Query 025468
Match_columns 252
No_of_seqs 319 out of 1717
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 1.7E-22 5.9E-27 154.0 15.3 95 4-98 3-97 (116)
2 4fxv_A ELAV-like protein 1; RN 99.9 4.5E-23 1.5E-27 153.6 11.1 81 16-96 17-98 (99)
3 2dgo_A Cytotoxic granule-assoc 99.9 3.2E-22 1.1E-26 152.1 16.0 96 6-101 3-99 (115)
4 2cq0_A Eukaryotic translation 99.9 4.9E-22 1.7E-26 148.2 13.5 93 8-100 5-98 (103)
5 1x5u_A Splicing factor 3B subu 99.9 6.9E-22 2.3E-26 147.8 13.5 92 8-99 5-97 (105)
6 3s8s_A Histone-lysine N-methyl 99.9 3.3E-22 1.1E-26 151.7 11.7 84 15-98 3-87 (110)
7 2cpz_A CUG triplet repeat RNA- 99.9 5E-22 1.7E-26 151.2 12.6 89 12-100 19-108 (115)
8 2dgs_A DAZ-associated protein 99.9 8.8E-22 3E-26 145.8 13.5 89 12-100 4-92 (99)
9 2do4_A Squamous cell carcinoma 99.9 9.1E-22 3.1E-26 146.0 12.7 94 4-98 3-97 (100)
10 1whw_A Hypothetical protein ri 99.9 1.1E-21 3.7E-26 145.2 12.8 88 13-100 3-91 (99)
11 2dnm_A SRP46 splicing factor; 99.9 7.6E-22 2.6E-26 147.1 12.0 90 11-100 6-96 (103)
12 2lkz_A RNA-binding protein 5; 99.9 2.4E-22 8.1E-27 148.7 8.7 85 12-96 3-94 (95)
13 2do0_A HnRNP M, heterogeneous 99.9 3.7E-21 1.3E-25 145.8 15.5 90 10-100 7-97 (114)
14 1wi8_A EIF-4B, eukaryotic tran 99.9 2E-21 6.9E-26 145.2 13.6 90 9-100 6-97 (104)
15 1u6f_A Tcubp1, RNA-binding pro 99.9 1.4E-21 4.8E-26 153.4 13.3 89 12-100 36-125 (139)
16 2dng_A Eukaryotic translation 99.9 2.5E-21 8.6E-26 144.4 14.0 90 8-99 5-95 (103)
17 2khc_A Testis-specific RNP-typ 99.9 9.9E-22 3.4E-26 150.1 11.8 84 12-95 34-118 (118)
18 2d9p_A Polyadenylate-binding p 99.9 2.2E-21 7.6E-26 144.6 13.3 91 8-100 5-96 (103)
19 2dh8_A DAZ-associated protein 99.9 7.4E-22 2.5E-26 147.7 10.7 93 7-99 5-97 (105)
20 2e5h_A Zinc finger CCHC-type a 99.9 1.2E-21 4.1E-26 143.4 11.5 88 8-95 6-94 (94)
21 2cqg_A TDP-43, TAR DNA-binding 99.9 2.1E-21 7E-26 144.8 12.9 91 8-99 5-95 (103)
22 2cph_A RNA binding motif prote 99.9 2.2E-21 7.6E-26 145.4 13.0 94 7-100 4-100 (107)
23 2dnh_A Bruno-like 5, RNA bindi 99.9 2.7E-21 9.3E-26 144.5 13.5 89 11-100 8-100 (105)
24 2lxi_A RNA-binding protein 10; 99.9 1.4E-22 4.7E-27 148.5 6.2 82 18-99 1-85 (91)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.9 7.9E-22 2.7E-26 146.7 10.4 88 13-100 7-95 (102)
26 2dgp_A Bruno-like 4, RNA bindi 99.9 1.1E-21 3.9E-26 146.8 11.3 90 10-99 5-98 (106)
27 1x5s_A Cold-inducible RNA-bind 99.9 1.4E-21 4.6E-26 145.4 11.6 87 13-99 7-94 (102)
28 2dnz_A Probable RNA-binding pr 99.9 2.6E-21 9.1E-26 141.9 13.0 83 16-98 3-86 (95)
29 2fy1_A RNA-binding motif prote 99.9 2.7E-21 9.3E-26 147.8 13.3 85 14-99 3-88 (116)
30 3s7r_A Heterogeneous nuclear r 99.9 1.3E-21 4.6E-26 141.3 10.9 83 12-94 5-87 (87)
31 2rs2_A Musashi-1, RNA-binding 99.9 9.9E-22 3.4E-26 148.6 10.6 89 12-100 19-107 (109)
32 2cqc_A Arginine/serine-rich sp 99.9 1.8E-21 6E-26 142.7 11.4 90 7-96 4-94 (95)
33 1x4h_A RNA-binding protein 28; 99.9 2.6E-21 9E-26 145.9 12.6 91 10-100 7-104 (111)
34 2m2b_A RNA-binding protein 10; 99.9 7E-22 2.4E-26 154.1 9.7 90 8-98 13-109 (131)
35 1x5t_A Splicing factor 3B subu 99.9 1.9E-21 6.4E-26 143.0 11.0 85 16-100 3-89 (96)
36 2cpe_A RNA-binding protein EWS 99.9 3E-21 1E-25 146.3 12.0 90 10-99 7-105 (113)
37 1p27_B RNA-binding protein 8A; 99.9 2.5E-21 8.6E-26 144.9 11.5 89 10-98 15-104 (106)
38 2dhg_A TRNA selenocysteine ass 99.9 2.7E-21 9.3E-26 144.3 11.2 88 12-100 3-93 (104)
39 2cqi_A Nucleolysin TIAR; RNA r 99.9 7.2E-21 2.4E-25 141.8 13.4 89 10-100 7-96 (103)
40 1oo0_B CG8781-PA, drosophila Y 99.9 2.8E-21 9.5E-26 145.8 11.1 91 9-99 17-108 (110)
41 3md1_A Nuclear and cytoplasmic 99.9 4.6E-21 1.6E-25 137.0 11.5 80 18-97 1-81 (83)
42 2cq3_A RNA-binding protein 9; 99.9 1.4E-20 4.7E-25 140.3 14.6 91 8-100 5-96 (103)
43 4f25_A Polyadenylate-binding p 99.9 2.5E-21 8.5E-26 147.7 10.6 81 17-99 4-85 (115)
44 2ywk_A Putative RNA-binding pr 99.9 2.8E-21 9.5E-26 141.8 10.5 88 8-96 6-94 (95)
45 2cpf_A RNA binding motif prote 99.9 3.1E-21 1E-25 142.5 10.7 85 15-99 2-90 (98)
46 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.7E-21 1.3E-25 138.8 10.7 81 16-96 4-85 (87)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.2E-21 1.1E-25 138.5 10.2 81 15-95 4-85 (85)
48 3ex7_B RNA-binding protein 8A; 99.9 3.4E-21 1.2E-25 148.7 11.1 90 11-100 15-105 (126)
49 2kxn_B Transformer-2 protein h 99.9 2E-21 6.8E-26 151.4 9.8 89 10-98 38-127 (129)
50 2cqp_A RNA-binding protein 12; 99.8 3.5E-21 1.2E-25 142.1 9.9 86 11-96 8-94 (98)
51 3p5t_L Cleavage and polyadenyl 99.8 9.7E-22 3.3E-26 143.3 6.2 79 19-97 2-83 (90)
52 2la6_A RNA-binding protein FUS 99.8 1.1E-20 3.7E-25 140.0 11.5 84 12-95 7-99 (99)
53 2div_A TRNA selenocysteine ass 99.8 8.1E-21 2.8E-25 140.4 10.7 84 14-97 5-94 (99)
54 2x1f_A MRNA 3'-END-processing 99.8 9.1E-21 3.1E-25 139.6 10.7 80 18-97 2-82 (96)
55 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.4E-20 4.9E-25 150.6 12.7 86 14-99 35-121 (156)
56 1x4a_A Splicing factor, argini 99.8 3.5E-20 1.2E-24 139.6 13.7 85 12-99 16-101 (109)
57 1x4b_A Heterogeneous nuclear r 99.8 6.9E-21 2.4E-25 145.0 9.9 85 16-100 25-109 (116)
58 2ek1_A RNA-binding protein 12; 99.8 2.6E-21 8.9E-26 141.9 7.1 85 12-96 9-94 (95)
59 2jrs_A RNA-binding protein 39; 99.8 1.5E-20 5E-25 141.9 11.4 86 12-97 20-106 (108)
60 2cq4_A RNA binding motif prote 99.8 5.9E-21 2E-25 145.0 8.9 83 15-98 22-105 (114)
61 3n9u_C Cleavage and polyadenyl 99.8 1.1E-20 3.9E-25 151.8 10.9 80 17-96 54-136 (156)
62 1wg5_A Heterogeneous nuclear r 99.8 2.6E-20 9E-25 139.4 12.2 87 10-97 7-94 (104)
63 4a8x_A RNA-binding protein wit 99.8 1.1E-20 3.7E-25 136.5 9.6 83 16-98 2-86 (88)
64 2fc9_A NCL protein; structure 99.8 2.6E-20 8.9E-25 138.3 12.0 86 9-98 6-92 (101)
65 3ns6_A Eukaryotic translation 99.8 3.7E-21 1.3E-25 143.2 7.3 82 15-96 3-92 (100)
66 2dgv_A HnRNP M, heterogeneous 99.8 2.3E-20 7.9E-25 136.0 11.3 84 13-98 3-87 (92)
67 2dis_A Unnamed protein product 99.8 2.3E-20 7.8E-25 140.4 11.5 86 15-100 5-95 (109)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-20 6.7E-25 146.5 11.5 84 11-94 56-140 (140)
69 3ucg_A Polyadenylate-binding p 99.8 9.8E-21 3.4E-25 137.1 8.9 80 16-96 4-84 (89)
70 2cq1_A PTB-like protein L; RRM 99.8 6.1E-20 2.1E-24 137.2 13.3 85 9-99 6-93 (101)
71 2cpi_A CCR4-NOT transcription 99.8 1.8E-20 6.2E-25 141.9 10.4 92 7-98 4-102 (111)
72 1wez_A HnRNP H', FTP-3, hetero 99.8 2.6E-20 8.8E-25 139.3 10.9 84 12-97 9-92 (102)
73 2cpy_A RNA-binding protein 12; 99.8 3.2E-21 1.1E-25 146.8 5.9 85 12-97 9-94 (114)
74 3ulh_A THO complex subunit 4; 99.8 3.2E-20 1.1E-24 139.1 11.2 83 12-95 23-106 (107)
75 1x4c_A Splicing factor, argini 99.8 9.9E-20 3.4E-24 137.1 13.7 80 12-98 9-94 (108)
76 2lea_A Serine/arginine-rich sp 99.8 9.1E-21 3.1E-25 148.8 8.3 90 11-100 40-130 (135)
77 1p1t_A Cleavage stimulation fa 99.8 6.5E-21 2.2E-25 142.1 7.1 87 13-99 3-90 (104)
78 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-20 5.3E-25 141.2 9.1 80 14-99 12-94 (105)
79 1s79_A Lupus LA protein; RRM, 99.8 1.7E-20 5.8E-25 140.6 9.2 83 13-96 6-88 (103)
80 2fc8_A NCL protein; structure 99.8 5.2E-20 1.8E-24 136.8 11.7 89 8-99 5-94 (102)
81 1x4d_A Matrin 3; structural ge 99.8 3.5E-20 1.2E-24 138.7 10.8 82 11-98 8-93 (102)
82 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.2E-21 2.5E-25 134.1 6.6 76 19-94 1-76 (77)
83 2dgu_A Heterogeneous nuclear r 99.8 8.7E-20 3E-24 136.1 12.7 82 13-102 6-88 (103)
84 2jwn_A Embryonic polyadenylate 99.8 3.9E-20 1.3E-24 142.4 11.1 81 16-97 34-115 (124)
85 2kn4_A Immunoglobulin G-bindin 99.8 5.2E-20 1.8E-24 147.3 12.1 88 12-99 64-152 (158)
86 1wex_A Hypothetical protein (r 99.8 1.2E-19 4E-24 136.3 12.9 85 8-98 5-92 (104)
87 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.1E-20 1.7E-24 149.0 11.7 89 12-100 66-155 (165)
88 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.9E-24 137.7 12.9 84 12-96 19-111 (114)
89 2dgx_A KIAA0430 protein; RRM d 99.8 5.5E-20 1.9E-24 135.6 10.7 79 16-97 7-90 (96)
90 1x4e_A RNA binding motif, sing 99.8 9.1E-21 3.1E-25 136.3 6.1 79 16-94 3-82 (85)
91 2db1_A Heterogeneous nuclear r 99.8 2.8E-20 9.7E-25 142.5 9.0 84 12-96 11-97 (118)
92 2dgw_A Probable RNA-binding pr 99.8 9.1E-20 3.1E-24 132.8 11.3 82 13-97 5-87 (91)
93 1why_A Hypothetical protein ri 99.8 1.2E-19 4.2E-24 133.7 11.8 88 4-97 3-93 (97)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.1E-20 7E-25 139.0 7.5 84 12-97 13-98 (100)
95 2mss_A Protein (musashi1); RNA 99.8 1.5E-20 5.3E-25 131.9 6.4 75 20-94 1-75 (75)
96 2kt5_A RNA and export factor-b 99.8 1.6E-19 5.5E-24 139.1 12.7 84 13-97 30-114 (124)
97 2err_A Ataxin-2-binding protei 99.8 5.1E-20 1.8E-24 139.0 9.8 85 11-97 22-107 (109)
98 2dnq_A RNA-binding protein 4B; 99.8 1.8E-19 6.3E-24 131.0 11.9 79 13-99 3-82 (90)
99 3q2s_C Cleavage and polyadenyl 99.8 4.6E-20 1.6E-24 157.2 9.5 80 17-96 67-149 (229)
100 2cpj_A Non-POU domain-containi 99.8 2.2E-19 7.5E-24 132.8 12.0 85 8-98 5-90 (99)
101 1iqt_A AUF1, heterogeneous nuc 99.8 1.5E-20 5.2E-25 131.8 5.1 75 20-94 1-75 (75)
102 2dnn_A RNA-binding protein 12; 99.8 1.2E-19 4E-24 137.5 9.8 83 12-96 10-92 (109)
103 2ki2_A SS-DNA binding protein 99.8 1.6E-20 5.6E-25 136.4 4.6 78 19-97 2-80 (90)
104 2e5j_A Methenyltetrahydrofolat 99.8 2.2E-19 7.4E-24 132.5 10.7 82 12-98 13-95 (97)
105 1wel_A RNA-binding protein 12; 99.8 5.2E-20 1.8E-24 142.0 7.5 82 14-96 21-103 (124)
106 2ad9_A Polypyrimidine tract-bi 99.8 3.5E-19 1.2E-23 136.8 11.6 81 14-100 27-110 (119)
107 2jvo_A Nucleolar protein 3; nu 99.8 2.2E-19 7.5E-24 135.5 9.7 83 10-100 23-106 (108)
108 2xs2_A Deleted in azoospermia- 99.8 9.6E-20 3.3E-24 135.4 7.5 84 13-98 4-87 (102)
109 2cpx_A Hypothetical protein FL 99.8 9.4E-20 3.2E-24 138.3 7.5 87 14-100 21-108 (115)
110 1x4g_A Nucleolysin TIAR; struc 99.8 4.3E-19 1.5E-23 133.7 11.1 80 14-99 21-101 (109)
111 2hgl_A HNRPF protein, heteroge 99.8 1.2E-19 4.1E-24 142.7 8.1 82 13-96 39-124 (136)
112 2hvz_A Splicing factor, argini 99.8 3.4E-19 1.2E-23 132.2 9.8 76 19-99 1-77 (101)
113 2nlw_A Eukaryotic translation 99.8 2.6E-19 9.1E-24 134.1 9.1 83 13-97 10-100 (105)
114 1x5p_A Negative elongation fac 99.8 1.2E-18 4.3E-23 128.4 12.6 85 7-99 4-89 (97)
115 1fj7_A Nucleolin RBD1, protein 99.8 4.3E-20 1.5E-24 137.1 4.7 83 14-98 13-96 (101)
116 2hgm_A HNRPF protein, heteroge 99.8 1.9E-19 6.6E-24 139.7 8.4 81 14-96 38-120 (126)
117 2lcw_A RNA-binding protein FUS 99.7 6.3E-21 2.2E-25 145.3 0.0 86 14-99 3-97 (116)
118 1wf1_A RNA-binding protein RAL 99.8 1E-18 3.6E-23 131.7 12.1 75 16-98 25-101 (110)
119 3r27_A HnRNP L, heterogeneous 99.8 6.1E-19 2.1E-23 131.2 10.5 78 14-97 17-97 (100)
120 2jvr_A Nucleolar protein 3; RN 99.8 1.9E-19 6.5E-24 136.7 7.9 78 16-97 26-105 (111)
121 2cqh_A IGF-II mRNA-binding pro 99.8 3.8E-19 1.3E-23 130.0 8.6 80 14-100 4-86 (93)
122 2dgt_A RNA-binding protein 30; 99.8 1.5E-18 5.3E-23 126.6 11.8 80 12-99 4-84 (92)
123 2ytc_A PRE-mRNA-splicing facto 99.8 9.3E-19 3.2E-23 125.6 10.5 79 11-95 5-85 (85)
124 2a3j_A U1 small nuclear ribonu 99.8 7.2E-19 2.4E-23 136.7 10.5 82 14-98 25-111 (127)
125 2cpd_A Apobec-1 stimulating pr 99.8 2.7E-18 9.1E-23 127.0 13.1 80 11-98 8-90 (99)
126 2lmi_A GRSF-1, G-rich sequence 99.8 1.6E-19 5.3E-24 135.9 6.4 84 12-96 5-91 (107)
127 2wbr_A GW182, gawky, LD47780P; 99.8 3.6E-19 1.2E-23 128.8 7.9 73 17-95 6-79 (89)
128 2hgn_A Heterogeneous nuclear r 99.8 9.4E-20 3.2E-24 143.8 4.9 82 14-98 42-124 (139)
129 2la4_A Nuclear and cytoplasmic 99.8 4.3E-19 1.5E-23 131.6 8.2 77 14-96 23-100 (101)
130 2e5g_A U6 snRNA-specific termi 99.8 1.6E-18 5.6E-23 127.0 11.2 79 14-98 4-83 (94)
131 2dnp_A RNA-binding protein 14; 99.8 1.5E-18 5E-23 126.2 10.8 78 13-98 4-82 (90)
132 1x4f_A Matrin 3; structural ge 99.8 1.3E-18 4.5E-23 132.2 10.8 79 14-98 21-103 (112)
133 2krb_A Eukaryotic translation 99.8 2.7E-19 9.3E-24 127.6 6.2 72 18-91 1-80 (81)
134 4f02_A Polyadenylate-binding p 99.8 1.4E-18 4.9E-23 145.7 11.3 83 15-97 12-95 (213)
135 1l3k_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 142.1 11.3 86 12-97 7-92 (196)
136 2dha_A FLJ20171 protein; RRM d 99.8 3.7E-19 1.2E-23 137.6 6.5 81 15-96 20-104 (123)
137 2dnl_A Cytoplasmic polyadenyla 99.8 6.9E-19 2.4E-23 133.8 7.8 80 14-95 4-86 (114)
138 1l3k_A Heterogeneous nuclear r 99.8 1.9E-18 6.4E-23 141.8 11.0 87 15-101 101-187 (196)
139 1nu4_A U1A RNA binding domain; 99.8 8E-19 2.7E-23 129.0 7.7 82 14-98 4-90 (97)
140 2kvi_A Nuclear polyadenylated 99.8 1.4E-18 4.8E-23 127.9 8.7 78 14-99 6-85 (96)
141 3pgw_S U1-70K; protein-RNA com 99.8 4.9E-18 1.7E-22 157.4 14.5 85 14-98 98-183 (437)
142 1fjc_A Nucleolin RBD2, protein 99.8 1E-18 3.5E-23 128.3 7.7 82 12-98 10-92 (96)
143 2f3j_A RNA and export factor b 99.8 2.1E-18 7.2E-23 141.3 10.3 83 14-97 84-167 (177)
144 2e44_A Insulin-like growth fac 99.8 2.5E-18 8.7E-23 126.2 9.5 82 12-97 9-92 (96)
145 2xnq_A Nuclear polyadenylated 99.8 4.5E-18 1.6E-22 125.7 10.9 77 13-97 17-95 (97)
146 2i2y_A Fusion protein consists 99.8 2.7E-18 9.3E-23 136.4 10.3 81 12-97 67-148 (150)
147 2j8a_A Histone-lysine N-methyl 99.8 1.2E-18 4E-23 134.5 7.7 79 19-97 3-96 (136)
148 3md3_A Nuclear and cytoplasmic 99.8 8.2E-18 2.8E-22 133.9 12.6 83 13-95 82-165 (166)
149 1wf0_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4.1E-23 126.1 6.7 79 15-99 2-80 (88)
150 3lqv_A PRE-mRNA branch site pr 99.7 7E-18 2.4E-22 127.9 10.8 80 15-97 5-85 (115)
151 1whx_A Hypothetical protein ri 99.7 3.6E-18 1.2E-22 129.4 9.1 78 15-98 7-85 (111)
152 3beg_B Splicing factor, argini 99.7 2.7E-18 9.1E-23 130.9 8.3 76 14-96 12-93 (115)
153 1fxl_A Paraneoplastic encephal 99.7 7.2E-18 2.5E-22 134.3 11.2 80 18-97 2-82 (167)
154 1b7f_A Protein (SXL-lethal pro 99.7 6.5E-18 2.2E-22 135.1 10.8 82 17-98 2-84 (168)
155 3d2w_A TAR DNA-binding protein 99.7 3.4E-18 1.2E-22 124.5 8.3 80 13-98 6-85 (89)
156 1sjr_A Polypyrimidine tract-bi 99.7 1E-17 3.6E-22 135.1 11.7 81 14-98 42-125 (164)
157 2yh0_A Splicing factor U2AF 65 99.7 1.9E-17 6.5E-22 135.9 12.8 84 15-98 111-195 (198)
158 2qfj_A FBP-interacting repress 99.7 1.5E-17 5E-22 138.5 12.1 82 16-97 123-205 (216)
159 1wg1_A KIAA1579 protein, homol 99.7 5.2E-18 1.8E-22 122.9 8.1 75 16-97 3-78 (88)
160 3egn_A RNA-binding protein 40; 99.7 1.1E-18 3.7E-23 137.7 4.6 86 15-100 42-133 (143)
161 2g4b_A Splicing factor U2AF 65 99.7 1.9E-17 6.5E-22 133.0 10.9 80 16-95 92-172 (172)
162 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-17 6.2E-22 137.5 11.0 82 17-99 108-189 (193)
163 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5E-22 139.5 9.7 79 17-97 102-181 (213)
164 3md3_A Nuclear and cytoplasmic 99.7 2.5E-17 8.7E-22 131.0 10.5 78 19-97 1-79 (166)
165 2cq2_A Hypothetical protein LO 99.7 1.9E-17 6.4E-22 126.1 9.2 77 14-96 21-105 (114)
166 2cjk_A Nuclear polyadenylated 99.7 1.5E-17 5.2E-22 132.9 8.7 79 17-96 2-80 (167)
167 2bz2_A Negative elongation fac 99.7 3E-17 1E-21 126.3 9.4 78 13-98 34-112 (121)
168 2qfj_A FBP-interacting repress 99.7 2.8E-17 9.5E-22 136.8 9.8 82 16-97 26-108 (216)
169 2cjk_A Nuclear polyadenylated 99.7 1.3E-17 4.4E-22 133.4 7.1 81 17-97 86-166 (167)
170 1b7f_A Protein (SXL-lethal pro 99.7 7.6E-17 2.6E-21 128.8 11.6 81 14-94 85-168 (168)
171 3zzy_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 124.7 11.6 80 14-98 24-107 (130)
172 3tyt_A Heterogeneous nuclear r 99.7 6.5E-17 2.2E-21 135.3 10.9 77 17-98 3-81 (205)
173 3nmr_A Cugbp ELAV-like family 99.7 7.8E-17 2.7E-21 129.4 10.6 81 14-95 91-175 (175)
174 2hzc_A Splicing factor U2AF 65 99.7 5.8E-17 2E-21 116.5 8.6 72 15-93 3-86 (87)
