BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025472
         (252 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|190710541|gb|ACE95101.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 336

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/251 (99%), Positives = 251/251 (100%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL
Sbjct: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH+ASDIHYQGRQ
Sbjct: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHFASDIHYQGRQ 325

Query: 242 LRESPAPLGYH 252
           LRESPAPLGYH
Sbjct: 326 LRESPAPLGYH 336


>gi|297830954|ref|XP_002883359.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329199|gb|EFH59618.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 354

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 223/251 (88%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y ADL+IDLKKHH PTTF D++A WTVKSL
Sbjct: 104 IASYWGVEPNKITKEDGSEWKWNCFRPWETYNADLTIDLKKHHVPTTFLDRLAYWTVKSL 163

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 164 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 223

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 224 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 283

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 284 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVIVVRADEAHHRDVNHFASDIHYQGRE 343

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 344 LKEAPAPIGYH 354


>gi|327554104|gb|AEB00555.1| mitochondrial alternative oxidase 1a [Brassica juncea]
          Length = 360

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/251 (88%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DG+EWKWNCFRPWE Y+ADL+IDL KHH PTTF D++A WTVKSL
Sbjct: 110 IASYWGVEPSKITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSL 169

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 170 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 229

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 230 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 289

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 290 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 349

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 350 LKEAPAPIGYH 360


>gi|15228734|ref|NP_188876.1| alternative oxidase 1A [Arabidopsis thaliana]
 gi|3915639|sp|Q39219.2|AOX1A_ARATH RecName: Full=Ubiquinol oxidase 1a, mitochondrial; AltName:
           Full=Alternative oxidase 1a; Flags: Precursor
 gi|13877807|gb|AAK43981.1|AF370166_1 putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|2506083|dbj|BAA22625.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293872|dbj|BAB01775.1| alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|16323480|gb|AAL15234.1| putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|332643106|gb|AEE76627.1| alternative oxidase 1A [Arabidopsis thaliana]
          Length = 354

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 104 IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 163

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 164 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 223

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 224 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 283

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 284 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 343

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 344 LKEAPAPIGYH 354


>gi|224118194|ref|XP_002317754.1| predicted protein [Populus trichocarpa]
 gi|222858427|gb|EEE95974.1| predicted protein [Populus trichocarpa]
          Length = 336

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/251 (89%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV   +V K+DG+EWKWNCFRPWE Y ADLSI+L KHHAP TF DKMA WTVKSL
Sbjct: 86  IVSYWGVPPSRVTKEDGTEWKWNCFRPWETYSADLSINLTKHHAPVTFLDKMAYWTVKSL 145

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA P+WYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 206 MHLMTFMEVANPRWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNI+NVPAPAIA DYWRLPPNSTL+DVV VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 266 LKELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRE 325

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 326 LKEAPAPIGYH 336


>gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana]
          Length = 353

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 103 IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 163 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 283 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 342

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 343 LKEAPAPIGYH 353


>gi|82409049|gb|ABB73306.1| alternative oxidase [Gossypium hirsutum]
          Length = 330

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/251 (88%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG++  KV+K+DGS WKW CFRPW+ Y+ADLSIDLKKHHAP T  DKMA WTVKSL
Sbjct: 80  IVSYWGLDPTKVSKEDGSPWKWTCFRPWDTYQADLSIDLKKHHAPVTVLDKMAYWTVKSL 139

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 140 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 199

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV+ P+WYERALVFAVQGVFFNAYFLGY+ISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 200 MHLMTFMEVSDPRWYERALVFAVQGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEF 259

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELD GNIENVPAP IA DYWRLPPNSTL+DVVL VRADEAHHRDVNH+ASDIHYQGRQ
Sbjct: 260 LKELDNGNIENVPAPPIAIDYWRLPPNSTLRDVVLAVRADEAHHRDVNHFASDIHYQGRQ 319

Query: 242 LRESPAPLGYH 252
           L+E+PAPLGYH
Sbjct: 320 LKEAPAPLGYH 330


>gi|166876|gb|AAA32870.1| oxidase [Arabidopsis thaliana]
          Length = 305

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 55  IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 114

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 115 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 174

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 175 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 234

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 235 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 294

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 295 LKEAPAPIGYH 305


>gi|70799007|gb|AAZ09196.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
 gi|70799009|gb|AAZ09197.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
          Length = 316

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/251 (89%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGVE  K+ K DG+EWKWNCFRPWE Y+AD+SIDL KHHAPTTF DKMALWTVK+L
Sbjct: 66  IVSYWGVEPSKITKLDGTEWKWNCFRPWETYKADVSIDLNKHHAPTTFLDKMALWTVKTL 125

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTDLFFQRRYGCRAMMLETVAAVPGMV GMLLH KSLRRFEHSGGWIKALLEEAENER
Sbjct: 126 RYPTDLFFQRRYGCRAMMLETVAAVPGMVAGMLLHLKSLRRFEHSGGWIKALLEEAENER 185

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGY+ISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 186 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYMISPKFAHRMVGYLEEEAIHSYTEF 245

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYW+LPP+STLKDVV VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 246 LKELDKGNIENVPAPAIAIDYWQLPPDSTLKDVVTVVRADEAHHRDVNHFASDIHYQGRE 305

Query: 242 LRESPAPLGYH 252
           LRE+ AP+GYH
Sbjct: 306 LREAAAPIGYH 316


>gi|1872517|gb|AAB49302.1| alternative oxidase, partial [Arabidopsis thaliana]
          Length = 287

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 37  IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 96

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 97  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 156

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 157 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 216

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 217 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 276

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 277 LKEAPAPIGYH 287


>gi|312282139|dbj|BAJ33935.1| unnamed protein product [Thellungiella halophila]
          Length = 357

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 220/251 (87%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DG+EWKWNCFRPWE Y+ADL+IDL KHH PTTF D++A WTVKSL
Sbjct: 107 IDSYWGVEPNKITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSL 166

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 167 RWPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 226

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 227 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 286

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 287 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 346

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 347 LKEAPAPIGYH 357


>gi|116488305|gb|ABJ98721.1| alternative oxidase [Gossypium hirsutum]
          Length = 331

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/251 (88%), Positives = 235/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG++  KV+K+DGS WKW CFRPW+ Y ADLSIDLKKHHAP T  DKMA WTVKSL
Sbjct: 81  IVSYWGLDPTKVSKEDGSPWKWTCFRPWDTYRADLSIDLKKHHAPVTVLDKMAYWTVKSL 140

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 141 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 200

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV+ P+WYERALVF+VQGVFFNAYFLGY+ISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 201 MHLMTFMEVSDPRWYERALVFSVQGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEF 260

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELD GNIENVPAP IA DYWRL PNSTL+DVVL VRADEAHHRDVNH+ASDIHYQGRQ
Sbjct: 261 LKELDNGNIENVPAPPIAIDYWRLSPNSTLRDVVLAVRADEAHHRDVNHFASDIHYQGRQ 320

Query: 242 LRESPAPLGYH 252
           L+E+PAPLGYH
Sbjct: 321 LKEAPAPLGYH 331


>gi|6634501|emb|CAB64356.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 351

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 218/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGV   +V K+DG+EWKWNCFRPWE Y ADLSIDLKKHH P TF DKMA W VK+L
Sbjct: 101 IASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLSIDLKKHHVPATFLDKMAYWMVKAL 160

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENER
Sbjct: 161 RFPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENER 220

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP+WYERALV  VQGVF NAYFLGY+ISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 221 MHLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYIISPKFAHRMVGYLEEEAIHSYTEF 280

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLPP++TL+DVVLVVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 281 LKELDKGNIENVPAPAIAVDYWRLPPDATLRDVVLVVRADEAHHRDVNHFASDIHYQGRE 340

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 341 LKEAPAPIGYH 351


>gi|357484585|ref|XP_003612580.1| Alternative oxidase [Medicago truncatula]
 gi|355513915|gb|AES95538.1| Alternative oxidase [Medicago truncatula]
          Length = 330

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 220/251 (87%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGV+  K+ K DG+EWKWNCFRPWE Y+AD++IDL KHH PTTF DKMA WTVKSL
Sbjct: 80  ITSYWGVQPSKITKPDGTEWKWNCFRPWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSL 139

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 140 RWPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 199

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 200 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEF 259

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYW+LP NSTL+DVV VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 260 LKELDKGNIENVPAPAIAIDYWQLPQNSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRE 319

Query: 242 LRESPAPLGYH 252
           LRE+ AP+GYH
Sbjct: 320 LREAAAPIGYH 330


>gi|400530644|gb|AFP86473.1| mitochondrial alternative oxidase [Brassica rapa subsp. chinensis]
          Length = 427

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 218/248 (87%), Positives = 234/248 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DG+EWKWNCFRPWE Y+ADL+IDL KHH PTTF D++A WTVKSL
Sbjct: 110 IASYWGVEPSKITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSL 169

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 170 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 229

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 230 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 289

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 290 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 349

Query: 242 LRESPAPL 249
           L+E+PAP+
Sbjct: 350 LKEAPAPI 357


>gi|117646985|dbj|BAF36564.1| alternative oxidase [Nicotiana tabacum]
          Length = 353

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 218/251 (86%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV+  KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVKSL
Sbjct: 103 VVSYWGVQPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIK LL+EAENER
Sbjct: 163 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVVLVVRADEAHHRDVNH+ASDIHYQG+Q
Sbjct: 283 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGQQ 342

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 343 LKDSPAPIGYH 353


>gi|155573899|gb|ABU24346.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
 gi|155573901|gb|ABU24347.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
          Length = 353

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/251 (87%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+L
Sbjct: 103 VVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKAL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 163 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVVLVVRADEAHHRDVNH+ASDIHYQG+Q
Sbjct: 283 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGQQ 342

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 343 LKDSPAPIGYH 353


>gi|297830952|ref|XP_002883358.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329198|gb|EFH59617.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 324

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/252 (86%), Positives = 238/252 (94%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T SDK+A WTVKS
Sbjct: 73  LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLSDKLAYWTVKS 132

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LRWPTD+FFQRRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENE
Sbjct: 133 LRWPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENE 192

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKP WYERALV AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE
Sbjct: 193 RMHLMTFMEVAKPNWYERALVIAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 252

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR
Sbjct: 253 FLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGR 312

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 313 ELKEAPAPIGYH 324


>gi|15228729|ref|NP_188875.1| alternative oxidase 1B [Arabidopsis thaliana]
 gi|3913143|sp|O23913.1|AOX1B_ARATH RecName: Full=Ubiquinol oxidase 1b, mitochondrial; AltName:
           Full=Alternative oxidase 1b; Flags: Precursor
 gi|2506082|dbj|BAA22624.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293871|dbj|BAB01774.1| alternative oxidase 1b precursor [Arabidopsis thaliana]
 gi|67633654|gb|AAY78751.1| mitochondrial alternative oxidase 1b [Arabidopsis thaliana]
 gi|332643105|gb|AEE76626.1| alternative oxidase 1B [Arabidopsis thaliana]
          Length = 325

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/252 (85%), Positives = 237/252 (94%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T  DK+A WTVKS
Sbjct: 74  LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKS 133

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENE
Sbjct: 134 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENE 193

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKP WYERALV AVQG+FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE
Sbjct: 194 RMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 253

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR
Sbjct: 254 FLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGR 313

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 314 ELKEAPAPIGYH 325


>gi|40036979|gb|AAR37364.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 349

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 218/251 (86%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADL+IDL KHHAPTTF DK A WTVK+L
Sbjct: 99  VVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLTIDLTKHHAPTTFLDKFAYWTVKAL 158

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 159 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 218

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 219 MHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLVSPKLAHRIVGYLEEEAIHSYTEF 278

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVVLVVRADEAHHRDVNH+ASDIHYQG+Q
Sbjct: 279 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGQQ 338

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 339 LKDSPAPIGYH 349


>gi|224135251|ref|XP_002322021.1| predicted protein [Populus trichocarpa]
 gi|222869017|gb|EEF06148.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 218/251 (86%), Positives = 232/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGV   +V K+DG+EWKWNCFRPWE Y ADLSIDLKKHH P T  DKMA W VK+L
Sbjct: 31  IASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLSIDLKKHHVPATVLDKMAFWIVKAL 90

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENER
Sbjct: 91  RLPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENER 150

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP+WYERALV  VQGVF NAYFLGY+ISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 151 MHLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYIISPKFAHRMVGYLEEEAIHSYTEF 210

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLPPN+TL+DVVLVVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 211 LKELDKGNIENVPAPAIAVDYWRLPPNATLRDVVLVVRADEAHHRDVNHFASDIHYQGRE 270

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 271 LKEAPAPIGYH 281


>gi|1588565|prf||2208475A alternative oxidase 1
          Length = 344

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/251 (86%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V K+DGS W+W CFRPWEAYE+D+SIDLKKHHAPTTF DKMA WTVKSL
Sbjct: 94  VVSYWGVPPSRVTKEDGSPWRWACFRPWEAYESDMSIDLKKHHAPTTFLDKMAFWTVKSL 153

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIKALLEEAENER
Sbjct: 154 RWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKALLEEAENER 213

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 214 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 273

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG I+NVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 274 LKEIDKGTIDNVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 333

Query: 242 LRESPAPLGYH 252
           L+E+PAPLGYH
Sbjct: 334 LKEAPAPLGYH 344


>gi|224118198|ref|XP_002317755.1| predicted protein [Populus trichocarpa]
 gi|222858428|gb|EEE95975.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 218/250 (87%), Positives = 234/250 (93%)

Query: 3   VSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLR 62
           VSYWGV   +V K+DG+EWKWN FRPWE Y ADLSI+L KHHAP T  D+MA WTVKSLR
Sbjct: 4   VSYWGVPPSRVTKEDGTEWKWNSFRPWETYSADLSINLTKHHAPVTLLDRMAYWTVKSLR 63

Query: 63  WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 122
           WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC+SLRRFEHSGGWIKALLEEAENERM
Sbjct: 64  WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAENERM 123

Query: 123 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 182
           HLMTFMEV+ P+WYERALVF VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL
Sbjct: 124 HLMTFMEVSNPRWYERALVFTVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 183

Query: 183 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           KELDKGNI+NVPAPAIA DYWRLPPNSTL+DVV+ VRADEAHHRDVNH+ASDIHYQGR+L
Sbjct: 184 KELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVVAVRADEAHHRDVNHFASDIHYQGREL 243

Query: 243 RESPAPLGYH 252
           +E+PAP+GYH
Sbjct: 244 KEAPAPIGYH 253


>gi|3023316|sp|Q41224.1|AOX1_TOBAC RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|558054|gb|AAC60576.1| alternative oxidase [Nicotiana tabacum]
 gi|1090812|prf||2019465A Aox1 gene
          Length = 353

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV+  KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVKSL
Sbjct: 103 VVSYWGVQPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIK LL+EAENER
Sbjct: 163 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DY RLP +STL DVVLVVRADEAHHRDVNH+ASDIHYQG+Q
Sbjct: 283 LKELDKGNIENVPAPAIAIDYCRLPKDSTLLDVVLVVRADEAHHRDVNHFASDIHYQGQQ 342

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 343 LKDSPAPIGYH 353


>gi|308153048|dbj|BAJ22113.1| alternative oxidase 1f [Arum maculatum]
          Length = 343

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   ++ K+DGS W+W CFRPWE YE DLSIDLKKHHAPTTF DKMALWTVKSL
Sbjct: 93  VVSYWGVPPSRMTKEDGSPWRWTCFRPWETYEPDLSIDLKKHHAPTTFLDKMALWTVKSL 152

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LLEEAENER
Sbjct: 153 RWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENER 212

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 213 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEF 272

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 273 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 332

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 333 LKAAPAPLGYH 343


>gi|308153040|dbj|BAJ22109.1| alternative oxidase 1b [Arum maculatum]
          Length = 346

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/251 (85%), Positives = 233/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           + SYWGV   ++ K+DGS W+W CFRPWE YE DLSIDLKKHHAPTTF DKMALWTVKSL
Sbjct: 96  VASYWGVPPSRMTKEDGSPWRWTCFRPWETYEPDLSIDLKKHHAPTTFLDKMALWTVKSL 155

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LLEEAENER
Sbjct: 156 RWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENER 215

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 216 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEF 275

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 276 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 335

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 336 LKAAPAPLGYH 346


>gi|351720843|ref|NP_001236166.1| ubiquinol oxidase 1, mitochondrial [Glycine max]
 gi|3334449|sp|Q07185.1|AOX1_SOYBN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|395216|emb|CAA48653.1| alternative oxidase [Glycine max]
 gi|740229|prf||2004454A respiratory chain terminal oxidase
          Length = 321

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 232/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWG++  K+ K DG+EWKWNCF PW  Y+ADLSIDL+KH  PTTF DKMA WTVK 
Sbjct: 70  VIVSYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKV 129

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLHCKSLRRFEHSGGW KALLEEAENE
Sbjct: 130 LRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENE 189

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAHRM GYLEEEAIHSYTE
Sbjct: 190 RMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTE 249

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELDKGNIENVPAPAIA DYW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR
Sbjct: 250 FLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGR 309

Query: 241 QLRESPAPLGYH 252
           +LRE+ AP+GYH
Sbjct: 310 ELREAAAPIGYH 321


>gi|404160475|gb|AFR53081.1| AOX [Anthurium andraeanum]
          Length = 345

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/251 (85%), Positives = 231/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV KDDGS W+W  FRPWE Y+ADLSIDLKKHHAPTT  DK+A WTVKSL
Sbjct: 95  VVSYWGVPPSKVTKDDGSAWRWASFRPWETYQADLSIDLKKHHAPTTILDKVAFWTVKSL 154

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIK LLEEAENER
Sbjct: 155 RWPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKGLLEEAENER 214

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV +P+WYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 215 MHLMTFMEVVQPRWYERALVMTVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 274

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+V+RADEAHHRDVNH+ASDIHYQGR+
Sbjct: 275 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVIRADEAHHRDVNHFASDIHYQGRE 334

Query: 242 LRESPAPLGYH 252
           LR +PAPLGYH
Sbjct: 335 LRTAPAPLGYH 345


>gi|3599419|gb|AAC35354.1| alternative oxidase precursor [Glycine max]
          Length = 321

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 232/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWG++  K+ K DG+EWKWNCFR W  Y+ADLSIDL+KH  PTTF DKMA WTVK 
Sbjct: 70  VIVSYWGIQPSKITKKDGTEWKWNCFRAWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKV 129

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMV GM LHCKSLRRFEHSGGW KALLEEAENE
Sbjct: 130 LRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMQLHCKSLRRFEHSGGWFKALLEEAENE 189

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAHRMVGYLEEEAIHSYTE
Sbjct: 190 RMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTE 249

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELDKGNIENVPAPAIA DYW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR
Sbjct: 250 FLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGR 309

Query: 241 QLRESPAPLGYH 252
           +LRE+ AP+GYH
Sbjct: 310 ELREAAAPIGYH 321


>gi|3913066|sp|Q40578.2|AOX2_TOBAC RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
          Length = 297

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+L
Sbjct: 47  VVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKAL 106

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 107 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 166

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVF NAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 167 MHLMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEF 226

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVVLVVRADEAHHRDVNH+A DIHYQG+Q
Sbjct: 227 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQ 286

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 287 LKDSPAPIGYH 297


>gi|308153038|dbj|BAJ22108.1| alternative oxidase 1a [Arum maculatum]
          Length = 347

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/251 (84%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 97  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKAL 156

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LLEEAENER
Sbjct: 157 RWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENER 216

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 217 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEF 276

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 277 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 336

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 337 LKAAPAPLGYH 347


>gi|269784500|dbj|BAI49704.1| alternative oxidase [Lysichiton camtschatcensis]
          Length = 352

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/251 (84%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K  K+DGSEW+W+CFRPWE YEAD+SIDLKKHHAPTTF DK+A WTVKSL
Sbjct: 102 VVSYWGVPPSKATKEDGSEWRWSCFRPWETYEADMSIDLKKHHAPTTFLDKLAFWTVKSL 161

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LLEEAENER
Sbjct: 162 RYPTDVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENER 221

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 222 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 281

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+D G IENVPAPAIA DYWRLP  STL+DVV+VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 282 LKEIDNGTIENVPAPAIALDYWRLPQGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHE 341

Query: 242 LRESPAPLGYH 252
           L+++PAPLGYH
Sbjct: 342 LKKAPAPLGYH 352


>gi|350539075|ref|NP_001234117.1| alternative oxidase 1a [Solanum lycopersicum]
 gi|29465622|gb|AAK58482.1| alternative oxidase 1a [Solanum lycopersicum]
          Length = 358

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/251 (86%), Positives = 229/251 (91%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K  K DG+EWKWNCFRPWE YEAD+SIDL KHHAP TF DK A WTVK L
Sbjct: 108 VVSYWGVPPSKATKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKIL 167

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 168 RFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 227

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP  YERALVFAVQGVFFNAYF  YLISPK AHR+VGYLEEEA+HSYTEF
Sbjct: 228 MHLMTFMEVAKPNVYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEF 287

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELD GNIENVPAPAIA DYWRLP ++TL+DVVLVVRADEAHHRDVNHYASDIHYQG+Q
Sbjct: 288 LKELDNGNIENVPAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASDIHYQGQQ 347

Query: 242 LRESPAPLGYH 252
           L++SPAPLGYH
Sbjct: 348 LKDSPAPLGYH 358


>gi|297818362|ref|XP_002877064.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322902|gb|EFH53323.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 330

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 233/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWGV+  K+ K+DG+EWKW CFRPWE Y+ADL+IDLKKHH P+T  DK+A W VKS
Sbjct: 79  LIVSYWGVKPMKITKEDGTEWKWTCFRPWETYKADLTIDLKKHHVPSTLPDKLAYWMVKS 138

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML+H KSLRRFE SGGWIKALLEEAENE
Sbjct: 139 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENE 198

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV AVQGVFFNAY LGYLISPKFAHRMVGYLEEEAIHSYTE
Sbjct: 199 RMHLMTFMEVAKPKWYERALVIAVQGVFFNAYLLGYLISPKFAHRMVGYLEEEAIHSYTE 258

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG 
Sbjct: 259 FLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGH 318

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 319 ELKEAPAPIGYH 330


>gi|226897263|dbj|BAH56640.1| alternative oxidase 1b [Nelumbo nucifera]
          Length = 348

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/251 (85%), Positives = 230/251 (91%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG+   KV K+DG+ W+WN FRPWE Y+ADLSIDLKKHH P  F DKMA WTVK+L
Sbjct: 98  IVSYWGLVPSKVTKEDGTVWRWNSFRPWETYQADLSIDLKKHHEPNKFLDKMAYWTVKTL 157

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTDLFFQRRYGCRAMMLETVAAVPGMV GMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 158 RYPTDLFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWIKALLEEAENER 217

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++PKWYERALVF VQG+FFNAYFL YLISPK AHR VGYLEEEAIHSYTEF
Sbjct: 218 MHLMTFMEVSQPKWYERALVFTVQGIFFNAYFLAYLISPKLAHRAVGYLEEEAIHSYTEF 277

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYW LPP+STL+DVVL VRADEAHHRDVNH+ASDIH+QG++
Sbjct: 278 LKELDKGNIENVPAPAIAIDYWHLPPDSTLRDVVLAVRADEAHHRDVNHFASDIHFQGQE 337

Query: 242 LRESPAPLGYH 252
           LRE PAPLGYH
Sbjct: 338 LREIPAPLGYH 348


>gi|633600|emb|CAA56163.1| alternative oxidase [Nicotiana tabacum]
          Length = 297

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/251 (86%), Positives = 233/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+L
Sbjct: 47  VVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKAL 106

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 107 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 166

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVF NAYF+ YL+SPK A R+VGYLEEEAIHSYTEF
Sbjct: 167 MHLMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAXRIVGYLEEEAIHSYTEF 226

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVVLVVRADEAHHRDVNH+A DIHYQG+Q
Sbjct: 227 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQ 286

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 287 LKDSPAPIGYH 297


>gi|308153042|dbj|BAJ22110.1| alternative oxidase 1c [Arum maculatum]
          Length = 343

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/251 (84%), Positives = 235/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 93  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKAL 152

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LLEEAENER
Sbjct: 153 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENER 212

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 213 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEF 272

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 273 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 332

