RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025470
(252 letters)
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 76.8 bits (188), Expect = 1e-17
Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 9/177 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
++G G G + ++ P++ IG+EL V +++ N
Sbjct: 35 EVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID------- 87
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+ + FE G++ +++ F DP K+++ +RR+ H L +Y V+G GG I+ TD
Sbjct: 88 ADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 147
Query: 191 ELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR 247
L ++ + + +L + + + E +K + G ++A
Sbjct: 148 GLFEYSLKSFSEYGLLLTYVSLDLHNSNLEGNIMTEYE--EKFSALGQPIYRAEVEW 202
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 72.2 bits (176), Expect = 5e-16
Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
++G G G + ++ P++ IG++++ V Y AL NI ++ +
Sbjct: 37 EVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY------ALDKVLEVGVPNIKLLWVDG 90
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+ +YFE G++ +++ F DP K+++ +RR+ LD + +L G I+ TD
Sbjct: 91 SD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR 149
Query: 191 ELGDWMRSCLENHPMF-----EALTKEELEADPVVKLLSSATEEGQKVAR 235
L ++ + M L + E + + + + +GQ + R
Sbjct: 150 GLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKGQVIYR 199
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 37.1 bits (85), Expect = 0.001
Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 33/200 (16%)
Query: 42 PSHVDYSLHYPHFFPPADQVNCSKKIQFADI---------GCGFGGLLISLS-TLFPEVL 91
P+ DY + + + + DI G G GG+ + LS + +
Sbjct: 66 PALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGR 125
Query: 92 MIGMELRDKVTEYVKERI----LALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147
+I E+R + K+ + ++S+ ++ + + + +
Sbjct: 126 VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA 185
Query: 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY----TITDVEELGDWMRSCLENH 203
+PH L + L GG+ IT V EL D +R+C
Sbjct: 186 LDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTC--EL 230
Query: 204 PMFEALTKEELEADPVVKLL 223
+ E + D +V L
Sbjct: 231 ALSCEKISEVIVRDWLVCLA 250
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 35.9 bits (82), Expect = 0.003
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 5/160 (3%)
Query: 38 VPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMEL 97
+P P ++Y +H+ + S + DIG G + L + E+
Sbjct: 35 IPTVPLRLNY-IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEV 93
Query: 98 RDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKE 157
D Y K+ + +S+ + + + E+ ++ F + P F
Sbjct: 94 DDMCFNYAKKNVEQNNLSDLIKVVKV----PQKTLLMDALKEESEIIYDFCMCNPPFFAN 149
Query: 158 KNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR 197
+ + V S + + GGI + + EL R
Sbjct: 150 QLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR 189
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 34.8 bits (79), Expect = 0.008
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 59 DQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV---S 115
D++ + F D+G G G +++ ++ G+E D +Y + R
Sbjct: 145 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKW 204
Query: 116 NPGQYQNISVVRTN--SMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISP 167
++ ++ R + S ++ + F F + R +
Sbjct: 205 YGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE 258
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 34.2 bits (78), Expect = 0.009
Identities = 25/149 (16%), Positives = 42/149 (28%), Gaps = 17/149 (11%)
Query: 20 RFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGL 79
R +S P I P +H FP A + + G G G L
Sbjct: 60 LVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGA---------RVLEAGAGSGAL 110
Query: 80 LISLS-TLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF 138
+SL + P +I E R E+ + + P R +
Sbjct: 111 TLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN------WRLVVSDLADSEL 164
Query: 139 EKGQLTKMFFLFPDPHFKEKNHRRRVISP 167
G + + P + + R++
Sbjct: 165 PDGSVDRAVLDMLAPW-EVLDAVSRLLVA 192
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 33.6 bits (76), Expect = 0.014
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 17 PRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGF 76
R F + +H +PI P + D+++ K + +IG G
Sbjct: 24 DRSLFLPENLKDYAYAHTHEALPILPGI--NTTALNLGIFMLDELDLHKGQKVLEIGTGI 81
Query: 77 GGLLISLSTLFPEVLMIGM 95
G ++ + +V+ + +
Sbjct: 82 GYYTALIAEIVDKVVSVEI 100
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 32.2 bits (72), Expect = 0.041
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+ CG G I L V ++ DK+ +Y + R I +
Sbjct: 62 DVACGTGVDSIMLVEEGFSV--TSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 131 MKYIPNYFEKGQ----LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184
+ + L F PD + HR L A ++ GG++
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL------ALKNIASMVRPGGLLV 171
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 30.7 bits (68), Expect = 0.13
Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 36/174 (20%)
Query: 49 LHYPHFFPPADQVN-------CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKV 101
L H+ P D + K DIGCG G + + PE+ G+++
Sbjct: 61 LDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVA 120
Query: 102 TEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHR 161
+ + F D +
Sbjct: 121 IKA--------------------------AAKRYPQVTFCVASSHRLPFSDTSM---DAI 151
Query: 162 RRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELE 215
R+ +P +E A V+ GG + T T ++ + N A E+LE
Sbjct: 152 IRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLE 205
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 30.8 bits (69), Expect = 0.15
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 1 MLEQETNPTISKSTGLPRKRFYR------ARAHS-NPLSDSHFPVPISPSHVDYSLHYPH 53
+ Q + +PR + R+ H+ S +V L
Sbjct: 147 IPRQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYK-AFSN-YVYGELLPNF 204
Query: 54 FFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR 113
Q K F D+G G G ++ + L G E+ D ++ + L+
Sbjct: 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 114 VSN 116
Sbjct: 265 KRC 267
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 28.7 bits (63), Expect = 0.49
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