175 2e5i_A Heterogeneous nuclear r 99.7 2E-16 6.7E-21 122.3 12.0 77 16-98 23-103 (124)
176 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 4.6E-21 126.9 10.8 81 14-94 84-167 (167)
177 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4.1E-21 128.3 10.2 81 17-97 2-88 (175)
178 2diu_A KIAA0430 protein; struc 99.7 2.8E-16 9.5E-21 114.8 10.7 71 19-99 10-86 (96)
179 3pgw_A U1-A; protein-RNA compl 99.7 2.2E-16 7.6E-21 137.1 11.3 83 13-98 4-91 (282)
180 2pe8_A Splicing factor 45; RRM 99.7 3.8E-16 1.3E-20 117.3 10.5 82 15-96 5-93 (105)
181 3u1l_A PRE-mRNA-splicing facto 99.6 1.9E-16 6.4E-21 135.4 8.0 78 14-97 130-229 (240)
182 2dit_A HIV TAT specific factor 99.6 2.5E-15 8.6E-20 113.6 12.8 85 10-98 7-103 (112)
183 1fje_B Nucleolin RBD12, protei 99.6 7.4E-16 2.5E-20 124.2 9.8 80 13-97 94-174 (175)
184 2adc_A Polypyrimidine tract-bi 99.6 7.9E-16 2.7E-20 130.3 10.1 80 13-97 29-110 (229)
185 3smz_A Protein raver-1, ribonu 99.6 8.8E-16 3E-20 133.4 10.3 85 14-99 180-266 (284)
186 3pgw_A U1-A; protein-RNA compl 99.6 1.8E-15 6.1E-20 131.4 11.8 77 14-95 203-281 (282)
187 3smz_A Protein raver-1, ribonu 99.6 1.8E-15 6.3E-20 131.4 11.7 82 17-98 94-176 (284)
188 2ghp_A U4/U6 snRNA-associated 99.6 1.2E-15 4E-20 133.2 9.0 83 14-97 206-291 (292)
189 1fje_B Nucleolin RBD12, protei 99.6 3.3E-16 1.1E-20 126.3 4.2 84 12-97 7-91 (175)
190 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 125.1 8.2 77 17-98 2-80 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.6 3E-14 1E-18 105.9 12.9 75 18-98 10-91 (100)
192 3sde_A Paraspeckle component 1 99.6 5.4E-15 1.9E-19 127.6 9.5 81 17-98 95-180 (261)
193 1jmt_A Splicing factor U2AF 35 99.6 8.3E-16 2.8E-20 115.1 3.8 71 23-94 20-103 (104)
194 3tyt_A Heterogeneous nuclear r 99.6 2.7E-15 9.1E-20 125.5 6.8 76 17-94 122-204 (205)
195 3sde_A Paraspeckle component 1 99.6 9.8E-15 3.3E-19 125.9 10.5 79 12-96 16-95 (261)
196 3v4m_A Splicing factor U2AF 65 99.6 8.4E-15 2.9E-19 109.8 8.6 82 15-96 2-96 (105)
197 2ghp_A U4/U6 snRNA-associated 99.6 6.2E-15 2.1E-19 128.5 8.7 82 17-99 116-199 (292)
198 2adc_A Polypyrimidine tract-bi 99.6 1.3E-14 4.4E-19 122.7 10.1 75 17-96 150-227 (229)
199 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-14 5.1E-19 119.0 9.9 76 16-96 118-196 (198)
200 2g4b_A Splicing factor U2AF 65 99.5 3E-14 1E-18 114.2 9.5 74 17-97 3-88 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 2.7E-14 9.1E-19 117.0 8.7 74 17-97 3-88 (198)
202 3ue2_A Poly(U)-binding-splicin 99.5 4.7E-14 1.6E-18 108.0 8.6 80 17-96 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 1.5E-13 5.2E-18 123.2 8.7 77 13-95 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.6E-12 5.4E-17 98.8 6.7 76 17-96 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 2.2E-11 7.5E-16 93.2 9.0 78 12-95 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 9.4E-11 3.2E-15 84.7 8.7 74 17-99 6-88 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 4.7E-10 1.6E-14 94.1 8.5 67 30-96 141-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 2.7E-10 9.3E-15 82.8 4.6 75 12-95 9-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.5 4.2E-07 1.4E-11 67.4 7.9 74 16-95 19-98 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.4 4.5E-06 1.5E-10 61.3 10.3 76 14-97 4-84 (104)
211 1whv_A Poly(A)-specific ribonu 97.7 0.00013 4.6E-09 52.9 7.1 58 14-80 12-69 (100)
212 1wey_A Calcipressin 1; structu 97.6 0.00013 4.3E-09 53.7 6.7 74 16-95 3-82 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.5 0.0006 2.1E-08 51.4 8.5 75 14-95 20-95 (119)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00025 8.5E-09 51.6 5.6 53 19-80 7-59 (101)
215 1uw4_A UPF3X; nonsense mediate 97.4 0.0019 6.4E-08 46.5 9.8 65 19-83 2-69 (91)
216 3p3d_A Nucleoporin 53; structu 96.8 0.0012 4.2E-08 50.4 4.8 77 18-95 7-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.5 0.0012 4E-08 61.1 3.0 58 17-80 52-109 (464)
218 2kn4_A Immunoglobulin G-bindin 96.4 0.0033 1.1E-07 49.0 4.5 32 47-80 2-33 (158)
219 2l08_A Regulator of nonsense t 95.9 0.017 5.8E-07 41.8 6.1 67 17-83 8-77 (97)
220 2i2y_A Fusion protein consists 93.6 0.042 1.4E-06 42.3 3.1 40 56-96 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 93.0 0.27 9.3E-06 45.9 8.0 55 17-80 439-493 (507)
222 2g0c_A ATP-dependent RNA helic 82.2 3.5 0.00012 27.5 5.8 67 20-95 2-75 (76)
223 2cu1_A Mitogen-activated prote 69.1 11 0.00037 27.1 5.4 64 25-96 23-87 (103)
224 3fry_A Probable copper-exporti 64.5 17 0.00058 23.2 5.6 59 17-82 5-63 (73)
225 4eyt_A Telomerase associated p 58.9 44 0.0015 23.5 8.7 58 15-80 9-66 (129)
226 3ts2_A Protein LIN-28 homolog 58.6 1.9 6.4E-05 33.4 -0.2 29 32-68 1-29 (148)
227 3j21_T 50S ribosomal protein L 53.8 32 0.0011 23.9 5.6 57 21-80 25-83 (86)
228 2npt_B Mitogen-activated prote 48.7 48 0.0016 23.5 5.7 61 25-93 35-96 (100)
229 1xn9_A 30S ribosomal protein S 48.2 32 0.0011 24.6 5.0 48 28-76 28-80 (101)
230 3lpe_A Putative transcription 47.7 30 0.001 24.0 4.8 32 44-80 39-70 (92)
231 2jrh_A Mitogen-activated prote 46.9 42 0.0014 23.4 5.2 63 25-95 19-82 (94)
232 1ywx_A 30S ribosomal protein S 46.2 37 0.0013 24.3 5.0 47 28-75 28-79 (102)
233 2g1d_A 30S ribosomal protein S 44.5 7.6 0.00026 27.8 1.1 47 28-75 29-80 (98)
234 4bby_A Alkyldihydroxyacetoneph 44.4 18 0.00062 34.5 4.1 55 25-80 350-408 (658)
235 2v94_A RPS24, 30S ribosomal pr 44.2 38 0.0013 24.5 4.9 47 28-75 37-88 (107)
236 2crl_A Copper chaperone for su 43.7 75 0.0026 21.7 7.0 57 19-82 21-78 (98)
237 3mfb_A Uncharacterized protein 41.0 36 0.0012 26.4 4.6 37 30-66 3-42 (157)
238 2c60_A Human mitogen-activated 41.0 39 0.0013 24.3 4.3 61 25-93 46-107 (111)
239 3u5c_Y RP50, 40S ribosomal pro 40.3 77 0.0026 23.9 6.2 47 28-75 33-84 (135)
240 2lfv_A Protein DAMX; cell divi 45.5 6.3 0.00021 28.6 0.0 56 26-82 30-86 (106)
241 1vq8_S 50S ribosomal protein L 37.4 46 0.0016 23.0 4.2 55 21-78 24-80 (85)
242 2id0_A Exoribonuclease 2; RNAs 37.3 14 0.00048 35.3 2.1 59 33-96 9-67 (644)
243 1wvf_A 4-cresol dehydrogenase 37.3 21 0.00072 32.9 3.3 44 34-78 217-262 (520)
244 2i9x_A Putative septation prot 36.9 42 0.0014 23.3 4.0 26 44-69 5-30 (87)
245 3h7h_B Transcription elongatio 36.3 62 0.0021 23.2 5.0 33 44-81 40-72 (106)
246 1yg0_A COP associated protein; 32.9 77 0.0026 18.6 6.3 57 20-82 4-63 (66)
247 3dxs_X Copper-transporting ATP 32.6 90 0.0031 19.3 6.3 59 19-83 4-66 (74)
248 1q8l_A Copper-transporting ATP 32.5 98 0.0034 19.8 8.3 62 15-82 7-72 (84)
249 2l3m_A Copper-ION-binding prot 31.5 87 0.003 18.8 6.3 58 19-82 7-68 (71)
250 2ia9_A Putative septation prot 31.3 57 0.0019 23.3 4.0 26 44-69 5-30 (100)
251 3u5e_X 60S ribosomal protein L 30.5 70 0.0024 24.3 4.6 56 21-79 81-138 (142)
252 2i9z_A Putative septation prot 30.1 62 0.0021 23.3 4.0 26 44-69 5-30 (105)
253 4a17_R RPL23A, 60S ribosomal p 30.1 65 0.0022 24.7 4.4 56 22-80 90-147 (150)
254 2f06_A Conserved hypothetical 29.6 1.6E+02 0.0055 21.4 6.7 25 60-84 111-135 (144)
255 3fut_A Dimethyladenosine trans 28.7 36 0.0012 28.5 3.0 34 19-53 111-144 (271)
256 3pm9_A Putative oxidoreductase 28.4 46 0.0016 30.3 3.9 53 27-80 195-251 (476)
257 2ki0_A DS119; beta-alpha-beta, 28.2 24 0.00083 19.5 1.2 13 15-27 2-14 (36)
258 4e8u_A Putative uncharacterize 28.0 2.1E+02 0.0071 22.4 7.1 46 30-78 33-81 (172)
259 1kvi_A Copper-transporting ATP 28.0 1.1E+02 0.0038 18.9 7.6 62 15-82 6-71 (79)
260 4hhu_A OR280; engineered prote 27.6 82 0.0028 23.2 4.4 73 18-95 42-130 (170)
261 2uuu_A Alkyldihydroxyacetoneph 27.5 35 0.0012 32.0 3.0 53 27-80 282-338 (584)
262 3swz_A Steroid 17-alpha-hydrox 27.2 76 0.0026 28.0 5.2 57 21-86 17-77 (494)
263 2zkr_s 60S ribosomal protein L 26.6 86 0.003 24.2 4.6 56 21-79 95-152 (156)
264 2xzm_P RPS24E; ribosome, trans 25.8 93 0.0032 23.8 4.6 47 28-75 31-82 (149)
265 3iz5_X 60S ribosomal protein L 25.6 71 0.0024 24.6 3.9 56 21-79 91-148 (152)
266 2kpo_A Rossmann 2X2 fold prote 25.1 55 0.0019 22.4 2.8 46 30-88 33-80 (110)
267 2ebw_A DNA repair protein REV1 24.9 1.4E+02 0.0046 20.2 5.1 32 12-44 9-40 (97)
268 3ulj_A LIN28B, DNA-binding pro 24.8 53 0.0018 22.8 2.8 9 59-67 19-27 (90)
269 2ofg_X Zinc-transporting ATPas 24.5 1.8E+02 0.006 20.0 7.6 60 18-83 9-72 (111)
270 2gu3_A YPMB protein; APC1927, 24.2 95 0.0033 23.1 4.4 47 23-69 68-127 (136)
271 3uzu_A Ribosomal RNA small sub 23.8 26 0.00089 29.5 1.2 35 19-53 115-149 (279)
272 1cpz_A Protein (COPZ); copper 23.7 1.2E+02 0.0041 17.8 7.8 57 20-82 3-63 (68)
273 3bb5_A Stress responsive alpha 23.3 2.1E+02 0.0071 20.5 6.9 59 19-77 22-91 (121)
274 4a4j_A Pacszia, cation-transpo 22.1 1.4E+02 0.0048 18.0 6.4 58 19-82 4-64 (69)
275 2e5p_A Protein PHF1, PHD finge 22.0 40 0.0014 22.2 1.6 11 60-70 37-47 (68)
276 2xmw_A PACS-N, cation-transpor 21.8 1.3E+02 0.0046 17.7 6.3 58 19-82 5-65 (71)
277 1e8g_A Vanillyl-alcohol oxidas 21.6 38 0.0013 31.5 2.0 43 35-78 250-294 (560)
278 1o57_A PUR operon repressor; p 21.6 1.5E+02 0.005 25.0 5.6 41 35-80 47-87 (291)
279 1i4w_A Mitochondrial replicati 21.5 40 0.0014 29.6 2.0 23 19-41 143-165 (353)
280 4a8j_B Elongator complex prote 20.9 1.8E+02 0.0062 24.4 5.7 46 20-65 168-221 (270)
281 2kt2_A Mercuric reductase; nme 20.7 1.4E+02 0.0049 17.6 6.2 57 20-82 3-62 (69)
282 2m0o_A PHD finger protein 1; t 20.5 44 0.0015 22.6 1.6 12 60-71 54-65 (79)
283 1aw0_A Menkes copper-transport 20.4 1.5E+02 0.005 17.7 4.4 58 19-82 5-66 (72)
284 3bgu_A Ferredoxin-like protein 20.3 1.5E+02 0.0052 21.1 4.7 58 18-76 22-89 (116)
285 1fme_A FSD-EY peptide; beta-BE 20.1 48 0.0017 17.2 1.3 12 31-42 14-25 (28)
286 2qyc_A Ferredoxin-like protein 20.1 2.2E+02 0.0074 19.5 5.7 51 24-75 11-71 (103)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=153.96 Aligned_cols=95 Identities=55% Similarity=0.915 Sum_probs=86.4
Q ss_pred CCCCCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc
Q 025468 4 NSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPI 83 (252)
Q Consensus 4 ~~s~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~ 83 (252)
+.+.+......+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~ 82 (116)
T 2cqd_A 3 SGSSGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 82 (116)
T ss_dssp CCCCCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCE
T ss_pred CCCCCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCc
Confidence 34455566778888999999999999999999999999999999999999989999999999999999999999999559
Q ss_pred cCCeeeEEEEcccCC
Q 025468 84 INGRRANCNLASLGA 98 (252)
Q Consensus 84 l~G~~l~v~~a~~~~ 98 (252)
|+|++|+|++++...
T Consensus 83 ~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 83 IDGRKANVNLAYLGA 97 (116)
T ss_dssp ETTEECEEEESTTTC
T ss_pred CCCEEEEEEEcccCC
Confidence 999999999997553
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=4.5e-23 Score=153.56 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=77.0
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.+.++|||+|||.++||++|+++|++||+|++|+|++|+.+|++||||||+|.+.++|++||+.+ +..|+|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 3
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=3.2e-22 Score=152.10 Aligned_cols=96 Identities=32% Similarity=0.482 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 6 SSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 6 s~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
+.++....+....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|
T Consensus 3 s~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 3 SGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp SSCCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 334455667788899999999999999999999999999999999999889999999999999999999999998 8889
Q ss_pred CCeeeEEEEcccCCCCC
Q 025468 85 NGRRANCNLASLGARRP 101 (252)
Q Consensus 85 ~G~~l~v~~a~~~~~~~ 101 (252)
+|++|+|++++.+..+.
T Consensus 83 ~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 83 GGRQIRTNWATRKPPAP 99 (115)
T ss_dssp TTEECEEEESSCCCCCS
T ss_pred CCEEEEEEEccCCCCCC
Confidence 99999999998665443
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.9e-22 Score=148.17 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=84.6
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+.....+....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 5 SSGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp CCCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3344567788899999999999999999999999999999999999889999999999999999999999998 889999
Q ss_pred eeeEEEEcccCCCC
Q 025468 87 RRANCNLASLGARR 100 (252)
Q Consensus 87 ~~l~v~~a~~~~~~ 100 (252)
++|+|++++.+..+
T Consensus 85 ~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 85 LILNVEWAKPSTNS 98 (103)
T ss_dssp EECEEEESSCCCCS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999865433
No 5
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.9e-22 Score=147.79 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=84.4
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+.....+....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 5 SSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp SSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3444567778899999999999999999999999999999999999989999999999999999999999998 889999
Q ss_pred eeeEEEEcccCCC
Q 025468 87 RRANCNLASLGAR 99 (252)
Q Consensus 87 ~~l~v~~a~~~~~ 99 (252)
++|+|++++....
T Consensus 85 ~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 KPIRVNKASAHNK 97 (105)
T ss_dssp CBCEEEETTTTSC
T ss_pred eEEEEEECCCCCc
Confidence 9999999986544
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=151.72 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=79.0
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+...++|||+||+++++|++|+++|++||.|++|+|++|+.++++||||||+|++.++|++||+.+ +.+|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
++...
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97543
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=5e-22 Score=151.16 Aligned_cols=89 Identities=25% Similarity=0.328 Sum_probs=81.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 445567799999999999999999999999999999999999989999999999999999999999998 8899999999
Q ss_pred EEEcccCCCC
Q 025468 91 CNLASLGARR 100 (252)
Q Consensus 91 v~~a~~~~~~ 100 (252)
|++++.+..+
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999865443
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=8.8e-22 Score=145.78 Aligned_cols=89 Identities=28% Similarity=0.499 Sum_probs=81.0
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
..++...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+..+..|+|++|+|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999999998999999999999999999999993388999999999
Q ss_pred EEcccCCCC
Q 025468 92 NLASLGARR 100 (252)
Q Consensus 92 ~~a~~~~~~ 100 (252)
++++.+..+
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999865443
No 9
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=145.95 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC
Q 025468 4 NSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP 82 (252)
Q Consensus 4 ~~s~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~ 82 (252)
+++........+...++|||+||+.++++++|+++|++||.|++|+|+.|+ +|+++|||||+|.+.++|++||+.+ +.
T Consensus 3 sg~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 3 SGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCCSSCCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 344444555667788999999999999999999999999999999999999 9999999999999999999999998 78
Q ss_pred ccCCeeeEEEEcccCC
Q 025468 83 IINGRRANCNLASLGA 98 (252)
Q Consensus 83 ~l~G~~l~v~~a~~~~ 98 (252)
.|+|++|+|++++.+.
