82 (252)
Q Consensus 15 ~~~~~~lfVgnL----p~~~t-------ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~ 82 (252)
....++|.|.|| ..+.+ +|+|++--++||.|.+|.|.-.. ..|.+-|.|.+.++|..||+.| |.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCe
Confidence 345678888887 22233 35667778899999999875433 5789999999999999999999 88
Q ss_pred ccCCeeeEEEEcc
Q 025468 83 IINGRRANCNLAS 95 (252)
Q Consensus 83 ~l~G~~l~v~~a~ 95 (252)
.++||.|..++..
T Consensus 338 ~fdgRql~A~i~D 350 (382)
T KOG1548|consen 338 WFDGRQLTASIWD 350 (382)
T ss_pred eecceEEEEEEeC
Confidence 8999999888875
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.09 E-value=0.00097 Score=60.31 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=55.6
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhcc----CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeee
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDK----YGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRA 89 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~----~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l 89 (252)
++.--|-.++||.++++.|+.++|.. -|..++|-+++.. +|+..|-|||.|..+++|+.||.+....|+-|-|
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYI 235 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYI 235 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHH
Confidence 33445667899999999999999952 1355666666655 7888999999999999999999876444444433
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=0.00034 Score=68.72 Aligned_cols=78 Identities=14% Similarity=0.271 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
..+|||.|+++..|+++|+.+++++|.+++++++..+ .|+.||-+||.|.++.++.+++... ...++-+.+.|.+...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5689999999999999999999999999999988888 8999999999999999999998887 4445666667777554
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.02 E-value=0.00028 Score=60.59 Aligned_cols=63 Identities=29% Similarity=0.434 Sum_probs=50.3
Q ss_pred HHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 33 EALREHFD-KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 33 e~L~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
|+|...|+ +||+|++++|-.+. .-.-+|-.+|.|..+|+|++|++.| +..++|+.|.+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444444 89999999775553 3345788999999999999999999 8889999999988763
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.96 E-value=0.0014 Score=64.80 Aligned_cols=82 Identities=32% Similarity=0.492 Sum_probs=69.2
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC--
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING-- 86 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G-- 86 (252)
.++......+.+||++|..|+....|...|..||.|..|.+-. | .-|++|.|++...++.|++.+ +..|++
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 3444667788999999999999999999999999999887622 2 349999999999999999999 777776
Q ss_pred eeeEEEEcccC
Q 025468 87 RRANCNLASLG 97 (252)
Q Consensus 87 ~~l~v~~a~~~ 97 (252)
++|+|.++..-
T Consensus 521 ~r~rvdla~~~ 531 (975)
T KOG0112|consen 521 RRLRVDLASPP 531 (975)
T ss_pred cccccccccCC
Confidence 67899998754
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.90 E-value=0.00052 Score=62.73 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=59.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-CccCCeeeEEEEccc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PIINGRRANCNLASL 96 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~l~G~~l~v~~a~~ 96 (252)
.++||+||...++-.||+.+|...-.-.+-.++. ..||+||...+...|.+||+.+ + .++.|+++.|+..-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999996541100111111 2589999999999999999999 3 569999999998876
Q ss_pred CCCCCC
Q 025468 97 GARRPR 102 (252)
Q Consensus 97 ~~~~~~ 102 (252)
++.+.+
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 655544
No 120
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.83 E-value=0.001 Score=57.07 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=59.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC--------CCccc----EEEEEEcCHHHHHHHHHhc-CCc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLT--------GRSKG----YGFVTFKEPEAAKKACEDA-TPI 83 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t--------g~skG----~aFV~F~~~e~A~~Ai~~~-~~~ 83 (252)
..-.||+++||..++-..|+++|+.||+|-.|-|-.+..+ |.++. -|.|+|.+...|.++.+.| +..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988776544 33332 3779999999999999998 666
Q ss_pred cCCee
Q 025468 84 INGRR 88 (252)
Q Consensus 84 l~G~~ 88 (252)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 87765
No 121
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.80 E-value=0.0087 Score=43.00 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=42.7
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDAT 81 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~ 81 (252)
.+...+|. +|.++...||.++|+.||.|. |.++.|. -|||...+++.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34556665 999999999999999999984 6666664 59999999999998888763
No 122
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=0.0016 Score=56.06 Aligned_cols=61 Identities=26% Similarity=0.445 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..|+|.||..-++.|.|++.|+.||.|+...+..|- .++..+-++|.|...-+|.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 789999999999999999999999999988777775 6888889999999999999999987
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.75 E-value=0.002 Score=58.42 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=64.6
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLT---GRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNL 93 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~ 93 (252)
....|-|.||...+|.++++.+|.-.|+|.++.|..+... ......|||.|.+...+..|-...+.++-++-|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3458999999999999999999999999999998764311 2345689999999999998877778888888777765
Q ss_pred cc
Q 025468 94 AS 95 (252)
Q Consensus 94 a~ 95 (252)
.-
T Consensus 86 ~~ 87 (479)
T KOG4676|consen 86 YG 87 (479)
T ss_pred cC
Confidence 53
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=9.9e-05 Score=72.32 Aligned_cols=71 Identities=31% Similarity=0.397 Sum_probs=60.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCC
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIING 86 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G 86 (252)
.+..++||+||+..+.+++|...|..+|.|+.+.|..-+++++.||.|+|+|.+.+++.+||......+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 44568999999999999999999999999988877655667889999999999999999999887444444
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.58 E-value=0.0013 Score=63.58 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=65.3
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILE-AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
..-...|||..||..+++.++.++|+..-.|++ |.|.+.. +++.++.|||.|..++++.+|+... .+.++.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344578999999999999999999998888877 7776666 7888999999999988888888776 666777777776
Q ss_pred Ec
Q 025468 93 LA 94 (252)
Q Consensus 93 ~a 94 (252)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 43
No 126
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.43 E-value=0.02 Score=45.27 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=60.4
Q ss_pred CCCCcCcEEEEcCCCCCCCH-HHHHH---HhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCee
Q 025468 13 FGDTTLTKVFVGGLAWETPR-EALRE---HFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRR 88 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~te-e~L~~---~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~ 88 (252)
..+....+|.|+=|..++.- |||+. .++.||.|.+|.+ .| |--|.|+|+|..+|-+|+.++....-|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cG--rqsavVvF~d~~SAC~Av~Af~s~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CG--RQSAVVVFKDITSACKAVSAFQSRAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cC--CceEEEEehhhHHHHHHHHhhcCCCCCce
Confidence 34666788989877777543 56555 4578999999976 23 33699999999999999999977888999
Q ss_pred eEEEEccc
Q 025468 89 ANCNLASL 96 (252)
Q Consensus 89 l~v~~a~~ 96 (252)
+.|.|-..
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 99998753
No 127
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.36 E-value=0.007 Score=57.63 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc---cCCee
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFD-KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI---INGRR 88 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~---l~G~~ 88 (252)
-....+.|+|.||-.-.|.-+|++++. ..|.|++.+| |+ -|..|||.|.+.++|...+..| |.. -|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678999999999999999999997 6777777754 33 3568999999999999999999 654 46788
Q ss_pred eEEEEccc
Q 025468 89 ANCNLASL 96 (252)
Q Consensus 89 l~v~~a~~ 96 (252)
|.+.+...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888763
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.36 E-value=0.0089 Score=52.45 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=50.7
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCccc-EEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 33 EALREHFDKYGDILEAVIISDKLTGRSKG-YGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 33 e~L~~~F~~~G~I~~v~i~~d~~tg~skG-~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
+++++..++||.|..|.|..+...-..+. --||+|+..++|.+|+..+ +..++|+.++.-+-...
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 46778889999999999988864433333 3799999999999999999 77788887766555433
No 129
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.13 E-value=0.2 Score=45.55 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC--CeeeEEEEcccCC
Q 025468 25 GLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN--GRRANCNLASLGA 98 (252)
Q Consensus 25 nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~--G~~l~v~~a~~~~ 98 (252)
|-=..+|-+-|..+....|+|.+|.|++. +|. -|.|+|++.+.|++|.+.| +..|- --.|+|++|+..+
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 33446899999999999999999999875 444 6999999999999999998 65543 3678999998643
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.01 E-value=0.0016 Score=64.39 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=66.1
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..+...+++||+|||+..+++.+|+..|..+|.|++|.|-+-+ -+.-.-|+||.|.+-+.+-+|+..+ +..|....++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 4455778899999999999999999999999999999886654 3444569999999999999999888 5555444455
Q ss_pred EEEc
Q 025468 91 CNLA 94 (252)
Q Consensus 91 v~~a 94 (252)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 5554
No 131
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.96 E-value=0.014 Score=55.34 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=61.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhc--cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc---CCccCCeeeE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFD--KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA---TPIINGRRAN 90 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~--~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~---~~~l~G~~l~ 90 (252)
.+.|-|.++-|++.+-+|+++.+|+ .+-.+.+|++..+. -=||+|++.+||++|.+.| -+++-|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4567889999999999999999995 57889999987664 3699999999999999988 3558899887
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
.++...
