BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025470
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 174/235 (74%), Gaps = 3/235 (1%)
Query: 16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCG 75
LP+KR+YR RAHSNP SD P+SP +D+S YP ++ A+ +KK+ ADIGCG
Sbjct: 9 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYP-YYKNAENGQMTKKVTIADIGCG 67
Query: 76 FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKY 133
FGGL+I LS FPE L++GME+R +VT YV++RI+ALR + + +QNI+V+R N+MK+
Sbjct: 68 FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 127
Query: 134 IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193
+PN+FEKGQL+KMFF FPDPHFK++ H+ R+I+ LL EYAYVL GG++YTITDV++L
Sbjct: 128 LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLH 187
Query: 194 DWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
+WM LE HP+FE L+KE E D VK++ +ATEEG+KV R G F A F R+
Sbjct: 188 EWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRL 242
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 174/235 (74%), Gaps = 3/235 (1%)
Query: 16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCG 75
LP+KR+YR RAHSNP SD P+SP +D+S YP ++ A+ +KK+ ADIGCG
Sbjct: 1 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYP-YYKNAENGQMTKKVTIADIGCG 59
Query: 76 FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKY 133
FGGL+I LS FPE L++GME+R +VT YV++RI+ALR + + +QNI+V+R N+MK+
Sbjct: 60 FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119
Query: 134 IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193
+PN+FEKGQL+KMFF FPDPHFK++ H+ R+I+ LL EYAYVL GG++YTITDV++L
Sbjct: 120 LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLH 179
Query: 194 DWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
+WM LE HP+FE L+KE E D VK++ +ATEEG+KV R G F A F R+
Sbjct: 180 EWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRL 234
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 259 bits (662), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 122/222 (54%), Positives = 161/222 (72%), Gaps = 12/222 (5%)
Query: 39 PISPSHVDYSLHYPHFFPPADQ------------VNCSKKIQFADIGCGFGGLLISLSTL 86
P+ P +D+S YP FF P Q +++FADIGCG+GGLL+ LS L
Sbjct: 8 PVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPL 67
Query: 87 FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146
FP+ L++G+E+R KV++YV++RI ALR + G +QNI+ +R+N+MK++PN+F KGQLTKM
Sbjct: 68 FPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127
Query: 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMF 206
FFLFPDPHFK H+ R+ISP LL EYAYVL VGG++YTITDV EL DWM + E HP+F
Sbjct: 128 FFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLF 187
Query: 207 EALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
E + E+L DPVV L ++TEEG+KV RNGG+ F A+FRRI
Sbjct: 188 ERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRI 229
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
++G G G + ++ P++ IG+EL V + A++ + QN+ ++ ++
Sbjct: 44 EVGTGKGQFISGMAKQNPDINYIGIELFKSVI------VTAVQKVKDSEAQNVKLLNIDA 97
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188
+ + FE G++ +++ F DP K+++ +RR+ H L +Y V+G GG I+ TD
Sbjct: 98 -DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
++G G G + + P++ IG++++ V Y +++L + V N I ++ +
Sbjct: 47 EVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN------IKLLWVDG 100
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188
+ +YFE G++ +++ F DP K+++ +RR+ LD + +L G I+ TD
Sbjct: 101 SD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157
>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
Length = 218
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
+IG G G L++++ PE +G+E+ L ++ N+ V+ ++
Sbjct: 40 EIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVG------ACLASAHEEGLSNLRVMCHDA 93
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
++ + L + FPDP K ++++RR++ + L +GG+ + TD E
Sbjct: 94 VEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153
Query: 191 ELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS--ATEEGQKVARNGGQTFQAVFRRI 248
+ M + + ++ L+ E++ V +S T+ Q+ R G + +F R+
Sbjct: 154 PYAEHMLEVMSSIDGYKNLS----ESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERV 209
>pdb|1ODF|A Chain A, Structure Of Ygr205w Protein
Length = 290
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 132 KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
KYIP +FE G +F F P K+ I HL+++Y +G
Sbjct: 18 KYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG 66
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 GLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY 137
GL + L L P+V +IG+ + V E K +++AL+ + GQ +++ T + +Y
Sbjct: 215 GLAVGLEHLMPDVELIGVTVSRSVAEQ-KPKVIALQQAIAGQ---LALTATADIHLWDDY 270
Query: 138 FEKG 141
F G
Sbjct: 271 FAPG 274
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 GLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY 137
GL + L L P+V +IG+ + V E K +++AL+ + GQ +++ T + +Y
Sbjct: 215 GLAVGLEHLMPDVELIGVTVSRSVAEQ-KPKVIALQQAIAGQ---LALTATADIHLWDDY 270
Query: 138 FEKG 141
F G
Sbjct: 271 FAPG 274
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 GLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY 137
GL + L L P+V +IG+ + V E K +++AL+ + GQ +++ T + +Y
Sbjct: 215 GLAVGLEHLMPDVELIGVTVSRSVAEQ-KPKVIALQQAIAGQ---LALTATADIHLWDDY 270
Query: 138 FEKG 141
F G
Sbjct: 271 FAPG 274
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 7 NPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYP 52
N ++ + L +K F R H N SDS + I S +D HYP
Sbjct: 101 NGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYP 146
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 84 STLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYI 134
ST VL++ + D++ E ++E++LAL + NP +I+ ++ T S Y+
Sbjct: 284 STAVKRVLVM-ESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYV 334
>pdb|2ESD|A Chain A, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|B Chain B, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|C Chain C, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|D Chain D, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2QE0|A Chain A, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|B Chain B, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|C Chain C, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|D Chain D, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement
Length = 475
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 97 LRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYI 134
+ D++ E ++E++LAL + NP +I+ ++ T S Y+
Sbjct: 296 VADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYV 334
>pdb|2ID2|A Chain A, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|B Chain B, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|C Chain C, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|D Chain D, Gapn T244s Mutant X-Ray Structure At 2.5 A
Length = 475
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 97 LRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYI 134
+ D++ E ++E++LAL + NP +I+ ++ T S Y+
Sbjct: 296 VADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYV 334
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
Length = 475
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 97 LRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYI 134
+ D++ E ++E++LAL + NP +I+ ++ T S Y+
Sbjct: 296 VADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYV 334
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 59 DQVNCSKKIQFADI----GCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV 114
D++ + KI+ +DI GCG G L + L L +V+ I ++ R + VK+R L
Sbjct: 32 DKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR--MISEVKKRCLY--- 86
Query: 115 SNPGQYQNISVVRTNSMKYI 134
Y N+ V +++K +
Sbjct: 87 ---EGYNNLEVYEGDAIKTV 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,724,671
Number of Sequences: 62578
Number of extensions: 318957
Number of successful extensions: 762
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 20
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)