T Consensus 82 ~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 82 TIKENIIKVAISNSGP 97 (100)
T ss_dssp ESSSCEEEEEECCCCS
T ss_pred EECCEEEEEEECCCCC
Confidence 8999999999997543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=145.16 Aligned_cols=88 Identities=30% Similarity=0.474 Sum_probs=81.3
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
.++...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999998 78899999999
Q ss_pred EEcccCCCC
Q 025468 92 NLASLGARR 100 (252)
Q Consensus 92 ~~a~~~~~~ 100 (252)
++++.+..+
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999865443
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.6e-22 Score=147.14 Aligned_cols=90 Identities=24% Similarity=0.420 Sum_probs=82.7
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
...+....++|||+||++++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3456677899999999999999999999999999999999999989999999999999999999999988 888999999
Q ss_pred EEEEcccCCCC
Q 025468 90 NCNLASLGARR 100 (252)
Q Consensus 90 ~v~~a~~~~~~ 100 (252)
+|++++....+
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999865433
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=148.67 Aligned_cols=85 Identities=16% Similarity=0.304 Sum_probs=77.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC----cc
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGD--ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP----II 84 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~--I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~----~l 84 (252)
...+....+|||+||++++|+|+|+++|++||. |++|+|++|+.+|++||||||+|.+.++|++||+.+ +. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 345677899999999999999999999999995 679999999999999999999999999999999998 54 49
Q ss_pred CCeeeEEEEccc
Q 025468 85 NGRRANCNLASL 96 (252)
Q Consensus 85 ~G~~l~v~~a~~ 96 (252)
+|++|+|++|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999974
No 13
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=145.85 Aligned_cols=90 Identities=24% Similarity=0.333 Sum_probs=81.5
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
.........++|||+||++++++++|+++|++||.|++|+|++|+ +++++|||||+|++.++|++||+.+ +..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 7 GALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 344566678999999999999999999999999999999999998 7999999999999999999999988 88999999
Q ss_pred eEEEEcccCCCC
Q 025468 89 ANCNLASLGARR 100 (252)
Q Consensus 89 l~v~~a~~~~~~ 100 (252)
|+|++++....+
T Consensus 86 l~v~~a~~~~~~ 97 (114)
T 2do0_A 86 MHVKMDERALPK 97 (114)
T ss_dssp CEEEECSCCCCC
T ss_pred EEEEEcccCCCC
Confidence 999999755433
No 14
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=145.17 Aligned_cols=90 Identities=17% Similarity=0.365 Sum_probs=81.4
Q ss_pred CCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 9 NIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLT-GRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 9 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t-g~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+.....+...++|||+||++++++++|+++|+.|| |++|+|++|+.+ ++++|||||+|.+.++|++|| .+ +..|+|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34455667789999999999999999999999999 999999999987 999999999999999999999 77 889999
Q ss_pred eeeEEEEcccCCCC
Q 025468 87 RRANCNLASLGARR 100 (252)
Q Consensus 87 ~~l~v~~a~~~~~~ 100 (252)
++|+|++++.+..+
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999865544
No 15
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=153.37 Aligned_cols=89 Identities=29% Similarity=0.442 Sum_probs=82.2
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..++...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345667799999999999999999999999999999999999989999999999999999999999998 8889999999
Q ss_pred EEEcccCCCC
Q 025468 91 CNLASLGARR 100 (252)
Q Consensus 91 v~~a~~~~~~ 100 (252)
|++++.+..+
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999866544
No 16
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.5e-21 Score=144.40 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=81.5
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
++.....+...++|||+||++++++++|+++|++|| |++|+|++|+.+++++|||||+|++.++|++|| .+ +.+|+|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 5 SSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 344455677789999999999999999999999997 999999999989999999999999999999999 77 889999
Q ss_pred eeeEEEEcccCCC
Q 025468 87 RRANCNLASLGAR 99 (252)
Q Consensus 87 ~~l~v~~a~~~~~ 99 (252)
++|+|++++.+..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 9999999986543
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=9.9e-22 Score=150.05 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=78.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..++...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+ +.+|+|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 445677899999999999999999999999999999999999889999999999999999999999999 8899999999
Q ss_pred EEEcc
Q 025468 91 CNLAS 95 (252)
Q Consensus 91 v~~a~ 95 (252)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 18
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=144.62 Aligned_cols=91 Identities=31% Similarity=0.480 Sum_probs=82.9
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+......+...++|||+||++++|+++|+++|++||.|++|+|+.+ +++++|||||+|.+.++|++||+.+ +..|+|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4445566778999999999999999999999999999999999998 8999999999999999999999998 888999
Q ss_pred eeeEEEEcccCCCC
Q 025468 87 RRANCNLASLGARR 100 (252)
Q Consensus 87 ~~l~v~~a~~~~~~ 100 (252)
++|+|++++.+..+
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 83 KPLYVALAQRKEER 96 (103)
T ss_dssp SBCEEEECSSCCCC
T ss_pred cEEEEEEecccccC
Confidence 99999999865544
No 19
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.4e-22 Score=147.71 Aligned_cols=93 Identities=34% Similarity=0.692 Sum_probs=84.2
Q ss_pred CCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCC
Q 025468 7 SSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIING 86 (252)
Q Consensus 7 ~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G 86 (252)
++.....++...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+..+..|+|
T Consensus 5 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g 84 (105)
T 2dh8_A 5 SSGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 84 (105)
T ss_dssp CCCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETT
T ss_pred CCCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECC
Confidence 34455667888999999999999999999999999999999999999889999999999999999999999986678999
Q ss_pred eeeEEEEcccCCC
Q 025468 87 RRANCNLASLGAR 99 (252)
Q Consensus 87 ~~l~v~~a~~~~~ 99 (252)
++|+|++++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 9999999975543
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=143.45 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=80.8
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+..........++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 6 SGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3344555677899999999999999999999999999999999999988999999999999999999999998 888999
Q ss_pred eeeEEEEcc
Q 025468 87 RRANCNLAS 95 (252)
Q Consensus 87 ~~l~v~~a~ 95 (252)
++|+|++++
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 21
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.1e-21 Score=144.79 Aligned_cols=91 Identities=32% Similarity=0.552 Sum_probs=82.6
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCe
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGR 87 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~ 87 (252)
+......+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+. +..|+|+
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~ 83 (103)
T 2cqg_A 5 SSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGR 83 (103)
T ss_dssp CSSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTE
T ss_pred CCCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCe
Confidence 444566778889999999999999999999999999999999999998999999999999999999999995 6689999
Q ss_pred eeEEEEcccCCC
Q 025468 88 RANCNLASLGAR 99 (252)
Q Consensus 88 ~l~v~~a~~~~~ 99 (252)
+|+|++++.+..
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cqg_A 84 WCDCKLPNSKQS 95 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEEecCCCCc
Confidence 999999986543
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=145.38 Aligned_cols=94 Identities=24% Similarity=0.382 Sum_probs=84.7
Q ss_pred CCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHhc--CCc
Q 025468 7 SSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISD-KLTGRSKGYGFVTFKEPEAAKKACEDA--TPI 83 (252)
Q Consensus 7 ~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d-~~tg~skG~aFV~F~~~e~A~~Ai~~~--~~~ 83 (252)
.+......+...++|||+||++++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.+ +..
T Consensus 4 ~s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 4 GSSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp CCCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CCCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 34445667788899999999999999999999999999999999999 789999999999999999999999997 678
Q ss_pred cCCeeeEEEEcccCCCC
Q 025468 84 INGRRANCNLASLGARR 100 (252)
Q Consensus 84 l~G~~l~v~~a~~~~~~ 100 (252)
|+|++|+|++++.+...
T Consensus 84 ~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 84 LYGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSSCBCEEEECCCCCCC
T ss_pred ECCCEEEEEeCCCCCCC
Confidence 99999999999865443
No 23
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=2.7e-21 Score=144.50 Aligned_cols=89 Identities=22% Similarity=0.275 Sum_probs=80.8
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC---
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING--- 86 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G--- 86 (252)
....+...++|||+||+.++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.+ +..+.|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 8 SESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 34455678999999999999999999999999999999999998 8999999999999999999999998 777888
Q ss_pred eeeEEEEcccCCCC
Q 025468 87 RRANCNLASLGARR 100 (252)
Q Consensus 87 ~~l~v~~a~~~~~~ 100 (252)
+.|+|++++....+
T Consensus 87 ~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 87 SSLVVKFADTDKES 100 (105)
T ss_dssp SCCEEEESCSSCCC
T ss_pred ccEEEEECccCccc
Confidence 99999999866544
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=148.49 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-CccCCeeeEEEEc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PIINGRRANCNLA 94 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~l~G~~l~v~~a 94 (252)
+++|||+|||.++||++|+++|++|| +|++|+|++|+.+|++||||||+|.+.++|++||+.+ + ..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999987 4 4699999999999
Q ss_pred ccCCC
Q 025468 95 SLGAR 99 (252)
Q Consensus 95 ~~~~~ 99 (252)
+.+.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.9e-22 Score=146.69 Aligned_cols=88 Identities=32% Similarity=0.396 Sum_probs=81.0
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999999999889999999999999999999999998 88899999999
Q ss_pred EEcccCCCC
Q 025468 92 NLASLGARR 100 (252)
Q Consensus 92 ~~a~~~~~~ 100 (252)
++++....+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999865443
No 26
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=1.1e-21 Score=146.81 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=82.0
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc---C
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII---N 85 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l---~ 85 (252)
.....+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.+ +..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 34556778899999999999999999999999999999999999989999999999999999999999998 6676 8
Q ss_pred CeeeEEEEcccCCC
Q 025468 86 GRRANCNLASLGAR 99 (252)
Q Consensus 86 G~~l~v~~a~~~~~ 99 (252)
|++|+|++++.+..
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999986543
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=145.43 Aligned_cols=87 Identities=36% Similarity=0.597 Sum_probs=80.7
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
....+.++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556799999999999999999999999999999999999989999999999999999999999998 88899999999
Q ss_pred EEcccCCC
Q 025468 92 NLASLGAR 99 (252)
Q Consensus 92 ~~a~~~~~ 99 (252)
++++....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99986544
No 28
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=141.89 Aligned_cols=83 Identities=33% Similarity=0.569 Sum_probs=78.4
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999988 88899999999999
Q ss_pred ccCC
Q 025468 95 SLGA 98 (252)
Q Consensus 95 ~~~~ 98 (252)
+.+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7553
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=147.80 Aligned_cols=85 Identities=33% Similarity=0.563 Sum_probs=79.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
++...++|||+||+.++++++|+++|++||.|++|+|+.|+ +|+++|||||+|++.++|++||+.+ +..|+|++|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667999999999999999999999999999999999999 9999999999999999999999998 889999999999
Q ss_pred EcccCCC
Q 025468 93 LASLGAR 99 (252)
Q Consensus 93 ~a~~~~~ 99 (252)
+++....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9985543
No 30
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=1.3e-21 Score=141.29 Aligned_cols=83 Identities=33% Similarity=0.693 Sum_probs=77.1
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
..++...++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.++.+|+|++|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 45667889999999999999999999999999999999999998999999999999999999999987788899999999
Q ss_pred EEc
Q 025468 92 NLA 94 (252)
Q Consensus 92 ~~a 94 (252)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 31
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=9.9e-22 Score=148.60 Aligned_cols=89 Identities=30% Similarity=0.608 Sum_probs=77.9
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
..++...++|||+||++++++++|+++|++||.|++|+|++|+.+|++||||||+|.+.++|++||+.++..|+|++|+|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 44567789999999999999999999999999999999999998999999999999999999999999998899999999
Q ss_pred EEcccCCCC
Q 025468 92 NLASLGARR 100 (252)
Q Consensus 92 ~~a~~~~~~ 100 (252)
+++..+..+
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999865443
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=142.73 Aligned_cols=90 Identities=33% Similarity=0.413 Sum_probs=82.5
Q ss_pred CCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC
Q 025468 7 SSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 7 ~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
.++.........++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+
T Consensus 4 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 4 GSSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34445566777899999999999999999999999999999999999988999999999999999999999998 78899
Q ss_pred CeeeEEEEccc
Q 025468 86 GRRANCNLASL 96 (252)
Q Consensus 86 G~~l~v~~a~~ 96 (252)
|++|+|++++.
T Consensus 84 g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 GRRIRVSGPSS 94 (95)
T ss_dssp TEEEEEECCSC
T ss_pred CEEEEEEecCC
Confidence 99999999874
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=145.91 Aligned_cols=91 Identities=27% Similarity=0.346 Sum_probs=82.1
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-------CC
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-------TP 82 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-------~~ 82 (252)
....+....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 33456677899999999999999999999999999999999999989999999999999999999999988 46
Q ss_pred ccCCeeeEEEEcccCCCC
Q 025468 83 IINGRRANCNLASLGARR 100 (252)
Q Consensus 83 ~l~G~~l~v~~a~~~~~~ 100 (252)
.|+|++|+|++++.+..+
T Consensus 87 ~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp ESSSCEEEEECCCCCCCC
T ss_pred EEcCEEEEEEECCCCccC
Confidence 799999999999865444
No 34
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=7e-22 Score=154.06 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=81.6
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC--
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILE--AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP-- 82 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~-- 82 (252)
......++...++|||+||++++||++|+++|++||.|+. |+|++|+.+|++||||||+|.+. +|++||+.+ +.
T Consensus 13 ~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 13 QGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp CCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 3344556678899999999999999999999999999977 99999999999999999999999 999999999 77
Q ss_pred --ccCCeeeEEEEcccCC
Q 025468 83 --IINGRRANCNLASLGA 98 (252)
Q Consensus 83 --~l~G~~l~v~~a~~~~ 98 (252)
+|+|++|+|++++...
T Consensus 92 ~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp SCCGGGCCCCCEECCCSC
T ss_pred CccCCCEEEEEEECCCCC
Confidence 8999999999997643
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=142.98 Aligned_cols=85 Identities=28% Similarity=0.439 Sum_probs=79.3
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEA-VIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
...++|||+||+.++++++|+++|++||.|++| +|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 99999889999999999999999999999988 8889999999999
Q ss_pred cccCCCC
Q 025468 94 ASLGARR 100 (252)
Q Consensus 94 a~~~~~~ 100 (252)
++.+..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9865443
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-21 Score=146.26 Aligned_cols=90 Identities=26% Similarity=0.306 Sum_probs=82.7
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDIL--------EAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA- 80 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~- 80 (252)
....++...++|||+||++++++++|+++|++||.|+ +|+|+.|+.+++++|||||+|.+.++|++||+.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 7 GDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 3455778889999999999999999999999999999 6999999889999999999999999999999998
Q ss_pred CCccCCeeeEEEEcccCCC
Q 025468 81 TPIINGRRANCNLASLGAR 99 (252)
Q Consensus 81 ~~~l~G~~l~v~~a~~~~~ 99 (252)
+..|+|++|+|++++.+..
T Consensus 87 g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TCEETTEECEEECSSCCCC
T ss_pred CCccCCCEEEEEECCCCCC
Confidence 8899999999999986543
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=144.93 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=81.7
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
.........++|||+||++++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+ +..|+|++
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 33445567789999999999999999999999999999999999989999999999999999999999988 88999999
Q ss_pred eEEEEcccCC
Q 025468 89 ANCNLASLGA 98 (252)
Q Consensus 89 l~v~~a~~~~ 98 (252)
|+|++++.+.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998643
No 38
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=144.26 Aligned_cols=88 Identities=28% Similarity=0.408 Sum_probs=80.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc-cCCee
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDK-YGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI-INGRR 88 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~-l~G~~ 88 (252)
+.+....++|||+||++++|+++|+++|++ ||.|++|+|++|+ +++++|||||+|.+.++|++||+.+ +.. |+|++
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345667899999999999999999999999 9999999999999 9999999999999999999999999 778 99999
Q ss_pred eEEEEcccCCCC
Q 025468 89 ANCNLASLGARR 100 (252)
Q Consensus 89 l~v~~a~~~~~~ 100 (252)
|+|++++.+..+
T Consensus 82 l~v~~a~~~~~~ 93 (104)
T 2dhg_A 82 VRLSVAIPKASR 93 (104)
T ss_dssp CCCCBCCCCCSC
T ss_pred EEEEEccCCCcC
Confidence 999999765444
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.2e-21 Score=141.83 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
....++...++|||+||++++++++|+++|++||.|++|+|++|+. .+||||||+|.+.++|++||+.+ +..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3455677889999999999999999999999999999999999963 36999999999999999999988 78899999
Q ss_pred eEEEEcccCCCC
Q 025468 89 ANCNLASLGARR 100 (252)
Q Consensus 89 l~v~~a~~~~~~ 100 (252)
|+|++++....+
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2cqi_A 85 VKVNWATTPSSQ 96 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEECCCCccc
Confidence 999999865443
No 40
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=2.8e-21 Score=145.75 Aligned_cols=91 Identities=24% Similarity=0.315 Sum_probs=82.8
Q ss_pred CCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 9 NIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 9 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
......+...++|||+||++++++++|+++|++||.|++|+|+.|+.+|+++|||||+|.+.++|++||+.+ +..|+|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 344556677899999999999999999999999999999999999889999999999999999999999988 8899999
Q ss_pred eeEEEEcccCCC
Q 025468 88 RANCNLASLGAR 99 (252)
Q Consensus 88 ~l~v~~a~~~~~ 99 (252)
+|+|++++.+..
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 999999986543
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=4.6e-21 Score=137.02 Aligned_cols=80 Identities=33% Similarity=0.514 Sum_probs=76.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
.++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..++|++|+|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999999889999999999999999999999998 8899999999999975
Q ss_pred C
Q 025468 97 G 97 (252)
Q Consensus 97 ~ 97 (252)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=140.27 Aligned_cols=91 Identities=29% Similarity=0.474 Sum_probs=81.1
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
++.....+...++|||+||++++++++|+++|++||.|++|+|++|+. .++|||||+|.+.++|++||+.+ +..|+|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 444456677889999999999999999999999999999999999863 38999999999999999999998 888999
Q ss_pred eeeEEEEcccCCCC
Q 025468 87 RRANCNLASLGARR 100 (252)
Q Consensus 87 ~~l~v~~a~~~~~~ 100 (252)
++|+|++++.+..+
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 83 RKIEVNNATARVMT 96 (103)
T ss_dssp EECEEEECCSSCCC
T ss_pred EEEEEEEcccCCCC
Confidence 99999999865443
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.5e-21 Score=147.69 Aligned_cols=81 Identities=30% Similarity=0.498 Sum_probs=74.2
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
..++|||+||++++||++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.+ +.+|+|++|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999996 458999999999999999999998 889999999999997
Q ss_pred cCCC
Q 025468 96 LGAR 99 (252)
Q Consensus 96 ~~~~ 99 (252)
.+..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=141.78 Aligned_cols=88 Identities=31% Similarity=0.388 Sum_probs=77.8
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+......+...++|||+||++++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.+ +..|+|
T Consensus 6 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 6 SGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp ------CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33445677788999999999999999999999999999999999998 5999999999999999999999988 889999
Q ss_pred eeeEEEEccc
Q 025468 87 RRANCNLASL 96 (252)
Q Consensus 87 ~~l~v~~a~~ 96 (252)
++|+|++++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999999864
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=142.47 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=78.2
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKL---TGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~---tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
+...++|||+||++++++++|+++|++||.|++|+|++++. +++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35678999999999999999999999999999999999876 6689999999999999999999998 8899999999
Q ss_pred EEEcccCCC
Q 025468 91 CNLASLGAR 99 (252)
Q Consensus 91 v~~a~~~~~ 99 (252)
|++++....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999986543
No 46
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=138.75 Aligned_cols=81 Identities=35% Similarity=0.531 Sum_probs=75.7
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..++|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999998 88999999999999
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=3.2e-21 Score=138.46 Aligned_cols=81 Identities=35% Similarity=0.490 Sum_probs=77.0
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..++|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999999999889999999999999999999999988 8899999999999
Q ss_pred cc
Q 025468 94 AS 95 (252)
Q Consensus 94 a~ 95 (252)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 48
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=3.4e-21 Score=148.71 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=82.8
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
........++|||+||++++|+++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3456667889999999999999999999999999999999999989999999999999999999999988 889999999
Q ss_pred EEEEcccCCCC
Q 025468 90 NCNLASLGARR 100 (252)
Q Consensus 90 ~v~~a~~~~~~ 100 (252)
+|++++.+..+
T Consensus 95 ~v~~a~~~~~~ 105 (126)
T 3ex7_B 95 SVDWCFVRGPP 105 (126)
T ss_dssp EEEESEESSSC
T ss_pred EEEEecCCCCC
Confidence 99999865444
No 49
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=2e-21 Score=151.42 Aligned_cols=89 Identities=31% Similarity=0.418 Sum_probs=82.0
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
....+....++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+ +.+|+|++
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33456677899999999999999999999999999999999999989999999999999999999999998 88899999
Q ss_pred eEEEEcccCC
Q 025468 89 ANCNLASLGA 98 (252)
Q Consensus 89 l~v~~a~~~~ 98 (252)
|+|++++.++
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999997643
No 50
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-21 Score=142.15 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=79.4
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
....+...++|||+||++++++++|+++|++||.|++++++.++.+|+++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 8 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3445667799999999999999999999999999999999999889999999999999999999999999 789999999
Q ss_pred EEEEccc
Q 025468 90 NCNLASL 96 (252)
Q Consensus 90 ~v~~a~~ 96 (252)
+|++++.