T Consensus 246 ARIKai 251 (684)
T KOG2591|consen 246 ARIKAI 251 (684)
T ss_pred hhhhhh
Confidence 666553
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.91 E-value=0.0026 Score=56.64 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=58.5
Q ss_pred cCcEEEEcCCCCCCCHHHH---HHHhccCCCeEEEEEeecCC--CCCc-ccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 17 TLTKVFVGGLAWETPREAL---REHFDKYGDILEAVIISDKL--TGRS-KGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L---~~~F~~~G~I~~v~i~~d~~--tg~s-kG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
..+.+||-+|+..+.+|++ .+.|.+||.|.+|.+.++.. .+.. -.-++|+|++.|+|.+||... +..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3467888899888766554 35889999999998888762 1111 123799999999999999998 777888776
Q ss_pred EEEEcc
Q 025468 90 NCNLAS 95 (252)
Q Consensus 90 ~v~~a~ 95 (252)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 665554
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.27 E-value=0.019 Score=50.98 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=68.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDAT-PIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~l~G~~l~v~~a 94 (252)
...+++|++++.+.+.++++..++...|.+..+..........++|++.|.|+..+.+..||.... ..+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988888777766688899999999999999999999884 5666776666665
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
...
T Consensus 166 ~~~ 168 (285)
T KOG4210|consen 166 TRR 168 (285)
T ss_pred ccc
Confidence 543
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=0.093 Score=46.37 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=52.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCee-eEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRR-ANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~-l~v~~a~~ 96 (252)
+.=|-|-+++..- -..|..+|++||+|++..-. ..-.+-.|.|.++.+|+|||.+.+..|+|.. |-|+.+..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 3344455777663 34566789999999886532 2334999999999999999999988888865 45666543
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.17 E-value=0.12 Score=36.28 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=38.3
Q ss_pred EEEEc-CCCCCCCHHHHHHHhccCC-----CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 20 KVFVG-GLAWETPREALREHFDKYG-----DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 20 ~lfVg-nLp~~~tee~L~~~F~~~G-----~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
++||. +--..++..+|..++..-+ +|-+|+|..+ |.||+... +.|+++++.+ +..++|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 2234588899999886654 4566777443 89998876 4788899998 788999999998
Q ss_pred Ec
Q 025468 93 LA 94 (252)
Q Consensus 93 ~a 94 (252)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.73 E-value=0.36 Score=36.67 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=48.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKY-GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
.....+-+...+..++.++|..+.+.+ ..|+.++|++|. ..++-.+.++|.+.++|++-.+.. |+.+
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 334455555666677777887666665 467889999985 335668899999999999999886 4443
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.33 E-value=0.024 Score=52.81 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=59.4
Q ss_pred CcCcEEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWET-PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~-tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
.+.+.|-+.-.+... |.++|...|.+||+|+.|.|-.. ---|.|+|.+..+|-+|-...+.+|+++.|+|.|-
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 344455555555554 45899999999999999987443 22589999999999888777788999999999998
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
+..
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 863
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.74 E-value=0.085 Score=43.52 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=47.8
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhcc-CCCe---EEEEEeecC-CCCC-cccEEEEEEcCHHHHHHHHHhc-CCccCC-
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDK-YGDI---LEAVIISDK-LTGR-SKGYGFVTFKEPEAAKKACEDA-TPIING- 86 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~-~G~I---~~v~i~~d~-~tg~-skG~aFV~F~~~e~A~~Ai~~~-~~~l~G- 86 (252)
.....+|-|++||.++||+++.+.++. +++. ..+.-..+. .... .-.-|+|.|.+.+++..-+..+ ++.+.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999997776 6665 333311221 1111 2356999999999998888887 544322
Q ss_pred ----eeeEEEEccc
Q 025468 87 ----RRANCNLASL 96 (252)
Q Consensus 87 ----~~l~v~~a~~ 96 (252)
.+..|++|--
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 3456676653
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=0.15 Score=48.34 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=39.4
Q ss_pred CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc---cCCe-eeEEEEcccCC
Q 025468 43 GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI---INGR-RANCNLASLGA 98 (252)
Q Consensus 43 G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~---l~G~-~l~v~~a~~~~ 98 (252)
|+-..+.+..|-.+....|||||.|.+.+++.++.++. |+. ++++ .+.+.+|+.+.
T Consensus 414 gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 414 GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 44444556666656667899999999999999999998 543 4443 34666666543
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.65 E-value=0.066 Score=51.80 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=61.4
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
....++||+|+...+.++-++.++..+|.|..++.+. |||..|...+-..+|+..+ ...++|.++.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4567899999999999999999999999998776533 9999999999999999998 66788998877775
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
+
T Consensus 109 ~ 109 (668)
T KOG2253|consen 109 E 109 (668)
T ss_pred h
Confidence 3
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.37 E-value=0.63 Score=32.00 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=40.3
Q ss_pred CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 29 ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 29 ~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
.++-++|+..+.+|+-. +|..|+ + | =||.|.+.++|+++.+.. +..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46789999999999743 344565 3 2 379999999999999997 66666666554
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.57 E-value=0.11 Score=51.62 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=59.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc--cCCeeeEEEEccc
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI--INGRRANCNLASL 96 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~--l~G~~l~v~~a~~ 96 (252)
+.++-|..-+.+-..|..+|++||.|.+++-++|- ..+.|+|.+.|+|..|++.+ |++ +.|-..+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44555667788888999999999999999988875 37999999999999999999 665 5677888888874
No 143
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.53 E-value=0.62 Score=38.70 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=42.6
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC---CccCCeeeEEEEccc
Q 025468 31 PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDAT---PIINGRRANCNLASL 96 (252)
Q Consensus 31 tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~l~G~~l~v~~a~~ 96 (252)
..+.|+++|..++.+....+++. -+=..|.|.+.++|.+|...+. ..+.|..|+|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45889999999999888777664 2357899999999999999875 458999999998853
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=88.05 E-value=0.12 Score=43.81 Aligned_cols=67 Identities=28% Similarity=0.339 Sum_probs=57.2
Q ss_pred CCCCcCcEEEEcC----CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 13 FGDTTLTKVFVGG----LAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 13 ~~~~~~~~lfVgn----Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.+++...++++|+ |+..+++|.+.+.|+.-|.|+.+++.++. .|+.+.++||++....+.-.++...