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 333 LKAAPAPLGYH 343


>gi|308153044|dbj|BAJ22111.1| alternative oxidase 1d [Arum maculatum]
          Length = 343

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/251 (84%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 93  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKAL 152

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENER
Sbjct: 153 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENER 212

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 213 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEF 272

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 273 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 332

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 333 LKAAPAPLGYH 343


>gi|225571959|gb|ABZ81227.2| mitochondrial alternative oxidase 1a [Daucus carota]
          Length = 326

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 210/252 (83%), Positives = 234/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG++  +V K+DG+ WKWNCFRPWE Y+ADL+IDLKKHH PTTF DK+A WTVKS
Sbjct: 75  VVASYWGIKGEEVKKEDGTPWKWNCFRPWETYQADLTIDLKKHHVPTTFLDKLAYWTVKS 134

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENE
Sbjct: 135 LRFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENE 194

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEV++P+WYERALVF VQGVFFNAYFL YL SPK AHR+VGYLEEEAIHSYTE
Sbjct: 195 RMHLMTFMEVSQPRWYERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIHSYTE 254

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELDKG IENVPAPAIA DYWRLP +STL+DVV+VVRADEAHHRDVNH+ASDIHYQG 
Sbjct: 255 FLKELDKGTIENVPAPAIAIDYWRLPADSTLRDVVMVVRADEAHHRDVNHFASDIHYQGH 314

Query: 241 QLRESPAPLGYH 252
           +L++SPAPLGYH
Sbjct: 315 ELKDSPAPLGYH 326


>gi|40036985|gb|AAR37365.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 353

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADL+IDL KHHAPTTF DK A WTVK+L
Sbjct: 103 VVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLTIDLTKHHAPTTFLDKFAYWTVKAL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 163 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLVSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVV+VVRADEAHHRDVNH+ASDIHYQG+Q
Sbjct: 283 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVVVVRADEAHHRDVNHFASDIHYQGQQ 342

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 343 LKDSPAPIGYH 353


>gi|57157824|dbj|BAD83866.1| skunk cabbage alternative oxidase [Symplocarpus renifolius]
          Length = 349

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 210/251 (83%), Positives = 233/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VS+WG+   K  K+DGSEW+W+CFRPWE YEADLSIDLKKHHAPTTF DK+A WTVKSL
Sbjct: 99  VVSHWGIPPSKATKEDGSEWRWSCFRPWETYEADLSIDLKKHHAPTTFLDKLAFWTVKSL 158

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LL EAENER
Sbjct: 159 RYPTDVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLNEAENER 218

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 219 MHLMTFMEVSEPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 278

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           +KE+D G IENVPAPAIA DYWRLP  STL+DVV+VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 279 IKEIDNGTIENVPAPAIALDYWRLPQGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHE 338

Query: 242 LRESPAPLGYH 252
           L++SPAPLGYH
Sbjct: 339 LKKSPAPLGYH 349


>gi|46452193|gb|AAS98193.1| alternative oxidase 1au [Solanum lycopersicum]
          Length = 358

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/251 (85%), Positives = 228/251 (90%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K  K DG+EWKWNCFRPWE YEAD+SIDL KHHAP TF DK A WTVK L
Sbjct: 108 VVSYWGVPPSKATKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKIL 167

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 168 RFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 227

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP  YERALVFAVQGVFFNAYF  YLISPK AHR+VGYLEEEA+ SYTEF
Sbjct: 228 MHLMTFMEVAKPNVYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVLSYTEF 287

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELD GNIENVPAPAIA DYWRLP ++TL+DVVLVVRADEAHHRDVNHYASDIHYQG+Q
Sbjct: 288 LKELDNGNIENVPAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASDIHYQGQQ 347

Query: 242 LRESPAPLGYH 252
           L++SPAPLGYH
Sbjct: 348 LKDSPAPLGYH 358


>gi|224228409|dbj|BAH23672.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/251 (84%), Positives = 235/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+AD SIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 96  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADFSIDLQKHHAPTTILDKLALYTVKAL 155

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENER
Sbjct: 156 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENER 215

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 216 MHLMTFMEVAQPRWYERALVVAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEF 275

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 276 LKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQ 335

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 336 LKAAPAPLGYH 346


>gi|15232222|ref|NP_189399.1| alternative oxidase 1C [Arabidopsis thaliana]
 gi|3913142|sp|O22048.1|AOX1C_ARATH RecName: Full=Ubiquinol oxidase 1c, mitochondrial; AltName:
           Full=Alternative oxidase 1c; Flags: Precursor
 gi|2506049|dbj|BAA22635.1| alternative oxidase [Arabidopsis thaliana]
 gi|9294467|dbj|BAB02686.1| alternative oxidase [Arabidopsis thaliana]
 gi|28393506|gb|AAO42174.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|28973125|gb|AAO63887.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|332643824|gb|AEE77345.1| alternative oxidase 1C [Arabidopsis thaliana]
          Length = 329

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/252 (83%), Positives = 234/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y+ADL+IDLKKHH P+T  DK+A W VKS
Sbjct: 78  LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAYWMVKS 137

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LRWPTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLRRFE SGGWIKALLEEAENE
Sbjct: 138 LRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENE 197

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV +VQGVFFNAY +GY+ISPKFAHRMVGYLEEEAIHSYTE
Sbjct: 198 RMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTE 257

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG 
Sbjct: 258 FLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGH 317

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 318 ELKEAPAPIGYH 329


>gi|226897261|dbj|BAH56639.1| alternative oxidase 1a [Nelumbo nucifera]
          Length = 344

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/252 (84%), Positives = 232/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           MIVSYWG+    + K DGSEWKWN FRPWE Y+ADLSIDLKKHH+P TF DK+A WTVK+
Sbjct: 93  MIVSYWGMPPANLTKKDGSEWKWNSFRPWETYKADLSIDLKKHHSPVTFMDKLAYWTVKA 152

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+ FQ RYGCRAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIK LLEEAENE
Sbjct: 153 LRYPTDILFQNRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKTLLEEAENE 212

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEV++PKWYERALV AVQGVFFN YFLGYLISP+FAHR+VGYLEEEAIHSYTE
Sbjct: 213 RMHLMTFMEVSQPKWYERALVVAVQGVFFNTYFLGYLISPRFAHRVVGYLEEEAIHSYTE 272

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELDKGNI+NVPAPAIA DYW+LPP+STL+DVV+VVRADEAHHRDVNH+ASDIH QG 
Sbjct: 273 FLKELDKGNIQNVPAPAIAVDYWQLPPDSTLRDVVMVVRADEAHHRDVNHFASDIHDQGY 332

Query: 241 QLRESPAPLGYH 252
           +L+ESPAPLGYH
Sbjct: 333 ELKESPAPLGYH 344


>gi|52421172|dbj|BAD51467.1| alternative oxidase [Philodendron bipinnatifidum]
          Length = 345

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/251 (82%), Positives = 231/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYW V   +V  + GSEW+W CFRPWEAYEADLSIDLKKHHAPTTF DKMA  TV++L
Sbjct: 95  VVSYWDVAPSRVTNEGGSEWRWACFRPWEAYEADLSIDLKKHHAPTTFLDKMAFRTVRAL 154

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENER
Sbjct: 155 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENER 214

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 215 MHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 274

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D+G I+NVPAPAIA DYWRLP  STL+DVV+V+RADEAHHRDVNH+ASDIHYQG +
Sbjct: 275 LKDIDRGAIKNVPAPAIALDYWRLPQGSTLRDVVMVIRADEAHHRDVNHFASDIHYQGHE 334

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 335 LKAAPAPLGYH 345


>gi|12583703|dbj|BAB21500.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/251 (82%), Positives = 231/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGVEAPK+ K+DG+ W+W CFRPWE Y+ D  I+LKKHH P T  DK+A +TVK+L
Sbjct: 103 VVSYWGVEAPKLTKEDGTVWRWTCFRPWETYKPDTDIELKKHHVPVTLLDKVAFFTVKAL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 163 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV+KP+WYERALVFAVQGVFFNAYFL YL SPK AHR+VGYLEEEAIHSY+EF
Sbjct: 223 MHLMTFMEVSKPRWYERALVFAVQGVFFNAYFLTYLASPKLAHRIVGYLEEEAIHSYSEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           L ELDKGNIENVPAPAIA DYW++PP+STL+DVV+VVRADEAHHRDVNHYASDIHY+G +
Sbjct: 283 LNELDKGNIENVPAPAIAIDYWQMPPDSTLRDVVMVVRADEAHHRDVNHYASDIHYKGLE 342

Query: 242 LRESPAPLGYH 252
           L+E+ APL YH
Sbjct: 343 LKEAAAPLDYH 353


>gi|2696032|dbj|BAA23803.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/251 (82%), Positives = 230/251 (91%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGVEAPK+ K+DG+ W+W CFRPWE Y+ D  I+LKKHH P T  DK+A +TVK+L
Sbjct: 103 VVSYWGVEAPKLTKEDGTVWRWTCFRPWETYKPDTDIELKKHHVPVTLLDKVAFFTVKAL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 163 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV+KP+WYERALVFAVQGVFFNAYFL YL SPK AHR+VGYLEEEAIHSY+EF
Sbjct: 223 MHLMTFMEVSKPRWYERALVFAVQGVFFNAYFLTYLASPKLAHRIVGYLEEEAIHSYSEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           L ELDKGNIENVPAPAIA DYW++PP+STL+DVV+VVRADEA HRDVNHYASDIHY+G +
Sbjct: 283 LNELDKGNIENVPAPAIAIDYWQMPPDSTLRDVVMVVRADEALHRDVNHYASDIHYKGLE 342

Query: 242 LRESPAPLGYH 252
           L+E+ APL YH
Sbjct: 343 LKEAAAPLDYH 353


>gi|308153046|dbj|BAJ22112.1| alternative oxidase 1e [Arum maculatum]
          Length = 343

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 205/251 (81%), Positives = 232/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 93  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKAL 152

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENER
Sbjct: 153 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENER 212

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYF+GYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 213 MHLMTFMEVAQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEF 272

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G I+N PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 273 LKDIDSGAIQNTPAPAIALDYWRLPQGSTLRDVVAVVRADEAHHRDVNHFASDVHYQGHQ 332

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 333 LKAAPAPLGYH 343


>gi|323575420|dbj|BAJ78238.1| alternative oxidase 1g [Arum maculatum]
          Length = 343

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/251 (80%), Positives = 232/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 93  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKAL 152

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENER
Sbjct: 153 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENER 212

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYF+GYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 213 MHLMTFMEVAQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEF 272

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQG +
Sbjct: 273 LKDIDSGAIQDTPAPAIALDYWRLPQGSTLRDVVAVVRADEAHHRDVNHFASDVHYQGLE 332

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 333 LKTTPAPLGYH 343


>gi|224228411|dbj|BAH23673.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/251 (81%), Positives = 231/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+KDDGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+L
Sbjct: 96  VVSYWGVPPSRVSKDDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKAL 155

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENER
Sbjct: 156 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENER 215

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYF+GYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 216 MHLMTFMEVAQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEF 275

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQG Q
Sbjct: 276 LKDIDSGAIQDTPAPAIALDYWRLPQGSTLRDVVAVVRADEAHHRDVNHFASDVHYQGHQ 335

Query: 242 LRESPAPLGYH 252
           L+ +PA LGYH
Sbjct: 336 LKAAPALLGYH 346


>gi|291245408|gb|ADD84881.1| mitochondrial AOX1A [Citrullus lanatus]
          Length = 315

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/232 (89%), Positives = 218/232 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+ADL+IDL KHH PTTF DK+A WTVKSL
Sbjct: 78  IASYWGVEPSKITKEDGSEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDKIAYWTVKSL 137

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 138 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 197

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFF+AYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 198 MHLMTFMEVAKPKWYERALVITVQGVFFSAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 257

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+AS
Sbjct: 258 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFAS 309


>gi|52421168|dbj|BAD51465.1| alternative oxidase [Dracunculus vulgaris]
          Length = 338

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/251 (80%), Positives = 231/251 (92%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL TVK+L
Sbjct: 88  VVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALCTVKAL 147

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG++LH KSLRRFEHSGGWI+ALLEEAENER
Sbjct: 148 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVVLHLKSLRRFEHSGGWIRALLEEAENER 207

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 208 MHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 267

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+++ G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQG +
Sbjct: 268 LKDIESGVIQDSPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQGLE 327

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 328 LKTTPAPLGYH 338


>gi|162462512|ref|NP_001105180.1| alternative oxidase1 [Zea mays]
 gi|25989199|gb|AAL27796.1| alternative oxidase AOX2 precursor [Zea mays]
 gi|39984776|gb|AAR36136.1| alternative oxidase 1a [Zea mays]
 gi|194707372|gb|ACF87770.1| unknown [Zea mays]
 gi|414585627|tpg|DAA36198.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/253 (81%), Positives = 227/253 (89%), Gaps = 1/253 (0%)

Query: 1   MIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           +I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD SIDL +HH P T  DK+A WTVK
Sbjct: 77  VINSYWGIEQNNKLARDDGTEWKWTCFRPWETYTADTSIDLTRHHEPKTLMDKVAYWTVK 136

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           SLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAEN
Sbjct: 137 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAEN 196

Query: 120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
           ERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYT
Sbjct: 197 ERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 256

Query: 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           E+LK+L+ G IENVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASDIH QG
Sbjct: 257 EYLKDLEAGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHCQG 316

Query: 240 RQLRESPAPLGYH 252
            QL++SPAP+GYH
Sbjct: 317 MQLKQSPAPIGYH 329


>gi|242077034|ref|XP_002448453.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
 gi|241939636|gb|EES12781.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
          Length = 331

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 227/253 (89%), Gaps = 1/253 (0%)

Query: 1   MIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           +I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD SIDL +HH P T  DK+A WTVK
Sbjct: 79  VINSYWGIEQNNKLVRDDGTEWKWTCFRPWETYTADTSIDLTRHHEPKTLMDKIAYWTVK 138

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           SLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAEN
Sbjct: 139 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAEN 198

Query: 120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
           ERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYT
Sbjct: 199 ERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 258

Query: 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           E+LK+L+ G IENVPAP+IA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASDIH QG
Sbjct: 259 EYLKDLEAGKIENVPAPSIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHCQG 318

Query: 240 RQLRESPAPLGYH 252
            QL++SPAP+GYH
Sbjct: 319 MQLKQSPAPIGYH 331


>gi|19912725|dbj|BAB88645.1| alternative oxidase [Triticum aestivum]
          Length = 328

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/252 (79%), Positives = 228/252 (90%), Gaps = 1/252 (0%)

Query: 2   IVSYWGV-EAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           I SYWG+ ++ K+ ++DG+EWKW+CFRPWE Y AD SIDL KHH P T  DK+A +TVKS
Sbjct: 77  ISSYWGIDQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKS 136

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENE
Sbjct: 137 LRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENE 196

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVA+P+WYERALV AVQGVFFNAYF GYLISPKFAHR+VGYLEEEA+HSYTE
Sbjct: 197 RMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYTE 256

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK+LD G I+NVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASD++YQG 
Sbjct: 257 FLKDLDDGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDVYYQGM 316

Query: 241 QLRESPAPLGYH 252
           QL+ +PAP+GYH
Sbjct: 317 QLKATPAPIGYH 328


>gi|21216|emb|CAA78823.1| salicylic acid-inducible alternative oxidase [Typhonium venosum]
          Length = 349

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/251 (80%), Positives = 227/251 (90%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYW V   KV+K+DGSEW+W CFRPWE Y+ADLSIDL KHH PTT  DK+AL TVK+L
Sbjct: 99  VVSYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKAL 158

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWI+ALLEEAENER
Sbjct: 159 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENER 218

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 219 MHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 278

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQ  +
Sbjct: 279 LKDIDNGAIQDCPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLE 338

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 339 LKTTPAPLGYH 349


>gi|113982|sp|P22185.1|AOX1_TYPVN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|170165|gb|AAA34048.1| alternative oxidase protein [Typhonium venosum]
          Length = 349

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/251 (80%), Positives = 227/251 (90%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYW V   KV+K+DGSEW+W CFRPWE Y+ADLSIDL KHH PTT  DK+AL TVK+L
Sbjct: 99  VVSYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKAL 158

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWI+ALLEEAENER
Sbjct: 159 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENER 218

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 219 MHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 278

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQ  +
Sbjct: 279 LKDIDSGAIQDCPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLE 338

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 339 LKTTPAPLGYH 349


>gi|195637742|gb|ACG38339.1| transposon protein [Zea mays]
          Length = 329

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 227/253 (89%), Gaps = 1/253 (0%)

Query: 1   MIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           +I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD SIDL +H+ P T  DK+A WTVK
Sbjct: 77  VINSYWGIEQNNKLARDDGTEWKWTCFRPWETYTADTSIDLTRHYEPKTLMDKVAYWTVK 136

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           SLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAEN
Sbjct: 137 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAEN 196

Query: 120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
           ERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYT
Sbjct: 197 ERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 256

Query: 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           E+LK+L+ G IENVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASDIH QG
Sbjct: 257 EYLKDLEAGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHCQG 316

Query: 240 RQLRESPAPLGYH 252
            QL++SPAP+GYH
Sbjct: 317 MQLKQSPAPIGYH 329


>gi|115460316|ref|NP_001053758.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|3218544|dbj|BAA28772.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218546|dbj|BAA28773.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|6467126|dbj|BAA86963.1| alternative oxidase [Oryza sativa (japonica cultivar-group)]
 gi|38345773|emb|CAD41813.2| OSJNBa0083N12.11 [Oryza sativa Japonica Group]
 gi|113565329|dbj|BAF15672.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|116310914|emb|CAH67852.1| B0403H10-OSIGBa0105A11.4 [Oryza sativa Indica Group]
 gi|125549592|gb|EAY95414.1| hypothetical protein OsI_17254 [Oryza sativa Indica Group]
 gi|125591517|gb|EAZ31867.1| hypothetical protein OsJ_16032 [Oryza sativa Japonica Group]
 gi|215693779|dbj|BAG88978.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/253 (79%), Positives = 228/253 (90%), Gaps = 1/253 (0%)

Query: 1   MIVSYWGVE-APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           ++ SYWG+E + K+ ++DG+EWKW+CFRPWE Y AD SIDL KHH P T  DK+A WTVK
Sbjct: 80  VVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPKTLLDKIAYWTVK 139

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           SLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ LLEEAEN
Sbjct: 140 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRTLLEEAEN 199

Query: 120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
           ERMHLMTFMEVA PKWYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYT
Sbjct: 200 ERMHLMTFMEVANPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 259

Query: 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           EFLK+L+ G I+NVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASDIHYQG
Sbjct: 260 EFLKDLEAGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHYQG 319

Query: 240 RQLRESPAPLGYH 252
            +L+++PAP+GYH
Sbjct: 320 MELKQTPAPIGYH 332


>gi|51860695|gb|AAU11467.1| mitochondrial alternative oxidase 1 [Saccharum officinarum]
          Length = 331

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/253 (80%), Positives = 226/253 (89%), Gaps = 1/253 (0%)

Query: 1   MIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           +I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD SIDL +HH   T  DK+A WTVK
Sbjct: 79  VINSYWGIEQNNKLVRDDGTEWKWTCFRPWETYTADTSIDLTRHHELKTLMDKIAYWTVK 138

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           SLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAEN
Sbjct: 139 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAEN 198

Query: 120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
           ERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYT
Sbjct: 199 ERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 258

Query: 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           E+LK+++ G IENVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASDIH QG
Sbjct: 259 EYLKDVEAGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHCQG 318

Query: 240 RQLRESPAPLGYH 252
            QL++SPAP+GYH
Sbjct: 319 MQLKQSPAPIGYH 331


>gi|330690264|gb|AEC33278.1| mitochondrial alternative oxidase 1 [Hordeum vulgare subsp.
           spontaneum]
          Length = 328

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/252 (78%), Positives = 226/252 (89%), Gaps = 1/252 (0%)

Query: 2   IVSYWGVEA-PKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           I SYWG++   K+ +DDG+EWKW+CFRPWE Y AD SIDL  HH P T  DK+A +TVKS
Sbjct: 77  ISSYWGIDQLRKLARDDGTEWKWSCFRPWETYTADTSIDLTTHHMPNTMPDKLAYFTVKS 136

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENE
Sbjct: 137 LRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENE 196

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVA+P+WYERALV  VQGVFFNAYF+GYL+SPKFAHR+VGYLEEEA+HSYTE
Sbjct: 197 RMHLMTFMEVAQPRWYERALVIVVQGVFFNAYFIGYLLSPKFAHRVVGYLEEEAVHSYTE 256

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK+LD G IENVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASD++YQG 
Sbjct: 257 FLKDLDDGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDVYYQGM 316

Query: 241 QLRESPAPLGYH 252
           +L+ +PAP+GYH
Sbjct: 317 KLKTAPAPIGYH 328


>gi|357165610|ref|XP_003580438.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 333

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/253 (78%), Positives = 229/253 (90%), Gaps = 1/253 (0%)

Query: 1   MIVSYWGVE-APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           ++ SYWG+E A K+ ++DG+EWKW+CFRPWE Y AD SIDL KHH P T  DK+A WTVK
Sbjct: 81  VVNSYWGIEQAKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPKTMLDKIAYWTVK 140

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           SLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAEN
Sbjct: 141 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAEN 200

Query: 120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
           ERMHLMTFMEVA+P+WYERALV AVQGVFFNAYF GYLISPKFAHR+VGYLEEEA+HSYT
Sbjct: 201 ERMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYT 260

Query: 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           EFLK+L+ G I++VPAP+IA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASD++YQG
Sbjct: 261 EFLKDLEAGKIDDVPAPSIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDVYYQG 320

Query: 240 RQLRESPAPLGYH 252
            +L+ +PAP+GYH
Sbjct: 321 MELKATPAPIGYH 333


>gi|5802557|gb|AAD51707.1| alternative oxidase [Triticum aestivum]
          Length = 274

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/252 (79%), Positives = 227/252 (90%), Gaps = 1/252 (0%)

Query: 2   IVSYWGVE-APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           I SYWG+E + K+ ++DG+EWKW+CFRPWE Y AD SID  KHH P T  DK+A +TVKS
Sbjct: 23  ISSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDPTKHHVPNTMLDKIAYYTVKS 82

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENE
Sbjct: 83  LRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENE 142

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVA+P+WYERALV AVQGVFFNAYF GYLISPKFAHR+VGYLEEEA+HSYTE
Sbjct: 143 RMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYTE 202

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK+LD G I+NVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASD++YQG 
Sbjct: 203 FLKDLDDGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDVYYQGM 262

Query: 241 QLRESPAPLGYH 252
           QL+ +PAP+GYH
Sbjct: 263 QLKATPAPIGYH 274


>gi|357484587|ref|XP_003612581.1| Alternative oxidase [Medicago truncatula]
 gi|355513916|gb|AES95539.1| Alternative oxidase [Medicago truncatula]
          Length = 262

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/225 (89%), Positives = 213/225 (94%)

Query: 28  PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 87
           PWE Y+AD++IDL KHH PTTF DKMA WTVKSLRWPTD+FFQRRYGCRAMMLETVAAVP
Sbjct: 38  PWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVP 97

Query: 88  GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 147
           GMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQGV
Sbjct: 98  GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 157

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 207
           FFNAYFLGYL+SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYW+LP 
Sbjct: 158 FFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPQ 217

Query: 208 NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           NSTL+DVV VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 218 NSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 262


>gi|162462383|ref|NP_001105179.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|25989197|gb|AAL27795.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|194690594|gb|ACF79381.1| unknown [Zea mays]
 gi|194703950|gb|ACF86059.1| unknown [Zea mays]
 gi|223974129|gb|ACN31252.1| unknown [Zea mays]
 gi|238011470|gb|ACR36770.1| unknown [Zea mays]
 gi|413938400|gb|AFW72951.1| hypothetical protein ZEAMMB73_439635 [Zea mays]
          Length = 347

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/252 (78%), Positives = 226/252 (89%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV   K+   DG+EW+W+CFRPWEAY+ D +IDL +HH P    DK+A WTVK 
Sbjct: 96  VVSSYWGVAPSKLMNKDGAEWRWSCFRPWEAYKPDTTIDLNRHHEPKVLLDKIAYWTVKL 155