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9999864
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=9.7e-22 Score=143.33 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=71.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYG--DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
.+|||+||++++|+++|+++|++|| .|++|+|++|+.+|++||||||+|.+.++|++||+.+ +.+++|++|+|++++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999999999999999999999999999999999 889999999999997
Q ss_pred cC
Q 025468 96 LG 97 (252)
Q Consensus 96 ~~ 97 (252)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=139.95 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=78.7
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILE--------AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP 82 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~ 82 (252)
.......++|||+||++++++++|+++|++||.|++ |+|++|+.+|++||||||+|.+.++|++||+.+ +.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445567899999999999999999999999999999 999999889999999999999999999999988 88
Q ss_pred ccCCeeeEEEEcc
Q 025468 83 IINGRRANCNLAS 95 (252)
Q Consensus 83 ~l~G~~l~v~~a~ 95 (252)
.++|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=140.42 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=78.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee---
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDIL-EAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR--- 88 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~-~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~--- 88 (252)
.....++|||+||++++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.+ +..++|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 9999999989999999999999999999999998 88899999
Q ss_pred -eEEEEcccC
Q 025468 89 -ANCNLASLG 97 (252)
Q Consensus 89 -l~v~~a~~~ 97 (252)
|+|++++..
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998754
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=9.1e-21 Score=139.58 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
.++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+ +..++|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999999989999999999999999999999998 8899999999999975
Q ss_pred C
Q 025468 97 G 97 (252)
Q Consensus 97 ~ 97 (252)
+
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 55
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.4e-20 Score=150.60 Aligned_cols=86 Identities=22% Similarity=0.278 Sum_probs=80.1
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||++++|+++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++||+.| +.+|+|++|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3356799999999999999999999999999999999999989999999999999999999999998 889999999999
Q ss_pred EcccCCC
Q 025468 93 LASLGAR 99 (252)
Q Consensus 93 ~a~~~~~ 99 (252)
+++....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986543
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=139.58 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=76.2
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...+...++|||+||++++|+++|+++|++||.|++|+|..+ ++++|||||+|++.++|++||+.+ +.+|+|++|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345667899999999999999999999999999999999664 458999999999999999999988 8899999999
Q ss_pred EEEcccCCC
Q 025468 91 CNLASLGAR 99 (252)
Q Consensus 91 v~~a~~~~~ 99 (252)
|++++....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999976543
No 57
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.9e-21 Score=145.02 Aligned_cols=85 Identities=31% Similarity=0.588 Sum_probs=78.6
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+..+..|+|++|+|++++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 44589999999999999999999999999999999999989999999999999999999999986778999999999998
Q ss_pred cCCCC
Q 025468 96 LGARR 100 (252)
Q Consensus 96 ~~~~~ 100 (252)
.+..+
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 65443
No 58
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=2.6e-21 Score=141.93 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=75.0
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..+....++|||+||++++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 9 SSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ------CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 345556799999999999999999999999999999999999889999999999999999999999988 8899999999
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
|+++..
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998863
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=141.94 Aligned_cols=86 Identities=35% Similarity=0.565 Sum_probs=80.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+|+++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 556677899999999999999999999999999999999999889999999999999999999999988 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++.+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999754
No 60
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.9e-21 Score=144.96 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=77.3
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 355689999999999999999999999999999999999988999999999999999999999 77 8889999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
++.+.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 98543
No 61
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=151.85 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=75.7
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYG--DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
..++|||+||++++||++|+++|++|| +|++|+|++|+.+|++||||||+|.+.++|++||+.+ +.+|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999999999999999999999999999999998 8999999999999
Q ss_pred ccc
Q 025468 94 ASL 96 (252)
Q Consensus 94 a~~ 96 (252)
++.
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 62
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=139.40 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=78.5
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILE-AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRR 88 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~ 88 (252)
.........++|||+||++++|+++|+++|+.||.|++ |+|+.| .+|+++|||||+|++.++|++||+..+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 33455677899999999999999999999999999998 889888 4999999999999999999999998778899999
Q ss_pred eEEEEcccC
Q 025468 89 ANCNLASLG 97 (252)
Q Consensus 89 l~v~~a~~~ 97 (252)
|+|.++...
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999998643
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=136.45 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=76.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGR-SKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~-skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
...++|||+||+.++++++|+++|++||.|++|+|+.|+.++. ++|||||+|.+.++|++||+.+ +..++|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987766 8999999999999999999988 8899999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
+....
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97543
No 64
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=138.29 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=76.1
Q ss_pred CCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 9 NIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 9 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
+.....+...++|||+||++++++++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+.+ +..|+|+
T Consensus 6 s~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 6 SGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 3334467788999999999999999999999999987 56677 48999999999999999999999988 7889999
Q ss_pred eeEEEEcccCC
Q 025468 88 RANCNLASLGA 98 (252)
Q Consensus 88 ~l~v~~a~~~~ 98 (252)
+|+|++++.+.
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999998653
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3.7e-21 Score=143.17 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCcCcEEEEcCCCC------CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC-
Q 025468 15 DTTLTKVFVGGLAW------ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING- 86 (252)
Q Consensus 15 ~~~~~~lfVgnLp~------~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G- 86 (252)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.||++||||||+|.+.++|++||+.+ +..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44578999999999 9999999999999999999999999989999999999999999999999998 889999
Q ss_pred eeeEEEEccc
Q 025468 87 RRANCNLASL 96 (252)
Q Consensus 87 ~~l~v~~a~~ 96 (252)
+.|+|++++.
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999974
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=2.3e-20 Score=136.03 Aligned_cols=84 Identities=29% Similarity=0.553 Sum_probs=77.3
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.+ +..++|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567799999999999999999999999999999999985 7899999999999999999999998 88899999999
Q ss_pred EEcccCC
Q 025468 92 NLASLGA 98 (252)
Q Consensus 92 ~~a~~~~ 98 (252)
++++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9997543
No 67
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=140.39 Aligned_cols=86 Identities=20% Similarity=0.336 Sum_probs=78.2
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHhcC---CccCCeee
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGD-ILEAVII-SDKLTGRSKGYGFVTFKEPEAAKKACEDAT---PIINGRRA 89 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~v~i~-~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~l~G~~l 89 (252)
+...++|||+||++++++++|+++|++||. |++|+|+ .|+.+|++||||||+|.+.++|++||+.++ ..++|++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345799999999999999999999999998 9999998 888889999999999999999999999873 67999999
Q ss_pred EEEEcccCCCC
Q 025468 90 NCNLASLGARR 100 (252)
Q Consensus 90 ~v~~a~~~~~~ 100 (252)
+|++++.+...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999865443
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=146.52 Aligned_cols=84 Identities=33% Similarity=0.451 Sum_probs=77.9
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
....+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|++||+.+ +..|+|++|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3456677899999999999999999999999999999999999889999999999999999999999998 788999999
Q ss_pred EEEEc
Q 025468 90 NCNLA 94 (252)
Q Consensus 90 ~v~~a 94 (252)
+|++|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 69
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=9.8e-21 Score=137.07 Aligned_cols=80 Identities=21% Similarity=0.521 Sum_probs=75.9
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
.+.++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|| .+ +..++|++|+|+++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999 77 88999999999999
Q ss_pred cc
Q 025468 95 SL 96 (252)
Q Consensus 95 ~~ 96 (252)
+.
T Consensus 83 ~~ 84 (89)
T 3ucg_A 83 RT 84 (89)
T ss_dssp TT
T ss_pred cC
Confidence 75
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=137.18 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=74.7
Q ss_pred CCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc---CCccC
Q 025468 9 NIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA---TPIIN 85 (252)
Q Consensus 9 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~---~~~l~ 85 (252)
..........++|||+||+++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ +.+|+
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 6 SGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 344556677899999999999999999999999999999998775 799999999999999999976 46799
Q ss_pred CeeeEEEEcccCCC
Q 025468 86 GRRANCNLASLGAR 99 (252)
Q Consensus 86 G~~l~v~~a~~~~~ 99 (252)
|++|+|++++.+..
T Consensus 80 Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 80 NQPIYIQYSNHKEL 93 (101)
T ss_dssp TEECEEEECSCSSC
T ss_pred CcEEEEEEcCcccC
Confidence 99999999985443
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=141.92 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCCCCCCCCCcCcEEEEcCCCCCCCHHHHH---HHhccCCCeEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHhc
Q 025468 7 SSNIGQFGDTTLTKVFVGGLAWETPREALR---EHFDKYGDILEAVIISDKLTG---RSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 7 ~~~~~~~~~~~~~~lfVgnLp~~~tee~L~---~~F~~~G~I~~v~i~~d~~tg---~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.++.........++|||+||++++++++|+ ++|++||+|++|+|++|+.++ +++|||||+|++.++|++||+.|
T Consensus 4 ~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 4 GSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp CSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 344455666778999999999999999999 999999999999999998654 45699999999999999999998
Q ss_pred -CCccCCeeeEEEEcccCC
Q 025468 81 -TPIINGRRANCNLASLGA 98 (252)
Q Consensus 81 -~~~l~G~~l~v~~a~~~~ 98 (252)
+.+|+|++|+|++++.+.
T Consensus 84 ng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEETTEEEEEESCCCCS
T ss_pred CCCEECCEEEEEEeccccc
Confidence 888999999999997543
No 72
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=139.27 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=75.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
.......++|||+||++++||++|+++|+.||. ++|+|++|+ +|++||||||+|++.++|++||+..+.+|+|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 445677899999999999999999999999994 599999998 999999999999999999999964488899999999
Q ss_pred EEcccC
Q 025468 92 NLASLG 97 (252)
Q Consensus 92 ~~a~~~ 97 (252)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998743
No 73
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-21 Score=146.76 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDI-LEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~ 90 (252)
...+...++|||+||++++|+++|+++|+.||.| ++|+|++|+ +|++||||||+|.+.++|++||+..+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 87 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEE
Confidence 3455677999999999999999999999999999 899999999 99999999999999999999998867789999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|+++..+
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999754
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=3.2e-20 Score=139.11 Aligned_cols=83 Identities=28% Similarity=0.398 Sum_probs=77.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.......++|||+||++++++++|+++|++||.|++|+|++++ +|+++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455678999999999999999999999999999999999999 9999999999999999999999998 8899999999
Q ss_pred EEEcc
Q 025468 91 CNLAS 95 (252)
Q Consensus 91 v~~a~ 95 (252)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.9e-20 Score=137.10 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=73.2
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC----
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING---- 86 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G---- 86 (252)
.......++|||+||++++++++|+++|++||+|++|+|+.| |||||+|++.++|++||+.| +.+|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 445567899999999999999999999999999999999886 89999999999999999999 788999
Q ss_pred -eeeEEEEcccCC
Q 025468 87 -RRANCNLASLGA 98 (252)
Q Consensus 87 -~~l~v~~a~~~~ 98 (252)
+.|+|++++.+.
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998643
No 76
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=9.1e-21 Score=148.77 Aligned_cols=90 Identities=27% Similarity=0.482 Sum_probs=82.6
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
...++...++|||+||++++|+++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.+ +..|+|++|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3556677889999999999999999999999999999999999989999999999999999999999998 888999999
Q ss_pred EEEEcccCCCC
Q 025468 90 NCNLASLGARR 100 (252)
Q Consensus 90 ~v~~a~~~~~~ 100 (252)
+|++++....+
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999865443
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.5e-21 Score=142.07 Aligned_cols=87 Identities=29% Similarity=0.526 Sum_probs=80.4
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
..+...++|||+||+.++++++|+++|++||.|++|+|++++.+|+++|||||+|.+.++|++||+.+ +..++|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999998 88899999999
Q ss_pred EEcccCCC
Q 025468 92 NLASLGAR 99 (252)
Q Consensus 92 ~~a~~~~~ 99 (252)
++++....
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99986543
No 78
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=141.16 Aligned_cols=80 Identities=11% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C--CccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T--PIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~--~~l~G~~l~ 90 (252)
++...++|||+||++++||++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ + .+|+|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999875 699999999999999999976 2 679999999
Q ss_pred EEEcccCCC
Q 025468 91 CNLASLGAR 99 (252)
Q Consensus 91 v~~a~~~~~ 99 (252)
|++++.+..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999976543
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=140.64 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCN 92 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~ 92 (252)
..+...++|||+||++++|+++|+++|++||.|++|+|++|+. |++||||||+|.+.++|++||+..+..++|+.|.|+
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 84 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEE
Confidence 4567789999999999999999999999999999999999995 999999999999999999999933889999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
+++.
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9874
No 80
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=136.79 Aligned_cols=89 Identities=35% Similarity=0.486 Sum_probs=78.5
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+......+...++|||+||++++++++|+++|+.| .+|+++.++.+++++|||||+|.+.++|++||+.+ +.+|+|
T Consensus 5 s~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 5 SSGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 33445566788999999999999999999999977 36788889889999999999999999999999988 889999
Q ss_pred eeeEEEEcccCCC
Q 025468 87 RRANCNLASLGAR 99 (252)
Q Consensus 87 ~~l~v~~a~~~~~ 99 (252)
++|+|++++.+..
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 NKVTLDWAKPKGE 94 (102)
T ss_dssp EECEEEECCCCCS
T ss_pred eEEEEEEecCCCC
Confidence 9999999986543
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=138.69 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCCCcCcEEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C--CccCC
Q 025468 11 GQFGDTTLTKVFVGGLAW-ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T--PIING 86 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~--~~l~G 86 (252)
........++|||+||++ ++||++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ + .+|+|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344455789999999999 9999999999999999999999876 479999999999999999987 3 45999
Q ss_pred eeeEEEEcccCC
Q 025468 87 RRANCNLASLGA 98 (252)
Q Consensus 87 ~~l~v~~a~~~~ 98 (252)
++|+|++++..+
T Consensus 82 r~l~V~~a~~~~ 93 (102)
T 1x4d_A 82 KPVRVHLSQKYK 93 (102)
T ss_dssp EECEEEEECCCT
T ss_pred cEEEEEECCCCC
Confidence 999999998543
No 82
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-21 Score=134.10 Aligned_cols=76 Identities=36% Similarity=0.757 Sum_probs=73.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
++|||+|||.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.++..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999998999999999999999999999999998899999999987
No 83
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=8.7e-20 Score=136.08 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=72.9
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
......++|||+||++++|+++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 344567999999999999999999999999999999985 459999999999999999998 88899999999
Q ss_pred EEcccCCCCCC
Q 025468 92 NLASLGARRPR 102 (252)
Q Consensus 92 ~~a~~~~~~~~ 102 (252)
++++....+.+
T Consensus 78 ~~a~~~~~~~~ 88 (103)
T 2dgu_A 78 VFAKPPDQKRK 88 (103)
T ss_dssp EECCCCCCCCC
T ss_pred EEcCCCcccch
Confidence 99987655443
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=3.9e-20 Score=142.36 Aligned_cols=81 Identities=25% Similarity=0.504 Sum_probs=76.3
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||++++|+++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++|| .+ +..|+|++|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999 67 88999999999999
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
+..
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=5.2e-20 Score=147.35 Aligned_cols=88 Identities=27% Similarity=0.528 Sum_probs=81.1
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.......++|||+||++++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 64 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 64 HMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 334566899999999999999999999999999999999999889999999999999999999999998 8889999999
Q ss_pred EEEcccCCC
Q 025468 91 CNLASLGAR 99 (252)
Q Consensus 91 v~~a~~~~~ 99 (252)
|++++....
T Consensus 144 v~~a~~~~~ 152 (158)
T 2kn4_A 144 VQMARYGRP 152 (158)
T ss_dssp EEEECCSSC
T ss_pred EEECCCCCC
Confidence 999986543
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=136.30 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=73.6
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C--Ccc
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T--PII 84 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~--~~l 84 (252)
+..........++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.+ + ..|
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3334445567799999999999999999999999999999998764 789999999999999999987 3 459
Q ss_pred CCeeeEEEEcccCC
Q 025468 85 NGRRANCNLASLGA 98 (252)
Q Consensus 85 ~G~~l~v~~a~~~~ 98 (252)
+|++|+|++++.+.
T Consensus 79 ~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 79 AGQQAFFNYSTSKR 92 (104)
T ss_dssp SSSBCEEEECSSSS
T ss_pred CCEEEEEEEccCcc
Confidence 99999999998644
No 87
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=5.1e-20 Score=148.95 Aligned_cols=89 Identities=24% Similarity=0.314 Sum_probs=80.3
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.......++|||+||++++++++|+++|++||.|++|+|+.++.+|+++|||||+|.+.++|++||+.| +..|+|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445566789999999999999999999999999999999999889999999999999999999999998 8889999999
Q ss_pred EEEcccCCCC
Q 025468 91 CNLASLGARR 100 (252)
Q Consensus 91 v~~a~~~~~~ 100 (252)
|.+++....+
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999865543
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=137.72 Aligned_cols=84 Identities=17% Similarity=0.388 Sum_probs=77.1
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc------
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII------ 84 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l------ 84 (252)
...+...++|||+||+.++++++|+++|++||.|++|+|++|+ ++++||||||+|.+.++|++||+.+ +..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3455678999999999999999999999999999999999999 9999999999999999999999988 7778
Q ss_pred --CCeeeEEEEccc
Q 025468 85 --NGRRANCNLASL 96 (252)
Q Consensus 85 --~G~~l~v~~a~~ 96 (252)
.++.|.|++++.
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 578899999874
No 89
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=135.62 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=73.3
Q ss_pred CcCcEEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 16 TTLTKVFVGGLAWETPREALR----EHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.+.++|||+||++++++++|+ ++|++||+|++|+|++|+.+ ||||||+|.+.++|++||+.+ +.+|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999999854 899999999999999999998 7889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++..
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999754
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-21 Score=136.30 Aligned_cols=79 Identities=30% Similarity=0.459 Sum_probs=72.8
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||++++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999989999999999999999999999998 77788887766554
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=2.8e-20 Score=142.54 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCee
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGD---ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRR 88 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~ 88 (252)
.....+.++|||+||++++|+++|+++|+.||. |++|+|++|+. |++||||||+|++.++|++||+..+..|+|+.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 445667899999999999999999999999999 89999999985 99999999999999999999993388899999
Q ss_pred eEEEEccc
Q 025468 89 ANCNLASL 96 (252)
Q Consensus 89 l~v~~a~~ 96 (252)
|+|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999864
No 92
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=132.79 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=76.4
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
..+...++|||+||++++++++|+++|+.| .|++|+|++| .+|+++|||||+|.+.++|++||+ + +..|+|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 455678999999999999999999999999 9999999999 599999999999999999999999 8 88899999999
Q ss_pred EEcccC
Q 025468 92 NLASLG 97 (252)
Q Consensus 92 ~~a~~~ 97 (252)
++++.+
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999754
No 93
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=133.75 Aligned_cols=88 Identities=27% Similarity=0.477 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC
Q 025468 4 NSSSSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP 82 (252)
Q Consensus 4 ~~s~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~ 82 (252)
+.++...........++|||+||+.++++++|+++|++||.|++|+|.++ ||||||+|.+.++|++||+.+ +.
T Consensus 3 ~g~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 3 SGSSGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp CCCCCCCCCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCccccccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC
Confidence 44455555556677899999999999999999999999999999999764 789999999999999999998 88
Q ss_pred ccC--CeeeEEEEcccC
Q 025468 83 IIN--GRRANCNLASLG 97 (252)
Q Consensus 83 ~l~--G~~l~v~~a~~~ 97 (252)
.|+ |++|+|++++.+
T Consensus 77 ~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 77 PLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp BCSSSSCBCEEEECCCC
T ss_pred EeCCCCcEEEEEECCCC
Confidence 899 999999999764
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=138.95 Aligned_cols=84 Identities=19% Similarity=0.398 Sum_probs=73.3
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecC-CCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDK-LTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~-~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
.......++|||+||++++++++|+++|++|| |++|+|++|+ .+|+++|||||+|.+.++|++|| .+ +..|+|++|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34557789999999999999999999999999 9999999998 68999999999999999999999 77 889999999
Q ss_pred EEEEcccC
Q 025468 90 NCNLASLG 97 (252)
Q Consensus 90 ~v~~a~~~ 97 (252)
+|++++.+
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999754
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.5e-20 Score=131.93 Aligned_cols=75 Identities=37% Similarity=0.717 Sum_probs=70.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
+|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+..+..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999983388999999999875
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.6e-19 Score=139.07 Aligned_cols=84 Identities=26% Similarity=0.370 Sum_probs=78.5
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
......++|||+||+.++++++|+++|++||+|++|+|++|+ +|+++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345667899999999999999999999999999999999999 9999999999999999999999988 78899999999
Q ss_pred EEcccC
Q 025468 92 NLASLG 97 (252)
Q Consensus 92 ~~a~~~ 97 (252)
+++...
T Consensus 109 ~~a~~~ 114 (124)
T 2kt5_A 109 QLVASQ 114 (124)
T ss_dssp EEECCT
T ss_pred EEeCCC
Confidence 999754
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=139.04 Aligned_cols=85 Identities=28% Similarity=0.514 Sum_probs=77.7
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
....+...++|||+||+.++++++|+++|++||+|++|+|++|+ +++||||||+|.+.++|++||+.+ +..++|++|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566778999999999999999999999999999999999986 458999999999999999999998 888999999
Q ss_pred EEEEcccC
Q 025468 90 NCNLASLG 97 (252)
Q Consensus 90 ~v~~a~~~ 97 (252)
+|++++.+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999753
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=130.98 Aligned_cols=79 Identities=30% Similarity=0.572 Sum_probs=72.2
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
.++...++|||+||++++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 345678999999999999999999999999999999996 689999999999999999998 78899999999
Q ss_pred EEcccCCC
Q 025468 92 NLASLGAR 99 (252)
Q Consensus 92 ~~a~~~~~ 99 (252)
++++.+..