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhh
Confidence 3566778999999 99999999999999999999999999988 5889999999987766666666653
No 145
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=86.78 E-value=2.3 Score=30.68 Aligned_cols=59 Identities=7% Similarity=0.151 Sum_probs=44.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 025468 20 KVFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDAT 81 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~ 81 (252)
+-|+-.++.+.++.+|++.++. || .|.+|+.+.-+ .+.. =|||++...++|.+....+|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~K--KA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGEK--KAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCcE--EEEEEeCCCCcHHHHHHhhc
Confidence 3455567899999999999976 67 68888776655 2322 49999999999888766643
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=2.5 Score=40.74 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=59.7
Q ss_pred CCcCcEEEEcCCCCC-CCHHHHHHHhccC----CCeEEEEEeecC----------CCCC---------------------
Q 025468 15 DTTLTKVFVGGLAWE-TPREALREHFDKY----GDILEAVIISDK----------LTGR--------------------- 58 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~-~tee~L~~~F~~~----G~I~~v~i~~d~----------~tg~--------------------- 58 (252)
+...++|-|-|++|+ +..++|..+|+.| |.|.+|.|-... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999998 8889999999887 689999874321 1111
Q ss_pred ---------------cc-cEEEEEEcCHHHHHHHHHhc-CCccC--CeeeEEEEc
Q 025468 59 ---------------SK-GYGFVTFKEPEAAKKACEDA-TPIIN--GRRANCNLA 94 (252)
Q Consensus 59 ---------------sk-G~aFV~F~~~e~A~~Ai~~~-~~~l~--G~~l~v~~a 94 (252)
-| =||.|+|.+.+.|.+.-+.| |.++. +..|.+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11 37899999999999999999 77665 455555554
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=2.5 Score=39.06 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~ 79 (252)
+..-.+.|-|-+++.....|||...|+.|+ .--+|+++.|. .+|-.|++...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 444567888999999999999999999997 44577888876 799999999999999876
No 148
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.84 E-value=4.2 Score=28.83 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=43.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 025468 20 KVFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDAT 81 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~ 81 (252)
+-|+-.++.+.+..+|++.++. |+ .|.+|+.+.-+ .+.. =|||++..-++|.+.-..+|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~K--KA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGEK--KAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCce--EEEEEECCCCcHHHHHHhhc
Confidence 4566678999999999999976 67 67777766654 2222 49999998888887666543
No 149
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=82.77 E-value=2.5 Score=29.13 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
++|++.|...| .|.++.-+..+.+.+.-..-||+.+...+..+++. =..|++.+++|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCCC
Confidence 57788888888 78888877777566666788888876654332221 1348888888887653
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.59 E-value=0.19 Score=45.90 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
.++|+|.+|...+...++-+.|..+|+|....+... -..-+|-|+|....+...|+...+.++.-....+.+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAII 223 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhc
Confidence 478999999999999999999999999987665332 2345777999999999999988776655433333333
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.95 E-value=6.9 Score=36.74 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=53.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC
Q 025468 18 LTKVFVGGLAWETPREALREHFDKY-GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
.+.|+|=.+|..++-.||-.+...| -.|.+++|++|.. -.+=...|+|.+.++|..--+.+ |..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7889999999999999999988655 4799999999752 22346789999999999999987 54443
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=79.54 E-value=0.18 Score=46.55 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=61.9
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEE-eecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVI-ISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i-~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
..+++-|.|++....+|.|..++..||.++.|.. ..|.. .-..-|+|.+.+.++.||+.+ +..+....++|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4577899999999999999999999999999865 33332 223457899999999999999 77788888888876
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
-.
T Consensus 155 Pd 156 (584)
T KOG2193|consen 155 PD 156 (584)
T ss_pred ch
Confidence 53
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.16 E-value=4.4 Score=35.83 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=36.3
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcccEEEEEEcCH
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDI-LEAVIISDKLTGRSKGYGFVTFKEP 70 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~~~ 70 (252)
.-.+-|+++||+.++.-.||+..+.+.+.+ .++.+ . | .+|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k---g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K---G-HFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee--e---c-CCcceeEecCCc
Confidence 334569999999999999999999887643 23333 1 2 467799999765
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=76.97 E-value=3.5 Score=28.57 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=41.9
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
++|++.|.+.| .+..+..+..+.++..-..-||+.....+-...+ + -..|+|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il-~-ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL-N-IKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE-e-ehhhCCeeEEEecCc
Confidence 46788888888 7888888888766666677788877654433311 1 234888888877664
No 155
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=71.32 E-value=11 Score=30.03 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=39.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 025468 20 KVFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~ 79 (252)
+.|+-.++...+..+|++.++. |+ +|.+|..+.-+ .|.. =|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCce--EEEEEECCCCcHHHHHHh
Confidence 4455567889999999999976 66 67777665544 2333 389999877765554444
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=70.69 E-value=6.4 Score=32.70 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=44.0
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHH
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEA 72 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~ 72 (252)
.........+++++++..++++++...|..+|.+....+...........+.++.+.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKD 279 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHh
Confidence 4456778899999999999999999999999999777776655333333444444433333
No 157
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.65 E-value=71 Score=30.29 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=8.2
Q ss_pred HHHHHhccCCCeEE
Q 025468 34 ALREHFDKYGDILE 47 (252)
Q Consensus 34 ~L~~~F~~~G~I~~ 47 (252)
-|-.+|+-||.|..
T Consensus 246 ~lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 246 ALGQIFEIFGPVKN 259 (483)
T ss_pred cchhhhhhhcccCC
Confidence 35566666776543
No 158
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.33 E-value=9.8 Score=33.79 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=63.1
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCC-------CCCcccEEEEEEcCHHHHHHH----HH--
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKL-------TGRSKGYGFVTFKEPEAAKKA----CE-- 78 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~-------tg~skG~aFV~F~~~e~A~~A----i~-- 78 (252)
..++-..|.|.+.||..+++--.+-..|.+||.|++|.++.+.. .-+......+.|-+++.+..- ++
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 34556678899999999999888888999999999999988751 122345678889888775432 22
Q ss_pred -hcCCccCCeeeEEEEccc
Q 025468 79 -DATPIINGRRANCNLASL 96 (252)
Q Consensus 79 -~~~~~l~G~~l~v~~a~~ 96 (252)
+....+....|.+.+...
T Consensus 89 sEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHhcCCcceeEEEEEE
Confidence 334568888888887764
No 159
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=68.02 E-value=1.3 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=22.7
Q ss_pred cccEEEEEEcC-HHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 59 SKGYGFVTFKE-PEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 59 skG~aFV~F~~-~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.+|||||.-.+ .++.--.-+.++.-++|.++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 58999999887 22222223445566899999998887
No 160
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.14 E-value=13 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=14.9
Q ss_pred HHHHHHhccCCCeEEEEE
Q 025468 33 EALREHFDKYGDILEAVI 50 (252)
Q Consensus 33 e~L~~~F~~~G~I~~v~i 50 (252)
++||++|+..|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976544
No 161
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.79 E-value=5.6 Score=32.85 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=49.1
Q ss_pred CcEEEEcCCCCCCCH-----HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe-eeE
Q 025468 18 LTKVFVGGLAWETPR-----EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR-RAN 90 (252)
Q Consensus 18 ~~~lfVgnLp~~~te-----e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~-~l~ 90 (252)
.+++++.+|..++-. .+.+++|..+-+.....+++ +++..-|.|.+.+.|.+|...+ ...++|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 455777777766433 23445555555444434433 3456678899999999999999 7889988 777
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
+-++..
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777764
No 162
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.15 E-value=36 Score=22.10 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=41.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCH----HHHHHHHHhcCC
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP----EAAKKACEDATP 82 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~----e~A~~Ai~~~~~ 82 (252)
++.|.|+.=.--...+++.+.+.-.|.++.+-.. .+-.-|+|... ++..++|+.+|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 4667777766667889999999988999888544 24577888743 677777777653
No 163
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.77 E-value=1.6 Score=40.80 Aligned_cols=77 Identities=5% Similarity=-0.149 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
.+.|+..|+...++++|.-+|..+|.|..+.+.+--..+-.+-.+||+... +++..+|..+ -..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999888776555455566788888775 4577788877 6778898999998874
No 164
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=59.82 E-value=20 Score=26.66 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=26.3
Q ss_pred CCCHHHHHHHh-ccCCCeEEEEEeecC----CCCCcccEEEEEEcCHHHHHH
Q 025468 29 ETPREALREHF-DKYGDILEAVIISDK----LTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 29 ~~tee~L~~~F-~~~G~I~~v~i~~d~----~tg~skG~aFV~F~~~e~A~~ 75 (252)
..+.++|++-+ +.++.=.+..|+..- ..|++.|||.| |+|.+.|++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888777 456633333333322 23556677766 677666554
No 165
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.10 E-value=50 Score=21.88 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEc--CHHHHHHHHHhcCCc
Q 025468 32 REALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFK--EPEAAKKACEDATPI 83 (252)
Q Consensus 32 ee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~--~~e~A~~Ai~~~~~~ 83 (252)
-.+|.++|+++| .|.++...... ....+..+|.++ +.+++.++|++.+.+
T Consensus 15 l~~i~~~l~~~~inI~~i~~~~~~--~~~~~~v~i~v~~~~~~~~~~~L~~~G~~ 67 (72)
T cd04883 15 LADIAAIFKDRGVNIVSVLVYPSK--EEDNKILVFRVQTMNPRPIIEDLRRAGYE 67 (72)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccC--CCCeEEEEEEEecCCHHHHHHHHHHCCCe
Confidence 356778888887 67777654432 222334455554 556667777665543
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=57.67 E-value=38 Score=30.62 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEE--EEEcCHHHHHHHHHhcCC
Q 025468 26 LAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGF--VTFKEPEAAKKACEDATP 82 (252)
Q Consensus 26 Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aF--V~F~~~e~A~~Ai~~~~~ 82 (252)
|--..+++.|+++.++.+ +..++|.+....|+.- |.. =.|.++++|++||+.|-.