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENE
Sbjct: 156 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENE 215

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTE
Sbjct: 216 RMHLMTFMEVAKPKWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTE 275

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK+L+ G IENVPAPAIA DYW+LP ++TLKDVV+VVR+DEAHHRDVNH+ASDIH+QG 
Sbjct: 276 YLKDLEAGKIENVPAPAIAIDYWQLPADATLKDVVVVVRSDEAHHRDVNHFASDIHFQGM 335

Query: 241 QLRESPAPLGYH 252
           QL+E+PAP+ YH
Sbjct: 336 QLKETPAPIEYH 347


>gi|242062814|ref|XP_002452696.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
 gi|241932527|gb|EES05672.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
          Length = 346

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/252 (79%), Positives = 225/252 (89%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV   K+   DG EW+W+CFRPWEAY+ D SIDL +HH P    DK+A WTVK 
Sbjct: 95  VVSSYWGVAPSKLMSKDGVEWRWSCFRPWEAYKPDTSIDLTRHHEPKVLLDKIAYWTVKL 154

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENE
Sbjct: 155 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENE 214

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTE
Sbjct: 215 RMHLMTFMEVAKPKWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTE 274

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK+L+ G IENVPAPAIA DYW+LP ++TLKDVV+VVR+DEAHHRDVNH+ASDIH+QG 
Sbjct: 275 YLKDLEAGKIENVPAPAIAIDYWQLPADATLKDVVVVVRSDEAHHRDVNHFASDIHFQGM 334

Query: 241 QLRESPAPLGYH 252
           QL+E+PAP+ YH
Sbjct: 335 QLKETPAPIEYH 346


>gi|115448119|ref|NP_001047839.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|16902306|dbj|BAB71944.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|16902308|dbj|BAB71945.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052670|dbj|BAD07517.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052978|dbj|BAD07888.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|113537370|dbj|BAF09753.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|125540792|gb|EAY87187.1| hypothetical protein OsI_08589 [Oryza sativa Indica Group]
          Length = 345

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 220/249 (88%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+EA K+   DG EWKW+CFRPWE Y  D +IDLKKHH P    DK+A WTVK+LR 
Sbjct: 97  SYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRV 156

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENERMH
Sbjct: 157 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMH 216

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEVAKP+WYERALV AVQGVFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 217 LMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLK 276

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +++ G IENVPAP IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L+
Sbjct: 277 DIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLK 336

Query: 244 ESPAPLGYH 252
           + PAPL YH
Sbjct: 337 DIPAPLDYH 345


>gi|224074535|ref|XP_002304386.1| predicted protein [Populus trichocarpa]
 gi|222841818|gb|EEE79365.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 224/251 (89%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV  PK+ K+DG+ WKWNCFRPWE+Y+ D+SID+KKHH P T  DK A WTV+ L
Sbjct: 3   IVSYWGVTPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVL 62

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           ++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 63  KYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 122

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+E+AKP+WYERALVFAVQG FFNAYFL YL SPK AHR+VGYLEEEA++SY+EF
Sbjct: 123 MHLMTFVEIAKPQWYERALVFAVQGAFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEF 182

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           L++LD GN ENVPAPAIA DYWRLPPNSTL+DVV V+RADEAHHRD+NHYASDI  QG++
Sbjct: 183 LEDLDNGNFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDLNHYASDIQCQGQE 242

Query: 242 LRESPAPLGYH 252
           L+ +PAP+GYH
Sbjct: 243 LKHTPAPIGYH 253


>gi|125539183|gb|EAY85578.1| hypothetical protein OsI_06950 [Oryza sativa Indica Group]
          Length = 339

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/249 (77%), Positives = 220/249 (88%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWGV   ++ K+DG+ WKW+CFRPW+ YEAD++IDL KHH P T  DK+A WTVKSLRW
Sbjct: 91  SYWGVAPTRLVKEDGTVWKWSCFRPWDTYEADVAIDLTKHHNPATLGDKVARWTVKSLRW 150

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           P DLFFQRRYGCRAMMLETVAAVPGMV G +LH +SLRRFEHSGGWI+ALLEEAENERMH
Sbjct: 151 PVDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMH 210

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEV++P+WYERALV AVQG FFNAY   YL+SP+FAHR+VGYLEEEA+HSYTEFL+
Sbjct: 211 LMTFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLR 270

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +LD G I++VPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG  LR
Sbjct: 271 DLDAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALR 330

Query: 244 ESPAPLGYH 252
           E  APLGYH
Sbjct: 331 EVAAPLGYH 339


>gi|50251730|dbj|BAD27650.1| putative alternative oxidase 1 [Oryza sativa Japonica Group]
          Length = 339

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/249 (77%), Positives = 220/249 (88%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWGV   ++ K+DG+ WKW+CFRPW+ YEAD++IDL KHH P T  DK+A WTVKSLRW
Sbjct: 91  SYWGVAPTRLVKEDGTVWKWSCFRPWDTYEADVAIDLTKHHNPATLGDKVARWTVKSLRW 150

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           P DLFFQRRYGCRAMMLETVAAVPGMV G +LH +SLRRFEHSGGWI+ALLEEAENERMH
Sbjct: 151 PVDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMH 210

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEV++P+WYERALV AVQG FFNAY   YL+SP+FAHR+VGYLEEEA+HSYTEFL+
Sbjct: 211 LMTFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLR 270

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +LD G I++VPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG  LR
Sbjct: 271 DLDAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALR 330

Query: 244 ESPAPLGYH 252
           E  APLGYH
Sbjct: 331 EVAAPLGYH 339


>gi|225427478|ref|XP_002262811.1| PREDICTED: alternative oxidase 1a, mitochondrial [Vitis vinifera]
 gi|296088484|emb|CBI37475.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/251 (78%), Positives = 224/251 (89%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K+ K+DG+EWKW+CF+P EAY+AD+SIDL KHH P  +++K+A W VK L
Sbjct: 70  VVSYWGVAPVKLTKEDGTEWKWSCFKPSEAYKADVSIDLGKHHVPRVWTEKVAYWGVKML 129

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENER
Sbjct: 130 RLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENER 189

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP+WYERALVFAVQG+F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF
Sbjct: 190 MHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEF 249

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           +KELD GNI NVPAPAIA DYWRL P+STL+DVV+VVRADEAHHRDVNHYASDIHYQG Q
Sbjct: 250 IKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVVRADEAHHRDVNHYASDIHYQGLQ 309

Query: 242 LRESPAPLGYH 252
           L+E PAPLGYH
Sbjct: 310 LKEFPAPLGYH 320


>gi|82468807|gb|ABB76768.1| alternative oxidase 1a [Solanum tuberosum]
          Length = 355

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/241 (83%), Positives = 212/241 (87%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K  K DG+EWKWNCFRPWE YEAD+SIDL KHHAP TF DK A WTVK L
Sbjct: 106 VVSYWGVPPSKATKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKVL 165

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 166 RFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 225

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP  YERALVF VQGVFFNAYF  YLISPK AHR+VGYLEEEA+HSYTEF
Sbjct: 226 MHLMTFMEVAKPNVYERALVFTVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEF 285

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELD GNIENVPAPAIA DYWRLP ++TL+DVVLVVRADEAHHRDVNHYAS   Y+   
Sbjct: 286 LKELDNGNIENVPAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASVRTYKADD 345

Query: 242 L 242
           L
Sbjct: 346 L 346


>gi|357137162|ref|XP_003570170.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 343

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/252 (78%), Positives = 227/252 (90%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+   K+   DG+EWKW+CFRPWEAY +D +IDLKKHH P    DK+A WTVKS
Sbjct: 92  VVSSYWGIVPAKLVNKDGAEWKWSCFRPWEAYTSDTTIDLKKHHEPKVLLDKIAYWTVKS 151

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENE
Sbjct: 152 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENE 211

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVA PKWYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEA+HSYTE
Sbjct: 212 RMHLMTFMEVAGPKWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAVHSYTE 271

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FL++++ G I+NVPAP IA DYWRLPP++TL+DVV+VVRADEAHHRDVNH+ASDIH+QG 
Sbjct: 272 FLRDIEAGKIDNVPAPRIAIDYWRLPPDATLRDVVVVVRADEAHHRDVNHFASDIHFQGL 331

Query: 241 QLRESPAPLGYH 252
           +L ++PAPLGYH
Sbjct: 332 ELNKTPAPLGYH 343


>gi|111607217|dbj|BAF02775.1| alternative oxidase [Lactuca sativa]
          Length = 228

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/228 (86%), Positives = 214/228 (93%)

Query: 25  CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 84
           CFRPWE Y+ADLSIDLKKHH PTTF DK+A WTVKSLR+PTD+FFQ+RYGCRAMMLETVA
Sbjct: 1   CFRPWETYQADLSIDLKKHHTPTTFLDKLAYWTVKSLRFPTDVFFQKRYGCRAMMLETVA 60

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
           AVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEV+KP+WYERALVF V
Sbjct: 61  AVPGMVGGMLLHCKSLRRFEPSGGWIKALLEEAENERMHLMTFMEVSKPRWYERALVFTV 120

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 204
           QGVFFNAYFL YL SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENV APAIA DYWR
Sbjct: 121 QGVFFNAYFLAYLASPKLAHRIVGYLEEEAIHSYTEFLKELDKGTIENVKAPAIAIDYWR 180

Query: 205 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           LP +STL+DVV+VVRADEAHHRDVNH+ASDIHYQG +L++SPAP+GYH
Sbjct: 181 LPADSTLRDVVMVVRADEAHHRDVNHFASDIHYQGLELKDSPAPIGYH 228


>gi|242077038|ref|XP_002448455.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
 gi|241939638|gb|EES12783.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
          Length = 332

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 223/251 (88%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG+EAPK+ K+DG+EWKW  FRPW+AY +D SID+KKHHAPTT  DK A   VKSL
Sbjct: 82  IVSYWGIEAPKLVKEDGTEWKWTSFRPWDAYTSDTSIDVKKHHAPTTLPDKAAYLIVKSL 141

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENER
Sbjct: 142 RVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENER 201

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +PKW+ERALV A QGVFFNAYF+GYL+SPKFAHR+VGYLEEEA++SYTE+
Sbjct: 202 MHLMTFLEVTQPKWWERALVLATQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAVYSYTEY 261

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 262 LKDLEAGIIENTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVNHFASDIHYQGMK 321

Query: 242 LRESPAPLGYH 252
           LR++PAPLGYH
Sbjct: 322 LRDTPAPLGYH 332


>gi|19912727|dbj|BAB88646.1| alternative oxidase [Triticum aestivum]
          Length = 347

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/249 (78%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+   K+   DG+EWKW+CFRPWEAY +D +IDL KHH P    DK+A WTVKSLR 
Sbjct: 99  SYWGIVPAKLVNKDGAEWKWSCFRPWEAYTSDTTIDLSKHHKPKVLLDKIAYWTVKSLRV 158

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLH +SLRRFE SGGWI+ALLEEAENERMH
Sbjct: 159 PTDIFFQRRYGCRAMMLETVAAVPGMVDGMLLHLRSLRRFEQSGGWIRALLEEAENERMH 218

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEVA PKWYERALV AVQGVFFNAYFLGY++SPKFAHR+VGYLEEEAIHSYTEFL+
Sbjct: 219 LMTFMEVANPKWYERALVLAVQGVFFNAYFLGYIVSPKFAHRVVGYLEEEAIHSYTEFLR 278

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +L+ G IENVPAP IA DYWRLP ++ LKDVV VVRADEAHHRDVNH+A+DIH+QG +L 
Sbjct: 279 DLEAGRIENVPAPRIAIDYWRLPADARLKDVVTVVRADEAHHRDVNHFAADIHFQGLELN 338

Query: 244 ESPAPLGYH 252
           ++PAPLGYH
Sbjct: 339 KTPAPLGYH 347


>gi|6967043|emb|CAB72441.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 294

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 223/251 (88%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV  PK+ K+DG+ WKWNCFRPWE+Y+ D+SID+KKHH P T  DK A WTV+ L
Sbjct: 44  IVSYWGVSPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVL 103

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           ++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KSLRRFE SGGWIKALLEEAENER
Sbjct: 104 KYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHFKSLRRFEQSGGWIKALLEEAENER 163

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+E+AKP+WYERALVFAVQGVFFNAYFL YL SPK AHR+VGYLEEEA++SY+EF
Sbjct: 164 MHLMTFVEIAKPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEF 223

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           L++LD  + ENVPAPAIA DYWRLPPNSTL+DVV V+RADEAHHRD+NHYASDI  QG++
Sbjct: 224 LEDLDNCSFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDLNHYASDIQCQGQE 283

Query: 242 LRESPAPLGYH 252
           LR +PAP+GYH
Sbjct: 284 LRYTPAPIGYH 294


>gi|171198301|gb|ACB45425.1| mitochondrial alternative oxidase 2 [Vitis vinifera]
          Length = 320

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 188/249 (75%), Positives = 220/249 (88%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG++ PK+ ++DGS W WNCF PWE Y AD +IDL KHH P TF+DK+A  TVK LR 
Sbjct: 72  SYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPKTFADKVAYRTVKLLRI 131

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGW+KALLEEAENERMH
Sbjct: 132 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAENERMH 191

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ +PKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTEFLK
Sbjct: 192 LMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSYTEFLK 251

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           ++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+QG++L 
Sbjct: 252 DIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQGKKLN 311

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 312 EAPAPIGYH 320


>gi|51860701|gb|AAU11470.1| mitochondrial alternative oxidase 1d [Saccharum officinarum]
          Length = 286

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/251 (76%), Positives = 223/251 (88%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG+E PK+ K+DG+EWKW CFRPW+AY +D SID+KKHHAPTT  DK A   VKSL
Sbjct: 36  IVSYWGIEPPKLVKEDGTEWKWPCFRPWDAYTSDTSIDVKKHHAPTTLPDKAAYLIVKSL 95

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGW++ALLEEAENER
Sbjct: 96  RVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWVRALLEEAENER 155

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +P+W+ERALV A QGVFFNAYF+GYL+SPKFAHR+VGYLEEEA+HSYTE+
Sbjct: 156 MHLMTFLEVTQPRWWERALVLATQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAVHSYTEY 215

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 216 LKDLEAGIIENSPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVNHFASDIHYQGMK 275

Query: 242 LRESPAPLGYH 252
           LR++PAPLGYH
Sbjct: 276 LRDTPAPLGYH 286


>gi|225448273|ref|XP_002274470.1| PREDICTED: alternative oxidase, mitochondrial [Vitis vinifera]
          Length = 320

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 188/249 (75%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG++ PK+ ++DGS W WNCF PWE Y AD +IDL KHH P TF DK+A  TVK LR 
Sbjct: 72  SYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPKTFVDKVAYRTVKLLRI 131

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGW+KALLEEAENERMH
Sbjct: 132 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAENERMH 191

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ +PKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTEFLK
Sbjct: 192 LMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSYTEFLK 251

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           ++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+QG++L 
Sbjct: 252 DIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQGKKLN 311

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 312 EAPAPIGYH 320


>gi|283488059|gb|ADB24723.1| mitochondrial alternative oxidase 2a [Daucus carota]
 gi|283488061|gb|ADB24724.1| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 338

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 189/252 (75%), Positives = 222/252 (88%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV  P++ K+DG+EW WNCF PWE Y+ADLSIDL KHH P TF DK+A  TVK 
Sbjct: 87  VVSSYWGVARPRITKEDGTEWPWNCFMPWETYQADLSIDLGKHHVPKTFLDKVAYKTVKL 146

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENE
Sbjct: 147 LRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENE 206

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KPKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE
Sbjct: 207 RMHLMTMVELVKPKWYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYTE 266

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK+++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 267 YLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQGK 326

Query: 241 QLRESPAPLGYH 252
           +LR++PAPLGYH
Sbjct: 327 ELRDAPAPLGYH 338


>gi|89474873|gb|AAP33163.2| mitochondrial alternative oxidase 2 [Cucumis sativus]
          Length = 346

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 221/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A   VK 
Sbjct: 95  LVSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHQPKTFLDKVAYRVVKL 154

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 155 LRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 214

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE
Sbjct: 215 RMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTE 274

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++++G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 275 YLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGK 334

Query: 241 QLRESPAPLGYH 252
           +LRES APLGYH
Sbjct: 335 ELRESAAPLGYH 346


>gi|291245406|gb|ADD84880.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A   VK 
Sbjct: 98  LVSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKL 157

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 158 LRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 217

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE
Sbjct: 218 RMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTE 277

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++D+G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 278 YLKDIDEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGK 337

Query: 241 QLRESPAPLGYH 252
           +LRES  PLGYH
Sbjct: 338 ELRESAVPLGYH 349


>gi|449438777|ref|XP_004137164.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
 gi|449532455|ref|XP_004173196.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
          Length = 346

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 221/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A   VK 
Sbjct: 95  LVSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHQPKTFLDKVAYRVVKL 154

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 155 LRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 214

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE
Sbjct: 215 RMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTE 274

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++++G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 275 YLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGK 334

Query: 241 QLRESPAPLGYH 252
           +LRES APLGYH
Sbjct: 335 ELRESAAPLGYH 346


>gi|225571961|gb|ABZ81229.2| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 329

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/252 (75%), Positives = 222/252 (88%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV  P++ K+DG+EW WNCF PWE Y+ADLSIDL KHH P TF DK+A  TVK 
Sbjct: 78  VVSSYWGVARPRITKEDGTEWPWNCFMPWETYQADLSIDLGKHHVPKTFLDKVAYKTVKL 137

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENE
Sbjct: 138 LRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENE 197

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KPKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE
Sbjct: 198 RMHLMTMVELVKPKWYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYTE 257

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK+++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 258 YLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQGK 317

Query: 241 QLRESPAPLGYH 252
           +LR++PAPLGYH
Sbjct: 318 ELRDAPAPLGYH 329


>gi|344190170|gb|AEM97867.1| mitochondrial alternative oxidase 1A [Corylus heterophylla]
          Length = 326

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/252 (74%), Positives = 223/252 (88%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV  P++ ++DG+EW WNCF PWE+Y+ADLSIDL+KHH P  F DK+A  TVK 
Sbjct: 75  VVSSYWGVSRPRIKREDGTEWPWNCFMPWESYKADLSIDLQKHHVPKVFLDKVAYRTVKL 134

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGWIKALLEEAENE
Sbjct: 135 LRIPTDIFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWIKALLEEAENE 194

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KPKWYER LV  VQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTE
Sbjct: 195 RMHLMTMVELVKPKWYERLLVLTVQGVFFNAYFIAYLLSPKLAHRIVGYLEEEAIHSYTE 254

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++  G IENV APAIA DYW+LP ++TL+DVV V+RADEAHHRDVNH+A+DIH+QG+
Sbjct: 255 YLKDITSGAIENVQAPAIAIDYWKLPKDATLEDVVTVIRADEAHHRDVNHFAADIHFQGK 314

Query: 241 QLRESPAPLGYH 252
           +LR+SPAP+GYH
Sbjct: 315 ELRDSPAPVGYH 326


>gi|225571963|gb|ABZ81230.2| mitochondrial alternative oxidase 2b [Daucus carota]
          Length = 319

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 187/251 (74%), Positives = 223/251 (88%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           + SYWGV  PKV ++DGS+W WNCF PWE Y+AD+SIDL KHH P  F DKMA  TVK L
Sbjct: 69  VTSYWGVARPKVKREDGSDWPWNCFMPWETYQADVSIDLNKHHKPKGFLDKMAYKTVKLL 128

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTD+ F+RRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENER
Sbjct: 129 RLPTDILFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENER 188

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMT +E+ +PKW+ER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+
Sbjct: 189 MHLMTMVELVQPKWHERLLVLAVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIHSYTEY 248

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D+G IENVPAPAI+ DYWRLP ++ L+DV+LV+RADEAHHRDVNH+ASDIH++G++
Sbjct: 249 LKDIDRGLIENVPAPAISIDYWRLPQDAKLRDVILVIRADEAHHRDVNHFASDIHFEGKE 308

Query: 242 LRESPAPLGYH 252
           LR++PAPLGYH
Sbjct: 309 LRDAPAPLGYH 319


>gi|51860699|gb|AAU11469.1| mitochondrial alternative oxidase 1c [Saccharum officinarum]
          Length = 239

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/236 (82%), Positives = 216/236 (91%)

Query: 17  DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR 76
           DG EW+W+CFRPWEAY+ D SIDL +HH P    DK+A WTVK LR PTD+FFQRRYGCR
Sbjct: 4   DGVEWRWSCFRPWEAYKPDTSIDLTRHHEPKVLLDKIAYWTVKLLRVPTDIFFQRRYGCR 63

Query: 77  AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 136
           AMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVAKPKWY
Sbjct: 64  AMMLETVAAVPGMVGGMLLHLRSLRRFEPSGGWIRALLEEAENERMHLMTFMEVAKPKWY 123

Query: 137 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 196
           ERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTE+LK+L+ G IENVPAP
Sbjct: 124 ERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIENVPAP 183

Query: 197 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           AIA DYW+LP ++TLKDVV+VVR+DEAHHRDVNH+ASDIH+QG QL+E+PAPLGYH
Sbjct: 184 AIAIDYWQLPADATLKDVVIVVRSDEAHHRDVNHFASDIHFQGMQLKETPAPLGYH 239


>gi|345505255|gb|AEN99850.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A   VK 
Sbjct: 98  LVSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKL 157

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSG WIKALLEEAENE
Sbjct: 158 LRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGVWIKALLEEAENE 217

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE
Sbjct: 218 RMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTE 277

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++D+G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 278 YLKDIDEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGK 337

Query: 241 QLRESPAPLGYH 252
           +LRES APLGYH
Sbjct: 338 ELRESAAPLGYH 349


>gi|488826|emb|CAA55892.1| alternative oxidase [Mangifera indica]
          Length = 274

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           M+ +YWG+  PK+ ++DGSEW WNCF PWE Y +DLSIDLKKHH P TF DK A  TVK 
Sbjct: 23  MVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDKFAYRTVKI 82

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+ E SGGWIKALLEEAENE
Sbjct: 83  LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENE 142

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV AVQGVFFN++F+ Y++SPK AHR+VGYLEEEAIHSYTE
Sbjct: 143 RMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTE 202

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++D G I+N+PAPAIA DYWRLP ++TLKDV+ VVRADEAHHRDVNH+ASD+  QG+
Sbjct: 203 YLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFASDVQVQGK 262

Query: 241 QLRESPAPLGYH 252
           +LR++PAP+GYH
Sbjct: 263 ELRDAPAPVGYH 274


>gi|3915618|sp|Q40294.2|AOX1_MANIN RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
          Length = 318

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           M+ +YWG+  PK+ ++DGSEW WNCF PWE Y +DLSIDLKKHH P TF DK A  TVK 
Sbjct: 67  MVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDKFAYRTVKI 126

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+ E SGGWIKALLEEAENE
Sbjct: 127 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENE 186

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV AVQGVFFN++F+ Y++SPK AHR+VGYLEEEAIHSYTE
Sbjct: 187 RMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTE 246

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++D G I+N+PAPAIA DYWRLP ++TLKDV+ VVRADEAHHRDVNH+ASD+  QG+
Sbjct: 247 YLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFASDVQVQGK 306

Query: 241 QLRESPAPLGYH 252
           +LR++PAP+GYH
Sbjct: 307 ELRDAPAPVGYH 318


>gi|255556647|ref|XP_002519357.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
 gi|223541424|gb|EEF42974.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
          Length = 352

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/252 (73%), Positives = 222/252 (88%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV ++DGSEW WNCF PWE Y+++ +IDL KHH P TF DK+A  TVK 
Sbjct: 101 VVSSYWGIVRPKVLREDGSEWPWNCFMPWETYQSNTAIDLSKHHVPKTFLDKVAYRTVKL 160

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENE
Sbjct: 161 LRVPTDIFFRRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENE 220

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +P+WYER LV AVQGVFFNAYF+ YL+SPK AHR+ GYLEEEAIHSYTE
Sbjct: 221 RMHLMTMVELVQPRWYERLLVLAVQGVFFNAYFVLYLLSPKLAHRITGYLEEEAIHSYTE 280