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99986544
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=4.6e-20 Score=157.21 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=75.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYG--DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
..++|||+||++++||++|+++|++|| +|++|+|++|+.+|++||||||+|.+.++|++||+.| +.+|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 677999999999999999999999999 9999999999999999999999999999999999998 7899999999999
Q ss_pred ccc
Q 025468 94 ASL 96 (252)
Q Consensus 94 a~~ 96 (252)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 100
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=132.85 Aligned_cols=85 Identities=29% Similarity=0.449 Sum_probs=75.7
Q ss_pred CCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 8 SNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 8 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
+..........++|||+||++++++++|+++|++||.|++|+|.++ ||||||+|.+.++|++||+.+ +..|+|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 5 SSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp SSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444556677899999999999999999999999999999999764 789999999999999999998 888999
Q ss_pred eeeEEEEcccCC
Q 025468 87 RRANCNLASLGA 98 (252)
Q Consensus 87 ~~l~v~~a~~~~ 98 (252)
++|+|++++.+.
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpj_A 79 KQLRVRFACHSA 90 (99)
T ss_dssp BCCEEEESSCCS
T ss_pred ceEEEEEcCCCC
Confidence 999999997543
No 101
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.5e-20 Score=131.84 Aligned_cols=75 Identities=35% Similarity=0.591 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
+|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++||+..+..++|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999998999999999999999999999998788899999999875
No 102
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=137.48 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=74.7
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
.....+.++|||+||++++||++|+++|+.| .|++|+|++|+ +|++||||||+|++.++|++||+..+..|+|+.|+|
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3445566899999999999999999999999 89999999998 599999999999999999999954488899999999
Q ss_pred EEccc
Q 025468 92 NLASL 96 (252)
Q Consensus 92 ~~a~~ 96 (252)
..+..
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 98864
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.6e-20 Score=136.40 Aligned_cols=78 Identities=26% Similarity=0.519 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|++.+ |++||+.+ +..++|++|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999999 88899999999999754
No 104
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=132.47 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.......++|||+||++++++++|+++|++||.|+ ++++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34556689999999999999999999999999997 677665 47999999999999999999998 8889999999
Q ss_pred EEEcccCC
Q 025468 91 CNLASLGA 98 (252)
Q Consensus 91 v~~a~~~~ 98 (252)
|++++.+.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99997643
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-20 Score=141.97 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=75.1
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||++++|+++|+++|+.||.|+++.++.++.+|+++|||||+|.+.++|++||+ + +..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999997777777799999999999999999999999 7 888999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9874
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=136.78 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc---CCccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA---TPIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~---~~~l~G~~l~ 90 (252)
.....++|||+||++++||++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ +.+|+|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999999876 799999999999999999987 3579999999
Q ss_pred EEEcccCCCC
Q 025468 91 CNLASLGARR 100 (252)
Q Consensus 91 v~~a~~~~~~ 100 (252)
|++++.+..+
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999865443
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2.2e-19 Score=135.50 Aligned_cols=83 Identities=29% Similarity=0.467 Sum_probs=71.9
Q ss_pred CCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 10 IGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
.....+...++|||+||++++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.+ +..++|++
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 335567788999999999999999999999999999999996 789999999999999999998 88999999
Q ss_pred eEEEEcccCCCC
Q 025468 89 ANCNLASLGARR 100 (252)
Q Consensus 89 l~v~~a~~~~~~ 100 (252)
|+|++++....+
T Consensus 95 l~V~~a~~~~~r 106 (108)
T 2jvo_A 95 LEVVYSKLPAKR 106 (108)
T ss_dssp CEEESCSCCC--
T ss_pred EEEEEecCCCCC
Confidence 999999865544
No 108
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=9.6e-20 Score=135.43 Aligned_cols=84 Identities=33% Similarity=0.546 Sum_probs=77.6
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCN 92 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~ 92 (252)
..+...++|||+||++++++++|+++|++||.|++|+|++|+ +|++||||||+|++.++|++||+ .+..|+|++|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 345667999999999999999999999999999999999999 99999999999999999999999 7778999999999
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 987543
No 109
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-20 Score=138.29 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||++++|+++|+++|++||.|+++.+..+..+++++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999954433333337889999999999999999999998 888999999999
Q ss_pred EcccCCCC
Q 025468 93 LASLGARR 100 (252)
Q Consensus 93 ~a~~~~~~ 100 (252)
+++....+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99865443
No 110
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=133.66 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=73.7
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
++...++|||+||+.++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4566889999999999999999999999999999999886 789999999999999999998 889999999999
Q ss_pred EcccCCC
Q 025468 93 LASLGAR 99 (252)
Q Consensus 93 ~a~~~~~ 99 (252)
+++....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.2e-19 Score=142.68 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=76.1
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGD---ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
.+..+.++|||+||++++||++|+++|+.||. |++|+|++|+. |++||||||+|++.++|++||+ + +.+|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 44567899999999999999999999999999 89999999995 9999999999999999999999 6 88899999
Q ss_pred eEEEEccc
Q 025468 89 ANCNLASL 96 (252)
Q Consensus 89 l~v~~a~~ 96 (252)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999863
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=132.21 Aligned_cols=76 Identities=29% Similarity=0.507 Sum_probs=71.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
++|||+||++++|+++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.+ +..++|++|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 6899999999999999999998 88999999999999865
Q ss_pred CC
Q 025468 98 AR 99 (252)
Q Consensus 98 ~~ 99 (252)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=134.14 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCCCcCcEEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC
Q 025468 13 FGDTTLTKVFVGGLAWET------PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
..+...++|||+||++++ ++++|+++|++||.|++|+|++ .+|++||||||+|.+.++|++||+.+ +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345557899999999999 7899999999999999999983 48999999999999999999999998 88899
Q ss_pred Ce-eeEEEEcccC
Q 025468 86 GR-RANCNLASLG 97 (252)
Q Consensus 86 G~-~l~v~~a~~~ 97 (252)
|+ +|+|++++..
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999999743
No 114
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=128.37 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCCCCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC
Q 025468 7 SSNIGQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 7 ~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
.++.........++|||+|| ++|+++|+++|++||+|++|+|. ++||||||+|.+.++|++||+.+ +..|+
T Consensus 4 ~s~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 4 GSSGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp SCSSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34444556667899999996 89999999999999999999984 46899999999999999999998 88899
Q ss_pred CeeeEEEEcccCCC
Q 025468 86 GRRANCNLASLGAR 99 (252)
Q Consensus 86 G~~l~v~~a~~~~~ 99 (252)
|++|+|++++.+..
T Consensus 76 g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 76 SVQLKVNIARKQPM 89 (97)
T ss_dssp TEEEEEECCSSCCC
T ss_pred CeEEEEEECCCCCC
Confidence 99999999976543
No 115
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-20 Score=137.07 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||++++|+++|+++|++||.|.+ +++.|+.++++||||||+|.+.++|++||+ + +..|+|++|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999988 777777789999999999999999999999 7 889999999999
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
+++.+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997543
No 116
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.9e-19 Score=139.67 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=74.2
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeE--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDIL--EAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~--~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
.....++|||+||++++||++|+++|+.| .|+ +|+|++|+. |++||||||+|++.++|++||+..+.+|+|+.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 44567899999999999999999999999 677 899999995 99999999999999999999997788899999999
Q ss_pred EEccc
Q 025468 92 NLASL 96 (252)
Q Consensus 92 ~~a~~ 96 (252)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98864
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=6.3e-21 Score=145.31 Aligned_cols=86 Identities=26% Similarity=0.362 Sum_probs=79.7
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILE--------AVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
++...++|||+||+.++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+.+ +..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999999 999999889999999999999999999999998 8889
Q ss_pred CCeeeEEEEcccCCC
Q 025468 85 NGRRANCNLASLGAR 99 (252)
Q Consensus 85 ~G~~l~v~~a~~~~~ 99 (252)
+|++|+|++++.+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999976543
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=1e-18 Score=131.72 Aligned_cols=75 Identities=24% Similarity=0.477 Sum_probs=69.1
Q ss_pred CcCcEEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 16 TTLTKVFVGGLAWE-TPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 16 ~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
...++|||+||+++ +++++|+++|++||.|++|+| ++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 5799999999999999999998 8889999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
++..+
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=131.24 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc--cCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI--INGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~--l~G~~l~ 90 (252)
....+++|||+||+.++||++|+++|++||.|++|+|++ .||||||+|++.++|++||+.+ +.. |.|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445678999999999999999999999999999999975 3789999999999999999998 443 8899999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999754
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=1.9e-19 Score=136.72 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=70.5
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
...++|||+||++++++++|+++|++|| +|+.++|..+ +++|||||+|++.++|++||+.+ +.+|+|++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 9999988643 37999999999999999999999 8889999999999
Q ss_pred cccC
Q 025468 94 ASLG 97 (252)
Q Consensus 94 a~~~ 97 (252)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8743
No 121
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=130.00 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=69.8
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C-CccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGD-ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T-PIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~l~G~~l~ 90 (252)
.+...++|||+||++++|+++|+++|++||. |+.+.+. ++|||||+|.+.++|++||+.+ + .+|+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4456789999999999999999999999999 6666552 4799999999999999999998 7 889999999
Q ss_pred EEEcccCCCC
Q 025468 91 CNLASLGARR 100 (252)
Q Consensus 91 v~~a~~~~~~ 100 (252)
|++++.+..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999865443
No 122
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=126.56 Aligned_cols=80 Identities=26% Similarity=0.465 Sum_probs=71.9
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...+...++|||+||++++++++|+++|++||.|++|+|++ +||||+|++.++|++||+.+ +..|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999963 49999999999999999998 7889999999
Q ss_pred EEEcccCCC
Q 025468 91 CNLASLGAR 99 (252)
Q Consensus 91 v~~a~~~~~ 99 (252)
|++++.+..
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999976543
No 123
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=125.57 Aligned_cols=79 Identities=32% Similarity=0.550 Sum_probs=71.8
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc--CCccCCee
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA--TPIINGRR 88 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~--~~~l~G~~ 88 (252)
...++...++|||+||+.++++++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.+ +..++|++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3456677899999999999999999999999999999999874 789999999999999999976 57799999
Q ss_pred eEEEEcc
Q 025468 89 ANCNLAS 95 (252)
Q Consensus 89 l~v~~a~ 95 (252)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999985
No 124
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=136.66 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=73.3
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 14 GDTTLTKVFVGGLAWETPREALR----EHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
+....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|++||+.+ +..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 44567899999999999999876 6999999999988753 6889999999999999999999999 88999999
Q ss_pred eEEEEcccCC
Q 025468 89 ANCNLASLGA 98 (252)
Q Consensus 89 l~v~~a~~~~ 98 (252)
|+|++++.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998543
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=126.96 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=71.5
Q ss_pred CCCCCCcCcEEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 11 GQFGDTTLTKVFVGGLAWETPREALREHFDKY--GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 11 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~--G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
........++|||+||++++++++|+++|++| |.|++|++. ||||||+|.+.++|++||+.+ +..|+|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34455677899999999999999999999999 999999873 679999999999999999988 8889999
Q ss_pred eeEEEEcccCC
Q 025468 88 RANCNLASLGA 98 (252)
Q Consensus 88 ~l~v~~a~~~~ 98 (252)
+|+|++++.+.
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 126
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=135.86 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=76.5
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCee
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGD---ILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRR 88 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~ 88 (252)
..+..+.++|||+||++++|+++|+++|+.||. |++|+|++|+. |++||||||+|.+.++|++||+..+..|+|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345567899999999999999999999999998 89999999995 99999999999999999999993388899999
Q ss_pred eEEEEccc
Q 025468 89 ANCNLASL 96 (252)
Q Consensus 89 l~v~~a~~ 96 (252)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999874
No 127
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=3.6e-19 Score=128.81 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=68.7
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
....|||+||++.+||++|+++|++||+|+++++.. +||||||+|.++++|++||+.| +.++.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 5899999999999999999999 888999999999985
No 128
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=9.4e-20 Score=143.78 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
...+.++|||+||++++||++|+++|++|| |++|+|++|+ +|++||||||+|++.++|++|| .+ +.+|+|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 446678999999999999999999999999 7799999998 5999999999999999999999 55 888999999999
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987543
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.3e-19 Score=131.63 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.+...++|||+||+.++++++|+++|++||.|++|+|.+ +||||||+|.+.++|++||+.+ +..++|++|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345578999999999999999999999999999999973 5899999999999999999998 889999999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9874
No 130
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=126.99 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=69.5
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||++++|+++|+++|++||.|++| +.|+.+++ ||||+|.+.++|++||+ + +..|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34456899999999999999999999999999987 56665665 99999999999999999 8 889999999999
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
++..+.
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 886543
No 131
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=126.16 Aligned_cols=78 Identities=26% Similarity=0.462 Sum_probs=71.1
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
..+...++|||+||++++|+++|+++|++||.|++|+|++ +||||+|.+.++|++||+.+ +..++|++|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999963 49999999999999999998 88899999999
Q ss_pred EEcccCC
Q 025468 92 NLASLGA 98 (252)
Q Consensus 92 ~~a~~~~ 98 (252)
++++...
T Consensus 76 ~~a~~~~ 82 (90)
T 2dnp_A 76 ELSTKGQ 82 (90)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998653
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=132.18 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=70.4
Q ss_pred CCCcCcEEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc---CCccCCeee
Q 025468 14 GDTTLTKVFVGGLAWE-TPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA---TPIINGRRA 89 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~---~~~l~G~~l 89 (252)
+....++|||+||+++ ++|++|+++|++||+|++|+|++ +||||||+|++.++|++||+.+ +.+|+|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4556889999999998 99999999999999999999975 4799999999999999999977 346999999
Q ss_pred EEEEcccCC
Q 025468 90 NCNLASLGA 98 (252)
Q Consensus 90 ~v~~a~~~~ 98 (252)
+|++++...
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999997543
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=127.64 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=66.3
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe-ee
Q 025468 18 LTKVFVGGLAWET------PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR-RA 89 (252)
Q Consensus 18 ~~~lfVgnLp~~~------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~-~l 89 (252)
.++|||+|||.++ ++++|+++|++||.|++|+|.+ .+|++||||||+|.+.++|++||+.+ +..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 7799999999999999999873 48999999999999999999999998 8889999 88
Q ss_pred EE
Q 025468 90 NC 91 (252)
Q Consensus 90 ~v 91 (252)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 134
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.4e-18 Score=145.68 Aligned_cols=83 Identities=27% Similarity=0.467 Sum_probs=76.1
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+...++|||+||++++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 345689999999999999999999999999999999999999999999999999999999999999 7889999999999
Q ss_pred cccC
Q 025468 94 ASLG 97 (252)
Q Consensus 94 a~~~ 97 (252)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8643
No 135
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.6e-18 Score=142.13 Aligned_cols=86 Identities=34% Similarity=0.599 Sum_probs=79.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANC 91 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v 91 (252)
..+....++|||+||++++|+++|+++|+.||.|++|+|++|+.+|+++|||||+|.+.++|++||+..+..++|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 44667889999999999999999999999999999999999998999999999999999999999998888999999999
Q ss_pred EEcccC
Q 025468 92 NLASLG 97 (252)
Q Consensus 92 ~~a~~~ 97 (252)
.++...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998754
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=137.57 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=74.2
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDI----LEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRAN 90 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I----~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~ 90 (252)
..+.++|||+||++++||++|+++|++||.| ++|+|+.|+ +|++||||||+|++.++|++||+..+..|+|+.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999975 689999996 99999999999999999999999878889999999
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998863
No 137
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=133.77 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=71.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLT---GRSKGYGFVTFKEPEAAKKACEDATPIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~ 90 (252)
+....++|||+||++++++++|+++|++||.|+ ++++.++.+ |++||||||+|++.++|++||+.+ ..++|+.|.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEE
Confidence 445679999999999999999999999999999 888888766 799999999999999999999998 238999888
Q ss_pred EEEcc
Q 025468 91 CNLAS 95 (252)
Q Consensus 91 v~~a~ 95 (252)
|..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 87654
No 138
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.9e-18 Score=141.78 Aligned_cols=87 Identities=29% Similarity=0.529 Sum_probs=76.3
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
....++|||+||+.++|+++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++||+.++..|+|+.|.|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999998888999999999999
Q ss_pred ccCCCCC
Q 025468 95 SLGARRP 101 (252)
Q Consensus 95 ~~~~~~~ 101 (252)
..+....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 8665443
No 139
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=8e-19 Score=129.02 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=73.9
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 14 GDTTLTKVFVGGLAWETPREALR----EHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
++...++|||+||+.++++++|+ ++|++||.|++|+|.+ +|+++|||||+|.+.++|++||+.+ +..++|++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45667999999999999999999 9999999999999874 5778999999999999999999998 88899999
Q ss_pred eEEEEcccCC
Q 025468 89 ANCNLASLGA 98 (252)
Q Consensus 89 l~v~~a~~~~ 98 (252)
|+|++++...
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998653
No 140
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-18 Score=127.94 Aligned_cols=78 Identities=26% Similarity=0.504 Sum_probs=69.6
Q ss_pred CCCcCcEEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 14 GDTTLTKVFVGGLAW-ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
+....++|||+||++ ++++++|+++|++||.|++|+|. ||||||+|.+.++|++||+.+ +..++|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456688999999998 99999999999999999999983 789999999999999999998 88899999999
Q ss_pred EEcccCCC
Q 025468 92 NLASLGAR 99 (252)
Q Consensus 92 ~~a~~~~~ 99 (252)
++++....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99986543
No 141
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=4.9e-18 Score=157.37 Aligned_cols=85 Identities=24% Similarity=0.495 Sum_probs=79.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||+.+||+++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.| +..|+|+.|.|+
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455689999999999999999999999999999999999889999999999999999999999999 889999999999
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
+++...
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998543
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=128.29 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=72.8
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
...+...++|||+||+.++++++|+++|++||.|+.+ ..+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455678999999999999999999999999988766 227889999999999999999999998 7889999999
Q ss_pred EEEcccCC
Q 025468 91 CNLASLGA 98 (252)
Q Consensus 91 v~~a~~~~ 98 (252)
|++++.+.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99997543
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=2.1e-18 Score=141.34 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=77.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
.....++|||+||++++++++|+++|++||.|++|+|+.|+ +++++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456899999999999999999999999999999999999 9999999999999999999999998 889999999999
Q ss_pred EcccC
Q 025468 93 LASLG 97 (252)
Q Consensus 93 ~a~~~ 97 (252)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99743
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=126.19 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=72.7
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEA-VIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
.......++|||+||++++++++|+++|++||.|++| .|+.|+.++. |||+|.+.++|++||+.+ +..|+|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3344567899999999999999999999999999999 5888874433 999999999999999988 889999999
Q ss_pred EEEEcccC
Q 025468 90 NCNLASLG 97 (252)
Q Consensus 90 ~v~~a~~~ 97 (252)
+|++++.+
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999765
No 145
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.5e-18 Score=125.69 Aligned_cols=77 Identities=25% Similarity=0.532 Sum_probs=69.6
Q ss_pred CCCCcCcEEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 13 FGDTTLTKVFVGGLAW-ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
......++|||+||++ ++++++|+++|++||.|++|+| +||||||+|.+.++|++||+.+ +..++|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456689999999998 9999999999999999999998 3789999999999999999998 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999753
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=2.7e-18 Score=136.40 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=74.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.......++|||+||++++|+++|+++|++||.|++|+|++| +||||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999887 5899999999999999999988 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++.+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999754
No 147
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=134.48 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=71.3
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHHH--hc-CCc
Q 025468 19 TKVFVGGL----AWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEA----AKKACE--DA-TPI 83 (252)
Q Consensus 19 ~~lfVgnL----p~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~----A~~Ai~--~~-~~~ 83 (252)
++|||+|| ++.++|++|+++|+.||+|.+|+++.|+.||+++|||||+|.+ .++ |.+||+ .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 899998 66 788
Q ss_pred cCCeeeEEEEcccC
Q 025468 84 INGRRANCNLASLG 97 (252)
Q Consensus 84 l~G~~l~v~~a~~~ 97 (252)
|+|++|+|++.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998743
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.2e-18 Score=133.89 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=78.4
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
......++|||+||+.++++++|+++|++||.|++++|+.|+.+|+++|||||+|.+.++|++||+.+ +..++|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 35566789999999999999999999999999999999999889999999999999999999999998 88999999999
Q ss_pred EEcc
Q 025468 92 NLAS 95 (252)
Q Consensus 92 ~~a~ 95 (252)
++++
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 149
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=126.11 Aligned_cols=79 Identities=28% Similarity=0.510 Sum_probs=67.7
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEc
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLA 94 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a 94 (252)
....++|||+||++++++++|+++|++||.|++|+|+++ +||||||+|++.++|++|+.. ...++|++|+|+++
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNA 75 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEec
Confidence 345799999999999999999999999999999999875 689999999999999865433 44579999999998
Q ss_pred ccCCC
Q 025468 95 SLGAR 99 (252)
Q Consensus 95 ~~~~~ 99 (252)
+.+..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 150
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=7e-18 Score=127.94 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=73.3
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
....++|||+||++++++++|+++|+.||.|++|+|+++ +.++|||||+|.+.++|++||+.+ +..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999875 456999999999999999999988 8899999999999
Q ss_pred cccC
Q 025468 94 ASLG 97 (252)
Q Consensus 94 a~~~ 97 (252)
++..