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 333456888988888775 4556666544344432 332 268999999999999843
No 167
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.16 E-value=21 Score=27.32 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=26.1
Q ss_pred CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCH-HHHHHHH
Q 025468 30 TPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP-EAAKKAC 77 (252)
Q Consensus 30 ~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~-e~A~~Ai 77 (252)
.+.++|++.|+.|..++ ++.+.++ ....|++.|+|.+- .-...|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 45588999999998874 6666665 24689999999743 3333443
No 168
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=55.90 E-value=7.6 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHh
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHF 39 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F 39 (252)
.+...++|-|.||+..++||+|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34567899999999999999999854
No 169
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=55.08 E-value=36 Score=26.18 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhcc-CCCeEEEEE----eecCCCCCcccEEEEEEcCHHHHHH
Q 025468 29 ETPREALREHFDK-YGDILEAVI----ISDKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 29 ~~tee~L~~~F~~-~G~I~~v~i----~~d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
+++++||+|-+++ |-.-.++.+ -..-..|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788888877754 433223222 223345788899987 777776654
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=54.24 E-value=94 Score=24.11 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=44.7
Q ss_pred cEEEEcCCCCC---CCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCC-eeeEEEE
Q 025468 19 TKVFVGGLAWE---TPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIING-RRANCNL 93 (252)
Q Consensus 19 ~~lfVgnLp~~---~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G-~~l~v~~ 93 (252)
-.|-|+..... .+-+.+++.+++-| .+++++.-.| -..|.|++.|+..+|.+.+...+.. ..+.+.+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 44555554222 56678888888877 5666655322 4789999999999998888555543 3444444
Q ss_pred c
Q 025468 94 A 94 (252)
Q Consensus 94 a 94 (252)
+
T Consensus 108 ~ 108 (127)
T PRK10629 108 D 108 (127)
T ss_pred C
Confidence 4
No 171
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=54.20 E-value=40 Score=23.17 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=29.2
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCc-ccEEEEEEcCHHHHHHHHHhc
Q 025468 33 EALREHFDKYGDILEAVIISDKLTGRS-KGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 33 e~L~~~F~~~G~I~~v~i~~d~~tg~s-kG~aFV~F~~~e~A~~Ai~~~ 80 (252)
++|++.++++| +...++ +|.. -++.|+.+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 444444 3332 458888888999988888775
No 172
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=51.04 E-value=18 Score=32.21 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=23.2
Q ss_pred EEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 63 GFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 63 aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
|||+|+++++|+.|++.+.. .+.++++++.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 79999999999999997622 123445666664
No 173
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.10 E-value=22 Score=25.90 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=25.6
Q ss_pred EEEEEcCHHHHHHHHHhcC--CccCCeeeEEEEcc
Q 025468 63 GFVTFKEPEAAKKACEDAT--PIINGRRANCNLAS 95 (252)
Q Consensus 63 aFV~F~~~e~A~~Ai~~~~--~~l~G~~l~v~~a~ 95 (252)
|.|+|.+.+-|++.|+.-. ..+++..+.|+...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe
Confidence 6799999999999998763 34777777776654
No 174
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.21 E-value=12 Score=22.47 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhccCCC
Q 025468 28 WETPREALREHFDKYGD 44 (252)
Q Consensus 28 ~~~tee~L~~~F~~~G~ 44 (252)
.++++++|++.|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999987643
No 175
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.18 E-value=81 Score=25.29 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=40.8
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccC---CCeEEEEEeecCCC---------CCccc-EEEEEEcCHHH
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKY---GDILEAVIISDKLT---------GRSKG-YGFVTFKEPEA 72 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~---G~I~~v~i~~d~~t---------g~skG-~aFV~F~~~e~ 72 (252)
+..+|++.-+...++|++.++..++= ++|++|.+-+.+.. ...|. |-+|.|++-+.
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 34799999999999999999998754 57777877665421 12234 88888887554
No 176
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.44 E-value=16 Score=32.36 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=26.9
Q ss_pred CcCcEEEEcCCCC------------CCCHHHHHHHhccCCCeEEEEEe
Q 025468 16 TTLTKVFVGGLAW------------ETPREALREHFDKYGDILEAVII 51 (252)
Q Consensus 16 ~~~~~lfVgnLp~------------~~tee~L~~~F~~~G~I~~v~i~ 51 (252)
+...+|++.+||- --+|+-|+..|+.||+|..|.|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3455677777653 24678899999999999988764
No 177
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=48.23 E-value=8.5 Score=35.62 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=52.0
Q ss_pred CCcCcEEEEcCCCCCCCHH--------HHHHHhcc--CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 025468 15 DTTLTKVFVGGLAWETPRE--------ALREHFDK--YGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee--------~L~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~ 78 (252)
+...+.+|+.++..+.+.+ ++...|.. .+.+..+...+|.....++|-.|++|+..+.+++.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445678888887776555 89999988 6788888888877677788999999999999999984
No 178
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=47.75 E-value=79 Score=20.80 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=36.1
Q ss_pred EEEEcCCCCCCC-HHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 025468 20 KVFVGGLAWETP-REALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATP 82 (252)
Q Consensus 20 ~lfVgnLp~~~t-ee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 82 (252)
+|.| -++...- =.++-++|.+.| .|+.+.+.... . ++.--+.+.+.+.+.++|++.+.
T Consensus 3 ri~v-~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 3 QLSV-FLENKPGRLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred EEEE-EEcCCCChHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCCC
Confidence 4444 2333332 267778887777 78888765432 2 46666667777788888877543
No 179
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=45.51 E-value=40 Score=26.46 Aligned_cols=46 Identities=17% Similarity=0.459 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhc-cCC-CeEEEEEee----cCCCCCcccEEEEEEcCHHHHHH
Q 025468 29 ETPREALREHFD-KYG-DILEAVIIS----DKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 29 ~~tee~L~~~F~-~~G-~I~~v~i~~----d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
..+.++|++-+. .|+ .=.++.|+. .-..|++.|||.| |+|.|.+.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 577888888774 566 222222222 2233566777766 666665543
No 180
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.21 E-value=50 Score=23.88 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=33.2
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK 68 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~ 68 (252)
-..-||||+++..+.|.-.+.+.+..++-.-+-+-.+. ...||.|-+.-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 34569999999998887777766655544444444433 26789998773
No 181
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.21 E-value=2.4e+02 Score=27.96 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=48.0
Q ss_pred CcEEEEc-CCCCCCCHHHHHHHhccCCCe-----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 18 LTKVFVG-GLAWETPREALREHFDKYGDI-----LEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 18 ~~~lfVg-nLp~~~tee~L~~~F~~~G~I-----~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..++||. +=-..++..+|-.++..-+.| -.|+|.. .|.||+... +.+.+.++.+ +..+.|++|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 3456653 223457888888887655544 3455533 389998865 4578888888 7789999999
Q ss_pred EEEcc
Q 025468 91 CNLAS 95 (252)
Q Consensus 91 v~~a~ 95 (252)
|+.++
T Consensus 557 ~~~~~ 561 (629)
T PRK11634 557 MQLLG 561 (629)
T ss_pred EEECC
Confidence 99875
No 182
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=40.30 E-value=89 Score=22.35 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhc-cCCC----eEEEEEeecCCCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHFD-KYGD----ILEAVIISDKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F~-~~G~----I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
...+.++|++.+. .++. |.=..|.+.-..+.+.|||.| |++.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 3567788877774 4442 222234444334556777776 677666553
No 183
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=40.28 E-value=1.2e+02 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.128 Sum_probs=36.5
Q ss_pred CHHHHHHHhc----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 31 PREALREHFD----KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 31 tee~L~~~F~----~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+.-+|..+|. .+|.|+++++...+ .-+.+...++.|.+.+++.+++..+
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p-~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLP-KPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEc-CCcceEEEEEECCCHHHHHHHHHHH
Confidence 3457777774 57889998776655 2334567788999999999999876
No 184
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.97 E-value=5.4 Score=38.34 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=47.4
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..++||+.|+..+++-++|..+.+.+--+..+.+..+....+.+.++.|+|+---....||.++
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aL 293 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWAL 293 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHh
Confidence 4578999999999999999999988877666655444333445678899998655555555554
No 185
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=37.98 E-value=52 Score=24.37 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=30.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCH
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEP 70 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~ 70 (252)
..-||||+++..+.|.--+.+-+.+++-.-+-+-.+. ...||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~---~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN---TESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC---CCCCcEEEecCCC
Confidence 4569999999988876555555545443223233332 2349999887654
No 186
>PRK10905 cell division protein DamX; Validated