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++ +G IEN+PAPAI+ DYWRLP ++TL+DV+ V+RADEAHHRDVNH+ASDIHYQG+
Sbjct: 281 FLKDIKEGKIENIPAPAISIDYWRLPKDATLEDVITVIRADEAHHRDVNHFASDIHYQGK 340

Query: 241 QLRESPAPLGYH 252
           +LRE+PAPLGYH
Sbjct: 341 ELREAPAPLGYH 352


>gi|350539127|ref|NP_001234120.1| alternative oxidase 1b [Solanum lycopersicum]
 gi|29465624|gb|AAK58483.1| alternative oxidase 1b [Solanum lycopersicum]
          Length = 318

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 221/251 (88%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV+ PK++K+DG+ WKWN FRPWE Y AD+SID++KHH PT F DK A WTV+SL
Sbjct: 68  IVSYWGVDPPKISKEDGTPWKWNSFRPWETYSADISIDVEKHHMPTNFMDKFAYWTVQSL 127

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           ++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 128 KYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 187

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+E++ PKWYERALVFAVQGVF NAYF+ YL SPK AHR+VGYLEEEA++SYTEF
Sbjct: 188 MHLMTFIELSNPKWYERALVFAVQGVFVNAYFIAYLASPKLAHRIVGYLEEEAVNSYTEF 247

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           L +++KG  EN PAPAIA DYWRLP ++TLKDVV V+RADEAHHRD+NH+ASDI  QG +
Sbjct: 248 LIDIEKGLFENSPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQCQGHE 307

Query: 242 LRESPAPLGYH 252
           L+  PAP+GYH
Sbjct: 308 LKGYPAPIGYH 318


>gi|116784421|gb|ABK23336.1| unknown [Picea sitchensis]
          Length = 400

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/248 (76%), Positives = 215/248 (86%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG    ++++ DGS W WN FRPWE Y  ++SIDLKKHH P TF+DK A WTV+++R 
Sbjct: 152 SYWGFYPTQISRQDGSPWPWNSFRPWETYTPNMSIDLKKHHVPKTFADKFAYWTVRAMRI 211

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           P DLFF++RY  R MMLETVAAVPGMVGGMLLHCKSLR+F+HS GWIKALLEEAENERMH
Sbjct: 212 PVDLFFKKRYDIRVMMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMH 271

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEV KP W+ERALVFAVQGVFFN YFL Y+ISPK AHR+VGYLEEEA++SYTEFLK
Sbjct: 272 LMTFMEVTKPNWFERALVFAVQGVFFNTYFLVYIISPKLAHRIVGYLEEEAVYSYTEFLK 331

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           ELD GNI N PAPAIA DYWRLP +STL+DVV+VVRADEAHHRDVNH+ASDIH+QGR+LR
Sbjct: 332 ELDNGNIPNGPAPAIAIDYWRLPKDSTLRDVVMVVRADEAHHRDVNHFASDIHFQGRELR 391

Query: 244 ESPAPLGY 251
           E+ APL Y
Sbjct: 392 EAAAPLDY 399


>gi|122058944|gb|ABM66368.1| mitochondrial alternative oxidase 2a [Vigna unguiculata]
          Length = 329

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+  PK+ ++DG+EW WNCF PWE Y ++LSIDL KHH P  F DK+A  TVK LR 
Sbjct: 81  SYWGISRPKIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKNFLDKVAYRTVKLLRI 140

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKAL+EEAENERMH
Sbjct: 141 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALMEEAENERMH 200

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 201 LMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 260

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 261 DIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 320

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 321 EAPAPIGYH 329


>gi|162463026|ref|NP_001105663.1| alternative oxidase AOX3 precursor [Zea mays]
 gi|25989201|gb|AAL27797.1| alternative oxidase AOX3 precursor [Zea mays]
          Length = 332

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/251 (74%), Positives = 219/251 (87%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG++ PK+ K+DG+EWKW  FRPW+AY +D SID+ KHHAPTT  DK A   VKSL
Sbjct: 82  VVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPTTLPDKAAYLIVKSL 141

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENER
Sbjct: 142 RVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENER 201

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +P+W+ERALV   QGVFFNAYFLGYL+SPKFAHR+VGYLEEEA+HSYTE+
Sbjct: 202 MHLMTFLEVTQPRWWERALVLTAQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAVHSYTEY 261

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 262 LKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVNHFASDIHYQGMK 321

Query: 242 LRESPAPLGYH 252
           L+++PAPL YH
Sbjct: 322 LKDTPAPLSYH 332


>gi|14572654|emb|CAC42836.1| putative alternative oxidase [Vigna unguiculata]
          Length = 329

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+  P++ ++DG+EW WNCF PWE Y ++LSIDL KHH P  F DK+A  TVK LR 
Sbjct: 81  SYWGISRPRIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKNFLDKVAYRTVKLLRI 140

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKAL+EEAENERMH
Sbjct: 141 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALMEEAENERMH 200

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 201 LMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 260

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 261 DIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 320

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 321 EAPAPIGYH 329


>gi|414585624|tpg|DAA36195.1| TPA: alternative oxidase [Zea mays]
          Length = 332

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 219/251 (87%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG++ PK+ K+DG+EWKW  FRPW+AY +D SID+ KHHAPTT  DK A   VKSL
Sbjct: 82  VVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPTTLPDKAAYLIVKSL 141

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENER
Sbjct: 142 RVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENER 201

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +P+W+ERALV   QGVFFNAYF+GYL+SPKFAHR+VGYLEEEA+HSYTE+
Sbjct: 202 MHLMTFLEVTQPRWWERALVLTAQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAVHSYTEY 261

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 262 LKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVNHFASDIHYQGMK 321

Query: 242 LRESPAPLGYH 252
           L+++PAPL YH
Sbjct: 322 LKDTPAPLSYH 332


>gi|147782375|emb|CAN70584.1| hypothetical protein VITISV_001908 [Vitis vinifera]
          Length = 285

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 216/251 (86%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV    + K+DGS WKW+CFRPWE Y+AD+SID++KHH P  F DK A WTV++L
Sbjct: 35  IVSYWGVPPANLTKEDGSPWKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQAL 94

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           + PT +FFQR++ C AM+LETVAAVPGMVGGMLLHC+S RRFE SGGWIKALLEEAENER
Sbjct: 95  KIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSXRRFEQSGGWIKALLEEAENER 154

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+E+AKP+WYERAJVFAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEF
Sbjct: 155 MHLMTFIELAKPQWYERAJVFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEF 214

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+LD G+ ENVPAPAIA DYWRLP  STL+DVV V+RADEAHHRDVNHYASDI  QG Q
Sbjct: 215 LKDLDNGSFENVPAPAIAIDYWRLPAESTLRDVVEVIRADEAHHRDVNHYASDIQCQGHQ 274

Query: 242 LRESPAPLGYH 252
            ++ PAPLGYH
Sbjct: 275 FKDVPAPLGYH 285


>gi|90959751|dbj|BAE92716.1| Alternative Oxidase [Solanum tuberosum]
          Length = 337

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/228 (84%), Positives = 204/228 (89%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K  K DG+EWKWNCFRPWE YEAD+SIDL KHHAP TF DK A WTVK L
Sbjct: 106 VVSYWGVPPSKATKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKVL 165

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 166 RFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 225

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP  YERALVFAVQGVFFNAYF  YLISPK AHR+VGYLEEEA+HSYTEF
Sbjct: 226 MHLMTFMEVAKPNVYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEF 285

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 229
           LKELD GNIENVPAPAIA DYWRLP ++TL+DVVLVVRADEAHHR+  
Sbjct: 286 LKELDNGNIENVPAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRECQ 333


>gi|225427480|ref|XP_002262982.1| PREDICTED: alternative oxidase 3, mitochondrial [Vitis vinifera]
 gi|296088482|emb|CBI37473.3| unnamed protein product [Vitis vinifera]
          Length = 322

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 216/251 (86%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV    + K+DGS WKW+CFRPWE Y+AD+SID++KHH P  F DK A WTV++L
Sbjct: 72  IVSYWGVPPANLTKEDGSPWKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQAL 131

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           + PT +FFQR++ C AM+LETVAAVPGMVGGMLLHC+S RRFE SGGWIKALLEEAENER
Sbjct: 132 KIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSPRRFEQSGGWIKALLEEAENER 191

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+E+AKP+WYERA+VFAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEF
Sbjct: 192 MHLMTFIELAKPQWYERAIVFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEF 251

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+LD G+ ENVPAPAIA DYWRLP  STL+DVV V+RADEAHHRDVNHYASDI  QG Q
Sbjct: 252 LKDLDNGSFENVPAPAIAIDYWRLPAESTLRDVVEVIRADEAHHRDVNHYASDIQCQGHQ 311

Query: 242 LRESPAPLGYH 252
            ++ PAPLGYH
Sbjct: 312 FKDVPAPLGYH 322


>gi|351724097|ref|NP_001235766.1| ubiquinol oxidase 2, mitochondrial [Glycine max]
 gi|3913067|sp|Q41266.2|AOX2_SOYBN RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|1946336|gb|AAB97285.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+  PKV ++DG+EW WNCF PWE+Y +++SIDL KHH P    DK+A  TVK LR 
Sbjct: 85  SYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRI 144

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMH
Sbjct: 145 PTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMH 204

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 205 LMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 264

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +L+ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 265 DLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 324

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 325 EAPAPIGYH 333


>gi|32130599|gb|AAP68984.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+  PKV ++DG+EW WNCF PWE+Y +++SIDL KHH P    DK+A  TVK LR 
Sbjct: 85  SYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRI 144

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMH
Sbjct: 145 PTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMH 204

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 205 LMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 264

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +L+ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 265 DLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 324

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 325 EAPAPIGYH 333


>gi|296086812|emb|CBI32961.3| unnamed protein product [Vitis vinifera]
          Length = 327

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 217/251 (86%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           + SY G+  PK+ + DG+EW WN F PWE Y AD +IDL KHH P TF DK+A  TVK L
Sbjct: 77  VSSYCGISRPKIVRKDGTEWPWNSFVPWETYHADTAIDLSKHHVPKTFVDKVAYRTVKLL 136

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGW+KALLEEAENER
Sbjct: 137 RIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAENER 196

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMT +E+ +PKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 197 MHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSYTEF 256

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+QG++
Sbjct: 257 LKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQGKK 316

Query: 242 LRESPAPLGYH 252
           L E+PAP+GYH
Sbjct: 317 LNEAPAPIGYH 327


>gi|18398395|ref|NP_564395.1| alternative oxidase 3 [Arabidopsis thaliana]
 gi|85681032|sp|Q8LEE7.2|AOX3_ARATH RecName: Full=Ubiquinol oxidase 3, mitochondrial; AltName:
           Full=Alternative oxidase 3; Flags: Precursor
 gi|8920609|gb|AAF81331.1|AC007767_11 Strong similarity to alternative oxidase from Populus tremula x
           Populus tremuloides gb|AJ271889. It contains an
           alternative oxidase domain PF|01786 [Arabidopsis
           thaliana]
 gi|115311485|gb|ABI93923.1| At1g32350 [Arabidopsis thaliana]
 gi|332193346|gb|AEE31467.1| alternative oxidase 3 [Arabidopsis thaliana]
          Length = 318

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++
Sbjct: 67  VISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct: 127 LKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENE 186

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct: 187 RMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 246

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G 
Sbjct: 247 FLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGH 306

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 307 ELKEAPAPIGYH 318


>gi|9759397|dbj|BAB09852.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 282

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/251 (74%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 4   SYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           SYWG+E  K  + + DGS+W WNCF PWE Y+A+LSIDLKKHH P   +DK+A   VK L
Sbjct: 32  SYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLL 91

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAENER
Sbjct: 92  RIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENER 151

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMT ME+ KPKWYER LV  VQG+FFN++F+ Y+ISP+ AHR+VGYLEEEAIHSYTEF
Sbjct: 152 MHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEF 211

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G IENV APAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG++
Sbjct: 212 LKDIDNGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKE 271

Query: 242 LRESPAPLGYH 252
           LRE+ AP+GYH
Sbjct: 272 LREAAAPIGYH 282


>gi|302805258|ref|XP_002984380.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
 gi|300147768|gb|EFJ14430.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
          Length = 335

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 214/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++  YWG+   K+  + G  W WN FRP EAY  DL+IDLKKHH P +  DK+A WTVK+
Sbjct: 84  VVSDYWGILPKKLVDEQGKPWPWNSFRPTEAYAPDLTIDLKKHHNPVSVVDKLAYWTVKT 143

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVA VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE
Sbjct: 144 LRIPTDIFFQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 203

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEV +PKWYERALVF VQGVFFNAYFL Y++ P+ AHR+VGYLEEEAIHSYT+
Sbjct: 204 RMHLMTFMEVVQPKWYERALVFTVQGVFFNAYFLCYVLFPRLAHRIVGYLEEEAIHSYTQ 263

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LKE+DKG I NVPAPAIA DYWRLP ++ ++DVV VVRADEAHHRDVNH+A+DIH  G+
Sbjct: 264 YLKEIDKGTIPNVPAPAIAIDYWRLPKDAKMRDVVEVVRADEAHHRDVNHFAADIHKAGK 323

Query: 241 QLRESPAPLGYH 252
           +LR + APL YH
Sbjct: 324 ELRSAAAPLSYH 335


>gi|30697967|ref|NP_201226.2| alternative oxidase 2 [Arabidopsis thaliana]
 gi|21264382|sp|O22049.2|AOX2_ARATH RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|15216224|dbj|BAA22636.2| alternative oxidase [Arabidopsis thaliana]
 gi|67633916|gb|AAY78882.1| mitochondrial alternative oxidase 2 [Arabidopsis thaliana]
 gi|332010472|gb|AED97855.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 353

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/251 (74%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 4   SYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           SYWG+E  K  + + DGS+W WNCF PWE Y+A+LSIDLKKHH P   +DK+A   VK L
Sbjct: 103 SYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAENER
Sbjct: 163 RIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMT ME+ KPKWYER LV  VQG+FFN++F+ Y+ISP+ AHR+VGYLEEEAIHSYTEF
Sbjct: 223 MHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G IENV APAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG++
Sbjct: 283 LKDIDNGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKE 342

Query: 242 LRESPAPLGYH 252
           LRE+ AP+GYH
Sbjct: 343 LREAAAPIGYH 353


>gi|302782061|ref|XP_002972804.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
 gi|300159405|gb|EFJ26025.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
          Length = 302

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/252 (74%), Positives = 213/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I  YWG+   K+  + G  W WN FRP EAY  DL+IDLKKHH P +  DK+A WTVK+
Sbjct: 51  VISDYWGILPKKLVDEQGKPWPWNSFRPTEAYAPDLTIDLKKHHNPVSVVDKLAYWTVKT 110

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVA VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE
Sbjct: 111 LRIPTDIFFQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 170

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEV +PKWYERALVF VQGVFFNAYFL Y++ P+ AHR+VGYLEEEAIHSYTE
Sbjct: 171 RMHLMTFMEVVQPKWYERALVFTVQGVFFNAYFLCYVLFPRLAHRIVGYLEEEAIHSYTE 230

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LKE+DKG I N PAPAIA DYWRLP ++ ++DVV VVRADEAHHRDVNH+A+DIH  G+
Sbjct: 231 YLKEIDKGTIPNAPAPAIAIDYWRLPKDAKMRDVVEVVRADEAHHRDVNHFAADIHKAGK 290

Query: 241 QLRESPAPLGYH 252
           +LR + APL YH
Sbjct: 291 ELRSAAAPLSYH 302


>gi|297851678|ref|XP_002893720.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
 gi|297339562|gb|EFH69979.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
          Length = 315

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 219/252 (86%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++
Sbjct: 64  VMSTYWGIPPAKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 123

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct: 124 LKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENE 183

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWYERA+VF VQG FFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct: 184 RMHLMTFIELSQPKWYERAIVFTVQGAFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 243

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G 
Sbjct: 244 FLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGH 303

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 304 ELKEAPAPIGYH 315


>gi|226498802|ref|NP_001147743.1| transposon protein [Zea mays]
 gi|195613414|gb|ACG28537.1| transposon protein [Zea mays]
 gi|414585626|tpg|DAA36197.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 216/251 (86%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG+E  K+ K+DG+EW+W CFRPW+ Y AD SID+KKHH P    DK+A W VKSL
Sbjct: 79  VVSYWGIEPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALPDKLAYWLVKSL 138

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
             P  LFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENER
Sbjct: 139 VVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENER 198

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EVA+PKW+ERALV A QGV+FNAYF+ YL SPKFAHR VGYLEEEA+HSYTE+
Sbjct: 199 MHLMTFLEVAQPKWWERALVLAAQGVYFNAYFVAYLASPKFAHRFVGYLEEEAVHSYTEY 258

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 259 LKDLEAGIIDNTPAPAIAIDYWRLPADARLKDVVAVVRADEAHHRDVNHFASDIHYQGMK 318

Query: 242 LRESPAPLGYH 252
           LR++PAPLGYH
Sbjct: 319 LRDTPAPLGYH 329


>gi|357165631|ref|XP_003580445.1| PREDICTED: alternative oxidase 1b, mitochondrial-like [Brachypodium
           distachyon]
          Length = 324

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/251 (73%), Positives = 216/251 (86%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG+E  K+ K DG+EW W CFRPW+ Y AD +ID++KHH P +  DK+A +TVK+L
Sbjct: 74  VVSYWGIEPRKLVKADGTEWPWFCFRPWDTYTADTAIDMQKHHEPKSLPDKIAYYTVKTL 133

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
             P DLFFQRR+   A++LETVAAVP MVGGMLLH +SLRRFEHSGGWI+AL+EEAENER
Sbjct: 134 GVPKDLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLRRFEHSGGWIRALMEEAENER 193

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +PKW+ERALV AVQGVFFNAYF+GYL+SPKFAHR VGYLEEEA+ SYTE+
Sbjct: 194 MHLMTFLEVTQPKWWERALVMAVQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVKSYTEY 253

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++TLKDVV VVRADEAHHRD NHYASDIHYQG  
Sbjct: 254 LKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVAVVRADEAHHRDANHYASDIHYQGLT 313

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 314 LKETPAPIGYH 324


>gi|242077036|ref|XP_002448454.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
 gi|241939637|gb|EES12782.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
          Length = 314

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 215/251 (85%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG++  K+ K+DG+EW+W CFRPW+ Y AD SID+KKHH P    DK+A W VKSL
Sbjct: 64  VVSYWGIQPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALPDKLAYWLVKSL 123

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
             P  LFFQRR+   A++LETVAAVPGMVGGMLLH  SLRRFEHSGGWI+ALLEEAENER
Sbjct: 124 IVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLGSLRRFEHSGGWIRALLEEAENER 183

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EVA+PKW+ERALV A QGVFFNAYF+ YL SPKFAHR VGYLEEEA+HSYTE+
Sbjct: 184 MHLMTFLEVAQPKWWERALVLAAQGVFFNAYFVAYLASPKFAHRFVGYLEEEAVHSYTEY 243

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDIHYQG +
Sbjct: 244 LKDLEAGVIENTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVNHFASDIHYQGMK 303

Query: 242 LRESPAPLGYH 252
           L+++PAPLGYH
Sbjct: 304 LKDTPAPLGYH 314


>gi|21553592|gb|AAM62685.1| oxidase, putative [Arabidopsis thaliana]
          Length = 318

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 179/252 (71%), Positives = 219/252 (86%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++
Sbjct: 67  VISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L+ P  LFFQR++ C AM+LETVAAVPGMVG MLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct: 127 LKIPVQLFFQRKHMCHAMLLETVAAVPGMVGWMLLHLKSLRRFEHSGGWIKALLEEAENE 186

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct: 187 RMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 246

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G 
Sbjct: 247 FLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGH 306

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 307 ELKEAPAPIGYH 318


>gi|357165634|ref|XP_003580446.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 330

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 214/251 (85%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG+E+ K+ K DG+EW W CF PW+ Y AD SID++KHH P +  DK+A + V+SL
Sbjct: 80  VVSYWGIESRKLVKPDGTEWPWFCFTPWDTYRADTSIDMEKHHKPKSVPDKVAYYAVRSL 139

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVP MVGGMLLH +SLRRFEHSGGWI+AL+EEAENER
Sbjct: 140 RVPMDLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLRRFEHSGGWIRALMEEAENER 199

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +P W+ERALV A QGVF NAYF+GYL+SPKFAHR VGYLEEEA+HSYTE+
Sbjct: 200 MHLMTFLEVTQPNWWERALVMAAQGVFVNAYFVGYLVSPKFAHRFVGYLEEEAVHSYTEY 259

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++TLKDVV V+RADEAHHRD NHYASDIHYQG  
Sbjct: 260 LKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDANHYASDIHYQGLT 319

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 320 LKETPAPIGYH 330


>gi|115460318|ref|NP_001053759.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|3218543|dbj|BAA28771.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218548|dbj|BAA28774.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|38345774|emb|CAE03472.2| OSJNBa0083N12.12 [Oryza sativa Japonica Group]
 gi|113565330|dbj|BAF15673.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|116310915|emb|CAH67853.1| B0403H10-OSIGBa0105A11.5 [Oryza sativa Indica Group]
 gi|125549593|gb|EAY95415.1| hypothetical protein OsI_17255 [Oryza sativa Indica Group]
 gi|125591518|gb|EAZ31868.1| hypothetical protein OsJ_16033 [Oryza sativa Japonica Group]
 gi|215741542|dbj|BAG98037.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 335

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 214/251 (85%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG++ PK+ K+DG+EWKW  FRPW+ Y +D SID+ KHH P    DK+A WTV+SL
Sbjct: 85  VVSYWGIQPPKLVKEDGTEWKWLSFRPWDTYTSDTSIDVTKHHEPKGLPDKLAYWTVRSL 144

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
             P DLFFQRR+   A++LETVA VPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENER
Sbjct: 145 AVPRDLFFQRRHASHALLLETVAGVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENER 204

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +P+W+ERALV A QGVFFNAYF+GYL+SPKFAHR VGYLEEEA+ SYTE+
Sbjct: 205 MHLMTFLEVMQPRWWERALVLAAQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVSSYTEY 264

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++TLKDVV V+RADEAHHRD+NH+ASDI  QG +
Sbjct: 265 LKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQQQGMK 324

Query: 242 LRESPAPLGYH 252
           L+++PAP+GYH
Sbjct: 325 LKDTPAPIGYH 335


>gi|51860697|gb|AAU11468.1| mitochondrial alternative oxidase 1b [Saccharum officinarum]
          Length = 285

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 214/251 (85%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG++  K+ K+DG+EW+W CFRPW+ Y AD SID+KKHH P    DK+A W VKSL
Sbjct: 35  VVSYWGIQPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALLDKLAYWLVKSL 94

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
             P  LFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHS GWI+ALLEEAENER
Sbjct: 95  VVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSDGWIRALLEEAENER 154

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EVA+PKW+ERALV A QGV+FNAYF+ YL SPKFAHR VGYLEEEA+HSYTE+
Sbjct: 155 MHLMTFLEVAQPKWWERALVLAAQGVYFNAYFVAYLASPKFAHRFVGYLEEEAVHSYTEY 214

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G I+N P PAIA DYWRLP ++ LKDVV +VRADEAHHRDVNH+ASDIHYQG +
Sbjct: 215 LKDLEAGIIDNTPVPAIAIDYWRLPADAKLKDVVTIVRADEAHHRDVNHFASDIHYQGMK 274

Query: 242 LRESPAPLGYH 252
           L+++PAPLGYH
Sbjct: 275 LKDTPAPLGYH 285


>gi|302760025|ref|XP_002963435.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
 gi|300168703|gb|EFJ35306.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
          Length = 320

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/248 (74%), Positives = 210/248 (84%), Gaps = 2/248 (0%)

Query: 5   YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWP 64
           YWG+   +  ++DG  W WN FRP +AY  D+SIDLKKHH P +F DK A WT  S +  
Sbjct: 75  YWGIVTKRPVREDGKAWPWNSFRPTDAYTPDVSIDLKKHHTPLSFVDKFAYWT--SYKLG 132

Query: 65  TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
             LF QRRYGCRAMMLETVAAVPGMVGGMLLHC+SLRRFEHSGGWIKALLEEAENERMHL
Sbjct: 133 LVLFLQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAENERMHL 192