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9854
No 151
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=129.35 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
+...++|||+||+.++++++|+++|++||.|++|+|+. +||||||+|.+.++|++||+.+ +..++|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999998864 5789999999999999999999 8889999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
++...
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 98643
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.7e-18 Score=130.85 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=64.9
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee----
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR---- 88 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~---- 88 (252)
.....++|||+||++++++++|+++|++||+|++|+|+.| |||||+|++.++|++||+.| +.+|+|++
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3456789999999999999999999999999999999775 89999999999999999998 88899998
Q ss_pred -eEEEEccc
Q 025468 89 -ANCNLASL 96 (252)
Q Consensus 89 -l~v~~a~~ 96 (252)
|+|+.++.
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 66666554
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=7.2e-18 Score=134.35 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=76.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
.++|||+|||.++++++|+++|+.||.|++|+|++++.+|+++|||||+|.+.++|++||+.+ +..++|++|+|++++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999999989999999999999999999999988 8889999999999975
Q ss_pred C
Q 025468 97 G 97 (252)
Q Consensus 97 ~ 97 (252)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=6.5e-18 Score=135.07 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=77.1
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
..++|||+|||.++++++|+++|++||.|++|+|++++.+|+++|||||+|.+.++|++||+.+ +..++|++|+|++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3689999999999999999999999999999999999889999999999999999999999988 888999999999997
Q ss_pred cCC
Q 025468 96 LGA 98 (252)
Q Consensus 96 ~~~ 98 (252)
...
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 155
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=3.4e-18 Score=124.48 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=63.4
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCN 92 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~ 92 (252)
......++|||+||++++||++|+++|++||.|++|+|+++ +||||||+|++.++|+++. .....+.|++|+|+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEE
Confidence 34567799999999999999999999999999999999875 6999999999999998432 22334679999999
Q ss_pred EcccCC
Q 025468 93 LASLGA 98 (252)
Q Consensus 93 ~a~~~~ 98 (252)
+++.+.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 997543
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1e-17 Score=135.07 Aligned_cols=81 Identities=16% Similarity=0.348 Sum_probs=72.2
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC--eeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING--RRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G--~~l~ 90 (252)
...+..+|||+||++++|+++|+++|++||+|++|+|..++ ++|||||+|++.++|++||+.| +.+|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 44567889999999999999999999999999999997643 5899999999999999999999 888865 9999
Q ss_pred EEEcccCC
Q 025468 91 CNLASLGA 98 (252)
Q Consensus 91 v~~a~~~~ 98 (252)
|++++.+.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998653
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=1.9e-17 Score=135.94 Aligned_cols=84 Identities=24% Similarity=0.418 Sum_probs=79.1
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEE
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNL 93 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~ 93 (252)
....++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999999999889999999999999999999999998 8899999999999
Q ss_pred cccCC
Q 025468 94 ASLGA 98 (252)
Q Consensus 94 a~~~~ 98 (252)
++.+.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98654
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.5e-17 Score=138.47 Aligned_cols=82 Identities=20% Similarity=0.460 Sum_probs=77.7
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+ +..|+|++|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45589999999999999999999999999999999999889999999999999999999999998 88999999999999
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
+..
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 754
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=5.2e-18 Score=122.87 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=69.0
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||++++++++|+++|++| +|++|+|. ++||||||+|.+.++|++||+.+ +.+++|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999984 47899999999999999999998 88899999999999
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=137.68 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=72.7
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEE--Eeec---CCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAV--IISD---KLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~--i~~d---~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
....++|||+||++++|+++|+++|+.||.|++|. ++.| ..+|+++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999987741 1111 227889999999999999999999998 88899999
Q ss_pred eEEEEcccCCCC
Q 025468 89 ANCNLASLGARR 100 (252)
Q Consensus 89 l~v~~a~~~~~~ 100 (252)
|+|++++....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999865443
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=1.9e-17 Score=133.01 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=76.0
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.+ +..++|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999889999999999999999999999998 88999999999987
Q ss_pred c
Q 025468 95 S 95 (252)
Q Consensus 95 ~ 95 (252)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=1.8e-17 Score=137.54 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=75.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
..++|||+||++++|+++|+++|++||.|++|+|.+++ ++++||||||+|++.++|++||+.++..++|+.|.|++++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999998 69999999999999999999999888899999999999876
Q ss_pred CCC
Q 025468 97 GAR 99 (252)
Q Consensus 97 ~~~ 99 (252)
...
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 443
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.5e-17 Score=139.48 Aligned_cols=79 Identities=30% Similarity=0.527 Sum_probs=73.6
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
..++|||+||++++|+++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.| +.+|+|++|+|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 457999999999999999999998 899999999999997
Q ss_pred cC
Q 025468 96 LG 97 (252)
Q Consensus 96 ~~ 97 (252)
.+
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.5e-17 Score=131.03 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcccC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASLG 97 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~~ 97 (252)
++|||+|||.++|+++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..+.|+.|+|+++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999998 6889999999999999999999888 88899999999998754
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=126.05 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=68.3
Q ss_pred CCCcCcEEEE--cCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc-----C
Q 025468 14 GDTTLTKVFV--GGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII-----N 85 (252)
Q Consensus 14 ~~~~~~~lfV--gnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l-----~ 85 (252)
.+...++||| |||+++++|++|+++|++||+|++|.|+. .||||||+|++.++|++||+.| +.+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4455789999 77999999999999999999999998864 3789999999999999999999 7777 6
Q ss_pred CeeeEEEEccc
Q 025468 86 GRRANCNLASL 96 (252)
Q Consensus 86 G~~l~v~~a~~ 96 (252)
|+.|.|.+++.
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999999863
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.5e-17 Score=132.92 Aligned_cols=79 Identities=35% Similarity=0.744 Sum_probs=74.0
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
+.++|||+|||.++|+++|+++|+.||.|++|+|++|+.+|+++|||||+|.+.++|++||+. +..++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 578999999999999999999999999999999999988999999999999999999999996 5679999999988753
No 167
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=3e-17 Score=126.35 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=69.7
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
......++|||+|| ++|+++|+++|++||.|++|+|. ++||||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999996 69999999999999999999985 46899999999999999999998 88999999999
Q ss_pred EEcccCC
Q 025468 92 NLASLGA 98 (252)
Q Consensus 92 ~~a~~~~ 98 (252)
++++...
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998653
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=2.8e-17 Score=136.75 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=73.7
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
...++|||+||+.++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45689999999999999999999999999999999999989999999999999999999999988 88899999999887
Q ss_pred ccC
Q 025468 95 SLG 97 (252)
Q Consensus 95 ~~~ 97 (252)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.3e-17 Score=133.36 Aligned_cols=81 Identities=30% Similarity=0.597 Sum_probs=75.4
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
..++|||+||+.++++++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+..+..++|++|+|++++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46799999999999999999999999999999999998899999999999999999999998337889999999999975
Q ss_pred C
Q 025468 97 G 97 (252)
Q Consensus 97 ~ 97 (252)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=7.6e-17 Score=128.80 Aligned_cols=81 Identities=32% Similarity=0.515 Sum_probs=75.8
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCC--eeeE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIING--RRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G--~~l~ 90 (252)
.....++|||+||+.++++++|+++|++||.|++++|++++.+++++|||||+|.+.++|++||+.+ +..++| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999999 888988 9999
Q ss_pred EEEc
Q 025468 91 CNLA 94 (252)
Q Consensus 91 v~~a 94 (252)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1e-16 Score=124.67 Aligned_cols=80 Identities=16% Similarity=0.392 Sum_probs=71.0
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHhc-CCccCC--eee
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGY-GFVTFKEPEAAKKACEDA-TPIING--RRA 89 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~-aFV~F~~~e~A~~Ai~~~-~~~l~G--~~l 89 (252)
......+|||+||++.+|+++|+++|++||+|++|+|..+ .||| |||+|.+.++|++||+.| +..|.| ++|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3356678999999999999999999999999999998764 3688 999999999999999999 888988 899
Q ss_pred EEEEcccCC
Q 025468 90 NCNLASLGA 98 (252)
Q Consensus 90 ~v~~a~~~~ 98 (252)
+|++++...
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999998653
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=6.5e-17 Score=135.33 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=71.4
Q ss_pred cCcEEEEcCCC-CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 17 TLTKVFVGGLA-WETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 17 ~~~~lfVgnLp-~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
..++|||+||+ +++|+++|+++|++||.|++|+|++++ ||||||+|.+.++|++||+.| +.+|.|++|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998763 899999999999999999999 89999999999999
Q ss_pred ccCC
Q 025468 95 SLGA 98 (252)
Q Consensus 95 ~~~~ 98 (252)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=7.8e-17 Score=129.44 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=73.7
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC---Ceee
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN---GRRA 89 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~---G~~l 89 (252)
.....++|||+||+.++|+++|+++|++||.|++|+|++++ +|+++|||||+|.+.++|++||+.+ +..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34567899999999999999999999999999999999997 7999999999999999999999999 66655 4999
Q ss_pred EEEEcc
Q 025468 90 NCNLAS 95 (252)
Q Consensus 90 ~v~~a~ 95 (252)
+|++|+
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999984
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=5.8e-17 Score=116.51 Aligned_cols=72 Identities=21% Similarity=0.425 Sum_probs=66.0
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CC
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKY----G-------DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TP 82 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~ 82 (252)
+...++|||+||++++++++|+++|++| | .|+++++.++ ||||||+|.+.++|++|| .+ +.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567999999999999999999999999 8 9999998764 799999999999999999 77 88
Q ss_pred ccCCeeeEEEE
Q 025468 83 IINGRRANCNL 93 (252)
Q Consensus 83 ~l~G~~l~v~~ 93 (252)
.++|++|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 89999999874
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2e-16 Score=122.27 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=67.4
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHhc-CCccCC--eeeEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGY-GFVTFKEPEAAKKACEDA-TPIING--RRANC 91 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~-aFV~F~~~e~A~~Ai~~~-~~~l~G--~~l~v 91 (252)
.....|||+||++.+|+++|+++|++||+|++|+|+. + +|| |||+|++.++|++||+.| +.+|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3445688999999999999999999999999999965 2 286 999999999999999999 888987 58999
Q ss_pred EEcccCC
Q 025468 92 NLASLGA 98 (252)
Q Consensus 92 ~~a~~~~ 98 (252)
++++...
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9997553
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.4e-16 Score=126.91 Aligned_cols=81 Identities=26% Similarity=0.477 Sum_probs=74.3
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee--eE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR--AN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~--l~ 90 (252)
.....++|||+||+.++++++|+++|++||.|++++|+.++.+|+++|||||+|.+.++|++||+.+ +..++|+. |+
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 3456789999999999999999999999999999999999889999999999999999999999998 88899975 77
Q ss_pred EEEc
Q 025468 91 CNLA 94 (252)
Q Consensus 91 v~~a 94 (252)
|++|
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7765
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.2e-16 Score=128.32 Aligned_cols=81 Identities=28% Similarity=0.382 Sum_probs=72.1
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHhc-CCccC---CeeeE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTG--RSKGYGFVTFKEPEAAKKACEDA-TPIIN---GRRAN 90 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg--~skG~aFV~F~~~e~A~~Ai~~~-~~~l~---G~~l~ 90 (252)
+.++|||+|||+++|+++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.+ +..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999776 89999999999999999999988 55554 56778
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
+..++..
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8777644
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=114.81 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 19 TKVFVGGLAWETPREA----LREHFDKY-GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~----L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
+.|||+||++++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++||+.| +..+.||.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599988 33 99999999999999999999 899999999999
Q ss_pred EcccCCC
Q 025468 93 LASLGAR 99 (252)
Q Consensus 93 ~a~~~~~ 99 (252)
+|+.+..
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9986543
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.2e-16 Score=137.10 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=75.6
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 13 FGDTTLTKVFVGGLAWETPREALR----EHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
.++...++|||+||++++|+++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.+ +..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456778999999999999999977 8999999999999876 6789999999999999999999998 8889999
Q ss_pred eeEEEEcccCC
Q 025468 88 RANCNLASLGA 98 (252)
Q Consensus 88 ~l~v~~a~~~~ 98 (252)
.|+|++++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997543
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=3.8e-16 Score=117.26 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCcCcEEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 15 DTTLTKVFVGGLAW-----ETPREALREHFDKYGDILEAVIISDKLT-GRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 15 ~~~~~~lfVgnLp~-----~~tee~L~~~F~~~G~I~~v~i~~d~~t-g~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
....+.|+|.||-. +-++++|+++|++||.|++|+|++|+.+ ++++|||||+|.+.++|++||+.| +..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999963 2378999999999999999999998754 689999999999999999999999 8899999
Q ss_pred eeEEEEccc
Q 025468 88 RANCNLASL 96 (252)
Q Consensus 88 ~l~v~~a~~ 96 (252)
.|.|+++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999974
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=1.9e-16 Score=135.42 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=70.2
Q ss_pred CCCcCcEEEEcCCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc
Q 025468 14 GDTTLTKVFVGGLAWET---------PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI 83 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~---------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~ 83 (252)
.+...++||||||+.++ +|++|+++|++||+|++|+|+. +||||||+|.++++|++||+.| +..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 46678999999999998 7999999999999999999986 4799999999999999999999 788
Q ss_pred c------------CCeeeEEEEcccC
Q 025468 84 I------------NGRRANCNLASLG 97 (252)
Q Consensus 84 l------------~G~~l~v~~a~~~ 97 (252)
| +|+.|.|+||+..
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 8 8999999999854
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-15 Score=113.64 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=71.3
Q ss_pred CCCCCCCcCcEEEEcCCCCCCC-----------HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 025468 10 IGQFGDTTLTKVFVGGLAWETP-----------REALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78 (252)
Q Consensus 10 ~~~~~~~~~~~lfVgnLp~~~t-----------ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~ 78 (252)
.........++|+|.||-...+ +++|+++|++||.|++|.| .|+ .++|||||+|.+.++|++||+
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 3344566789999999944432 5899999999999999965 554 379999999999999999999
Q ss_pred hc-CCccCCeeeEEEEcccCC
Q 025468 79 DA-TPIINGRRANCNLASLGA 98 (252)
Q Consensus 79 ~~-~~~l~G~~l~v~~a~~~~ 98 (252)
.+ +..++|++|+|++++...
T Consensus 83 ~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp HSTTCEETTEECEEEECCSCC
T ss_pred HcCCCEECCcEEEEEEeCCCC
Confidence 99 888999999999997543
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=7.4e-16 Score=124.23 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=71.9
Q ss_pred CCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 13 FGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
......++|||+||+.++++++|+++|++||+|+.+ ..+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345577899999999999999999999999988766 338899999999999999999999998 88899999999
Q ss_pred EEcccC
Q 025468 92 NLASLG 97 (252)
Q Consensus 92 ~~a~~~ 97 (252)
++++.+
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999743
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=7.9e-16 Score=130.29 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=73.6
Q ss_pred CCCCcCcEEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 13 FGDTTLTKVFVGGLAW-ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 13 ~~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
......++|||+||++ ++++++|+++|++||.|++|+|++|+ +|||||+|.+.++|++||+.+ +..++|+.|+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3446679999999999 99999999999999999999999885 789999999999999999988 8899999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++..
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999754
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=8.8e-16 Score=133.44 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred CCCcCcEEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEE
Q 025468 14 GDTTLTKVFVGGLAWET-PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANC 91 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~-tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v 91 (252)
.....++|||+||+.++ |+++|+++|+.||.|++|+|++|+ +|+++|||||+|.+.++|.+||+.+ +..++|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999998 8999999999999999999999999 89999999999
Q ss_pred EEcccCCC
Q 025468 92 NLASLGAR 99 (252)
Q Consensus 92 ~~a~~~~~ 99 (252)
++++.+..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99986543
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.8e-15 Score=131.36 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC-CeeeEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN-GRRANC 91 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~-G~~l~v 91 (252)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.+ +..|+ |++|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999998765 689999999999999999999 88898 999999
Q ss_pred EEcc
Q 025468 92 NLAS 95 (252)
Q Consensus 92 ~~a~ 95 (252)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=1.8e-15 Score=131.40 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=77.3
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLAS 95 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~ 95 (252)
..++|||+||+.++|+++|+++|+.||.|++++|+.|+.+|+++|||||+|.+.++|++||+.+ +..++|+.|.|++++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4579999999999999999999999999999999999989999999999999999999999888 889999999999997
Q ss_pred cCC
Q 025468 96 LGA 98 (252)
Q Consensus 96 ~~~ 98 (252)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 543
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=1.2e-15 Score=133.16 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCCcCcEEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 14 GDTTLTKVFVGGLAWE-TPREALREHFDKYGDILEAVIISDKL-TGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~-tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.....++|||+||+.+ +++++|+++|+.||.|++|+|++|.. ||+++|||||+|.+.++|.+|| .+ +..|+|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999885 5999999999999999999999 88 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++.+
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999753
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=3.3e-16 Score=126.33 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=73.4
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
..+....++|||+||+.++|+++|+++|+.||.|.. .++++..++++||||||+|.+.++|++||+ + +..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 345677899999999999999999999999998776 344555588999999999999999999996 6 8889999999
Q ss_pred EEEcccC
Q 025468 91 CNLASLG 97 (252)
Q Consensus 91 v~~a~~~ 97 (252)
|++++..
T Consensus 85 v~~~~~~ 91 (175)
T 1fje_B 85 LEKPKGR 91 (175)
T ss_dssp EECCCCS
T ss_pred EecCCCc
Confidence 9999754
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=125.07 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=71.3
Q ss_pred cCcEEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 17 TLTKVFVGGLAW-ETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 17 ~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
..++|||+||+. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.+ +..++|+.|+|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998875 789999999999999999988 88899999999999
Q ss_pred ccCC
Q 025468 95 SLGA 98 (252)
Q Consensus 95 ~~~~ 98 (252)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7543
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3e-14 Score=105.92 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=63.6
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeE
Q 025468 18 LTKVFVGGLA-------WETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRAN 90 (252)
Q Consensus 18 ~~~lfVgnLp-------~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~ 90 (252)
.++|-|.-.. .+++|++|+++|++||+|++|+|+ +++||||||+|++.++|++||+.+ ..+.|+.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEE
Confidence 5677776543 458999999999999999999997 357999999999999999999985 347899999
Q ss_pred EEEcccCC
Q 025468 91 CNLASLGA 98 (252)
Q Consensus 91 v~~a~~~~ 98 (252)
|++++...
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987553
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=5.4e-15 Score=127.56 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=73.3
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCc-cC---CeeeEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPI-IN---GRRANC 91 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~-l~---G~~l~v 91 (252)
..++|||+||+.++|+++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|.+||+.+ +.. +. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35799999999999999999999999999999999996 9999999999999999999999998 433 33 999999
Q ss_pred EEcccCC
Q 025468 92 NLASLGA 98 (252)
Q Consensus 92 ~~a~~~~ 98 (252)
++++...
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9997543
No 193
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=8.3e-16 Score=115.15 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=63.4
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 23 VGGLAWETPREALREHF------------DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 23 VgnLp~~~tee~L~~~F------------~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
+.+|++++++++|++.| ++||.|++|+|++++ ++++||||||+|.+.++|++|++.+ +..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 999999999999987 5899999999999999999999999 888999999
Q ss_pred EEEEc
Q 025468 90 NCNLA 94 (252)
Q Consensus 90 ~v~~a 94 (252)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=2.7e-15 Score=125.50 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=67.3
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCe--EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe----ee
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDI--LEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR----RA 89 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I--~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~----~l 89 (252)
..++|||+||++++||++|+++|++||.| ++++|+.++ ++++|||||+|++.++|.+||+.| +.+|+|+ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899998885 556799999999999999999999 7888876 46
Q ss_pred EEEEc
Q 025468 90 NCNLA 94 (252)
Q Consensus 90 ~v~~a 94 (252)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66665
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=9.8e-15 Score=125.95 Aligned_cols=79 Identities=25% Similarity=0.458 Sum_probs=71.6
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeE
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRAN 90 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~ 90 (252)
.......++|||+||+.++|+++|+++|+.||.|++|+|.++ ||||||+|.+.++|++||+.+ +..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 444567789999999999999999999999999999999653 799999999999999999988 8889999999
Q ss_pred EEEccc
Q 025468 91 CNLASL 96 (252)
Q Consensus 91 v~~a~~ 96 (252)
|+++..
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 999863
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=8.4e-15 Score=109.85 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=70.5
Q ss_pred CCcCcEEEEcCC--CCCCC--------HHHHHHHhccCCCeEEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHhc-C
Q 025468 15 DTTLTKVFVGGL--AWETP--------REALREHFDKYGDILEAVIISDKLT--GRSKGYGFVTFKEPEAAKKACEDA-T 81 (252)
Q Consensus 15 ~~~~~~lfVgnL--p~~~t--------ee~L~~~F~~~G~I~~v~i~~d~~t--g~skG~aFV~F~~~e~A~~Ai~~~-~ 81 (252)
...++.|.|.|+ +.++. +++|++.|++||.|++|+|++++.+ ++++||+||+|++.++|++||+.| +
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 346788999998 33343 3799999999999999999998754 368999999999999999999999 8
Q ss_pred CccCCeeeEEEEccc
Q 025468 82 PIINGRRANCNLASL 96 (252)
Q Consensus 82 ~~l~G~~l~v~~a~~ 96 (252)
..++||.|+|++...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 899999999999864
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=6.2e-15 Score=128.55 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=69.7
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLA 94 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a 94 (252)
..++|||+||+.++++++|+++|+.|| .|++|+|++++ .|+++|||||+|.+.++|++||+.+ +..++|+.|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999998 5889999999999999999999988 88999999999999
Q ss_pred ccCCC
Q 025468 95 SLGAR 99 (252)
Q Consensus 95 ~~~~~ 99 (252)
.....