Probab=37.98 E-value=48 Score=29.93 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=37.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc-cEEEEEEcCHHHHHHHHHhcCCc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSK-GYGFVTFKEPEAAKKACEDATPI 83 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~sk-G~aFV~F~~~e~A~~Ai~~~~~~ 83 (252)
..+|-|+. ..+++.|+++..+.|. ....+.....+|+.. -.-+=.|.++++|++||+.|-.+
T Consensus 247 ~YTLQL~A---~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 247 HYTLQLSS---SSNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred ceEEEEEe---cCCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 34454444 4467888888887753 333343333244422 12223689999999999998433
No 187
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=37.43 E-value=82 Score=23.76 Aligned_cols=47 Identities=34% Similarity=0.449 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHh-ccCCCeEEEEEeecC----CCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHF-DKYGDILEAVIISDK----LTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F-~~~G~I~~v~i~~d~----~tg~skG~aFV~F~~~e~A~~ 75 (252)
...+.++|++.+ ..+|.=.++.++..- ..++++||+-| |+|.+.+.+
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 456778888877 456744444443322 23566777766 777766553
No 188
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.89 E-value=45 Score=27.65 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=36.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHhc
Q 025468 18 LTKVFVGGLAWETPREALREHFD-KYGDILEAVIISDKLTG--RSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~tg--~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.+++|.. .|+++|.++.. .-|.+..+..-+.. .+ ..+|--||+|.+.+.|.+.++..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4555554 56666555542 22677666543322 23 45788999999999999888765
No 189
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=35.87 E-value=1.1e+02 Score=19.13 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=28.7
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai 77 (252)
.++-+.|.+.| .|+.+.+.... ..++...+++++.+.|.++|
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 45667777766 78777765532 34567778888888877765
No 190
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=35.85 E-value=66 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKE 69 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~ 69 (252)
+|++|+|-.-...++-|+||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766568899999999987
No 191
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.70 E-value=1.2e+02 Score=19.33 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=27.7
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATP 82 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 82 (252)
.+|-++|.++| .|.++....+. ...+..-.++.++.+.+.++|++.|.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~--~~~~~~v~~~ve~~~~~~~~L~~~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEK--KGGKALLIFRTEDIEKAIEVLQERGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccC--CCCeEEEEEEeCCHHHHHHHHHHCCc
Confidence 46667777776 67666553332 11233445555677777777776543
No 192
>CHL00030 rpl23 ribosomal protein L23
Probab=35.69 E-value=1e+02 Score=22.54 Aligned_cols=35 Identities=3% Similarity=0.143 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecC
Q 025468 20 KVFVGGLAWETPREALREHFDK-YG-DILEAVIISDK 54 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~ 54 (252)
+.|+--++.+.+..+|++.++. || .|++|..+.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 4566678999999999999976 67 67777665543
No 193
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=35.56 E-value=44 Score=22.75 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=24.0
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEE
Q 025468 31 PREALREHFDKYGDILEAVIISDKLTGRSKGYGFV 65 (252)
Q Consensus 31 tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV 65 (252)
-|.+|++.|-+--+|+++.|...|.- .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 35678888888889999999887633 3455665
No 194
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=35.19 E-value=12 Score=32.60 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred CcCcEEEEcCCCCCCCHHH-H--HHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 16 TTLTKVFVGGLAWETPREA-L--REHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~-L--~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
.....+|++++-..+..+- | ...|+.+-.+.+.+++++. -+..++++|+.|+..+...++-.+- ++++.-.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~ 168 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKP 168 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCc
Confidence 3455677888877777665 4 7788888888888888887 6788999999999877766666554 3444444
No 195
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=34.29 E-value=1.6e+02 Score=21.22 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=32.0
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+.++++++++| +++++.+... .---...+++.|.+.|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 56788887776 7888877654 34456778888998888777554
No 196
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=33.94 E-value=1.7e+02 Score=20.66 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 25 GLAWETPREALREHF-DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 25 nLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
.++.-+.-+||+.-. ..||.-.++....+. -.|-..+.++.++||+.++..-+-+.|++-+.
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~ 77 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDRSPHMKSLRILLS 77 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence 566777777776555 689998888775542 66788999999999999865555555655443
No 197
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=33.94 E-value=36 Score=31.77 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=30.6
Q ss_pred CCcCcEEEEcCCCCC-CCHHHHHHHhccC----CCeEEEEEee
Q 025468 15 DTTLTKVFVGGLAWE-TPREALREHFDKY----GDILEAVIIS 52 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~-~tee~L~~~F~~~----G~I~~v~i~~ 52 (252)
....++|-|-||+|+ +..++|..+|+.| |.|..|.|-.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 445678889999997 7889999999876 6888888744
No 198
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.76 E-value=1.4e+02 Score=19.45 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 32 REALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 32 ee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
-.+|-++|.++| .|.++.....+ .+ ..+...+.++..++.+++++.+
T Consensus 15 L~~l~~~l~~~~i~i~~~~~~~~~-~~-~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 15 IAEVTQILGDAGISIKNIEILEIR-EG-IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHcCCCceeeEeEEee-cC-CcEEEEEEECCHHHHHHHHHHH
Confidence 367888888887 67777654432 11 2445566675554444444443
No 199
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=31.68 E-value=1.1e+02 Score=25.70 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=30.5
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 31 PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 31 tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+.++.+++++.++.-. +.|..| |-..|=+-+...+.++|.++|+.+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 5677777777666422 344344 334444556669999999999987
No 200
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=31.12 E-value=1.7e+02 Score=19.67 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHhc
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKE---PEAAKKACEDA 80 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~---~e~A~~Ai~~~ 80 (252)
.++-+.|+.+| .|.++.-...+ .....-.-||++.. .+..+++++.+
T Consensus 14 ~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l 64 (75)
T cd04880 14 AKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEEL 64 (75)
T ss_pred HHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHH
Confidence 56778888887 67776433322 12223355788874 56667777775
No 201
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.00 E-value=71 Score=22.66 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred cccEEEEEEcCHHHHHHHHHhc
Q 025468 59 SKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 59 skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
-|||-||+=.+.+++.+||+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi 64 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGI 64 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-
T ss_pred CceEEEEEeCCHHHHHHHHhcc
Confidence 6999999999999999999987
No 202
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=30.94 E-value=66 Score=27.00 Aligned_cols=53 Identities=30% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC
Q 025468 30 TPREALREHFDKYGD---ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 30 ~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
.+.+++++.....|. |.+..|+.. |+.|+=+...-.+.++|..+.+++ +..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 356777777766653 555555443 444553333445889999999988 87776
No 203
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=30.37 E-value=2.2e+02 Score=20.78 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHH----------hccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 25 GLAWETPREALREH----------FDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 25 nLp~~~tee~L~~~----------F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
++|.+++.+++.++ +.+-|.+..+.-+ .|+.+.++.+.-+|.++..+.|..+
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sL 71 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSL 71 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhC
Confidence 67888887765543 3345888887542 5667889999999999999888876
No 204
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=29.85 E-value=85 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.3
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKE 69 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~ 69 (252)
+|++|+|-.-...|+-|+||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888776655468889999999987
No 205
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.84 E-value=1.7e+02 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.7
Q ss_pred eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 45 ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 45 I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
|.+|.+... .+||-||+....+++..+|..+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v 66 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGI 66 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcC
Confidence 556655443 5899999999889999999887
No 206
>PF14893 PNMA: PNMA
Probab=28.84 E-value=20 Score=32.58 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.2
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhc
Q 025468 17 TLTKVFVGGLAWETPREALREHFD 40 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~ 40 (252)
..+.|.|.+||.++++++|++.+.