++G G L F ++ +E ++ + + + +
Sbjct: 26 ELGSFKGDFTSRLQEHFNDI--TCVEASEEAISHAQ---------GRLKDGITYIHSRFE 74
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISP 167
+P ++ LT + DP K ++
Sbjct: 75 DAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAE 111
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 28.8 bits (63), Expect = 0.49
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMI 93
D+ G G + + + +V+
Sbjct: 21 DVATGGGHVANAFAPFVKKVVAF 43
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 28.8 bits (63), Expect = 0.51
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
DIG G G ++ S E IG++ T+ + E + + S
Sbjct: 22 DIGAGAGHTALAFSPYVQEC--IGVDA----TKEMVEVASSFAQEKGVENVRFQQGTAES 75
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRR 162
+ + + F+ F D + R
Sbjct: 76 LPFPDDSFDIITCRYAAHHFSDVRKAVREVAR 107
>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 241
Score = 28.2 bits (62), Expect = 0.94
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
G+ T S P L + E A V+ +L + G+ V +G
Sbjct: 178 GLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGALR 237
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 28.1 bits (62), Expect = 0.96
Identities = 15/148 (10%), Positives = 40/148 (27%), Gaps = 23/148 (15%)
Query: 69 FADIGCGFGGLLISLS-TLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR 127
++G G G + + L + + +E + + + + +
Sbjct: 89 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR----- 143
Query: 128 TNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187
I ++ + PDP + + + A ++ G +
Sbjct: 144 ----SDIADFISDQMYDAVIADIPDP-------------WNHVQKIASMMKPGSVATFYL 186
Query: 188 DVEELGDWMRSCLENHPMFEALTKEELE 215
+ + L M T E ++
Sbjct: 187 PNFDQSEKTVLSLSASGMHHLETVELMK 214
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 27.4 bits (60), Expect = 1.3
Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT 128
D G GG ++ P +IG+++ +V +E++ ++ V
Sbjct: 27 ILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-----KEFSDRVSLFKVSY 81
Query: 129 NSMKYIPNYFEKGQLTKMFFLFP--DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186
++ ++ + K +N + L + +L GG I I
Sbjct: 82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLK-EFLKKAEDLLNPGGRIVVI 140
Query: 187 TDVEELGDWMRSCLENHPMFEALTK-------EELEADP 218
+ ++ N LT+ EE+ +P
Sbjct: 141 SFHSLEDRIVKETFRNSKKLRILTEKPVRPSEEEIRENP 179
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 27.6 bits (60), Expect = 1.3
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+GCG GG L+ G+++ + + R ++ ++ +
Sbjct: 30 DLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 88
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNH-RRRVISP 167
Q + + R + P
Sbjct: 89 DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 126
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 27.5 bits (60), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 64 SKKIQFADIGCGFGGLLISLSTLFPE 89
+K + D GCG+G L + L L PE
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPE 51
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 27.1 bits (59), Expect = 1.5
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 21/133 (15%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+GCG GG+ + L+ V ++ + + + G N++++ ++
Sbjct: 39 DVGCGTGGVTLELAGRVRRV--YAIDRNPEAISTTEMNLQRH-----GLGDNVTLMEGDA 91
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+ + + + +L L GG I +
Sbjct: 92 PEAL---CKIPDIDIAVVGGSGGEL-----------QEILRIIKDKLKPGGRIIVTAILL 137
Query: 191 ELGDWMRSCLENH 203
E CL +
Sbjct: 138 ETKFEAMECLRDL 150
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.4 bits (56), Expect = 1.9
Identities = 5/11 (45%), Positives = 10/11 (90%)
Query: 154 HFKEKNHRRRV 164
HF+ K+H++R+
Sbjct: 34 HFRSKDHKKRL 44
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.9 bits (58), Expect = 2.1
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+G G G +L + + + G+++ T K R L VS + +
Sbjct: 39 DLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFI----HNDAA 93
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRV 164
+ ++ E+ + +
Sbjct: 94 GYVANEKCDVAACVGATWIAGGFAGAEELLAQSL 127
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 25.5 bits (56), Expect = 2.8
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 204 PMFEALTKEELEADPVV---------------KLLSSATEEGQKVARNGGQTFQAVFRRI 248
+++ + ADP V +LL + E ++++ QTF FRRI
Sbjct: 3 KIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRI 62
>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase,
PGDH {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 26.5 bits (58), Expect = 3.2
Identities = 4/53 (7%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 188 DVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
++ + ++ + + L + A+ ++ L+ G + +
Sbjct: 197 NMGQYIEYKDHIKDMIKYYGILDPPLI-ANGLITLIEDDALNGAIMKITTSKG 248
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
monocytogenes [TaxId: 1639]}
Length = 328
Score = 26.5 bits (57), Expect = 3.4
Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
Query: 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS 124
K + D CG LL ++ + + + I V Q Q ++
Sbjct: 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASG--VDVDDLLISLALVGADLQRQKMT 174
Query: 125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYV 176
++ + + + ++ + + K H + ++
Sbjct: 175 LLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFI 226
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 106
Score = 24.9 bits (54), Expect = 5.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 180 GGIIYTITDVEELGDW 195
G IY + +V ELG+W
Sbjct: 20 GQNIYIVGNVYELGNW 35
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 26.0 bits (56), Expect = 5.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 71 DIGCGFGGLLISLSTLFPEV 90
D+GCG G L + + +
Sbjct: 44 DVGCGTGILSMFAAKHGAKH 63
>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a
cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
Length = 261
Score = 25.2 bits (54), Expect = 7.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 122 NISVVRTNSMKYIPNYFEKGQLTKMFFLFP 151
S + + +P E+ LT+ F+LFP
Sbjct: 231 RFSFEQPDGRAQMP-TTERVTLTRCFYLFP 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 994,764
Number of extensions: 48378
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 35
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)