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 75543
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.3e-14 Score=122.75 Aligned_cols=75 Identities=11% Similarity=0.147 Sum_probs=69.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC-CeeeEEEE
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN-GRRANCNL 93 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~-G~~l~v~~ 93 (252)
..++|||+||+.++++++|+++|++|| +|++|+|+.+ ++|||||+|++.++|++||+.+ +..++ |++|+|++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 368999999999999999999999999 9999999664 3789999999999999999998 88899 99999999
Q ss_pred ccc
Q 025468 94 ASL 96 (252)
Q Consensus 94 a~~ 96 (252)
++.
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 975
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=119.04 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=70.0
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC-CeeeEEE
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKYG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN-GRRANCN 92 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~-G~~l~v~ 92 (252)
...++|||+||+.++++++|+++|++|| .|++|+|+.+. +|||||+|.+.++|++||+.+ +..++ |++|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 99999997753 799999999999999999999 88899 9999999
Q ss_pred Eccc
Q 025468 93 LASL 96 (252)
Q Consensus 93 ~a~~ 96 (252)
+++.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9874
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3e-14 Score=114.17 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=65.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKY----G-------DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
+.++|||+|||.++|+++|+++|++| | .|.++++.+ +||||||+|.+.++|++|| .+ +..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 677776643 4899999999999999999 67 8899
Q ss_pred CCeeeEEEEcccC
Q 025468 85 NGRRANCNLASLG 97 (252)
Q Consensus 85 ~G~~l~v~~a~~~ 97 (252)
+|+.|+|++++..
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=2.7e-14 Score=117.03 Aligned_cols=74 Identities=19% Similarity=0.393 Sum_probs=64.3
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKY----G-------DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII 84 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l 84 (252)
..++|||+||++++|+++|+++|++| | .|.++++ ++++|||||+|.+.++|++|| .+ +..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5555554 456899999999999999999 67 8889
Q ss_pred CCeeeEEEEcccC
Q 025468 85 NGRRANCNLASLG 97 (252)
Q Consensus 85 ~G~~l~v~~a~~~ 97 (252)
+|+.|+|++++..
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988754
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=4.7e-14 Score=108.00 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred cCcEEEEcCCCC--CC---CHHHHHHHhccCCCeEEEEEeecCC----CCCcccEEEEEEcCHHHHHHHHHhc-CCccCC
Q 025468 17 TLTKVFVGGLAW--ET---PREALREHFDKYGDILEAVIISDKL----TGRSKGYGFVTFKEPEAAKKACEDA-TPIING 86 (252)
Q Consensus 17 ~~~~lfVgnLp~--~~---tee~L~~~F~~~G~I~~v~i~~d~~----tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G 86 (252)
.++.|+|.|+-. ++ -++||++.|++||.|++|+|++++. +++++||+||+|++.++|++||+.| +..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478899999832 22 3689999999999999999999864 4578899999999999999999999 889999
Q ss_pred eeeEEEEccc
Q 025468 87 RRANCNLASL 96 (252)
Q Consensus 87 ~~l~v~~a~~ 96 (252)
|.|+|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=1.5e-13 Score=123.18 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=64.5
Q ss_pred CCCCcCcEEEEcC--CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCcc---CC
Q 025468 13 FGDTTLTKVFVGG--LAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPII---NG 86 (252)
Q Consensus 13 ~~~~~~~~lfVgn--Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l---~G 86 (252)
..+...++||||| |+.++||++|+++|++||+|++|++.. +||||||+|++.++|++||+.| +.++ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456778999999 588999999999999999999987743 4799999999999999999999 6665 34
Q ss_pred e--eeEEEEcc
Q 025468 87 R--RANCNLAS 95 (252)
Q Consensus 87 ~--~l~v~~a~ 95 (252)
+ .|.|.+++
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 46777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=1.6e-12 Score=98.82 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=63.4
Q ss_pred cCcEEEEcCCCCCC----------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccC
Q 025468 17 TLTKVFVGGLAWET----------PREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIIN 85 (252)
Q Consensus 17 ~~~~lfVgnLp~~~----------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~ 85 (252)
.++.|.+.|+=..- -++||++.|++||.|++|+|.++. .+||+||+|++.++|++||+.| |..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677777763221 125889999999999999997664 5899999999999999999999 88999
Q ss_pred CeeeEEEEccc
Q 025468 86 GRRANCNLASL 96 (252)
Q Consensus 86 G~~l~v~~a~~ 96 (252)
|+.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999863
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.2e-11 Score=93.20 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCCcCcEEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHhc---CCccCC
Q 025468 12 QFGDTTLTKVFVGGLAWE-TPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE-PEAAKKACEDA---TPIING 86 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~-~e~A~~Ai~~~---~~~l~G 86 (252)
+..-...+.|||+||+++ +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|++||+.+ +.+|+|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 344567789999999999 99999999999999999999988863 59999999 89999999998 466999
Q ss_pred eeeEEEEcc
Q 025468 87 RRANCNLAS 95 (252)
Q Consensus 87 ~~l~v~~a~ 95 (252)
..+.+++..
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 989988875
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=9.4e-11 Score=84.74 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=61.6
Q ss_pred cCcEEEEcCCC----CCC-CH---HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCe
Q 025468 17 TLTKVFVGGLA----WET-PR---EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGR 87 (252)
Q Consensus 17 ~~~~lfVgnLp----~~~-te---e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~ 87 (252)
..-+|+|.-++ .++ ++ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+ | +..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 35677777665 223 32 5789999999999999999885 8999999999999999 6 8999999
Q ss_pred eeEEEEcccCCC
Q 025468 88 RANCNLASLGAR 99 (252)
Q Consensus 88 ~l~v~~a~~~~~ 99 (252)
+|+|++++....
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999986543
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=4.7e-10 Score=94.09 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCHHHHHHHhccCCCeEEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEEEccc
Q 025468 30 TPREALREHFDKYGDILEAVIISDK----LTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCNLASL 96 (252)
Q Consensus 30 ~tee~L~~~F~~~G~I~~v~i~~d~----~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~~a~~ 96 (252)
-.+++|++.|++||+|++++|.++. .+++++|++||+|.+.++|++||+.| +..++||.|.|++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999998654 34589999999999999999999999 8899999999999864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2.7e-10 Score=82.76 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=62.6
Q ss_pred CCCCCcCcEEEEcCCCCC------CCH---HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-C
Q 025468 12 QFGDTTLTKVFVGGLAWE------TPR---EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-T 81 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~------~te---e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~ 81 (252)
..-....-+|+|.-++.+ .++ .+|.+.|+.||+|..++|+.|+ +||+|.+.++|.+||+ + +
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 334455678999887632 332 5688999999999999999985 9999999999999999 6 9
Q ss_pred CccCCeeeEEEEcc
Q 025468 82 PIINGRRANCNLAS 95 (252)
Q Consensus 82 ~~l~G~~l~v~~a~ 95 (252)
.+++||.|+|++..
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=4.2e-07 Score=67.44 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=65.7
Q ss_pred CcCcEEEEcCCCCCCCHHHHHHHhccC-----CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 16 TTLTKVFVGGLAWETPREALREHFDKY-----GDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~tee~L~~~F~~~-----G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
+..++|=+-|||+.++++.|+.+++.+ |.|++|.+..|. +-|+|+|.|...|-||.-.+ |.++.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346777778999999999999999999 999999998885 46999999999999999888 899999999
Q ss_pred EEEEcc
Q 025468 90 NCNLAS 95 (252)
Q Consensus 90 ~v~~a~ 95 (252)
+|.-.+
T Consensus 93 r~gTv~ 98 (117)
T 2l9w_A 93 RSGTIN 98 (117)
T ss_dssp EEECHH
T ss_pred EecCHH
Confidence 997543
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.5e-06 Score=61.32 Aligned_cols=76 Identities=26% Similarity=0.316 Sum_probs=64.1
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhcc-----CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCee
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDK-----YGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRR 88 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~-----~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~ 88 (252)
++.-.++|.|.|||.++++|.|+-+|+. -|+|++++... +-|+|+|.+.+.|++.|+...+.|++.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 3445689999999999999999999976 25888887744 3689999999999999998889999999
Q ss_pred eEEEEcccC
Q 025468 89 ANCNLASLG 97 (252)
Q Consensus 89 l~v~~a~~~ 97 (252)
|.|.-....
T Consensus 76 LsV~P~~~~ 84 (104)
T 2dhx_A 76 LSLRPAPPR 84 (104)
T ss_dssp CEEEECCCC
T ss_pred EEEEcCCCC
Confidence 999876544
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.67 E-value=0.00013 Score=52.87 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=48.7
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.-...+.++| ++|.++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3345566677 999999999999999999955 57777775 6999999999999999864
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00013 Score=53.75 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=61.6
Q ss_pred CcCcEEEEcCCCCCC-C----HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeee
Q 025468 16 TTLTKVFVGGLAWET-P----REALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRA 89 (252)
Q Consensus 16 ~~~~~lfVgnLp~~~-t----ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l 89 (252)
.-.++|+|.||+.++ + ++.++++|..|+++.....++.- .=..|.|.+.++|.+|-..+ +..++|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998865 2 25779999999998887776642 24689999999999999999 888999999
Q ss_pred EEEEcc
Q 025468 90 NCNLAS 95 (252)
Q Consensus 90 ~v~~a~ 95 (252)
+|=++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999987
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.0006 Score=51.39 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCC-eeeEEE
Q 025468 14 GDTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIING-RRANCN 92 (252)
Q Consensus 14 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G-~~l~v~ 92 (252)
+....+-|.|-+++.+. .+.+.+.|++||+|++..... ...+-.|.|+++.+|++||.+.+..|+| -.|-|+
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 44567788888999885 566677899999999887621 2459999999999999999999888875 667887
Q ss_pred Ecc
Q 025468 93 LAS 95 (252)
Q Consensus 93 ~a~ 95 (252)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 754
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00025 Score=51.60 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+.++| ++|.++...||.++|+.||. ..|+++.|. -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 99999999999999999994 468888875 6999999999999999965
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.37 E-value=0.0019 Score=46.46 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=53.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHhc-CCc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGR--SKGYGFVTFKEPEAAKKACEDA-TPI 83 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~--skG~aFV~F~~~e~A~~Ai~~~-~~~ 83 (252)
+||-|++||..+|||++.+.++...++........+.+.+ .-.-|+|.|++.|++..-.+.. ++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 6899999999999999999999998888777776654433 2356999999999999998887 554
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.85 E-value=0.0012 Score=50.43 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=54.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeecC--------CCC-----CcccEEEEEEcCHHHHHHHHHhcCCc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILE-AVIISDK--------LTG-----RSKGYGFVTFKEPEAAKKACEDATPI 83 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~--------~tg-----~skG~aFV~F~~~e~A~~Ai~~~~~~ 83 (252)
...|.|-+.|.+.+ ..+.+.|++||.|.+ ..+.++. ... ....+-.|+|+++.+|++||.+.+..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 34566668887754 455567999999876 2221100 000 12467899999999999999999999
Q ss_pred cCCeeeEEEEcc
Q 025468 84 INGRRANCNLAS 95 (252)
Q Consensus 84 l~G~~l~v~~a~ 95 (252)
++|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988998876
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.50 E-value=0.0012 Score=61.11 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=43.5
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..++|||. .+.++++.+|.++|++||.|.++..-+++ .-|+.|+|++.+++.+++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 35899997 79999999999999999999998775543 359999999999999887654
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.37 E-value=0.0033 Score=48.96 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=27.8
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 47 EAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 47 ~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.++|+++. .+++|||||+|.+.++|++||+.+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhh
Confidence 46777775 368999999999999999999887
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.94 E-value=0.017 Score=41.81 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=48.0
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHhc-CCc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGR--SKGYGFVTFKEPEAAKKACEDA-TPI 83 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~--skG~aFV~F~~~e~A~~Ai~~~-~~~ 83 (252)
.+-+|-|+.||..+||+++.+.++..=++.....+..+.+-+ .-.-|+|.|++.|+...-.+.. +..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 456899999999999999998887665554433333332211 1246899999999999988886 443
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.61 E-value=0.042 Score=42.25 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=34.1
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHhc--CCccCCeeeEEEEccc
Q 025468 56 TGRSKGYGFVTFKEPEAAKKACEDA--TPIINGRRANCNLASL 96 (252)
Q Consensus 56 tg~skG~aFV~F~~~e~A~~Ai~~~--~~~l~G~~l~v~~a~~ 96 (252)
..+.+|+++|+|.+.++|++||+.+ +.+++| .+++.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999888 567999 899987763
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.98 E-value=0.27 Score=45.86 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=46.1
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
....++|+ ++..+...+|.++|+.||.| +|+++.|. .|||.|.+.+.|..++..+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 45667776 88899999999999999964 66666664 7999999999999999886
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.23 E-value=3.5 Score=27.50 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=40.3
Q ss_pred EEEEcC-CCCCCCHHHHHHHhccCC-----CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCeeeEEE
Q 025468 20 KVFVGG-LAWETPREALREHFDKYG-----DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRRANCN 92 (252)
Q Consensus 20 ~lfVgn-Lp~~~tee~L~~~F~~~G-----~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~l~v~ 92 (252)
+|||.. --..++..+|..++..-+ +|-.|+|..+ |.||+.... .++++++.+ +..+.|++++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 456632 123466677777775443 4556666332 799988764 577888888 778999999998
Q ss_pred Ecc
Q 025468 93 LAS 95 (252)
Q Consensus 93 ~a~ 95 (252)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 774
No 223
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=69.08 E-value=11 Score=27.06 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 25 GLAWETPREALREHF-DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 25 nLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
.++.-+.-++|..-. +.||.-.++....+ -..|-..+.|+.++||+.++....-+.|++-+...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 567788888886655 68998888877633 26788999999999999985444445555555443
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=64.49 E-value=17 Score=23.23 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=44.8
Q ss_pred cCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 025468 17 TLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATP 82 (252)
Q Consensus 17 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 82 (252)
...++.|.++.=.--...+++.+++ ..|.++.+-.. .+-+.|+|.+.++..++|+.+|.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 3457888888887778899999988 88888877332 34577888777778888887654
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.90 E-value=44 Score=23.48 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
-...+-|-|-|+|..+-+.++--.....|---.|..+ .|-|.|.|.+.++..-||..+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3457888889999999998887777777765556543 246999999999999999987
No 226
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=58.62 E-value=1.9 Score=33.37 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=17.5
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc
Q 025468 32 REALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK 68 (252)
Q Consensus 32 ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~ 68 (252)
++|+.++|...|.|+.. .+ .||||||+-.
T Consensus 1 ~~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CCcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 35677788877877643 22 4899999976
No 227
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.76 E-value=32 Score=23.85 Aligned_cols=57 Identities=7% Similarity=0.173 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 21 VFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
.|+-.++...++.+|++.+++ |+ +|.+|..+.-+ .|.. =|+|++..-.+|......+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~K--KA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEK--KAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCE--EEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCce--EEEEEcCCCCcHHHHHHhh
Confidence 344467888999999999865 67 67788766644 2322 3899999887777665554
No 228
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=48.66 E-value=48 Score=23.46 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEE
Q 025468 25 GLAWETPREALREHF-DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNL 93 (252)
Q Consensus 25 nLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~ 93 (252)
.++.-+.-++|.... ..||.-.++..+.+. -.|-..+.++.++||+.++...+-+.|++-+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 567788888887766 689998888877553 6788899999999999984333334444433
No 229
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=48.18 E-value=32 Score=24.58 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhc-cCC---CeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHH
Q 025468 28 WETPREALREHFD-KYG---DILEA-VIISDKLTGRSKGYGFVTFKEPEAAKKA 76 (252)
Q Consensus 28 ~~~tee~L~~~F~-~~G---~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~A 76 (252)
..++..+|++.+. .|+ ++.-| .+.+.-..|++.|||.| |+|.+.|++-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4678888888774 445 23333 33333344667778766 7777766554
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=47.69 E-value=30 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.4
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+|.++.+... .+||-||++...++...+|+.+
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTC
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCC
Confidence 3666665432 6899999999999999999886
No 231
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=46.90 E-value=42 Score=23.43 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 025468 25 GLAWETPREALREHF-DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAS 95 (252)
Q Consensus 25 nLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~ 95 (252)
.++.-+.-++|..-. ..||.-.++..+.+. -.|-..+.++.++||+.++...+-+.|++-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhccCccccceEEEEEc
Confidence 456777888887666 679988888776443 567889999999999998544555555665554
No 232
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=46.21 E-value=37 Score=24.34 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHhc-cCC---CeEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHFD-KYG---DILEA-VIISDKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F~-~~G---~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
..++..+|++.+. .|+ ++.-| .+.+.-..|++.|||.| |+|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678888888774 344 23333 33333345667788866 777777654
No 233
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=44.46 E-value=7.6 Score=27.79 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhc-cCCCeEEEEEeecC----CCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHFD-KYGDILEAVIISDK----LTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F~-~~G~I~~v~i~~d~----~tg~skG~aFV~F~~~e~A~~ 75 (252)
..++..+|++.+. .|+.-.++.++..- ..|++.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3578888887764 34432333333322 23556677766 666555443
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=44.41 E-value=18 Score=34.48 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHh--c--cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 25 GLAWETPREALREHF--D--KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 25 nLp~~~tee~L~~~F--~--~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
....+.+--||..+| + .+|.|+++.|..-+ --..+.++++.|.+.++|.+++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 345555556888888 2 57899998775544 2345678899999999999999876
No 235
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=44.21 E-value=38 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhc-cCCC---eEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHFD-KYGD---ILEA-VIISDKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F~-~~G~---I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
..++..+|++.+. .|+. +.-| .|.+.-..|++.|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3577888887774 4553 2223 23333334667788866 788777664
No 236
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.65 E-value=75 Score=21.67 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=37.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHhcCC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK-EPEAAKKACEDATP 82 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~-~~e~A~~Ai~~~~~ 82 (252)
.++.|. +.=.--...|++.+.+.-.|.++.+-.. .+-+.|.+. +.++..++|+.++.
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~Gy 78 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGTGR 78 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTTTS
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHhCC
Confidence 355665 5444444778999998888888887443 234667764 56677777777543
No 237
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=41.04 E-value=36 Score=26.36 Aligned_cols=37 Identities=32% Similarity=0.377 Sum_probs=29.1
Q ss_pred CCHHHHHHHhccCCCeE---EEEEeecCCCCCcccEEEEE
Q 025468 30 TPREALREHFDKYGDIL---EAVIISDKLTGRSKGYGFVT 66 (252)
Q Consensus 30 ~tee~L~~~F~~~G~I~---~v~i~~d~~tg~skG~aFV~ 66 (252)
.|+++|+++-++.|++. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999874 45666674489999888763
No 238
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=41.02 E-value=39 Score=24.25 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEE
Q 025468 25 GLAWETPREALREHF-DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNL 93 (252)
Q Consensus 25 nLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~ 93 (252)
.++.-+.-++|+.-. ..||.-.++..+.+. -.|-..+.++.++||+.++...+-+.|++-+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 567778888887666 678988888776543 5677889999999999984434444444443
No 239
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=40.25 E-value=77 Score=23.85 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHh-ccCCC---eEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHF-DKYGD---ILEA-VIISDKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F-~~~G~---I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
..++.++|++-+ ..|+. ++.| .|...-..|++.|||.| |+|.|.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 468899999888 45663 2223 23333334667778877 777777664
No 240
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=45.48 E-value=6.3 Score=28.58 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc-cEEEEEEcCHHHHHHHHHhcCC
Q 025468 26 LAWETPREALREHFDKYGDILEAVIISDKLTGRSK-GYGFVTFKEPEAAKKACEDATP 82 (252)
Q Consensus 26 Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~sk-G~aFV~F~~~e~A~~Ai~~~~~ 82 (252)
|-...++++|+++..+.+ +..+.+.+....|+.. -.-+=.|.++++|.+|++.|-.
T Consensus 30 L~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 30 LSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 333456677888777776 4456665543233321 1122378999999999999843
No 241
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.38 E-value=46 Score=22.96 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=37.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 025468 21 VFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~ 78 (252)
.|+-.++.+.++.+|++.+++ |+ +|.+|..+.-+ .+. -=|+|++..-++|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~~--KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DGE--KKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSS--EEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CCc--eEEEEEECCCCcHHHHHH
Confidence 345567889999999998865 67 67788766654 222 248999987766554433
No 242
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=37.34 E-value=14 Score=35.26 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 025468 33 EALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLASL 96 (252)
Q Consensus 33 e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G~~l~v~~a~~ 96 (252)
.+|++-...--.+..-+| .+.++|||||.-++.++.--.-..++..++|-++.|++.+.