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           MTFMEV +PKWYERALVFAVQGVFFNAY + Y+  P+ AHR+VGYLEEEAIHSYTE++KE
Sbjct: 193 MTFMEVVQPKWYERALVFAVQGVFFNAYMVCYIAFPRLAHRIVGYLEEEAIHSYTEYIKE 252

Query: 185 LDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRE 244
           +DKGNI N PAPAIA DYWRLP ++ ++DVV VVRADEAHHRDVNH+A+DIH +G+QLRE
Sbjct: 253 IDKGNIPNTPAPAIAIDYWRLPKDAKIRDVVQVVRADEAHHRDVNHFAADIHLKGKQLRE 312

Query: 245 SPAPLGYH 252
           +PAPLGYH
Sbjct: 313 APAPLGYH 320


>gi|125581850|gb|EAZ22781.1| hypothetical protein OsJ_06456 [Oryza sativa Japonica Group]
          Length = 404

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 203/227 (89%)

Query: 26  FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAA 85
           F+PW+ YEAD++IDL KHH P T  DK+A WTVKSLRWP DLFFQRRYGCRAMMLETVAA
Sbjct: 178 FQPWDTYEADVAIDLTKHHNPATLGDKVARWTVKSLRWPVDLFFQRRYGCRAMMLETVAA 237

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMV G +LH +SLRRFEHSGGWI+ALLEEAENERMHLMTFMEV++P+WYERALV AVQ
Sbjct: 238 VPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVSQPRWYERALVVAVQ 297

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
           G FFNAY   YL+SP+FAHR+VGYLEEEA+HSYTEFL++LD G I++VPAPAIA DYWRL
Sbjct: 298 GAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGKIDDVPAPAIAIDYWRL 357

Query: 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           P ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG  LRE  APLGYH
Sbjct: 358 PADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPLGYH 404


>gi|326521476|dbj|BAK00314.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 330

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 209/251 (83%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG+E  K+ KDDG+EW W CFRPW+ Y  D SI + KHH P    DK+A + V+SL
Sbjct: 80  VVSYWGIEPRKLVKDDGTEWPWFCFRPWDTYRPDTSIGVAKHHEPRALPDKVAYFVVRSL 139

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVP MVGG+LLH +SLRRFEHSGGWI+AL+EEAENER
Sbjct: 140 RVPRDLFFQRRHASHALLLETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRALMEEAENER 199

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV +P+W+ERALV A QGVFFNAYF+GYLISPKFAHR VGYLEEEA+ SYTE+
Sbjct: 200 MHLMTFMEVTQPRWWERALVLAAQGVFFNAYFVGYLISPKFAHRFVGYLEEEAVESYTEY 259

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+L+ G IEN PAPAIA DYWRLP ++ LKDVV  VRADEAHHRD NHYASDIHYQG  
Sbjct: 260 LKDLEAGLIENTPAPAIAIDYWRLPADARLKDVVTAVRADEAHHRDANHYASDIHYQGMT 319

Query: 242 LRESPAPLGYH 252
           L ++PAPLGYH
Sbjct: 320 LNQTPAPLGYH 330


>gi|18176467|gb|AAL60049.1| At1g32350/F5D14.4 [Arabidopsis thaliana]
          Length = 317

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 175/252 (69%), Positives = 216/252 (85%), Gaps = 1/252 (0%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++
Sbjct: 67  VISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L+ P  LFFQR++ C AM+LETVA VPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct: 127 LKIPVQLFFQRKHMCHAMLLETVA-VPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENE 185

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct: 186 RMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 245

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++D G  EN PAPAIA DYWR P ++TL+DVV V+RA+EA  RD+NHYASDI ++G 
Sbjct: 246 FLKDIDAGKFENSPAPAIAMDYWRFPKDATLRDVVYVIRAEEAPPRDINHYASDIQFKGH 305

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 306 ELKEAPAPIGYH 317


>gi|17154769|emb|CAD12835.1| putative alternative oxidase [Vigna unguiculata]
 gi|70799005|gb|AAZ09195.1| mitochondrial alternative oxidase 2b [Vigna unguiculata]
          Length = 326

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 173/252 (68%), Positives = 216/252 (85%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I SYWG+  PKV ++DG+EW WNCF PW+ Y +D+SID+ KHH P + +DK+A  +VK 
Sbjct: 75  VISSYWGISRPKVRREDGTEWPWNCFMPWDTYHSDVSIDVTKHHTPKSLTDKVAFRSVKF 134

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR  +DL+F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 135 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 194

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKW+ER L+F  QGVFFNA+F+ YL+SPK AHR VGYLEEEA+ SYT+
Sbjct: 195 RMHLMTMVELVQPKWHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEEEAVISYTQ 254

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
            L+ ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 255 HLEAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGK 314

Query: 241 QLRESPAPLGYH 252
           +LR++PAP+GYH
Sbjct: 315 ELRDAPAPIGYH 326


>gi|168044781|ref|XP_001774858.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673752|gb|EDQ60270.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 289

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/252 (72%), Positives = 221/252 (87%), Gaps = 2/252 (0%)

Query: 2   IVSYWGVEAPKVN-KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           I SYWGV  PKV  K+DG+ WKW CF P E Y  D++IDL+K HA  T++D +A W VKS
Sbjct: 39  ISSYWGV-VPKVQHKEDGTPWKWTCFTPHETYYPDVTIDLEKTHARKTYTDSIAYWLVKS 97

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR P+D+FF++RY  RAMMLETVAAVPGMVGGMLLHCKSLR+F++SGGWIKALLEEAENE
Sbjct: 98  LRVPSDMFFKKRYDVRAMMLETVAAVPGMVGGMLLHCKSLRKFQNSGGWIKALLEEAENE 157

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVA+PKW+ERALVFAVQGVFFNAYFL YL+SPK AHR+ GYLEEEA++SYT+
Sbjct: 158 RMHLMTFMEVAQPKWWERALVFAVQGVFFNAYFLLYLVSPKIAHRITGYLEEEAVYSYTQ 217

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK +D+G+ +N PAP+IA DYWRLP ++T++DVV+VVRADEAHHRDVNH+A+DI  +G+
Sbjct: 218 FLKMIDEGHFQNGPAPSIAIDYWRLPKDATIRDVVMVVRADEAHHRDVNHFAADILDRGK 277

Query: 241 QLRESPAPLGYH 252
           +LRESPAP+GYH
Sbjct: 278 ELRESPAPVGYH 289


>gi|326519218|dbj|BAJ96608.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 324

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/250 (72%), Positives = 208/250 (83%)

Query: 3   VSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLR 62
           VSYWG+E  K+ KDDG+EW W CFRPW+ Y  D SID+ KHH P    DK+A   V++LR
Sbjct: 75  VSYWGIEPRKLVKDDGTEWPWFCFRPWDTYRPDTSIDVAKHHEPRALPDKVAYLIVRTLR 134

Query: 63  WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 122
             +DLFFQRR+   A++LETVAAVP MVGG+LLH +SLRRFEHSGGWI+AL+EEAENERM
Sbjct: 135 AGSDLFFQRRHASHALLLETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRALMEEAENERM 194

Query: 123 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 182
           HLMTFMEV +P W+ERALV A QGVFFNAYF+GYL+SPKFAHR VGYLEEEA+HSYTE+L
Sbjct: 195 HLMTFMEVTQPLWWERALVLATQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVHSYTEYL 254

Query: 183 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           K+L+ G IEN PAPAIA DYWRLP ++ LKDVV  VRADEAHHRD NHYASDIHYQG  L
Sbjct: 255 KDLEAGLIENTPAPAIAIDYWRLPADARLKDVVTAVRADEAHHRDANHYASDIHYQGMTL 314

Query: 243 RESPAPLGYH 252
            ++PAPLGYH
Sbjct: 315 NQTPAPLGYH 324


>gi|32130598|gb|AAP68983.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 171/252 (67%), Positives = 214/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV ++DG+EW WNCF PW++Y +D+SID+ KHH P + +DK+A   VK 
Sbjct: 75  VVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHTPKSLTDKVAFRAVKF 134

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR  +D++F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 135 LRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 194

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KP W+ER L+F  QGVFFNA+F+ YL+SPK AHR VGYLEEEA+ SYT+
Sbjct: 195 RMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEEEAVISYTQ 254

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
            L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 255 HLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGK 314

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 315 ELKEAPAPIGYH 326


>gi|351728013|ref|NP_001238460.1| alternative oxidase 3, mitochondrial [Glycine max]
 gi|3023305|sp|O03376.1|AOX3_SOYBN RecName: Full=Alternative oxidase 3, mitochondrial; Flags:
           Precursor
 gi|1946338|gb|AAB97286.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 171/252 (67%), Positives = 214/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV ++DG+EW WNCF PW++Y +D+SID+ KHH P + +DK+A   VK 
Sbjct: 75  VVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHTPKSLTDKVAFRAVKF 134

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR  +D++F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 135 LRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 194

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KP W+ER L+F  QGVFFNA+F+ YL+SPK AHR VGYLEEEA+ SYT+
Sbjct: 195 RMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEEEAVISYTQ 254

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
            L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 255 HLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGK 314

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 315 ELKEAPAPIGYH 326


>gi|302800473|ref|XP_002981994.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
 gi|300150436|gb|EFJ17087.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
          Length = 335

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/249 (71%), Positives = 210/249 (84%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           +YWG+   K  ++DG+ W WNCF+P ++Y +D SID+KKHH P    DK+AL TVK LR 
Sbjct: 87  NYWGIITKKTLREDGTPWPWNCFKPSDSYVSDTSIDVKKHHIPDAVVDKVALKTVKFLRA 146

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
            +DLFFQ R+GC A++LETVAAVPGMVGGMLLHCKSLR+FEHSGGWIKALLEEAENERMH
Sbjct: 147 LSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMH 206

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEV +PKWYERALV AVQGVFFN YF  YLI P+ AHR VGYLEEEA+ SYTEFL 
Sbjct: 207 LMTFMEVFQPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEEAVASYTEFLA 266

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
            LDKG++ N PAPAIA DYWRLP ++TL+DVV VVRADEAHHRDVNH+A+D H QG++L+
Sbjct: 267 ALDKGSMPNTPAPAIAIDYWRLPSDATLRDVVFVVRADEAHHRDVNHFAADAHLQGKELK 326

Query: 244 ESPAPLGYH 252
           +SPAP+GYH
Sbjct: 327 DSPAPIGYH 335


>gi|357490753|ref|XP_003615664.1| Alternative oxidase [Medicago truncatula]
 gi|355516999|gb|AES98622.1| Alternative oxidase [Medicago truncatula]
          Length = 275

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 171/252 (67%), Positives = 212/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV ++DG+EW WNCF PWE+Y +D+SID+ KHH P TF DK A  +VK 
Sbjct: 24  VVSSYWGITRPKVKREDGTEWPWNCFMPWESYSSDVSIDVTKHHVPKTFGDKFAFRSVKF 83

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR  +DL+F+ RYGC AMMLET+AAVP MVGGMLLH KSLR+F+H+GGWIKALLEEAENE
Sbjct: 84  LRVLSDLYFKERYGCHAMMLETIAAVPPMVGGMLLHLKSLRKFQHTGGWIKALLEEAENE 143

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KP W+ER LV   QGVFFNA+F+ Y++SPK AHR VGYLEEEA+ SYT+
Sbjct: 144 RMHLMTMVELVKPSWHERLLVITAQGVFFNAFFVFYILSPKTAHRFVGYLEEEAVISYTQ 203

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
            L  ++ G +ENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 204 HLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHHQGK 263

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 264 ELKEAPAPIGYH 275


>gi|302808760|ref|XP_002986074.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
 gi|300146222|gb|EFJ12893.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
          Length = 335

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 210/249 (84%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           +YWG+   K  ++DG+ W WNCF+P ++Y +D SID+KKHH P    DK+AL TVK LR 
Sbjct: 87  NYWGIITKKTLREDGTPWPWNCFKPSDSYVSDTSIDVKKHHIPDAVVDKVALKTVKFLRV 146

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
            +DLFFQ R+GC A++LETVAAVPGMVGGMLLHCKSLR+FEHSGGWIKALLEEAENERMH
Sbjct: 147 LSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMH 206

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMTFMEV +PKWYERALV AVQGVFFN YF  YLI P+ AHR VGYLEEEA+ SYT+FL 
Sbjct: 207 LMTFMEVFQPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEEAVASYTDFLA 266

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
            LDKG++ N PAPAIA DYWRLP ++TL+DVV VVRADEAHHRDVNH+A+D H QG++L+
Sbjct: 267 ALDKGSMPNTPAPAIAIDYWRLPSDATLRDVVFVVRADEAHHRDVNHFAADAHLQGKELK 326

Query: 244 ESPAPLGYH 252
           +SPAP+GYH
Sbjct: 327 DSPAPIGYH 335


>gi|302776856|ref|XP_002971569.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
 gi|300160701|gb|EFJ27318.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
          Length = 309

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 207/252 (82%), Gaps = 13/252 (5%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++  YWG+   +  ++DG  W WN FRP +AY  D+SIDLKKHH P +F DK A WT   
Sbjct: 71  VLSHYWGIVTKRPVREDGKAWPWNSFRPSDAYTPDVSIDLKKHHTPLSFVDKFAYWT--- 127

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
                     RRYGCRAMMLETVAAVPGMVGGMLLHC+SLRRFEHSGGWIKALLEEAENE
Sbjct: 128 ----------RRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAENE 177

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEV +PKWYERALVFAVQGVFFNAY + Y+  P+ AHR+VGYLEEEAIHSYTE
Sbjct: 178 RMHLMTFMEVVQPKWYERALVFAVQGVFFNAYMVCYIAFPRLAHRIVGYLEEEAIHSYTE 237

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           ++KE+DKGNI N PAPAIA DYWRLP ++ ++DVV VVRADEAHHRDVNH+A+DIH +G+
Sbjct: 238 YIKEIDKGNIPNTPAPAIAIDYWRLPKDAKIRDVVQVVRADEAHHRDVNHFAADIHLKGK 297

Query: 241 QLRESPAPLGYH 252
           QLRE+PAPLGYH
Sbjct: 298 QLREAPAPLGYH 309


>gi|414585625|tpg|DAA36196.1| TPA: hypothetical protein ZEAMMB73_161603 [Zea mays]
          Length = 332

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/232 (74%), Positives = 202/232 (87%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWG++ PK+ K+DG+EWKW  FRPW+AY +D SID+ KHHAPTT  DK A   VKSL
Sbjct: 82  VVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPTTLPDKAAYLIVKSL 141

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R P DLFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENER
Sbjct: 142 RVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENER 201

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF+EV +P+W+ERALV   QGVFFNAYF+GYL+SPKFAHR+VGYLEEEA+HSYTE+
Sbjct: 202 MHLMTFLEVTQPRWWERALVLTAQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAVHSYTEY 261

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+AS
Sbjct: 262 LKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVNHFAS 313


>gi|433335541|gb|AGB34164.1| mitochondrial alternative oxidase 1c [Olea europaea subsp.
           europaea]
          Length = 353

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 204/233 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV   +  K+DGS W+WNCFRPWE Y+AD SID+ KHH  TTF DK A WTV+S
Sbjct: 80  VVSSYWGVPPSRATKEDGSPWRWNCFRPWETYKADTSIDVTKHHKATTFMDKFAYWTVQS 139

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KS+RRFEHSGGWIKALLEEAENE
Sbjct: 140 LKFPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHLKSIRRFEHSGGWIKALLEEAENE 199

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWY+RALVFAVQGVF NAYF+ Y++SPK AHR+VGYLEEEA++SYTE
Sbjct: 200 RMHLMTFLELSQPKWYQRALVFAVQGVFANAYFVSYVVSPKLAHRIVGYLEEEAVNSYTE 259

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           FL +L+KG +EN PAPAIA DYW+LP  STLKDVV V+RADEAHHRD+NH+AS
Sbjct: 260 FLIDLEKGLVENRPAPAIAIDYWQLPSESTLKDVVTVIRADEAHHRDLNHFAS 312


>gi|208436660|gb|ACI28876.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 297

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 201/228 (88%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K+ K+DG+EWKW+CF+P EAY+AD+SIDL KHH P  +++K+A W VK L
Sbjct: 70  VVSYWGVAPVKLTKEDGTEWKWSCFKPSEAYKADVSIDLGKHHVPRVWTEKVAYWGVKML 129

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENER
Sbjct: 130 RLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENER 189

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP+WYERALVFAVQG+F+N YF+ Y+ISPK AHR VGYLEEEAIHS  EF
Sbjct: 190 MHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSCNEF 249

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 229
           +KELD GNI NVPAPAIA DYWRL P+STL+DVV+V RADEAHHRDVN
Sbjct: 250 IKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVARADEAHHRDVN 297


>gi|357490777|ref|XP_003615676.1| Alternative oxidase [Medicago truncatula]
 gi|355517011|gb|AES98634.1| Alternative oxidase [Medicago truncatula]
          Length = 324

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/252 (68%), Positives = 213/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV K+DG+EW WNCF PWE+Y +D+SID+ KHH P TF DK A  +VK 
Sbjct: 73  VVSSYWGISRPKVLKEDGTEWPWNCFMPWESYSSDVSIDVTKHHVPKTFGDKFAFRSVKF 132

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR  +DL+F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+H+GGWIKALLEEAENE
Sbjct: 133 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALLEEAENE 192

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ KP W+ER LV   QGVFFN +F+ Y++SPK AHR VGYLEEEA+ SYT+
Sbjct: 193 RMHLMTMVELVKPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQ 252

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 253 YLNAIESGKVENVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRDVNHFASDIHHQGK 312

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 313 ELKEAPAPVGYH 324


>gi|388501212|gb|AFK38672.1| unknown [Lotus japonicus]
          Length = 314

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/252 (68%), Positives = 212/252 (84%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV ++DG+EW WNCF PW++Y AD+SID+ KHH P T +DK+A   VK 
Sbjct: 63  VVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKF 122

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR  +DL+F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENE
Sbjct: 123 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 182

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT  E+ KP W+ER LV   QGVFFN +F+ YL+SPK AHR VGYLEEEA+ SYT+
Sbjct: 183 RMHLMTMTELVKPSWHERLLVITAQGVFFNFFFVFYLLSPKAAHRFVGYLEEEAVISYTD 242

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
            L  +++G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG+
Sbjct: 243 HLNAIERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGK 302

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 303 ELKEAPAPVGYH 314


>gi|31322552|gb|AAP35170.1| alternative oxidase [Cucumis sativus]
          Length = 214

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 166/214 (77%), Positives = 191/214 (89%)

Query: 39  DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 98
           DL KHH P TF DK+A   VK LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH K
Sbjct: 1   DLGKHHQPKTFLDKVAYRVVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLK 60

Query: 99  SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 158
           SLR+F+HSGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+
Sbjct: 61  SLRKFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLM 120

Query: 159 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 218
           SPK AHR+VGYLEEEAIHSYTE+LK++++G IENVPAPAIA DYWRLP ++ LKDV+ V+
Sbjct: 121 SPKLAHRIVGYLEEEAIHSYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVI 180

Query: 219 RADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           RADEAHHRDVNH+ASDIH+QG++LRES APLGYH
Sbjct: 181 RADEAHHRDVNHFASDIHFQGKELRESAAPLGYH 214


>gi|147799085|emb|CAN72564.1| hypothetical protein VITISV_018234 [Vitis vinifera]
          Length = 218

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/201 (83%), Positives = 183/201 (91%)

Query: 52  KMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK 111
           K+A W VK LR PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI+
Sbjct: 18  KVAYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIR 77

Query: 112 ALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 171
            LLEEAENERMHLMTFMEVAKP+WYERALVFAVQG+F+N YF+ Y+ISPK AHR VGYLE
Sbjct: 78  VLLEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGYLE 137

Query: 172 EEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHY 231
           EEAIHSY EF+KELD GNI NVPAPAIA DYWRL P+STL+DVV+VVRADEAHHRDVNHY
Sbjct: 138 EEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVVRADEAHHRDVNHY 197

Query: 232 ASDIHYQGRQLRESPAPLGYH 252
           ASDIHYQG QL+E PAPLGYH
Sbjct: 198 ASDIHYQGLQLKEFPAPLGYH 218


>gi|12597864|gb|AAG60173.1|AC084110_6 oxidase, putative [Arabidopsis thaliana]
          Length = 287

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 163/252 (64%), Positives = 197/252 (78%), Gaps = 31/252 (12%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID                     
Sbjct: 67  VISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSID--------------------- 105

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
                     R++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct: 106 ----------RKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENE 155

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct: 156 RMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 215

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G 
Sbjct: 216 FLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGH 275

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 276 ELKEAPAPIGYH 287


>gi|208436644|gb|ACI28868.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 205

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 181/205 (88%)

Query: 22  KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 81
           KWN FRPWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+LE
Sbjct: 1   KWNSFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLE 60

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVAAVPGMVGGMLLHC+SLRRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERALV
Sbjct: 61  TVAAVPGMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALV 120

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 201
           FAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA D
Sbjct: 121 FAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAID 180

Query: 202 YWRLPPNSTLKDVVLVVRADEAHHR 226
           YWRLP  STL+DVV V+RADEAHHR
Sbjct: 181 YWRLPAESTLRDVVEVIRADEAHHR 205


>gi|208436662|gb|ACI28877.1| mitochondrial alternative oxidase 1b [Vitis vinifera]
          Length = 201

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 178/201 (88%)

Query: 21  WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 80
           WKW+CFRPWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+L
Sbjct: 1   WKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKVPTHMFFQRKHMCHAMLL 60

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ETVAAVPGMVGGMLLHC+SLRRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERAL
Sbjct: 61  ETVAAVPGMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAL 120

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 200
           VFAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA 
Sbjct: 121 VFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAI 180

Query: 201 DYWRLPPNSTLKDVVLVVRAD 221
           DYWRLP  STL+DVV V+RAD
Sbjct: 181 DYWRLPAESTLRDVVEVIRAD 201


>gi|297797435|ref|XP_002866602.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312437|gb|EFH42861.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 355

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 167/258 (64%), Positives = 199/258 (77%), Gaps = 8/258 (3%)

Query: 2   IVSYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTT---FSDKMALW 56
           + SYWG+E  K  + + DGS+W WNCF PWE Y+A+LSIDLKKHH P       D  A  
Sbjct: 99  VPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPNRQNRLPDSQAPP 158

Query: 57  TVKSLRWP-TDLFFQRRYGCRAM-MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
                 +P   L  Q+    ++  MLETVAAVPGMVGGMLLH KS+R+FEHSG WIKALL
Sbjct: 159 YSHRYIFPGMTLALQKTIWMQSNDMLETVAAVPGMVGGMLLHLKSIRKFEHSGSWIKALL 218

Query: 115 EEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 174
           EEAENERMHLMT ME+ KPKWYER LV  VQG+F N++ + Y++SP+ AHR+VGYLEEEA
Sbjct: 219 EEAENERMHLMTMMELVKPKWYERLLVMLVQGIF-NSFLVCYVMSPRLAHRVVGYLEEEA 277

Query: 175 IHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           IHSYTEFLK++D G IENV APAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASD
Sbjct: 278 IHSYTEFLKDIDDGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASD 337

Query: 235 IHYQGRQLRESPAPLGYH 252
           I  QG++LRE+ AP+GYH
Sbjct: 338 IRNQGKELREAGAPIGYH 355


>gi|208436648|gb|ACI28870.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 199

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/199 (76%), Positives = 175/199 (87%)

Query: 28  PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 87
           PWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+LETVAAVP
Sbjct: 1   PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 60

Query: 88  GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 147
           GMVGGMLLHC+S RRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERA+VFAVQGV
Sbjct: 61  GMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGV 120

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 207
           FFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA DYWRLP 
Sbjct: 121 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 180

Query: 208 NSTLKDVVLVVRADEAHHR 226
            STL+DVV V+RADEAHHR
Sbjct: 181 ESTLRDVVEVIRADEAHHR 199


>gi|225639906|gb|ABZ81228.2| mitochondrial alternative oxidase 1b [Daucus carota]
          Length = 170

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 153/170 (90%), Positives = 164/170 (96%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYFL YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLTYLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           WR+PPNSTL+DVV+VVRADEAHHRDVNH+ASDIHYQG +L+ESPAPLGYH
Sbjct: 121 WRMPPNSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHELKESPAPLGYH 170