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHH
Confidence 346789999999999999888764
No 207
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=28.81 E-value=2.4e+02 Score=20.83 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCCcCcEEEEcCCCCCCCH-HHHHHHhccCCCeEEEEEeecCCCCC-----cccEEEEEEcCHHHHHHHHHhcCCccCCe
Q 025468 14 GDTTLTKVFVGGLAWETPR-EALREHFDKYGDILEAVIISDKLTGR-----SKGYGFVTFKEPEAAKKACEDATPIINGR 87 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~te-e~L~~~F~~~G~I~~v~i~~d~~tg~-----skG~aFV~F~~~e~A~~Ai~~~~~~l~G~ 87 (252)
++.+...|-|.-.....++ .+|...+..-|-.+. +.|. .|+ ...|++|.--+.++.++-++.++...-|+
T Consensus 4 ~~~~~YVVt~~~~e~~l~d~~~L~~~lt~~GF~~t---l~D~-~G~~HeLgtntfgl~S~l~~~eV~~la~~lae~algk 79 (96)
T PF11080_consen 4 SDITRYVVTFEYQEAGLTDINELNNHLTRAGFSTT---LTDE-DGNPHELGTNTFGLISALSAEEVAQLARGLAESALGK 79 (96)
T ss_pred CcceEEEEEEEeccCChHHHHHHHHHHHhcCceeE---EecC-CCCEeecCCCeEEEEecCCHHHHHHHHHHHhhhhcCC
Confidence 3444455556555666555 788888877775443 3443 343 24699999999999999888887667777
Q ss_pred eeEEEEcc
Q 025468 88 RANCNLAS 95 (252)
Q Consensus 88 ~l~v~~a~ 95 (252)
.-.|.+..
T Consensus 80 ~p~V~V~t 87 (96)
T PF11080_consen 80 TPEVEVTT 87 (96)
T ss_pred CCceEEEE
Confidence 76666553
No 208
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.34 E-value=45 Score=28.82 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=29.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEA 48 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v 48 (252)
.+...+.||+-|||..+|++.|.++.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44567789999999999999999999999865444
No 209
>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []. This domain, is an internally duplicated structure with a novel fold []. It comprises two similar units that are arranged such that the two -helices pack together in the centre, crossing at an angle of 34 degrees, sandwiched between the two three-stranded, antiparallel beta-sheets. The overall domain is thus constructed as a beta-alpha-beta three-layer sandwich []. ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process; PDB: 3HQ1_A 3HPZ_B 1SR9_A 3FIG_B 3HPS_A 3F6G_A 3F6H_A.
Probab=28.04 E-value=2.2e+02 Score=21.84 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCCHHHHHHHhc-cCCC------eEEEEEeecC
Q 025468 29 ETPREALREHFD-KYGD------ILEAVIISDK 54 (252)
Q Consensus 29 ~~tee~L~~~F~-~~G~------I~~v~i~~d~ 54 (252)
++++++|.++|. .|+. ++++++..+.
T Consensus 1 Ev~~~~i~~lf~~~y~~~~~~~~l~~~~v~~~~ 33 (133)
T PF08502_consen 1 EVTDEDIWALFEEEYLEVEEPYRLKSFQVSSGS 33 (133)
T ss_dssp ---HHHHHHHHHHHHTS--SSEEEEEEEEEEET
T ss_pred CcCHHHHHHHHHHHhCcCCCcEEEEEEEEEECC
Confidence 478999999994 5653 5566666654
No 210
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=27.79 E-value=1.9e+02 Score=21.08 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=34.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc-------C-CCeEEEEEeecC-----CCCCccc-EEEEEEcCHHHHHHHHHhc
Q 025468 19 TKVFVGGLAWETPREALREHFDK-------Y-GDILEAVIISDK-----LTGRSKG-YGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~-------~-G~I~~v~i~~d~-----~tg~skG-~aFV~F~~~e~A~~Ai~~~ 80 (252)
-.+|| |..+++++++.++.++ . |+|.++.-.-.+ -.+..+| |.++.|....++.+.|+..
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~ 82 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA 82 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH
Confidence 34555 4566677665555443 3 466665421111 1234566 6788998777777776654
No 211
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=27.60 E-value=1.9e+02 Score=25.02 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=30.2
Q ss_pred CcEEEEcCCCCCCCH--HHHHHHhccCCCeE----EEEEeecCCCCCcccEEEEEEc
Q 025468 18 LTKVFVGGLAWETPR--EALREHFDKYGDIL----EAVIISDKLTGRSKGYGFVTFK 68 (252)
Q Consensus 18 ~~~lfVgnLp~~~te--e~L~~~F~~~G~I~----~v~i~~d~~tg~skG~aFV~F~ 68 (252)
...|.|--|..+.+. .+||.+|+++|--. ++.++.++ .|.|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 94 GVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred ceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 355677777777544 79999999987432 36666665 4677774
No 212
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=27.44 E-value=49 Score=24.03 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcccEEEEEEcC
Q 025468 18 LTKVFVGGLAWETPREALREHFDK-YGDILEAVIISDKLTGRSKGYGFVTFKE 69 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~~ 69 (252)
..-||||+++..+.|.--+.+-+. .++-.-+-+-. +....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~---~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWS---SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEe---CCCCCCcEEEecCC
Confidence 456999999998877544433333 22221122222 22345788887765
No 213
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=27.39 E-value=1.2e+02 Score=24.38 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=42.4
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKAC 77 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai 77 (252)
+.-..+||+|.-+..--++--+++|+.|- .|.++.+.++....+-+....+...+..+.++.+
T Consensus 84 ~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~~ 147 (153)
T PF14401_consen 84 ERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQDF 147 (153)
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHHH
Confidence 34445789987766555666789999997 7888888777532445566666666655555543
No 214
>PF15063 TC1: Thyroid cancer protein 1
Probab=27.02 E-value=38 Score=23.86 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=28.7
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCe
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDI 45 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I 45 (252)
...-+...++-=+.||=.+++.+.|+.+|.+-|+.
T Consensus 18 g~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 18 GYKFDTASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred CCCcchHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34455666777788999999999999999999975
No 215
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=26.25 E-value=1.5e+02 Score=21.83 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=32.5
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCC
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIING 86 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G 86 (252)
+++++.++.-| .+++++.-. +--.|.|++.++-.+|-+.+...+++
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~~--------~~llirf~~~~~Ql~Ak~~L~~~L~~ 95 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQEG--------DSLLIRFDSTDQQLKAKDVLSKALGD 95 (101)
T ss_pred HHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 58888888877 455555422 34789999999988888877544443
No 216
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=25.96 E-value=2.2e+02 Score=19.40 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=28.3
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHhc
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKE---PEAAKKACEDA 80 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~---~e~A~~Ai~~~ 80 (252)
.++-+.|+++| .|.++.....+ .....=.-||+++. .++..++++.+
T Consensus 16 ~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l 66 (80)
T cd04905 16 YDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEEL 66 (80)
T ss_pred HHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHH
Confidence 66778888886 67777654432 22222234566663 56667777775
No 217
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=25.89 E-value=2.4e+02 Score=19.75 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=33.4
Q ss_pred EcCCCCCCCHHHHHHHh-------ccCCCeEEEEEeecCCCCC-ccc--EE-EEEEcCHHHHHHHH
Q 025468 23 VGGLAWETPREALREHF-------DKYGDILEAVIISDKLTGR-SKG--YG-FVTFKEPEAAKKAC 77 (252)
Q Consensus 23 VgnLp~~~tee~L~~~F-------~~~G~I~~v~i~~d~~tg~-skG--~a-FV~F~~~e~A~~Ai 77 (252)
+-.|..++++++++++. .....|+++.+-++..... .+| ++ +++|++.++.+.-.