T Consensus 9 ~~lk~~~~~~~~~~~G~~-----~~~~~GfgF~~~d~~~difi~~~~~~~a~~GD~V~v~i~~~ 67 (644)
T 2id0_A 9 AQLKQQLHSQTPRAEGVV-----KATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVIHSE 67 (644)
T ss_dssp HHHHHHHHHTSCEEEEEE-----ECCSSSCEEEECSSSCEEEECHHHHTTSCTTCEEEEEEECC
T ss_pred HHHHHhHHhhCCeEEEEE-----EEecCCcEEEEECCCCCEEECHHHHhcCCCCCEEEEEEecC
Confidence 345555543334445555 34468999999765332222223456779999999988754
No 243
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=37.30 E-value=21 Score=32.87 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=30.8
Q ss_pred HHHHHh--ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 025468 34 ALREHF--DKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78 (252)
Q Consensus 34 ~L~~~F--~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~ 78 (252)
+|+.+| +.+|.|+++.+...+ .......+++.|.+.+++.++++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p-~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEE-CCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEe-cCCeEEEEEEEeCCHHHHHHHHH
Confidence 466777 468999998876554 23345567899999888766443
No 244
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.91 E-value=42 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKE 69 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~ 69 (252)
+|++|+|..-...|+-|+||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887766678889999999976
No 245
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=36.30 E-value=62 Score=23.17 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=25.6
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDAT 81 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~ 81 (252)
.|.++.. .|. -|||-||+=.+..++.+||+.+.
T Consensus 40 ~I~Si~~-~~~----lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 40 QIKSVVA-PEH----VKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCCEEEE-CTT----CCSEEEEEESSHHHHHHHHTTCG
T ss_pred ceEEEEe-cCC----CceEEEEEeCCHHHHHHHHhccc
Confidence 3555544 332 59999999999999999999883
No 246
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=32.86 E-value=77 Score=18.62 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=37.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHhcCC
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK---EPEAAKKACEDATP 82 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~---~~e~A~~Ai~~~~~ 82 (252)
++.|.++.-.--...+++.++....|.++.+-.. .+-..|.|. +.++..++|+.+|.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~G~ 63 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDAGQ 63 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHHTC
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 4556666655556778899988877888777433 345677775 44566677776553
No 247
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=32.60 E-value=90 Score=19.34 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHhcCCc
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK----EPEAAKKACEDATPI 83 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~----~~e~A~~Ai~~~~~~ 83 (252)
.++.|.++.=.--...+++.+++...|.++.+-.. .+-+.|+|. +.++..++|+.+|..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence 45677777766566788999998888888877443 245788885 567788888876643
No 248
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=32.54 E-value=98 Score=19.77 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHhcCC
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK----EPEAAKKACEDATP 82 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~----~~e~A~~Ai~~~~~ 82 (252)
+....++.|.++.-.--...|++.+.....|.++.+-.. .+-+.|.|. +.++..++|+.++.
T Consensus 7 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~Gy 72 (84)
T 1q8l_A 7 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAMGF 72 (84)
T ss_dssp SCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred CceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 334567888888877777889999998888888877332 346788885 34666777777653
No 249
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=31.49 E-value=87 Score=18.81 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHhcCC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEAAKKACEDATP 82 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~A~~Ai~~~~~ 82 (252)
.++.|.++.-.--...+++.+...-.|.++.+-.. .+-..|.|.. .++..++|+.+|.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G~ 68 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQGY 68 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHTTC
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 45778787655555678888988877888777433 3457788763 4556677777554
No 250
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=31.27 E-value=57 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKE 69 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~ 69 (252)
+|++|+|..-...|+-|+||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887766568889999999976
No 251
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.53 E-value=70 Score=24.32 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=37.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 025468 21 VFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~ 79 (252)
.|+-.++...+..+|++.++. |+ +|.+|..+.-+ .|.. =|+|.+....+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NGTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TSCE--EEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCce--EEEEEeCCCCcHHHHHHh
Confidence 444457888899999888865 56 67777766554 2322 389999877666655444
No 252
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.09 E-value=62 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.8
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 025468 44 DILEAVIISDKLTGRSKGYGFVTFKE 69 (252)
Q Consensus 44 ~I~~v~i~~d~~tg~skG~aFV~F~~ 69 (252)
+|++|+|..-...|+-|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887666578889999999976
No 253
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=30.06 E-value=65 Score=24.72 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=37.7
Q ss_pred EEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 22 FVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 22 fVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
|+--++...+..+|++.++. |+ +|.+|..+.-+ .|.. =|+|.+....+|......+
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g~K--KAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TGNK--KAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSCE--EEEEEECSSSCHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCcE--EEEEEcCCCCcHHHHHHhh
Confidence 34456788899999888865 56 67777766554 2322 3899998776666554443
No 254
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=29.61 E-value=1.6e+02 Score=21.35 Aligned_cols=25 Identities=0% Similarity=-0.088 Sum_probs=18.8
Q ss_pred ccEEEEEEcCHHHHHHHHHhcCCcc
Q 025468 60 KGYGFVTFKEPEAAKKACEDATPII 84 (252)
Q Consensus 60 kG~aFV~F~~~e~A~~Ai~~~~~~l 84 (252)
+....+.+++.+.|.++|+..+.++
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKEKKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHHcCCEE
Confidence 4566778889999999988865543
No 255
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.70 E-value=36 Score=28.55 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=27.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISD 53 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d 53 (252)
..+.|+|||..++...|.++++. ..+.++.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999987 76766655543
No 256
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=28.41 E-value=46 Score=30.34 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 27 AWETPREALREHFD----KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 27 p~~~tee~L~~~F~----~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..+.+.-+|+.+|. .+|.|+++.+...+ ....+...++.|.+.++|.+++..+
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p-~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEE-CCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEee-cCceeEEEEEEcCCHHHHHHHHHHH
Confidence 34444456777763 46789998776554 2344567899999999999988775
No 257
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.22 E-value=24 Score=19.48 Aligned_cols=13 Identities=23% Similarity=0.601 Sum_probs=9.4
Q ss_pred CCcCcEEEEcCCC
Q 025468 15 DTTLTKVFVGGLA 27 (252)
Q Consensus 15 ~~~~~~lfVgnLp 27 (252)
+...++||||+-|
T Consensus 2 sgqvrtiwvggtp 14 (36)
T 2ki0_A 2 SGQVRTIWVGGTP 14 (36)
T ss_dssp CCSCCCCCBCCCH
T ss_pred CceeEEEEecCCH
Confidence 3467889998755
No 258
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.03 E-value=2.1e+02 Score=22.38 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=30.4
Q ss_pred CCHHHHHHHh--ccCCCeEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 025468 30 TPREALREHF--DKYGDILEAVIISDKLTGRSKGYGFVTFKE-PEAAKKACE 78 (252)
Q Consensus 30 ~tee~L~~~F--~~~G~I~~v~i~~d~~tg~skG~aFV~F~~-~e~A~~Ai~ 78 (252)
...++|++.| +.|..++ |+.+.++ ....|++.|+|.+ -.-...|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3457899977 8998865 5555554 2368999999974 333344443
No 259
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=27.97 E-value=1.1e+02 Score=18.92 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=44.2
Q ss_pred CCcCcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHhcCC
Q 025468 15 DTTLTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEAAKKACEDATP 82 (252)
Q Consensus 15 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~A~~Ai~~~~~ 82 (252)
+....++.|.++.-.--...+++.+.....|.++.+-.. .+-+.|.|.. .++..++|+.+|.
T Consensus 6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~Gy 71 (79)
T 1kvi_A 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDMGF 71 (79)
T ss_dssp TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 344567889899888788889999988877777776443 3467788863 4566777777654
No 260
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=27.55 E-value=82 Score=23.20 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhccCCCeEEEEEeecCCCCCcccEEEEEEc--CHHHHHHHHHhc-C----------
Q 025468 18 LTKVFVGGLAWETPREALR---EHFDKYGDILEAVIISDKLTGRSKGYGFVTFK--EPEAAKKACEDA-T---------- 81 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~---~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~--~~e~A~~Ai~~~-~---------- 81 (252)
.-.|-|.++|..+.+|--+ .+-..|..-..-.|+- ...|.--|.|. +.|..++||+++ .
T Consensus 42 ~l~i~itgvpeqvrkelakeaerl~~efni~v~y~img-----sgsgvm~i~f~gddlea~ekalkemirqarkfagtvt 116 (170)
T 4hhu_A 42 RLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMG-----SGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVT 116 (170)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC-----TTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEe-----CCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEE
Confidence 3456778888877664332 2223454333444433 23567777785 788899999876 2
Q ss_pred CccCCeeeEEEEcc
Q 025468 82 PIINGRRANCNLAS 95 (252)
Q Consensus 82 ~~l~G~~l~v~~a~ 95 (252)
..++|.+|.+.+.-
T Consensus 117 ytl~gn~l~i~itg 130 (170)
T 4hhu_A 117 YTLSGNRLVIVITG 130 (170)
T ss_dssp EEECSSEEEEEEES
T ss_pred EEEeCCEEEEEEeC
Confidence 23778888777653
No 261
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=27.46 E-value=35 Score=32.02 Aligned_cols=53 Identities=19% Similarity=0.063 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 27 AWETPREALREHFD----KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 27 p~~~tee~L~~~F~----~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
..+.+.-+|+.+|. .+|.|+++.+...+ ....+..+++.|.+.++|.+++..+
T Consensus 282 ~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p-~p~~~~~~~~~f~~~~~a~~~~~~~ 338 (584)
T 2uuu_A 282 ARSGAGINYKHIILGSEGTLGIITEAVMKVHA-VPQAVEYYGFLFPTFAHAVSALQQI 338 (584)
T ss_dssp -----CCCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccCCCcchhhhhccCCCCcEEEEEEEEEEEe-cccceEEEEEEcCCHHHHHHHHHHH
Confidence 33334456777763 46789998775554 2334567889999999999998875
No 262
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=27.15 E-value=76 Score=27.99 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=39.1
Q ss_pred EEEcCCCCCCC----HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCccCC
Q 025468 21 VFVGGLAWETP----REALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPIING 86 (252)
Q Consensus 21 lfVgnLp~~~t----ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~~~~l~G 86 (252)
-+||||..-.. .+.+.++.++||.|..+++. +.-+|...+.+.++.++......+.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~~~~~f~~ 77 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIKKGKDFSG 77 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTTTTTTTBB
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHhCcHhhCC
Confidence 46888764321 36678888899999888762 23567788999999888664333333
No 263
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.60 E-value=86 Score=24.19 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=37.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 025468 21 VFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~ 79 (252)
.|+-.++.+.+..+|++.++. |+ +|.+|..+.-+ .|. -=|+|++...++|......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~~~--KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-DGE--KKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS-SSC--EEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCc--eEEEEEECCCCcHHHHHHh
Confidence 445567888999999988864 66 67777666544 222 2489999877665554444
No 264
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=25.84 E-value=93 Score=23.81 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhcc-CCC---eEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 025468 28 WETPREALREHFDK-YGD---ILEA-VIISDKLTGRSKGYGFVTFKEPEAAKK 75 (252)
Q Consensus 28 ~~~tee~L~~~F~~-~G~---I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~ 75 (252)
..++..||++.+.. |+. ++-| .|...-..|++.|||.| |+|.|.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46788888887754 553 2222 22222234566788877 777777664
No 265
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=25.61 E-value=71 Score=24.57 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 025468 21 VFVGGLAWETPREALREHFDK-YG-DILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 79 (252)
Q Consensus 21 lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~ 79 (252)
.|+-.++.+.+..+|++.++. |+ +|.+|..+.-+ .|.. =|+|++....+|......
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~K--KAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DGKK--KAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TSSE--EEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCce--EEEEEcCCCCcHHHHHHh
Confidence 344456778888888887764 56 67777666544 2332 389999877666655444
No 266
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=25.14 E-value=55 Score=22.38 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=26.7
Q ss_pred CCHHHHHHHhccCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCccCCee
Q 025468 30 TPREALREHFDKYGDI-LEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA-TPIINGRR 88 (252)
Q Consensus 30 ~tee~L~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~l~G~~ 88 (252)
-||++|+++++.|-.- ..|+ ..|..++.++..+|.+.. ..+|+-+.
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrt 80 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRT 80 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeee
Confidence 4789999988877521 1121 234455667777776655 44444443
No 267
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=24.88 E-value=1.4e+02 Score=20.16 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=24.3
Q ss_pred CCCCCcCcEEEEcCCCCCCCHHHHHHHhccCCC
Q 025468 12 QFGDTTLTKVFVGGLAWETPREALREHFDKYGD 44 (252)
Q Consensus 12 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~ 44 (252)
...--...++||.++.. .+.++|+++...+|.
T Consensus 9 ~~~lF~g~~~~isg~~~-~~~~~L~~~i~~~GG 40 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTD-PSAEELRKLMMLHGG 40 (97)
T ss_dssp CCCTTTTCEEEECSSCS-SCHHHHHHHHHHTTC
T ss_pred CCCCCCCeEEEEeCCCc-ccHHHHHHHHHHcCC
Confidence 33446678999988753 468999999999875
No 268
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.83 E-value=53 Score=22.83 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=7.2
Q ss_pred cccEEEEEE
Q 025468 59 SKGYGFVTF 67 (252)
Q Consensus 59 skG~aFV~F 67 (252)
.|||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 489999963
No 269
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=24.48 E-value=1.8e+02 Score=20.04 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHhcCCc
Q 025468 18 LTKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEAAKKACEDATPI 83 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~A~~Ai~~~~~~ 83 (252)
..++.|.++.-.--...|++.+...-.|.++.+-.. .+-+.|.|.. .++..++|+.++..
T Consensus 9 ~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~Gy~ 72 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAALGYT 72 (111)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTTTCC
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHcCCe
Confidence 456788888877777889999998888888877443 3467888873 45667777776543
No 270
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.15 E-value=95 Score=23.13 Aligned_cols=47 Identities=6% Similarity=-0.028 Sum_probs=31.6
Q ss_pred EcCCCCCCCHHHHHHHhc-cCC--CeEEEEEeecCC----------CCCcccEEEEEEcC
Q 025468 23 VGGLAWETPREALREHFD-KYG--DILEAVIISDKL----------TGRSKGYGFVTFKE 69 (252)
Q Consensus 23 VgnLp~~~tee~L~~~F~-~~G--~I~~v~i~~d~~----------tg~skG~aFV~F~~ 69 (252)
|-.+...++++++++.+. .++ +|.++++-..+. .....+|-++.|++
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 556788899999999994 454 677776533321 12345788888876
No 271
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.78 E-value=26 Score=29.53 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=28.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeec
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISD 53 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d 53 (252)
..+.|+|||..++...|.++++....++.+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999987666766666554
No 272
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=23.66 E-value=1.2e+02 Score=17.80 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=39.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHhcCC
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEAAKKACEDATP 82 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~A~~Ai~~~~~ 82 (252)
++.|.++.-.--...+++.+.+...|.++.+-.. .+-..|.|.. .++..++|+.+|.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G~ 63 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINELGY 63 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 5778888776667789999988877888877443 3457788863 4556666766543
No 273
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=23.29 E-value=2.1e+02 Score=20.50 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=36.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhc-------cCCCeEEEEEeecCCC-CCcccE--EE-EEEcCHHHHHHHH
Q 025468 19 TKVFVGGLAWETPREALREHFD-------KYGDILEAVIISDKLT-GRSKGY--GF-VTFKEPEAAKKAC 77 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~-------~~G~I~~v~i~~d~~t-g~skG~--aF-V~F~~~e~A~~Ai 77 (252)
+-|-+-.|..++++++++++.+ +.-.|+++.+-++... +..+|| +| ++|+|.++.+.-.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3444447888888776544433 3567888888777532 444554 43 5788887765433
No 274
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.06 E-value=1.4e+02 Score=18.00 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHhcCC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFK---EPEAAKKACEDATP 82 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~---~~e~A~~Ai~~~~~ 82 (252)
.++.|.++.-.--...+++.+.+...|.++.+-.. .+-+.|+|. +.++..++|+.+|.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~Gy 64 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERAGY 64 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 45777777766667889999999888888877443 235677774 45667777777554
No 275
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.03 E-value=40 Score=22.18 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=8.9
Q ss_pred ccEEEEEEcCH
Q 025468 60 KGYGFVTFKEP 70 (252)
Q Consensus 60 kG~aFV~F~~~ 70 (252)
+..|||.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999874
No 276
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=21.84 E-value=1.3e+02 Score=17.74 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=38.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHhcCC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE---PEAAKKACEDATP 82 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~---~e~A~~Ai~~~~~ 82 (252)
.++.|.++.-.--...+++.+.....|.++.+-.. .+-+.|.|.. .++..++|+.+|.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~G~ 65 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERAGY 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHHTC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 35677777655555778899988888888877443 2457777763 4555666766553
No 277
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=21.62 E-value=38 Score=31.51 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHHHhc--cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 025468 35 LREHFD--KYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACE 78 (252)
Q Consensus 35 L~~~F~--~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~ 78 (252)
|..+|. .+|.|+++++...+ .-..+..+++.|.+.++|.++++
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p-~p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMP-NPGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEE-CCSCEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEe-CCCceEEEEEEcCCHHHHHHHHH
Confidence 455553 48889998776554 23345678899999999877764
No 278
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=21.57 E-value=1.5e+02 Score=25.04 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 025468 35 LREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDA 80 (252)
Q Consensus 35 L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Ai~~~ 80 (252)
+++.|+.+|.-.-..+ .|...|+-|+-+-+.++|++.++.+
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 4678888875432223 7888899999999999998887765
No 279
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.48 E-value=40 Score=29.58 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc
Q 025468 19 TKVFVGGLAWETPREALREHFDK 41 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~ 41 (252)
.-+.|+|||.+++..-|.++++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999988888864
No 280
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=20.87 E-value=1.8e+02 Score=24.44 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=34.8
Q ss_pred EEEEcCCCC-CCCHHHHHHHhccCC-------CeEEEEEeecCCCCCcccEEEE
Q 025468 20 KVFVGGLAW-ETPREALREHFDKYG-------DILEAVIISDKLTGRSKGYGFV 65 (252)
Q Consensus 20 ~lfVgnLp~-~~tee~L~~~F~~~G-------~I~~v~i~~d~~tg~skG~aFV 65 (252)
-|-|..+.. .++||+|+..+++|- .+=++.+...+.+|++--|.|.
T Consensus 168 Il~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~ 221 (270)
T 4a8j_B 168 IVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFI 221 (270)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEE
T ss_pred eEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEE
Confidence 344555554 689999999999873 5666777777779998888886
No 281
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=20.69 E-value=1.4e+02 Score=17.63 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=38.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHhcCC
Q 025468 20 KVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE---PEAAKKACEDATP 82 (252)
Q Consensus 20 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~---~e~A~~Ai~~~~~ 82 (252)
++.|.++.-.--...+++.+.....|.++.+-.. .+...|.|.. .++..++|+.+|.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~Gy 62 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAGLGY 62 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHTTTS
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHCCC
Confidence 4567777665556788899988888888877443 2456777763 4556677776543
No 282
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.46 E-value=44 Score=22.60 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.3
Q ss_pred ccEEEEEEcCHH
Q 025468 60 KGYGFVTFKEPE 71 (252)
Q Consensus 60 kG~aFV~F~~~e 71 (252)
+..|+|.|.|..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 567999998743
No 283
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.43 E-value=1.5e+02 Score=17.66 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=37.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHhcCC
Q 025468 19 TKVFVGGLAWETPREALREHFDKYGDILEAVIISDKLTGRSKGYGFVTFKE----PEAAKKACEDATP 82 (252)
Q Consensus 19 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~A~~Ai~~~~~ 82 (252)
.++.|.++.-.--...+++.+.....|.++.+-.. .+-+.|.|.. .++..++|+.+|.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDMGF 66 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHCCC
Confidence 35667676554445678888888777777776433 2457788863 4566777777653
No 284
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=20.35 E-value=1.5e+02 Score=21.09 Aligned_cols=58 Identities=3% Similarity=0.017 Sum_probs=35.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcc-------CCCeEEEEEeecCCCCCcccE--EE-EEEcCHHHHHHH
Q 025468 18 LTKVFVGGLAWETPREALREHFDK-------YGDILEAVIISDKLTGRSKGY--GF-VTFKEPEAAKKA 76 (252)
Q Consensus 18 ~~~lfVgnLp~~~tee~L~~~F~~-------~G~I~~v~i~~d~~tg~skG~--aF-V~F~~~e~A~~A 76 (252)
.+-|-+-.|..++++++++++.+. ...|+++.+-++. ++..+|| +| ++|+|.++.+.-
T Consensus 22 I~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~-s~~~~g~d~~l~~~F~s~edl~~Y 89 (116)
T 3bgu_A 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADL-GLAAGNYDFAVVADLDGEDGFRAY 89 (116)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECC-SCSTTCCSEEEEEEEEHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCC-CCCCCCeeEEEEEEECCHHHHHHH
Confidence 344444478888888765554433 4467888887776 3444554 43 577777766543
No 285
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.11 E-value=48 Score=17.24 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=10.3
Q ss_pred CHHHHHHHhccC
Q 025468 31 PREALREHFDKY 42 (252)
Q Consensus 31 tee~L~~~F~~~ 42 (252)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999998887
No 286
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=20.10 E-value=2.2e+02 Score=19.48 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=32.3
Q ss_pred cCCCCCCCHHHHHHHhc-------cCCCeEEEEEeecCCCCCcccE--E-EEEEcCHHHHHH
Q 025468 24 GGLAWETPREALREHFD-------KYGDILEAVIISDKLTGRSKGY--G-FVTFKEPEAAKK 75 (252)
Q Consensus 24 gnLp~~~tee~L~~~F~-------~~G~I~~v~i~~d~~tg~skG~--a-FV~F~~~e~A~~ 75 (252)
-.|..++++++++++.+ +...|+++++-++. ++..+|| + .++|+|.++.+.
T Consensus 11 fk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-~~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 11 MEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENV-AARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECC-CTTCTTCCEEEEEEESSHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCC-CCCCCCccEEEEEEECCHHHHHH
Confidence 36777777765544432 35678888888876 3554554 3 357888776543
Done!