>gi|297599105|ref|NP_001046676.2| Os02g0318100 [Oryza sativa Japonica Group]
 gi|255670840|dbj|BAF08590.2| Os02g0318100 [Oryza sativa Japonica Group]
          Length = 192

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 167/183 (91%)

Query: 70  QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           QRRYGCRAMMLETVAAVPGMV G +LH +SLRRFEHSGGWI+ALLEEAENERMHLMTFME
Sbjct: 10  QRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69

Query: 130 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 189
           V++P+WYERALV AVQG FFNAY   YL+SP+FAHR+VGYLEEEA+HSYTEFL++LD G 
Sbjct: 70  VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129

Query: 190 IENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
           I++VPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG  LRE  APL
Sbjct: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189

Query: 250 GYH 252
           GYH
Sbjct: 190 GYH 192


>gi|302797945|ref|XP_002980733.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
 gi|300151739|gb|EFJ18384.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
          Length = 264

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 182/229 (79%), Gaps = 2/229 (0%)

Query: 23  WNCFRPWE--AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 80
           W  F+P E    EA+ SID+ KH  P  FSD+ A   V +LR+PTDL F++RY CRA ML
Sbjct: 5   WRAFQPSENRIIEAEGSIDVNKHRNPENFSDQFARLAVMALRFPTDLLFRQRYICRAAML 64

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ET++ VPGMVGGM+LHCKSLRR EHSGGWIKAL+EEAENERMHLMTFME++KP W ERAL
Sbjct: 65  ETISGVPGMVGGMVLHCKSLRRVEHSGGWIKALMEEAENERMHLMTFMELSKPSWQERAL 124

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 200
           VF  QG+F NAYFL Y++SP+FAHRM GY+ EE I SYT+ + ++D G + N PAP +A 
Sbjct: 125 VFTAQGMFMNAYFLLYVVSPRFAHRMAGYIREETIQSYTQLINDIDDGKVPNAPAPDLAI 184

Query: 201 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
           DYWRLP ++TL+DVV+V+RADE HHR++NH+A+D++ QG  L+E+PA +
Sbjct: 185 DYWRLPMDATLRDVVMVIRADEIHHREINHFAADVYMQGHTLKEAPADM 233


>gi|294463331|gb|ADE77201.1| unknown [Picea sitchensis]
          Length = 175

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 151/175 (86%), Positives = 163/175 (93%)

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           MMLETVAAVPGMVGGMLLHCKSLR+F+HS GWIKALLEEAENERMHLMTFMEVA+PKWYE
Sbjct: 1   MMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVAQPKWYE 60

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 197
           +ALVF VQGVFFNAYFL Y+ SPK AHR+VGYLEEEAIHSYTEF+KELDKG I NVPAPA
Sbjct: 61  KALVFTVQGVFFNAYFLMYIFSPKLAHRIVGYLEEEAIHSYTEFIKELDKGTIPNVPAPA 120

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           IA DYWRLP +STL+DVVLVVRADEAHHRDVNH+ASDIHYQG+ L E+ APLGYH
Sbjct: 121 IAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGKDLNEAAAPLGYH 175


>gi|302790461|ref|XP_002976998.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
 gi|300155476|gb|EFJ22108.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
          Length = 264

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 180/229 (78%), Gaps = 2/229 (0%)

Query: 23  WNCFRPWE--AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 80
           W  F+P E    EA+ SID+ KH  P  FSD+ A   V +LR PTDL F++RY CRA ML
Sbjct: 5   WRAFQPSENRIIEAEASIDVNKHRNPENFSDQFARLAVMALRSPTDLLFRQRYICRAAML 64

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ET++ VPGMVGGM+LHCKSLRR EHSGGWIKAL+EEAENERMHLMTFME++KP W ERAL
Sbjct: 65  ETISGVPGMVGGMVLHCKSLRRVEHSGGWIKALMEEAENERMHLMTFMELSKPSWQERAL 124

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 200
           VF  QG+F NAYFL Y++SP+FAHRM GY+ EE I SYT+ + ++D G + N  AP +A 
Sbjct: 125 VFTAQGMFMNAYFLLYVVSPRFAHRMAGYIREETIQSYTQLINDIDDGKVPNASAPDLAI 184

Query: 201 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
           DYWRLP ++TL+DVV+V+RADE HHR++NH+A+D++ QG  L+E+PA +
Sbjct: 185 DYWRLPIDATLRDVVMVIRADEIHHREINHFAADVYMQGHTLKEAPADM 233


>gi|125583366|gb|EAZ24297.1| hypothetical protein OsJ_08049 [Oryza sativa Japonica Group]
          Length = 175

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/175 (83%), Positives = 162/175 (92%)

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           MMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENERMHLMTFMEVAKP+WYE
Sbjct: 1   MMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYE 60

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 197
           RALV AVQGVFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ G IENVPAP 
Sbjct: 61  RALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPP 120

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L++ PAPL YH
Sbjct: 121 IAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 175


>gi|433335543|gb|AGB34165.1| mitochondrial alternative oxidase 2, partial [Olea europaea subsp.
           europaea]
          Length = 169

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 155/169 (91%)

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           AAVPGMVGGMLLH +SLR+FE SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLT 60

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
           VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G IENVPAPAIA DYW
Sbjct: 61  VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW 120

Query: 204 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
           RLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+QG++LRE+PAP+GYH
Sbjct: 121 RLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQGKELREAPAPVGYH 169


>gi|449016571|dbj|BAM79973.1| mitochondrial alternative oxidase [Cyanidioschyzon merolae strain
           10D]
          Length = 383

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/244 (59%), Positives = 176/244 (72%), Gaps = 3/244 (1%)

Query: 5   YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWP 64
           Y  V       D    WKW+ F P   Y+ +L++DLK+H  PT FSD+ A +TVK LR+ 
Sbjct: 127 YQPVRDAPPKSDPNYPWKWHSFLPEHTYKPNLNVDLKRHVQPTGFSDRFAYYTVKFLRFF 186

Query: 65  TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
            D FFQRRYG RA++LETVAAVPGMVGGM+LH + LRRF  SGGWI+ LLEEAENERMHL
Sbjct: 187 ADAFFQRRYGHRAVVLETVAAVPGMVGGMMLHLQCLRRFRQSGGWIRVLLEEAENERMHL 246

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           M +M +A+P+  ERALV   Q  FF+ Y L Y ISPK AHR+VGYLEEEAI SYTE+LK+
Sbjct: 247 MVYMSIAQPRALERALVILAQAGFFSFYTLLYTISPKTAHRLVGYLEEEAIVSYTEYLKD 306

Query: 185 LDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRE 244
           +D G I N+PAP IA DYW+L PN+ L+DVVL  RADEAHHRDVNH  +++    +  R 
Sbjct: 307 IDDGRIPNIPAPPIAIDYWQLDPNARLRDVVLATRADEAHHRDVNHLRANLI---KAHRG 363

Query: 245 SPAP 248
            PAP
Sbjct: 364 DPAP 367


>gi|125583367|gb|EAZ24298.1| hypothetical protein OsJ_08050 [Oryza sativa Japonica Group]
          Length = 325

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/225 (66%), Positives = 168/225 (74%), Gaps = 16/225 (7%)

Query: 28  PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 87
           PWE Y  D +IDLKKHH P    DK+A WTVK+LR PTD+FF                VP
Sbjct: 117 PWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFPEE-----------VRVP 165

Query: 88  GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 147
               G              GGWI+ALLEEAENERMHLMTFMEVAKP+WYERALV AVQGV
Sbjct: 166 RDDAGDGGRGCRG-----CGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGV 220

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 207
           FFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ G IENVPAP IA DYWRLP 
Sbjct: 221 FFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPA 280

Query: 208 NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
            +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L++ PAPL YH
Sbjct: 281 GATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 325


>gi|33087083|gb|AAP92755.1| alternative oxidase 2 [Solanum lycopersicum]
          Length = 173

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 134/173 (77%), Positives = 156/173 (90%)

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LETVA VPGMVGGMLLH +SLR+FEHSGGWIKALLEEAENERMHLMT +E+ +PKWYER 
Sbjct: 1   LETVAGVPGMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVELVQPKWYERL 60

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 199
           LV AVQGVFFN Y + YL+SPK AHR+VGYLEEEAIHSYT +L ++D+G IENVPAPAIA
Sbjct: 61  LVIAVQGVFFNFYSVLYLLSPKLAHRVVGYLEEEAIHSYTLYLNDIDRGEIENVPAPAIA 120

Query: 200 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
            DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIHYQG++L+E+ AP+GYH
Sbjct: 121 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHYQGKKLQEAAAPIGYH 173


>gi|170674871|gb|ACB30186.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 147

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 138/147 (93%), Positives = 140/147 (95%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEVAKPKWYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPKWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQG FFN YFLGYLISPKFAHR+VGYLEEEAIHSYTEFLKELD GNIENVPAPAIA DY
Sbjct: 61  TVQGAFFNIYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLPPNSTLKDVV VVRADEAHHRDVN
Sbjct: 121 WRLPPNSTLKDVVQVVRADEAHHRDVN 147


>gi|452821862|gb|EME28887.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 355

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 173/239 (72%), Gaps = 5/239 (2%)

Query: 14  NKDDGSE---WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ 70
           N D  +E   WKW  F P   Y+ +L +DL +HH P  F DK+A   VK LR   D FF+
Sbjct: 98  NLDKSTEDYPWKWRSFLPEHTYKPNLKVDLTRHHDPIDFRDKVAQKVVKFLRVFADAFFR 157

Query: 71  RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 130
           +RYG RA++LETVAAVPGMVGGML H +SLRRF+ SGGWI+ LLEEAENERMHLMTFM +
Sbjct: 158 KRYGHRAVVLETVAAVPGMVGGMLQHLQSLRRFKPSGGWIRVLLEEAENERMHLMTFMAI 217

Query: 131 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 190
           AKP   ERALV   QG FF  Y   Y++SPK AHR+VGYLEEEAI SYT++L+E+DKG  
Sbjct: 218 AKPTILERALVLLTQGGFFAFYAFIYILSPKTAHRIVGYLEEEAIISYTQYLQEIDKGTH 277

Query: 191 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
            N+PAP IA DYW++   + L+DVVL VRADEAHHRDVNH  +++ Y+ R     PAP+
Sbjct: 278 ANIPAPEIAIDYWQMDKGARLRDVVLAVRADEAHHRDVNHLKANLLYKKRY--SEPAPV 334


>gi|452823408|gb|EME30419.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 364

 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 173/236 (73%), Gaps = 2/236 (0%)

Query: 15  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 74
           +D    WKW  F P   Y+ +LSIDL++HH P  F D++AL  VK LR+  D FFQ+RYG
Sbjct: 111 RDPKYPWKWRSFLPEHTYKPNLSIDLQRHHTPLDFRDRVALGIVKFLRFFADAFFQKRYG 170

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            RA++LETVAAVPGMVGGML H + LRRF  SGGWI+ LL+EAENERMHL+TFM +AKP 
Sbjct: 171 HRAVVLETVAAVPGMVGGMLTHFRCLRRFAPSGGWIRVLLDEAENERMHLVTFMSIAKPN 230

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 194
           ++ER LV   QG FF  Y + Y++SPK AHR+VGYLEEEAI SYTE+LK +D G   N+P
Sbjct: 231 YFERLLVLITQGGFFAFYTMIYILSPKTAHRIVGYLEEEAIISYTEYLKGIDSGLHANIP 290

Query: 195 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 250
           AP IA DYW+L  ++ L+DVVL VRADEA+HRDVNH  +++ Y      + PAPL 
Sbjct: 291 APQIAIDYWQLDSDARLRDVVLAVRADEANHRDVNHLKANLLYTKHG--DEPAPLS 344


>gi|190710537|gb|ACE95099.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 148

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/143 (95%), Positives = 138/143 (96%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
           A QGVFFNAYFLGYLISPKFAHRMVGYLEE  IHSYTEFLKELDKGNIENVPAPAIATDY
Sbjct: 61  AXQGVFFNAYFLGYLISPKFAHRMVGYLEEXXIHSYTEFLKELDKGNIENVPAPAIATDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHH 225
           WRLPPNSTLKDVVLVV  +EAHH
Sbjct: 121 WRLPPNSTLKDVVLVVXTNEAHH 143


>gi|357490779|ref|XP_003615677.1| Alternative oxidase [Medicago truncatula]
 gi|355517012|gb|AES98635.1| Alternative oxidase [Medicago truncatula]
          Length = 231

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 160/181 (88%)

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
           RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+H+GGWIKALLEEAENERMHLMT +E+ 
Sbjct: 51  RYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALLEEAENERMHLMTMVELV 110

Query: 132 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE 191
           KP W+ER LV   QGVFFN +F+ Y++SPK AHR VGYLEEEA+ SYT++L  ++ G +E
Sbjct: 111 KPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQYLNAIESGKVE 170

Query: 192 NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 251
           NVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG++L+E+PAP+GY
Sbjct: 171 NVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGY 230

Query: 252 H 252
           H
Sbjct: 231 H 231


>gi|170674869|gb|ACB30185.1| mitochondrial alternative oxidase 1a [Hypericum perforatum]
          Length = 147

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 140/147 (95%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRF HS GWIKALLEEAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFGHSAGWIKALLEEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYFL YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLTYLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WR+PPNSTL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRMPPNSTLRDVVMVVRADEAHHRDVN 147


>gi|257481048|gb|ACV60633.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481052|gb|ACV60635.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481056|gb|ACV60637.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481058|gb|ACV60638.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  277 bits (708), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 139/147 (94%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP +STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|257481046|gb|ACV60632.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 139/147 (94%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWI+ LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIRTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP +STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|257481044|gb|ACV60631.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP +STL+DVV+VVRA EAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRAGEAHHRDVN 147


>gi|257481054|gb|ACV60636.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 137/147 (93%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPA AIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPASAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP +STL+DVV+V RADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVARADEAHHRDVN 147


>gi|408797922|gb|AFU92145.1| mitochondrial alternative oxidase 1, partial [Araucaria
           angustifolia]
          Length = 147

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 126/147 (85%), Positives = 139/147 (94%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLR+F+HSGGWIKALLEEAENERMHLMTFMEVAKP+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNAYF+ Y+ISPK AHR+VGYLEEEA HSYTEFLKELD GNI NVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFILYMISPKLAHRIVGYLEEEATHSYTEFLKELDDGNIPNVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           W+LP +STL+DVV++++ADEAHHRDVN
Sbjct: 121 WKLPKDSTLRDVVMIIKADEAHHRDVN 147


>gi|257481050|gb|ACV60634.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 138/147 (93%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFF+AYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPA A DY
Sbjct: 61  TVQGVFFSAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPANAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP +STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|2811176|gb|AAB97839.1| alternative oxidase, partial [Zea mays]
          Length = 149

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 138/149 (92%)

Query: 77  AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 136
           AMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVAKP+WY
Sbjct: 1   AMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWY 60

Query: 137 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 196
           ERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTE+LK+L+ G IE  PAP
Sbjct: 61  ERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIEKRPAP 120

Query: 197 AIATDYWRLPPNSTLKDVVLVVRADEAHH 225
           AIA DYWRLP N+TLKDVV VVRADEAHH
Sbjct: 121 AIAIDYWRLPANATLKDVVTVVRADEAHH 149


>gi|208436650|gb|ACI28871.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
 gi|208436658|gb|ACI28875.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 147

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 137/147 (93%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVF 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
           AVQG+F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DY
Sbjct: 61  AVQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRL P+STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLAPDSTLRDVVMVVRADEAHHRDVN 147


>gi|14599476|gb|AAK70936.1| alternative oxidase 1b [Mangifera indica]
          Length = 144

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 134/144 (93%)

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LETVAAVPG VGGMLLHCKSLR+FEHSGGWIK L EEAENERMHLMTFMEVAKP+WYERA
Sbjct: 1   LETVAAVPGTVGGMLLHCKSLRKFEHSGGWIKVLTEEAENERMHLMTFMEVAKPRWYERA 60

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 199
           L+ AVQGVFFN Y LGYLISPKFAHR+VGYLEEEAI SYTEFLKELDKGNIENVPAPAIA
Sbjct: 61  LILAVQGVFFNVYMLGYLISPKFAHRVVGYLEEEAILSYTEFLKELDKGNIENVPAPAIA 120

Query: 200 TDYWRLPPNSTLKDVVLVVRADEA 223
            DYWRLPP STL+DVV+VVRADE 
Sbjct: 121 IDYWRLPPESTLRDVVIVVRADEC 144


>gi|208436646|gb|ACI28869.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/143 (86%), Positives = 133/143 (93%)

Query: 87  PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 146
           PGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVFAVQG
Sbjct: 1   PGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFAVQG 60

Query: 147 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLP 206
           +F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DYWRL 
Sbjct: 61  IFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLA 120

Query: 207 PNSTLKDVVLVVRADEAHHRDVN 229
           P+STL+DVV+VVRADEAHHRDVN
Sbjct: 121 PDSTLRDVVMVVRADEAHHRDVN 143


>gi|257481062|gb|ACV60640.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 137/144 (95%)

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           AAVPGMVGGMLLHCKSLR+F+HSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 
Sbjct: 1   AAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFT 60

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
           VQG+FFNAYFL Y++SPK AHR+ GYLEEEAIHSYTEFLKELDKGNI NVPAPAIA DYW
Sbjct: 61  VQGIFFNAYFLMYILSPKLAHRVTGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYW 120

Query: 204 RLPPNSTLKDVVLVVRADEAHHRD 227
           RLP +STL+DVV+VVRADEAHHR+
Sbjct: 121 RLPKDSTLRDVVVVVRADEAHHRE 144


>gi|208436642|gb|ACI28867.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 122/142 (85%), Positives = 132/142 (92%)

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           AAVPGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVFA
Sbjct: 1   AAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFA 60

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
           VQG+F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DYW
Sbjct: 61  VQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYW 120

Query: 204 RLPPNSTLKDVVLVVRADEAHH 225
           RL P+STL+DVV+VVRADEAHH
Sbjct: 121 RLAPDSTLRDVVMVVRADEAHH 142


>gi|190710539|gb|ACE95100.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 147

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 135/147 (91%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV 
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP ++TLKDV+ V+RADEAHHRDVN
Sbjct: 121 WRLPKDATLKDVITVIRADEAHHRDVN 147


>gi|37955176|gb|AAP76379.1| alternative oxidase [Capsicum annuum]
          Length = 135

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/135 (91%), Positives = 129/135 (95%)

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF
Sbjct: 1   MVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 60

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 208
           FNAYF+ Y++SPK AHR+VGYLEEEAIHSYTEFLKELD GNIENVPAPAIA DYWRLP +
Sbjct: 61  FNAYFVTYILSPKLAHRIVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLPKD 120

Query: 209 STLKDVVLVVRADEA 223
           STL+DVVLVVRADEA
Sbjct: 121 STLRDVVLVVRADEA 135


>gi|336451471|ref|ZP_08621909.1| Alternative oxidase [Idiomarina sp. A28L]
 gi|336281842|gb|EGN75114.1| Alternative oxidase [Idiomarina sp. A28L]
          Length = 210

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 149/193 (77%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KHH P   SD++A  TV+ LR+  DLFF  RYG RA++LETVAAVPGMVGG + H  SLR
Sbjct: 10  KHHKPQGISDRIAYGTVRFLRFFADLFFSGRYGNRAVVLETVAAVPGMVGGAIQHLHSLR 69

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           R ++  GWI  LLEEAENERMHL+TF+EVAKP W ER LV   QG+F+NA+F+ YL S K
Sbjct: 70  RMKNDDGWIHTLLEEAENERMHLLTFIEVAKPNWLERTLVIIAQGIFYNAFFVLYLFSSK 129

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHR+VGYLEEEA++SYTE+L  +D G  ENVPAP IA DYW+LP ++ L++V++ VRAD
Sbjct: 130 TAHRVVGYLEEEAVYSYTEYLAGVDSGKYENVPAPQIAIDYWQLPEDARLREVIIAVRAD 189

Query: 222 EAHHRDVNHYASD 234
           EA HRDVNH  +D
Sbjct: 190 EAKHRDVNHGFAD 202


>gi|433335539|gb|AGB34163.1| mitochondrial alternative oxidase 1b, partial [Olea europaea subsp.
           europaea]
          Length = 143

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/143 (85%), Positives = 130/143 (90%)

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           AAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV + +W ERALVF 
Sbjct: 1   AAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVTQSRWNERALVFT 60

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
           VQGV FNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DYW
Sbjct: 61  VQGVCFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDYW 120

Query: 204 RLPPNSTLKDVVLVVRADEAHHR 226
            LP +STL+DVV+VVRADEAHHR
Sbjct: 121 CLPADSTLRDVVMVVRADEAHHR 143


>gi|297789037|ref|XP_002862531.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297308108|gb|EFH38789.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 136/265 (51%), Positives = 164/265 (61%), Gaps = 43/265 (16%)

Query: 2   IVSYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
           + SYWG+E  K  + + DGS+W WNCF PWE Y+A+LSIDLKKHH P            +
Sbjct: 99  VPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPN-----------R 147

Query: 60  SLRWPTDLF--FQRRYGCRAM----------MLETVAAVPGMVGGMLLHCKSLRRFEHSG 107
             R P      +  RY    M          MLETVAAVPGMVGGMLLH KS+R+FEHSG
Sbjct: 148 QNRLPDSQAPPYSHRYIFPGMTLTIWMQSNDMLETVAAVPGMVGGMLLHLKSIRKFEHSG 207

Query: 108 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 167
           GWIKALLEEAENERMHLMT ME+ KPKWYER LV  VQG+FFN++ + Y++SP+ AHR+ 
Sbjct: 208 GWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFLVCYVMSPRLAHRIS 267

Query: 168 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 227
                               G    +P P +             KDVV V+RADEAHHRD
Sbjct: 268 TM------------------GRSRMLPRPRLLLIIGDCLKMLRWKDVVTVIRADEAHHRD 309

Query: 228 VNHYASDIHYQGRQLRESPAPLGYH 252
           VNH+ASDI  QG++LRE+ AP+GYH
Sbjct: 310 VNHFASDIRNQGKELREAGAPIGYH 334


>gi|126572031|gb|ABO21612.1| mitochondrial alternative oxidase [Cucurbita pepo]
          Length = 147

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 134/147 (91%)

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVAAVPGMVGGMLLH KSLRRF+HSGGWIKALLEEAENERMHLMT +E+ +PKWYER LV
Sbjct: 1   TVAAVPGMVGGMLLHLKSLRRFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERMLV 60

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 201
             VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D+G IENVPAPAIA D
Sbjct: 61  ITVQGVFFNAFFVLYLMSPKLAHRVVGYLEEEAIHSYTEYLKDIDEGKIENVPAPAIAID 120

Query: 202 YWRLPPNSTLKDVVLVVRADEAHHRDV 228
           YWRLP ++ LKDV+ V+RADEAHHRDV
Sbjct: 121 YWRLPKDARLKDVITVIRADEAHHRDV 147


>gi|257481060|gb|ACV60639.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 135/144 (93%)

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           AAVPGMVG +LLHCKSLR+F+HSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  
Sbjct: 1   AAVPGMVGAILLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVST 60

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
           VQG+FFNAYFL Y++SPK AHR+ GYLEEEAI+SYTEFLKELDKGNI NVPAPAIA DYW
Sbjct: 61  VQGIFFNAYFLMYILSPKLAHRITGYLEEEAIYSYTEFLKELDKGNIPNVPAPAIAIDYW 120

Query: 204 RLPPNSTLKDVVLVVRADEAHHRD 227
           RLP ++TL+DVV+VVRADEAHHR+
Sbjct: 121 RLPKDATLRDVVVVVRADEAHHRE 144


>gi|399545055|ref|YP_006558363.1| alternative oxidase [Marinobacter sp. BSs20148]
 gi|399160387|gb|AFP30950.1| Alternative oxidase [Marinobacter sp. BSs20148]
          Length = 215

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 150/195 (76%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L KHH P+ FSD++A    + LR+  DLFF +RYG RA++LETVAAVPGMVGGM+ H +S
Sbjct: 17  LSKHHTPSGFSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRS 76