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 33577788887775543 3455788888776653322 244 44 36788887765443
No 218
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.50 E-value=2.2e+02 Score=19.28 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCccc-EEEEEEc-CHHHHHHHHHhc
Q 025468 33 EALREHFDKYG-DILEAVIISDKLTGRSKG-YGFVTFK-EPEAAKKACEDA 80 (252)
Q Consensus 33 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG-~aFV~F~-~~e~A~~Ai~~~ 80 (252)
.++-+.|+.+| .+++|+-... .++..- .-||+++ +.++.++||+.+
T Consensus 15 ~~vL~~f~~~~iNlt~IeSRP~--~~~~~~y~Ffvd~~~~~~~~~~~l~~L 63 (74)
T cd04904 15 ARALKLFEEFGVNLTHIESRPS--RRNGSEYEFFVDCEVDRGDLDQLISSL 63 (74)
T ss_pred HHHHHHHHHCCCcEEEEECCCC--CCCCceEEEEEEEEcChHHHHHHHHHH
Confidence 56677787777 5555543222 122222 3457777 555667788776
No 219
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=24.74 E-value=1e+02 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHhccCCCeEEEEE
Q 025468 27 AWETPREALREHFDKYGDILEAVI 50 (252)
Q Consensus 27 p~~~tee~L~~~F~~~G~I~~v~i 50 (252)
...+|+++|++.|..|-.=.++.|
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEE
Confidence 568999999999999976555544
No 220
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=24.74 E-value=80 Score=23.15 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCHHHH---HHHhccCCCeEEEEE--eecCCCCCcccEEEEEEc
Q 025468 20 KVFVGGLAWETPREAL---REHFDKYGDILEAVI--ISDKLTGRSKGYGFVTFK 68 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L---~~~F~~~G~I~~v~i--~~d~~tg~skG~aFV~F~ 68 (252)
..|+.+||.++-+..+ ++.|..+..-.+|.+ ......+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 3588999999988665 455555553333332 112335667777766554
No 221
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.38 E-value=1.2e+02 Score=28.12 Aligned_cols=50 Identities=20% Similarity=0.098 Sum_probs=36.0
Q ss_pred CCHHHHHHHhc----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 30 TPREALREHFD----KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 30 ~tee~L~~~F~----~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
...-+|..+|. .+|.|+++.+..-+ .-..+...++.|.+.+++.+++..+
T Consensus 144 ~~g~dl~~l~~Gs~GtlGiit~~~lkl~p-~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 144 VAGYDLTGLFVGSEGTLGIVTEATLKLLP-KPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCChhhhcccCCccceEEEEEEEEeec-CCCccEEEEEECCCHHHHHHHHHHH
Confidence 33446777774 37889998776655 2344567788999999999998665
No 222
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=23.70 E-value=3.3e+02 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=24.5
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 59 SKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 59 skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.+|=| ++|+++++|.+||.. +..-.|..+.++..-
T Consensus 447 ~~GpA-~VFdsee~a~~ai~~-g~I~~gdVvVIRyeG 481 (615)
T PRK12448 447 FTGPA-RVFESQDDAVEAILG-GKVKAGDVVVIRYEG 481 (615)
T ss_pred EEEeE-EEECCHHHHHHHHhc-CCCCCCeEEEEeCCC
Confidence 34555 459999999999988 333456666666654
No 223
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=23.67 E-value=1e+02 Score=28.74 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 25 GLAWETPREALREHFD----KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 25 nLp~~~tee~L~~~F~----~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.|-.+-|--+|+.+|- ..|.|+++.|+.-+ .-++-..+|+-.++-+++.+++.+.
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~fv~A 289 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKVFVEA 289 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHHHHHH
Confidence 3445566678888882 46789999998876 4556678999888888888776543
No 224
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=23.64 E-value=23 Score=24.33 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=19.1
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhcc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDK 41 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~ 41 (252)
...++||||.+|..+-++.=+.++..
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHH
Confidence 56789999999998777655544433
No 225
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=23.59 E-value=4e+02 Score=26.03 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=24.3
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 59 SKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 59 skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.+|-|. .|+++|+|.+||.... .-.|..|.++..-
T Consensus 382 ~~G~A~-VF~see~a~~ai~~g~-i~~gdVvViRyeG 416 (535)
T TIGR00110 382 FEGPAK-VFESEEEALEAILGGK-IKEGDVVVIRYEG 416 (535)
T ss_pred EEEeEE-EECCHHHHHHHHhcCC-CCCCeEEEEeCCC
Confidence 456665 4999999999998742 2355666666654
No 226
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.58 E-value=1.5e+02 Score=28.46 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=43.6
Q ss_pred EEcCCCCCCCH---HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeee
Q 025468 22 FVGGLAWETPR---EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRA 89 (252)
Q Consensus 22 fVgnLp~~~te---e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l 89 (252)
+||||..-... ..++++=++||.|-.+++-. .-.|..++.+.|+.|+...+.++.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 57887665443 45666667899999887722 2468889999999999987777777764
No 227
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.35 E-value=77 Score=30.64 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=32.6
Q ss_pred ccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccCCCC
Q 025468 60 KGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLGARR 100 (252)
Q Consensus 60 kG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~~~~ 100 (252)
..+++++|++.+.+.+|+..+ +....+..+++..++.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 469999999999999999998 66677777777777654433
No 228
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=23.33 E-value=34 Score=34.05 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=25.1
Q ss_pred CcccEEEEEEcC--HHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 58 RSKGYGFVTFKE--PEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 58 ~skG~aFV~F~~--~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.++|||||..++ .++.--.-..++.-++|-++.|++..
T Consensus 24 ~~~gfgFv~~~~~~~~difI~~~~~~~a~~GD~V~v~i~~ 63 (654)
T TIGR00358 24 HNKGFGFLRPDDDDKKDYFIPPPQMKKVMHGDLVEACPLS 63 (654)
T ss_pred CCCccEEEEeCCCCCCcEEEchHHhCcCCCCCEEEEEEee
Confidence 368999998874 23322222345667999999888754
No 229
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.24 E-value=2.5e+02 Score=19.02 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHhcCC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEAAKKACEDATP 82 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~A~~Ai~~~~~ 82 (252)
.++.|.++.=.--...+++.++....+.++.+-.++ +-++|.|++ .++...||+..|.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~~aGy 65 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIEDAGY 65 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHHHcCC
Confidence 456666666555567888888888878888886653 458999987 3555556665544
No 230
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.16 E-value=68 Score=19.03 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.2
Q ss_pred CCCHHHHHHHhccCCCeE
Q 025468 29 ETPREALREHFDKYGDIL 46 (252)
Q Consensus 29 ~~tee~L~~~F~~~G~I~ 46 (252)
.+++++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 478999999999998753
No 231
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=23.06 E-value=1.3e+02 Score=29.30 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=36.6
Q ss_pred CCHHHHHHHh----ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 30 TPREALREHF----DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 30 ~tee~L~~~F----~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.+.-||..+| ..+|.|+++++-..+ --..+..+++.|.+.++|.+|+..+
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p-~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQK-IPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeec-CCcceEEEEEEcCCHHHHHHHHHHH
Confidence 3445788887 257889998876544 2334567889999999999988775
No 232
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.03 E-value=48 Score=25.69 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=41.0
Q ss_pred EEEEcCCC--CCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 20 KVFVGGLA--WETPREALREHFDK-YGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 20 ~lfVgnLp--~~~tee~L~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
...||.+- ...+-+.|.+.+.+ .+....+++..- ..++..+.|.+++++.++++.-...+++..+.++.-+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 34455542 23556666555533 232222222221 2468999999999999988865555677666555443
No 233
>PHA01632 hypothetical protein
Probab=22.79 E-value=76 Score=21.00 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.4
Q ss_pred EcCCCCCCCHHHHHHHhcc
Q 025468 23 VGGLAWETPREALREHFDK 41 (252)
Q Consensus 23 VgnLp~~~tee~L~~~F~~ 41 (252)
|-.+|..-|||+|++.+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 3478999999999987754
No 234
>PF11249 DUF3047: Protein of unknown function (DUF3047); InterPro: IPR021409 This bacterial family of proteins has no known function.
Probab=22.58 E-value=1.6e+02 Score=24.27 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=31.3
Q ss_pred cCcEEEEc----CCCCCCCH-----HHHHHHh-ccCCCeEEEEEeecCCCCCcccEEE
Q 025468 17 TLTKVFVG----GLAWETPR-----EALREHF-DKYGDILEAVIISDKLTGRSKGYGF 64 (252)
Q Consensus 17 ~~~~lfVg----nLp~~~te-----e~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aF 64 (252)
..+.|-|. ++..+++| +|.+++| +..+.|..|.|+.|..+.+.++-|+
T Consensus 120 r~~~ivv~sg~~~~G~Wv~e~rnv~~Dy~~~FG~~p~~i~~vai~tDsDnT~~~a~A~ 177 (183)
T PF11249_consen 120 RARMIVVRSGQAGLGEWVSEERNVRADYRRAFGEEPPRIVGVAIMTDSDNTGGSARAY 177 (183)
T ss_pred ceEEEEEecCCCCCCCeEEEEECHHHHHHHHhCCCCCceeEEEEEEEcCCCCCEEEEE
Confidence 33445554 45556555 5677777 4577899999999976655554444
No 235
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=22.48 E-value=81 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.2
Q ss_pred ccEEEEEEcCHHHHHHHHHhc--CCccCCeeeEEEE
Q 025468 60 KGYGFVTFKEPEAAKKACEDA--TPIINGRRANCNL 93 (252)
Q Consensus 60 kG~aFV~F~~~e~A~~Ai~~~--~~~l~G~~l~v~~ 93 (252)
.|.|.|...+.++|+...+.+ .....|.+|++.+
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~ti 82 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRATI 82 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EEEE
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEeC
Confidence 577999889999999888877 2357788887764
No 236
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=22.43 E-value=4e+02 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=24.1
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 59 SKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 59 skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.+|=| +.|+++|+|.+||... ..-.|..|.++..-
T Consensus 397 ~~GpA-~VF~see~a~~ai~~g-~I~~gdVvViRyeG 431 (552)
T PRK00911 397 FTGPA-RVFDSEEEAMEAILAG-KIKAGDVVVIRYEG 431 (552)
T ss_pred eeeeE-EEECCHHHHHHHHhcC-CCCCCeEEEEeCCC
Confidence 45555 4599999999999883 33455566666654
No 237
>PRK00110 hypothetical protein; Validated
Probab=21.66 E-value=3.2e+02 Score=23.75 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=32.8
Q ss_pred CcEEEEcCCCCCCCH--HHHHHHhccCCC-e---EEEEEeecCCCCCcccEEEEEEc--CHHHHHH
Q 025468 18 LTKVFVGGLAWETPR--EALREHFDKYGD-I---LEAVIISDKLTGRSKGYGFVTFK--EPEAAKK 75 (252)
Q Consensus 18 ~~~lfVgnLp~~~te--e~L~~~F~~~G~-I---~~v~i~~d~~tg~skG~aFV~F~--~~e~A~~ 75 (252)
...|.|--|..+.+. .+||.+|+++|- + -.|.++.++ .|.|+|. +.+++..