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LRR E +  WI  LLEEAENERMHLMTF+++A+P + ER L+   QG+FF ++   Y++S
Sbjct: 77  LRRMEDNREWIHTLLEEAENERMHLMTFVQIAQPSFLERVLILLAQGIFFTSFLFLYIVS 136

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
            + AHR+VGY EEEA++SY E+L E+D G +ENV AP IA DYW+LP ++TL+DV++VVR
Sbjct: 137 GRTAHRLVGYFEEEAVYSYGEYLAEVDSGRLENVAAPQIAIDYWKLPADATLRDVIIVVR 196

Query: 220 ADEAHHRDVNHYASD 234
            DEA HRDVNH  +D
Sbjct: 197 LDEAGHRDVNHRFAD 211


>gi|208436654|gb|ACI28873.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 142

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 129/142 (90%)

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
           AVPGMVGGMLLHC+S RRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERA+VFAV
Sbjct: 1   AVPGMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAV 60

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 204
           QGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA DYWR
Sbjct: 61  QGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWR 120

Query: 205 LPPNSTLKDVVLVVRADEAHHR 226
           LP  STL+DVV V+RADEAHHR
Sbjct: 121 LPAESTLRDVVEVIRADEAHHR 142


>gi|149200905|ref|ZP_01877880.1| putative oxidase [Roseovarius sp. TM1035]
 gi|149145238|gb|EDM33264.1| putative oxidase [Roseovarius sp. TM1035]
          Length = 217

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/215 (54%), Positives = 155/215 (72%)

Query: 26  FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAA 85
            RP   +E D +  L+ HH+P    D++AL  VK +R   D FF +RYG RA++LETVAA
Sbjct: 1   MRPERQFETDETATLEVHHSPRDIHDRIALRIVKIMRVFADAFFSKRYGHRAVVLETVAA 60

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGG+L H KSLR      GWI+ LL+EAENERMHLMTF+++A+P   ER L+   Q
Sbjct: 61  VPGMVGGLLQHLKSLRHIREDQGWIRELLDEAENERMHLMTFVQIAQPSRGERWLIMIAQ 120

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
            +F+N +F  YL++P+ AHR+VGYLEEEA+ SYT++L E+D G  +NVPAP IA DYW+L
Sbjct: 121 AIFYNVFFFTYLLAPRTAHRIVGYLEEEAVVSYTQYLAEIDAGRQDNVPAPQIAIDYWKL 180

Query: 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
             ++ L+DVV+ VRADEAHHRD NH  ++   +GR
Sbjct: 181 SQDARLRDVVIAVRADEAHHRDTNHGFANQIMEGR 215


>gi|257481064|gb|ACV60641.1| mitochondrial alternative oxidase 2 [Pinus pinea]
          Length = 147

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 136/147 (92%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ +PKW+ER LV 
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVQPKWHERLLVL 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
           AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHS+TE+LK++D+G IENVPAPAI+ DY
Sbjct: 61  AVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIHSHTEYLKDIDRGLIENVPAPAISIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP ++ L+DV+LV+RADEAHHRDVN
Sbjct: 121 WRLPQDAKLRDVILVIRADEAHHRDVN 147


>gi|387130678|ref|YP_006293568.1| oxidase [Methylophaga sp. JAM7]
 gi|386271967|gb|AFJ02881.1| putative oxidase [Methylophaga sp. JAM7]
          Length = 206

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 149/200 (74%), Gaps = 1/200 (0%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L  H+ P   SD++AL  VK +R+  D FF  RYG RA++LETVAAVPGMVGG L H +S
Sbjct: 7   LHSHYQPQCLSDRIALRVVKFMRFFADAFFSGRYGHRAVVLETVAAVPGMVGGALQHLRS 66

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LRR +   GWI+ LL+EAENERMHLMTF+ +AKP W ER ++   QGVF+N +FL YL S
Sbjct: 67  LRRMQDDEGWIRTLLDEAENERMHLMTFIHIAKPSWLERLIIIIAQGVFYNLFFLLYLFS 126

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
            K AHR+VGYLEEEA++SYTE+L  +D G  +N+PAP IA DYW+LP N+ L+DV+L VR
Sbjct: 127 SKVAHRIVGYLEEEAVYSYTEYLNGVDDGTYDNIPAPQIAIDYWQLPDNARLRDVILKVR 186

Query: 220 ADEAHHRDVNH-YASDIHYQ 238
            DEA HRDVNH +A+ +  Q
Sbjct: 187 DDEAGHRDVNHNFANTLQNQ 206


>gi|254418793|ref|ZP_05032517.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196184970|gb|EDX79946.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 230

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/222 (58%), Positives = 161/222 (72%), Gaps = 4/222 (1%)

Query: 35  DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 94
           DL  D+  HHAP + SD++A   VKSLR+  D FF +RYG RA++LETVAAVPGMVG  L
Sbjct: 5   DLLSDIDVHHAPRSVSDRIAWGFVKSLRFCADTFFAKRYGHRAVVLETVAAVPGMVGATL 64

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H K+LRR     GWI+ L++EAENERMHLMTF+EV +P  +ER +V AVQ +F+  +F 
Sbjct: 65  THLKALRRMSDDRGWIRTLMDEAENERMHLMTFIEVCQPTLFERFIVMAVQWLFYLFFFG 124

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 214
            YL+SP+ AHR+VGY EEEA+ SYT +L E+D+G  EN PAP IA DYW LP ++TL+DV
Sbjct: 125 LYLVSPRTAHRVVGYFEEEAVISYTHYLAEIDEGRSENAPAPKIARDYWGLPASATLRDV 184

Query: 215 VLVVRADEAHHRDVNHYASDIHYQG--RQLRESPA--PLGYH 252
           VLVVRADEAHHRDVNH  +D    G  + +R  PA  PL  H
Sbjct: 185 VLVVRADEAHHRDVNHGFADELAGGPVKAVRPGPAHVPLQPH 226


>gi|254490126|ref|ZP_05103317.1| Alternative oxidase superfamily [Methylophaga thiooxidans DMS010]
 gi|224464612|gb|EEF80870.1| Alternative oxidase superfamily [Methylophaga thiooxydans DMS010]
          Length = 207

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 145/188 (77%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           HH P+ FSD++AL  VK +R+  D FF  RYG RA++LETVAAVPGMVGG L H +SLRR
Sbjct: 10  HHQPSCFSDRLALRIVKFMRFFADAFFSGRYGHRAVILETVAAVPGMVGGALQHLRSLRR 69

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHL+TF+ +AKP  +ER LV   QGVF+N +FL YL S + 
Sbjct: 70  MKDDDGWIETLLDEAENERMHLLTFIHIAKPNMFERLLVIITQGVFYNLFFLLYLCSSRV 129

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGYLEEEA++SYTE+L  +D G  ENVPAP IA DYW+LP ++ L+DV+L VR DE
Sbjct: 130 AHRIVGYLEEEAVYSYTEYLNGVDNGQYENVPAPQIAIDYWQLPADARLRDVLLKVRDDE 189

Query: 223 AHHRDVNH 230
           A HRDVNH
Sbjct: 190 AKHRDVNH 197


>gi|410620808|ref|ZP_11331666.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
 gi|410159691|dbj|GAC27040.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
          Length = 214

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 149/195 (76%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L KHH P+ FSD++A    K LR+  DLFF +RYG RA++LETVAAVPGMVGGM+ H +S
Sbjct: 17  LSKHHTPSGFSDRLAFRLTKLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMIRHMRS 76

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LRR +     I  LLEEAENERMHL+TF+++A+P ++ER L+   QGVFF ++   Y++S
Sbjct: 77  LRRMKDDREAIHTLLEEAENERMHLLTFVQIAQPSFFERMLILLAQGVFFTSFLFLYVVS 136

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
            + AHR+VGY EEEA++SY+E+L E+D G +ENV AP IA DYW+LP ++TL+DV++ VR
Sbjct: 137 GRTAHRLVGYFEEEAVYSYSEYLAEVDSGRLENVNAPQIAIDYWKLPADATLRDVIIAVR 196

Query: 220 ADEAHHRDVNHYASD 234
            DEA HRDVNH  +D
Sbjct: 197 NDEAGHRDVNHQFAD 211


>gi|208436640|gb|ACI28866.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 143

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/143 (79%), Positives = 129/143 (90%)

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           AAVPGMVGGMLLH +SLR+FE SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLT 60

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
           VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G IENVPAPAIA DYW
Sbjct: 61  VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW 120

Query: 204 RLPPNSTLKDVVLVVRADEAHHR 226
           RLP ++TLKDV+ V+RADEAHHR
Sbjct: 121 RLPKDATLKDVITVIRADEAHHR 143


>gi|393726239|ref|ZP_10346166.1| alternative oxidase [Sphingomonas sp. PAMC 26605]
          Length = 237

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 151/207 (72%), Gaps = 1/207 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           HH P  F+D+ AL   K LR+  D+FF +RYG RA++LETVAAVPGMVG M  H K LR 
Sbjct: 24  HHVPHGFADQFALGFTKLLRFCADIFFAKRYGHRAIVLETVAAVPGMVGAMFTHLKCLRW 83

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
                GWI+ L+EEAENERMHLMTF+E+AKP W+ER ++  VQGVF  A+ L YL+S K 
Sbjct: 84  MRDDQGWIRTLMEEAENERMHLMTFVEIAKPTWFERTVILLVQGVFLIAFSLLYLLSAKT 143

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA+ SYT +L+E+D+G   NVPAPAIA  YW++  ++TL+DVVLVVR DE
Sbjct: 144 AHRVVGYFEEEAVTSYTLYLQEIDEGRSPNVPAPAIARHYWKMADDATLRDVVLVVRDDE 203

Query: 223 AHHRDVNH-YASDIHYQGRQLRESPAP 248
           AHHRDVNH +AS I    R    +P P
Sbjct: 204 AHHRDVNHDFASTIGGLLRDRASAPYP 230


>gi|254455703|ref|ZP_05069132.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082705|gb|EDZ60131.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 222

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 145/192 (75%)

Query: 39  DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 98
           DL+KH+ P   SD++AL   K LR+  D FF+++YG RA++LETVAAVPGMV GML H +
Sbjct: 3   DLEKHYKPQNKSDRIALAFTKFLRYIADTFFKKKYGHRAVVLETVAAVPGMVAGMLTHLR 62

Query: 99  SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 158
           SLR+ E   GWIK LLEEAENERMHLMTF++VAKP   ER ++   Q +F   Y + YL+
Sbjct: 63  SLRKMEDDRGWIKILLEEAENERMHLMTFIQVAKPTSLERFIIIIAQFLFIIMYSIIYLV 122

Query: 159 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 218
           S + AHR+VGY EEEA+ SYTE+LKEL+ G I++ PAP IA DYW LP +STLKDVV VV
Sbjct: 123 SQRTAHRIVGYFEEEAVFSYTEYLKELESGRIDDQPAPKIAIDYWNLPLHSTLKDVVRVV 182

Query: 219 RADEAHHRDVNH 230
           R DEA HRDVNH
Sbjct: 183 RDDEAGHRDVNH 194


>gi|85710461|ref|ZP_01041525.1| putative oxidase [Erythrobacter sp. NAP1]
 gi|85687639|gb|EAQ27644.1| putative oxidase [Erythrobacter sp. NAP1]
          Length = 232

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/198 (58%), Positives = 148/198 (74%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 92
           + +   D+  H AP + SD +A   VK LR+  D FF RRYG RA++LETVAAVPGMVGG
Sbjct: 12  QVNYDADVTSHVAPQSKSDHVAFAFVKLLRFFADTFFARRYGHRAVVLETVAAVPGMVGG 71

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           +L H ++LRR     GWI+ LL+EAENERMHLMTF+E+AKP  +ER L+ +VQ VF+N Y
Sbjct: 72  LLQHLRALRRMRDDEGWIRTLLDEAENERMHLMTFIEIAKPNAFERFLILSVQLVFYNFY 131

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 212
           F  YL++P+ AHR+VGY EEEA+ SYT +LKE++ G  ENVPAP IA DYW+L  ++ L 
Sbjct: 132 FFLYLLAPRTAHRVVGYFEEEAVISYTAYLKEVESGRHENVPAPQIAIDYWQLHSDARLS 191

Query: 213 DVVLVVRADEAHHRDVNH 230
           DV++ VRADEA HRDVNH
Sbjct: 192 DVIIAVRADEAEHRDVNH 209


>gi|254420740|ref|ZP_05034464.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196186917|gb|EDX81893.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 239

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 148/195 (75%), Gaps = 1/195 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           HH P  FSD+ AL   K LR+  D FF +RYG RA++LETVAAVPGMVG  + H   LRR
Sbjct: 24  HHEPHGFSDRFALGFTKLLRFSADTFFAKRYGHRAIVLETVAAVPGMVGATIQHLTCLRR 83

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ L+EEAENERMHLMTF+EVAKP ++ER ++   Q VF+  +FL YL+S + 
Sbjct: 84  MKDDDGWIRTLMEEAENERMHLMTFIEVAKPTYFERLVIQIAQAVFYVGFFLLYLVSART 143

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA+ SYT +LKE+D+G   NVPAP IA  YW++ P++TL+DVVLVVRADE
Sbjct: 144 AHRVVGYFEEEAVISYTLYLKEIDEGRSPNVPAPEIAKHYWKMAPDATLRDVVLVVRADE 203

Query: 223 AHHRDVNH-YASDIH 236
           AHHRDVNH +AS ++
Sbjct: 204 AHHRDVNHGFASSLN 218


>gi|452753499|ref|ZP_21953223.1| Alternative oxidase [alpha proteobacterium JLT2015]
 gi|451959189|gb|EMD81621.1| Alternative oxidase [alpha proteobacterium JLT2015]
          Length = 229

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 149/199 (74%), Gaps = 1/199 (0%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           IDL  HH P  FSD++A    K+LRW  D FF  RYG RA++LETVAAVPGMVG  + H 
Sbjct: 6   IDLGVHHKPRGFSDRVAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHL 65

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
             LRR     GWIK L++EAENERMHLMTF+E++KP  +ERA++  VQ VF+  +F  YL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTLFERAVIIGVQWVFYLFFFALYL 125

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +S K AHR+VGY EEEA+ SYT +L E+D+G  +NVPAP IA  YW LP ++TL+DVVLV
Sbjct: 126 VSSKTAHRVVGYFEEEAVISYTHYLTEIDEGRSDNVPAPEIAKKYWDLPDSATLRDVVLV 185

Query: 218 VRADEAHHRDVNH-YASDI 235
           VRADEAHHRDVNH YA+++
Sbjct: 186 VRADEAHHRDVNHGYANEL 204


>gi|254452548|ref|ZP_05065985.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198266954|gb|EDY91224.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 217

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 150/203 (73%)

Query: 32  YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 91
           YEA+L+ +   HH P  F D+ AL  VK LR   D FF  RY  RA++LETVAAVPGMVG
Sbjct: 7   YEAELASENMHHHVPQDFRDRFALRLVKFLRVFADKFFAGRYSHRAVVLETVAAVPGMVG 66

Query: 92  GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 151
           G+L H K+LR      GWI+ L+EEA+NERMHLMTF+E+A+P  +ER LV A Q +F+N 
Sbjct: 67  GLLQHLKALRHIRDDQGWIRELIEEADNERMHLMTFIEIAQPSKFERFLVAATQLIFYNF 126

Query: 152 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 211
           YF  YL++P+ AHR+VGYLEEEA+ SYT++L+++D G IEN+ AP IA DYW+L  N+ L
Sbjct: 127 YFFLYLLAPRVAHRVVGYLEEEAVVSYTQYLEQIDAGLIENIAAPQIAIDYWKLSANARL 186

Query: 212 KDVVLVVRADEAHHRDVNHYASD 234
           +DVVLV+R DEA HRD NH  +D
Sbjct: 187 RDVVLVIREDEAGHRDKNHEFAD 209


>gi|87199593|ref|YP_496850.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135274|gb|ABD26016.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 143/193 (74%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           IDL  HH P   SD++A    K+LRW  D FF  RYG RA++LETVAAVPGMVG  + H 
Sbjct: 6   IDLSVHHKPGGLSDRIAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHL 65

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
             LRR     GWIK L++EAENERMHLMTF+E++KP  +ERA++  VQ VF+  +F  YL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTLFERAVIMGVQWVFYLFFFGLYL 125

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +SPK AHR+VGY EEEA+ SYT +L E+D+G   NVPAPAIA  YW LP N+ L+DVVLV
Sbjct: 126 VSPKTAHRVVGYFEEEAVISYTHYLAEIDQGRSANVPAPAIAKRYWGLPDNAMLRDVVLV 185

Query: 218 VRADEAHHRDVNH 230
           VRADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|254436730|ref|ZP_05050224.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
 gi|198252176|gb|EDY76490.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
          Length = 217

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 148/200 (74%)

Query: 31  AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV 90
           AY A+L      HH P  F D+ AL  VK +R   D FF  RYG RA++LETVAAVPGMV
Sbjct: 6   AYAAELDDKNLHHHEPQDFRDRFALRLVKFMRVFADKFFAHRYGHRAVVLETVAAVPGMV 65

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
           GG+L H K+LR+     GWI+ L+EEA+NERMHLMTF+E+A+P  +ER L+ A Q VF+N
Sbjct: 66  GGLLQHLKALRQIRDDQGWIRELIEEADNERMHLMTFIEIAQPSRFERFLIAATQLVFYN 125

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNST 210
            YF  YL++P+ AHR+VGYLEEEA+ SYT++L ++D G +ENVPAP IA DYW+LP  + 
Sbjct: 126 LYFFLYLLAPRVAHRVVGYLEEEAVVSYTQYLAQIDAGAVENVPAPQIAKDYWKLPDGAR 185

Query: 211 LKDVVLVVRADEAHHRDVNH 230
           L++VVLV+R DEA HRD NH
Sbjct: 186 LREVVLVIREDEAGHRDKNH 205


>gi|208436652|gb|ACI28872.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 138

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 125/138 (90%)

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGGM L+C+SLRRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERALVFAVQGVF
Sbjct: 1   MVGGMFLYCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALVFAVQGVF 60

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 208
           FNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA DYWRLP  
Sbjct: 61  FNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAE 120

Query: 209 STLKDVVLVVRADEAHHR 226
           STL+DVV V+RADEAHHR
Sbjct: 121 STLRDVVEVIRADEAHHR 138


>gi|389730180|ref|ZP_10189355.1| alternative oxidase [Rhodanobacter sp. 115]
 gi|388440952|gb|EIL97272.1| alternative oxidase [Rhodanobacter sp. 115]
          Length = 232

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 150/215 (69%)

Query: 20  EWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMM 79
           + K     P  + + +  I L +HH P    D++A   VK LR+  D FF +RYG RA++
Sbjct: 2   DTKRTRISPKRSPQPEEQISLTRHHEPRGARDRIAFGFVKFLRFIADTFFAKRYGHRAVV 61

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LETVAAVPGMVG  L H + LRR     GWI  LL+EAENERMHLMTFM + +P W+ER 
Sbjct: 62  LETVAAVPGMVGATLQHLRCLRRMRDDDGWIYTLLDEAENERMHLMTFMAIIRPTWFERV 121

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 199
           +V  VQG+F+NA+FL YL SP+ AHR+VGY EEEA+ SY  +L ++D G  ENVPAP +A
Sbjct: 122 VVVIVQGIFYNAFFLLYLCSPRTAHRVVGYFEEEAVISYNHYLAQIDSGADENVPAPHVA 181

Query: 200 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
            DYW LP ++ L+DV++++RA+EA HRDVNH  +D
Sbjct: 182 IDYWSLPADARLRDVIVIIRAEEAMHRDVNHGFAD 216


>gi|170674867|gb|ACB30184.1| mitochondrial alternative oxidase 2 [Hypericum perforatum]
          Length = 147

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 129/147 (87%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGMLLH +SLR+FE +GGW+KALLEEAENERMHLMT +E+ +PKWYER LV 
Sbjct: 1   VAAVPGMVGGMLLHLRSLRKFEQTGGWVKALLEEAENERMHLMTMVELVQPKWYERMLVL 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202
            VQG+FFNAYF+ YL+SPK AHR+ GYLEEEAIHSYTE+LK++  G IENV APAIA DY
Sbjct: 61  IVQGLFFNAYFVIYLVSPKLAHRVTGYLEEEAIHSYTEYLKDIRSGKIENVKAPAIAIDY 120

Query: 203 WRLPPNSTLKDVVLVVRADEAHHRDVN 229
           WRLP  +TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRLPKEATLEDVITVIRADEAHHRDVN 147


>gi|148550731|ref|YP_001260170.1| alternative oxidase [Sphingomonas wittichii RW1]
 gi|402825917|ref|ZP_10875159.1| alternative oxidase [Sphingomonas sp. LH128]
 gi|148503150|gb|ABQ71403.1| Alternative oxidase [Sphingomonas wittichii RW1]
 gi|402260473|gb|EJU10594.1| alternative oxidase [Sphingomonas sp. LH128]
          Length = 229

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 143/193 (74%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           IDL  HH  +  SDK+AL   K LRW  D FF +RYG RA++LETVAAVPGMVG  + H 
Sbjct: 6   IDLGVHHKASGLSDKVALGFTKVLRWCADTFFAQRYGHRAVVLETVAAVPGMVGATINHL 65

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
             LRR     GWIK L++EAENERMHLMTF+E++KP W+ERA++  VQ VF+  +F  YL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTWFERAVIIGVQWVFYVFFFALYL 125

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +S K AHR+VGY EEEA+ SYT +L E+D+G   NVPAP IA  YW LP  +TL+DVVLV
Sbjct: 126 LSAKTAHRVVGYFEEEAVISYTHYLAEIDEGRSANVPAPEIAKRYWGLPEEATLRDVVLV 185

Query: 218 VRADEAHHRDVNH 230
           VRADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|395006406|ref|ZP_10390227.1| Alternative oxidase [Acidovorax sp. CF316]
 gi|394315617|gb|EJE52407.1| Alternative oxidase [Acidovorax sp. CF316]
          Length = 221

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 150/206 (72%)

Query: 30  EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGM 89
           + +  D +  L  HH     SD++AL    +LR+  D FF +RYG RA++LETVAAVPGM
Sbjct: 4   DTHTPDFARSLDAHHPAHGLSDRVALAITLALRFFADTFFAKRYGNRAIVLETVAAVPGM 63

Query: 90  VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 149
           VGGML+H + LR      GWI+ LL+EAENERMHLMTF+E+A+P W+ERA++   Q VFF
Sbjct: 64  VGGMLVHLRCLRWMVDDEGWIRTLLDEAENERMHLMTFIEIARPSWFERAVILLTQAVFF 123

Query: 150 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNS 209
             +F  YL+S + AHR+VGY EE+A+ SYT +L E+D+G +ENVPAP IA  YW+LP ++
Sbjct: 124 VCFFALYLVSSRTAHRLVGYFEEQAVVSYTLYLAEIDEGRVENVPAPDIAIAYWKLPADA 183

Query: 210 TLKDVVLVVRADEAHHRDVNHYASDI 235
            L+DVVL VRADEA HRDVNH  +D+
Sbjct: 184 RLRDVVLAVRADEAGHRDVNHGFADV 209


>gi|14599480|gb|AAK70938.1| alternative oxidase 2 [Mangifera indica]
          Length = 144

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 130/144 (90%)

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LETVAAVPGMVGGMLLH KSLR+ E SGGWIKALLEEAENERMHLMT +E+ +PKWYER 
Sbjct: 1   LETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERL 60

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 199
           LV AVQGVFFN++F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK++D G I+N+PAPAIA
Sbjct: 61  LVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIA 120

Query: 200 TDYWRLPPNSTLKDVVLVVRADEA 223
            DYWRLP ++TLKDV+ VVRADEA
Sbjct: 121 IDYWRLPKDATLKDVITVVRADEA 144


>gi|297539819|ref|YP_003675588.1| Alternative oxidase [Methylotenera versatilis 301]
 gi|297259166|gb|ADI31011.1| Alternative oxidase [Methylotenera versatilis 301]
          Length = 212

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 143/193 (74%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           HH P   SD++AL   K LR+  D FF  RYG RA++LETVA VPGMV G L H K++R 
Sbjct: 14  HHTPENLSDRVALRITKILRFFADTFFANRYGHRAVVLETVAGVPGMVAGALQHLKAIRL 73