T Consensus 94 GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~~~~~d~~~e 152 (245)
T PRK00110 94 GVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIEPLDEDELME 152 (245)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeCCCCHHHHHH
Confidence 355667777777544 799999999864 3 236666665 4666665 3444444
No 238
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=21.49 E-value=2.1e+02 Score=24.75 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKL---TGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~---tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.-+|-|.-|+-.-.++-++++|+..| +|+-..+..|.. -|.|+ |..|+.+...-...||..+
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhhh
Confidence 45677888888889999999999999 444445555542 24544 7777777666666676654
No 239
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.20 E-value=25 Score=32.04 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 33 EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 33 e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..+.+++.+.|.|.+-...+-- +-|.|||....+++++++++.+
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l 319 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALL 319 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHH
Confidence 3455555666666543333222 3588999999999999999987
No 240
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=20.89 E-value=2.1e+02 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.514 Sum_probs=32.2
Q ss_pred HHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 34 ALREHFDKYG--DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 34 ~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
-+++.|++.| .|+.+ .|..-|.-||-+-++++|++.++.+
T Consensus 44 i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~~~~~~~~l 85 (268)
T TIGR01743 44 IIKETFEKFGIGKLLTV-------PGAAGGVKYIPKMSQAEAEEFVEEL 85 (268)
T ss_pred HHHHHHHhcCCceEEEe-------CCCCCCeEEEeCCCHHHHHHHHHHH
Confidence 4789998765 55433 6888999999999999999888766
No 241
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=20.76 E-value=40 Score=33.47 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 57 GRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 57 g~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
..++|||||.-++.++.--.-..++.-++|-++.|++.+.
T Consensus 25 ~~~kGfgFv~~~~~~difI~~~~l~~A~~GD~V~v~i~~~ 64 (639)
T TIGR02062 25 ATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDKIIAVIHSE 64 (639)
T ss_pred ECCCccEEEEECCCCcEEEChHHHccCCCCCEEEEEEecC
Confidence 3468999997555333222223456679999998887643
No 242
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.69 E-value=1.3e+02 Score=18.82 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=21.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCe
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDI 45 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I 45 (252)
.+++|.+.....+.++|++++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 457777776678899999999998863
No 243
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.68 E-value=3.3e+02 Score=21.11 Aligned_cols=28 Identities=32% Similarity=0.277 Sum_probs=20.0
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCccCC
Q 025468 59 SKGYGFVTFKEPEAAKKACEDATPIING 86 (252)
Q Consensus 59 skG~aFV~F~~~e~A~~Ai~~~~~~l~G 86 (252)
.|..-|+.-++.+.+.+||+..+..+-|
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 4566666777888888998887655433
No 244
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=20.60 E-value=1.2e+02 Score=27.49 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCCHHHH---HHHhccCCCeEEEEEeecCCCCCcccEEEEEEc
Q 025468 20 KVFVGGLAWETPREAL---REHFDKYGDILEAVIISDKLTGRSKGYGFVTFK 68 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L---~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~ 68 (252)
..++.+|+..+.+..+ ++.+++. .+.++.|..|...+.+.|++.+.+.
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEEE
Confidence 4567899988887654 5556552 2335556655545788888877665
No 245
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=20.52 E-value=3.2e+02 Score=20.48 Aligned_cols=28 Identities=7% Similarity=0.228 Sum_probs=18.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEE
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEA 48 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v 48 (252)
..||||+++...+.+.|++. .+..|.++
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l 33 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINV 33 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEc
Confidence 35999999987766666653 34455544
No 246
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=20.34 E-value=4.3e+02 Score=24.66 Aligned_cols=65 Identities=31% Similarity=0.357 Sum_probs=42.1
Q ss_pred CCHHHHHHHhccCC---CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C----CccCCeeeEEEEcccC
Q 025468 30 TPREALREHFDKYG---DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T----PIINGRRANCNLASLG 97 (252)
Q Consensus 30 ~tee~L~~~F~~~G---~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~----~~l~G~~l~v~~a~~~ 97 (252)
.+.++++++-.++| -+.+..|... |+.|+=|...-++.++|.++.+++ + ..+.|..++.-+....
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aG---GRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~ 98 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAG---GRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEA 98 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeec---CccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEec
Confidence 46677777777776 3445555443 444544444456899999999988 8 6678877655555433
No 247
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=1.9e+02 Score=21.30 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHhccCCC---eE--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 025468 34 ALREHFDKYGD---IL--EAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78 (252)
Q Consensus 34 ~L~~~F~~~G~---I~--~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~ 78 (252)
.....|++||. +. +++.+.. ....-....|+|.|.+.|..+-.
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHhc
Confidence 34567778873 11 1222222 22334578999999988876543
No 248
>PHA00742 hypothetical protein
Probab=20.34 E-value=56 Score=26.79 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHhccCCC----eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 27 AWETPREALREHFDKYGD----ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 27 p~~~tee~L~~~F~~~G~----I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..++|||+-++ +||+ |.+.+|-..+.-..--..-||.+.|.|+-.+||.++
T Consensus 98 GSswteeqSke---RYGe~vyAiLstKvevA~kydV~GRv~FihynD~EDKlk~isAL 152 (211)
T PHA00742 98 GSSWTEEQSKE---RYGESVYAILSTKVEVAKKYDVMGRVWFIHYNDTEDKLKCISAL 152 (211)
T ss_pred CCccchhhhHH---hcCcchHHHHHHHHHHHHhhcccceEEEEEecChhHhhhhhHHH
Confidence 44678887765 4554 333333221111122236799999999999999887
No 249
>COG4776 Rnb Exoribonuclease II [Transcription]
Probab=20.25 E-value=1.2e+02 Score=29.10 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=24.5
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 59 SKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 59 skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
-|||||++.+...+---.=..|.++++|.+|..-+-.
T Consensus 30 ekgfGFLEvD~qkSYFIpPp~MKkvMHGDkIiA~i~t 66 (645)
T COG4776 30 EKGFGFLEVDAQKSYFIPPPQMKKVMHGDKIIAVIHT 66 (645)
T ss_pred cccceeEEEcCccccccCCHHHhhhcccCeEEEEEEe
Confidence 4799999988665544333455566888877655544
No 250
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.24 E-value=3.6e+02 Score=25.02 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=30.4
Q ss_pred CHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 31 PREALREHFDKYGD---ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 31 tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
+.++..+..++.|. +.++.+... ..++..|..+. .+.+++.+|.+++ +..+
T Consensus 27 ~~~ea~~~a~~lg~p~~VvK~qv~~g-~Rgk~GGV~l~--~~~~e~~~a~~~ll~~~~ 81 (392)
T PRK14046 27 SPEQAVYRARELGGWHWVVKAQIHSG-ARGKAGGIKLC--RTYNEVRDAAEDLLGKKL 81 (392)
T ss_pred CHHHHHHHHHHcCCCcEEEEeeeccC-CCCcCCeEEEE--CCHHHHHHHHHHHhcchh
Confidence 56666677766664 444434322 12333344444 5899999999988 6544
Done!