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLMTF+ +A+P  +ER L+   QG+F+N +FL YLIS K 
Sbjct: 74  MQPDNGWIRKLLDEAENERMHLMTFIHIAQPNRFERGLIMLAQGIFYNLFFLLYLISSKT 133

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA++SYTE+L  +D G  ENVPAP IA DYW+L  ++ L++V++ VR DE
Sbjct: 134 AHRLVGYFEEEAVYSYTEYLAGVDNGTYENVPAPQIAIDYWQLDASARLREVIIAVRNDE 193

Query: 223 AHHRDVNHYASDI 235
           A+HRDVNHY +D+
Sbjct: 194 ANHRDVNHYFADV 206


>gi|170674873|gb|ACB30187.1| mitochondrial alternative oxidase 1c, partial [Hypericum
           perforatum]
          Length = 154

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 128/148 (86%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWGV   +  K+DGS W+WNCFRPWE Y+AD SID+ KHH  TTF  K A WTV+S
Sbjct: 6   VVSSYWGVPPSRATKEDGSPWRWNCFRPWETYKADTSIDVTKHHKATTFMGKFAYWTVQS 65

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KS+RRFEHSGGWIKALLEEAENE
Sbjct: 66  LKFPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHLKSIRRFEHSGGWIKALLEEAENE 125

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVF 148
           RMHLMTF+E+++PKWYERALVFAVQGVF
Sbjct: 126 RMHLMTFLELSQPKWYERALVFAVQGVF 153


>gi|295690408|ref|YP_003594101.1| alternative oxidase [Caulobacter segnis ATCC 21756]
 gi|295432311|gb|ADG11483.1| Alternative oxidase [Caulobacter segnis ATCC 21756]
          Length = 229

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 143/193 (74%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           IDL  HH P   SD +A   VK+LR+  D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 6   IDLDVHHQPKGVSDVIAFGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNHL 65

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           K LRR E   GWIK L++EAENERMHLMTF+EVAKP  +ER +V A Q VF+  +F  YL
Sbjct: 66  KCLRRMEGDKGWIKTLMDEAENERMHLMTFIEVAKPTLFERFVVVAAQWVFYLFFFALYL 125

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           IS K AHR+VGY EEEA+ SYT +L E+D+G   NV AP IA DYW+LP  +TL+DVV V
Sbjct: 126 ISSKTAHRVVGYFEEEAVISYTHYLAEIDEGRSANVAAPQIALDYWKLPTGATLRDVVEV 185

Query: 218 VRADEAHHRDVNH 230
           VRADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|85704383|ref|ZP_01035485.1| putative oxidase [Roseovarius sp. 217]
 gi|85670791|gb|EAQ25650.1| putative oxidase [Roseovarius sp. 217]
          Length = 221

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 151/216 (69%)

Query: 25  CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 84
           C +   +++ D + DL  HH P    D++AL  VK +R   D FF +RYG RA++LETVA
Sbjct: 4   CTKSEMSFQHDDTTDLDVHHTPRDIHDRVALRIVKFMRIFADAFFSKRYGHRAVVLETVA 63

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
           AVPGMVGG+L H KS+R      GWI+ LL+EAENERMHLMTF+ +A+P   ER L+   
Sbjct: 64  AVPGMVGGLLRHLKSIRHIRDDQGWIRELLDEAENERMHLMTFIHIAQPSRAERMLIMVA 123

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 204
           Q +F+N +F  YL +P+ AHR+VGYLEEEA+ SYT++L E+D G  ENV AP IA DYW 
Sbjct: 124 QMIFYNVFFFTYLFAPRTAHRIVGYLEEEAVVSYTQYLAEIDAGGQENVAAPQIAIDYWN 183

Query: 205 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           L  ++ L+DVV+ VR+DEA+HRD NH  ++   +GR
Sbjct: 184 LGADARLRDVVIRVRSDEAYHRDTNHRFANEIMEGR 219


>gi|114571108|ref|YP_757788.1| alternative oxidase [Maricaulis maris MCS10]
 gi|114341570|gb|ABI66850.1| alternative oxidase [Maricaulis maris MCS10]
          Length = 214

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           I L +H  P    D +A   VK LR+  D FF +RYG RA++LETVAAVPGMVGG+L H 
Sbjct: 7   IILDQHRKPEGLGDHIAFGFVKFLRFIADTFFAKRYGHRAVVLETVAAVPGMVGGLLQHL 66

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           K++RR     GWI+ LL+EAENERMHLMTF+E+AKP  +ER ++  VQ +F+N YF  YL
Sbjct: 67  KAIRRIRDDEGWIRTLLDEAENERMHLMTFIEIAKPTLFERIVIMVVQAIFYNCYFFLYL 126

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
            +P+ AHR+VGY EEEA+ SYT++L+ +D G  ENV AP IA DYW LP N+ L++VV+ 
Sbjct: 127 FAPRTAHRVVGYFEEEAVISYTQYLEGIDAGRHENVAAPQIAIDYWNLPANARLREVVIA 186

Query: 218 VRADEAHHRDVNHYASDIHYQGRQLRESPA 247
           VRADEA HRDVNH  +D    GR+ R   A
Sbjct: 187 VRADEAGHRDVNHDFAD--QLGRKPRAQTA 214


>gi|94498336|ref|ZP_01304895.1| Alternative oxidase [Sphingomonas sp. SKA58]
 gi|94422216|gb|EAT07258.1| Alternative oxidase [Sphingomonas sp. SKA58]
          Length = 236

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 150/213 (70%), Gaps = 6/213 (2%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           +DL  HH P    D++AL   K LR   D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 15  VDLTVHHTPRDLRDRIALGFTKVLRLCADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 74

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           + LRR +   GWI+ L+EEAENERMHLMTF+EVA+P  +ER ++  VQ  F+ A+F  YL
Sbjct: 75  RCLRRMQGDNGWIRTLMEEAENERMHLMTFIEVAQPSLFERLVILLVQWAFYLAFFGLYL 134

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +S + AHR+VGY EEEA+ SYT +LKE+D+G   +V AP IA  YW+LP  +TL+DVVLV
Sbjct: 135 VSARTAHRVVGYFEEEAVISYTLYLKEIDEGRSPDVAAPMIARRYWKLPDTATLRDVVLV 194

Query: 218 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 250
           VRADEAHHRDVNH  +D      +L   PAPL 
Sbjct: 195 VRADEAHHRDVNHGFAD------ELAGKPAPLS 221


>gi|395492241|ref|ZP_10423820.1| alternative oxidase [Sphingomonas sp. PAMC 26617]
          Length = 228

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/199 (59%), Positives = 147/199 (73%), Gaps = 1/199 (0%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           IDL  HH P   SD+ AL   + LR+  D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 7   IDLSIHHPPHGGSDRFALAATRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 66

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           + LR+ +   GWI+ L+EEAENERMHLMTF+EV KP  +ER +V  VQ +F+  +F  YL
Sbjct: 67  RCLRQMKPDRGWIRILMEEAENERMHLMTFLEVCKPTLFERLVVLVVQWLFYLGFFALYL 126

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +SPK AHR+VGY EEEA+ SYT +L E+D G   NVPAPAIA  YW L  N+TL+DV+LV
Sbjct: 127 LSPKTAHRLVGYFEEEAVISYTHYLAEIDAGRSANVPAPAIARRYWGLSDNATLRDVILV 186

Query: 218 VRADEAHHRDVNH-YASDI 235
           VRADEAHHRDVNH +A+D+
Sbjct: 187 VRADEAHHRDVNHSFAADL 205


>gi|384500340|gb|EIE90831.1| hypothetical protein RO3G_15542 [Rhizopus delemar RA 99-880]
          Length = 260

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 141/193 (73%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH  P +  DK A +TVK LR   D +F + +  RA+MLET+AAVPGMVG ML H KSLR
Sbjct: 41  KHRVPASLGDKGAYYTVKCLRLLPDTYFGKDHYMRAVMLETIAAVPGMVGAMLRHMKSLR 100

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           R     GWI  LL EAENERMHLMT+M+  KP  ++R +V   QG+FFNAYFL YL+SPK
Sbjct: 101 RMSEDNGWISHLLHEAENERMHLMTWMKCLKPTVWDRLMVLGAQGIFFNAYFLLYLVSPK 160

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHRM GYLEEEA+ SYT FL ++D+G I+N PAP +A +Y+ L P +T++DVVL VRAD
Sbjct: 161 TAHRMCGYLEEEAVISYTHFLNDIDQGIIKNGPAPQVAIEYYNLHPQATIRDVVLAVRAD 220

Query: 222 EAHHRDVNHYASD 234
           EA HRD NHY SD
Sbjct: 221 EAVHRDANHYLSD 233


>gi|289208825|ref|YP_003460891.1| oxidase [Thioalkalivibrio sp. K90mix]
 gi|288944456|gb|ADC72155.1| Alternative oxidase [Thioalkalivibrio sp. K90mix]
          Length = 209

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 141/197 (71%)

Query: 39  DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 98
           DL +HH P  FSD++A      +R   D FF RRYG RA++LETVA VPGMVG  L H +
Sbjct: 8   DLSRHHEPRDFSDRVARAFTSMMRLFADTFFARRYGHRAVVLETVAGVPGMVGATLQHLR 67

Query: 99  SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 158
           SLRR E   GWI+ L+EEAENERMHL+TF+E+A P W ER L+   QG F+  YFL Y+I
Sbjct: 68  SLRRMEDDHGWIRTLMEEAENERMHLLTFIEIASPNWLERLLIILAQGFFYTLYFLIYVI 127

Query: 159 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 218
           SP+ AHR+VGY EEEA+ SYT++L+E++ G IEN+PAP  A  YW LP ++ L DV+  V
Sbjct: 128 SPRTAHRIVGYFEEEAVISYTDYLEEVETGAIENIPAPDRAIQYWDLPEDARLSDVIRAV 187

Query: 219 RADEAHHRDVNHYASDI 235
           R DEA HRDVNH  +D+
Sbjct: 188 REDEAGHRDVNHGFADL 204


>gi|254453559|ref|ZP_05066996.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198267965|gb|EDY92235.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 239

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 155/203 (76%), Gaps = 3/203 (1%)

Query: 32  YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 91
           +E DL   L+ HH P + +D+ AL  VK++R+  D FF  RYG RA++LETVAAVPGMVG
Sbjct: 32  FEPDL---LQVHHVPHSMNDRAALRVVKTMRFFADRFFANRYGHRAVVLETVAAVPGMVG 88

Query: 92  GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 151
           G+L H +++R      GWIK L+EEA+NERMHLMTF+++A+P  +ER L+   Q VF+N 
Sbjct: 89  GLLQHLRAIRHIRDDQGWIKELIEEADNERMHLMTFIQIAQPSRFERTLIMVAQAVFYNL 148

Query: 152 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 211
           YF  YL++PK AHR+VGYLEEEA+ SY+ +L+E+D G +ENV AP IA +YW+LP ++ L
Sbjct: 149 YFFLYLLAPKTAHRVVGYLEEEAVISYSHYLEEIDAGRVENVAAPQIAINYWKLPSDARL 208

Query: 212 KDVVLVVRADEAHHRDVNHYASD 234
           +DVV+VVRADEAHHRD NH+ ++
Sbjct: 209 RDVVVVVRADEAHHRDTNHHFAN 231


>gi|404252627|ref|ZP_10956595.1| alternative oxidase [Sphingomonas sp. PAMC 26621]
          Length = 228

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 147/199 (73%), Gaps = 1/199 (0%)

Query: 38  IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 97
           IDL  HH P   SD+ AL   + LR+  D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 7   IDLSIHHPPHGGSDRFALAATRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 66

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           + LR+ +   GWI+ L+EEAENERMHLMTF+EV KP  +ER +V  VQ +F+  +F  YL
Sbjct: 67  RCLRQMKPDRGWIRILMEEAENERMHLMTFLEVCKPTLFERLVVLVVQWLFYLGFFALYL 126

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +SPK AHR+VGY EEEA+ SY+ +L E+D G   NVPAPAIA  YW L  N+TL+DV+LV
Sbjct: 127 LSPKTAHRLVGYFEEEAVISYSHYLAEIDAGRSANVPAPAIARRYWGLSDNATLRDVILV 186

Query: 218 VRADEAHHRDVNH-YASDI 235
           VRADEAHHRDVNH +A+D+
Sbjct: 187 VRADEAHHRDVNHGFAADL 205


>gi|339502929|ref|YP_004690349.1| alternative oxidase-like protein [Roseobacter litoralis Och 149]
 gi|338756922|gb|AEI93386.1| alternative oxidase-like protein [Roseobacter litoralis Och 149]
          Length = 213

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 144/191 (75%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L  H  P    D+ AL  VK +R   D FF +RYG RA++LETVAAVPGMVGGML H K+
Sbjct: 13  LIHHTPPKDVRDRFALRLVKFMRVFADKFFAKRYGHRAVVLETVAAVPGMVGGMLQHLKA 72

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LRR     GW++ LL+EAENERMHLMTF++VA+P   ER L+ A QGVFFN YF+ YL +
Sbjct: 73  LRRLRDDEGWVRELLDEAENERMHLMTFIKVAEPSRLERYLIIAGQGVFFNLYFVLYLFA 132

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
           P+ AHR+V YLEEEA+ SYT++L+E+D G ++N+ AP IA DYW+LPP++ L++V++ VR
Sbjct: 133 PRTAHRVVAYLEEEAVISYTQYLEEVDAGRVQNIAAPQIAIDYWKLPPDARLREVIIAVR 192

Query: 220 ADEAHHRDVNH 230
           ADEA HRD NH
Sbjct: 193 ADEAGHRDRNH 203


>gi|329902679|ref|ZP_08273233.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548651|gb|EGF33301.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
          Length = 204

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 141/192 (73%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           HH P   SD+ AL   K LR+  D+FF +RYG RA++LETVAAVPGMVGG+L H KSLR 
Sbjct: 10  HHDPRDLSDRFALGFTKFLRFLADVFFAKRYGHRAVVLETVAAVPGMVGGLLQHLKSLRL 69

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GW+  LL+EAENERMHLMTF+++A+P  +ER ++F  Q VF+N YF  YL S K 
Sbjct: 70  IKDDNGWVHTLLDEAENERMHLMTFIQIAQPSGFERLVIFVTQLVFYNLYFFIYLFSAKT 129

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L  +D G  EN+ APAIA  YW L P++ L+DVV+ VRADE
Sbjct: 130 AHRIVGYFEEEAYYSYTEYLAGIDNGEHENIAAPAIAIKYWNLHPDARLRDVVIAVRADE 189

Query: 223 AHHRDVNHYASD 234
           A HRDVNH  +D
Sbjct: 190 AGHRDVNHAYAD 201


>gi|378548284|sp|F4P6T0.1|AOX_BATDJ RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
 gi|328768827|gb|EGF78872.1| hypothetical protein BATDEDRAFT_32033 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 316

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 143/192 (74%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H  P + SD  A   V+ LR+  DLFF+++Y  RA++LETVAAVPGMV GML H  SLR 
Sbjct: 93  HRIPVSISDWTAYGIVRFLRFFADLFFRKQYVHRAVVLETVAAVPGMVAGMLRHLTSLRL 152

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
             H GGWI  LL EAENER+HL+T+M+V +P  +ER LV  VQ +FFN YFL Y++ PK 
Sbjct: 153 MRHDGGWISHLLSEAENERLHLLTWMKVCQPSLFERMLVALVQTLFFNVYFLAYMLFPKT 212

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHRMVGYLEEEAI SYT FL E+D GNI N PAP +A DYW L  ++T++DVVL VRADE
Sbjct: 213 AHRMVGYLEEEAIISYTHFLAEIDAGNIPNGPAPKLAIDYWNLKEDATVRDVVLAVRADE 272

Query: 223 AHHRDVNHYASD 234
           A+HRD+NH+ +D
Sbjct: 273 ANHRDMNHHFAD 284


>gi|110680239|ref|YP_683246.1| alternative oxidase [Roseobacter denitrificans OCh 114]
 gi|109456355|gb|ABG32560.1| alternative oxidase [Roseobacter denitrificans OCh 114]
          Length = 213

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 143/191 (74%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L  H  PT   D+ AL  VK +R   D FF +RYG RA++LETVAAVPGMVGGML H K+
Sbjct: 13  LIHHTPPTDLRDRFALRLVKFMRIFADKFFAKRYGHRAVVLETVAAVPGMVGGMLQHLKA 72

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LRR     GW++ LL+EAENERMHLMTF++VA+P   ER L+ A QGVFFN YFL YL +
Sbjct: 73  LRRLRDDEGWVRELLDEAENERMHLMTFIKVAEPSRLERYLIIAGQGVFFNLYFLLYLFA 132

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
           P+ AHR+V YLEEEA+ SYT++L+E+D G + N+ AP IA DYW+LP ++ L++V++ VR
Sbjct: 133 PRTAHRVVAYLEEEAVISYTQYLEEVDAGRVPNIEAPQIAIDYWKLPADARLREVIVAVR 192

Query: 220 ADEAHHRDVNH 230
           ADEA HRD NH
Sbjct: 193 ADEAGHRDRNH 203


>gi|330813949|ref|YP_004358188.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487044|gb|AEA81449.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 217

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/196 (56%), Positives = 141/196 (71%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L  HH P   SD++A    K LR+  D FF+++YG RA++LETVAAVPGM+ GML H KS
Sbjct: 3   LDSHHKPENISDRIAFGFTKFLRFVADTFFKKKYGHRAVVLETVAAVPGMIAGMLTHLKS 62

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           +R+ E   GWIK LL+EAENERMHLM F+ +AKP   ER ++   Q +F   Y   Y+IS
Sbjct: 63  IRKIEDDKGWIKTLLDEAENERMHLMIFVNIAKPTAMERVIILIAQFIFILMYLFIYIIS 122

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
            + AHR+VGY EEEA++SYTEFL ELD G ++N PAP IA DY+ LP ++TL+DVV+ VR
Sbjct: 123 KRTAHRIVGYFEEEAVYSYTEFLDELDSGKMKNEPAPKIAIDYYSLPLHATLRDVVVRVR 182

Query: 220 ADEAHHRDVNHYASDI 235
            DEA HRDVNH  ++I
Sbjct: 183 EDEAGHRDVNHSYANI 198


>gi|289164721|ref|YP_003454859.1| oxidase [Legionella longbeachae NSW150]
 gi|288857894|emb|CBJ11749.1| putative alternative oxidase (eukaryotic-like) [Legionella
           longbeachae NSW150]
          Length = 228

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 141/192 (73%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H    TFSD+ A   VK  R+  D FFQRRYG RA++LETVAAVPGMVG  LLH + LR+
Sbjct: 5   HKPAKTFSDRFAYGLVKFFRFFADTFFQRRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            ++  GWIK LL+EAENERMHL+TFM +AKP W+ER ++F  Q +F   YFL Y+IS K 
Sbjct: 65  IKNDEGWIKTLLDEAENERMHLITFMYIAKPNWFERFIIFIAQAIFVILYFLMYVISSKT 124

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR VGYLEEEA+ SYT +L+ELD+G+IEN PAP IA  YW L  N+ L+DV+L VR DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGHIENCPAPEIAKSYWGLSSNAQLRDVLLAVRKDE 184

Query: 223 AHHRDVNHYASD 234
             HRDVNH  +D
Sbjct: 185 EDHRDVNHQLAD 196


>gi|381396187|ref|ZP_09921879.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
 gi|379328367|dbj|GAB57012.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
          Length = 217

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/200 (54%), Positives = 146/200 (73%)

Query: 31  AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV 90
           +++ +++  L KHH P   SD+ A    K LR+  D FF +RYG RA++LETVAAVPGMV
Sbjct: 8   SFKKEVADPLSKHHMPAGTSDRFAFRLTKLLRFFADHFFAKRYGHRAVVLETVAAVPGMV 67

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
            GM+ H +SLRR +     I  LLEEAENERMHLMTF+++A+P  +ER L+   QG FF 
Sbjct: 68  AGMVRHMRSLRRMKDDREAIHTLLEEAENERMHLMTFIKIAQPSLFERWLIILAQGFFFA 127

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNST 210
           ++F+ Y++S + AHR+VGY EEEA++SYTE+L  +D G +ENVPAP IA DYW LP ++ 
Sbjct: 128 SFFILYVVSGRTAHRLVGYFEEEAVYSYTEYLAAVDSGLLENVPAPDIAIDYWNLPKDAR 187

Query: 211 LKDVVLVVRADEAHHRDVNH 230
           L+DV++VVR DEA HRD NH
Sbjct: 188 LRDVIIVVRQDEAGHRDANH 207


>gi|270156838|ref|ZP_06185495.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
 gi|269988863|gb|EEZ95117.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
          Length = 503

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 141/192 (73%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H    TFSD+ A   VK  R+  D FFQRRYG RA++LETVAAVPGMVG  LLH + LR+
Sbjct: 5   HKPAKTFSDRFAYGLVKFFRFFADTFFQRRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            ++  GWIK LL+EAENERMHL+TFM +AKP W+ER ++F  Q +F   YFL Y+IS K 
Sbjct: 65  IKNDEGWIKTLLDEAENERMHLITFMYIAKPNWFERFIIFIAQAIFVILYFLMYVISSKT 124

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR VGYLEEEA+ SYT +L+ELD+G+IEN PAP IA  YW L  N+ L+DV+L VR DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGHIENCPAPEIAKSYWGLSSNAQLRDVLLAVRKDE 184

Query: 223 AHHRDVNHYASD 234
             HRDVNH  +D
Sbjct: 185 EDHRDVNHQLAD 196


>gi|387593301|gb|EIJ88325.1| alternative oxidase superfamily protein [Nematocida parisii ERTm3]
 gi|387595986|gb|EIJ93608.1| alternative oxidase superfamily protein [Nematocida parisii ERTm1]
          Length = 232

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 142/199 (71%), Gaps = 1/199 (0%)

Query: 36  LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 95
           + +++ KH     FSD  A  TVK LR   D+ F RRY  RA++LETVAA+PGMVGG++ 
Sbjct: 29  VDVEVGKHLPQKDFSDIFAWRTVKGLRMIADVVFYRRYVHRAIVLETVAAIPGMVGGVIR 88

Query: 96  HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 155
           H KSLR  +     I+ LL EAENERMHLMT+MEVAKP   ER +V  +QGVFFNAY L 
Sbjct: 89  HLKSLRNMKDDSN-IRILLAEAENERMHLMTWMEVAKPLLIERLIVMGLQGVFFNAYLLL 147

Query: 156 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 215
           YLIS + AHR+VGYLEEEAI SYTE +KE++ G I NVPAP IA  YW LP N+TL DV 
Sbjct: 148 YLISKRTAHRLVGYLEEEAIISYTEMVKEIEAGIIPNVPAPEIAKKYWNLPSNATLLDVT 207

Query: 216 LVVRADEAHHRDVNHYASD 234
           L +RADEA HRD NH  ++
Sbjct: 208 LAIRADEATHRDTNHEIAN 226


>gi|197106479|ref|YP_002131856.1| Alternative oxidase [Phenylobacterium zucineum HLK1]
 gi|196479899|gb|ACG79427.1| Alternative oxidase [Phenylobacterium zucineum HLK1]
          Length = 229

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 144/192 (75%)

Query: 39  DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 98
           DL  HH P   SD++A   VK+LR+  D FF +RYG RA++LETVAAVPGMVG  L H K
Sbjct: 7   DLTVHHKPRGLSDRVAYGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNHLK 66

Query: 99  SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 158
            LRR E   GWIK L++EAENERMHLMTF+EVAKP  +ER +V A Q VF+  +F  YLI
Sbjct: 67  CLRRMEDDRGWIKTLMDEAENERMHLMTFIEVAKPTLFERFVVVAAQWVFYLFFFFLYLI 126

Query: 159 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 218
           SPK AHR+VGY EEEA+ SYT +L E+D+G  ENV AP +A  YW LP ++TL+DVV VV
Sbjct: 127 SPKTAHRVVGYFEEEAVISYTHYLAEIDEGRSENVAAPELAKRYWNLPEDATLRDVVEVV 186

Query: 219 RADEAHHRDVNH 230
           RADEAHHRDVNH
Sbjct: 187 RADEAHHRDVNH 198


>gi|67906549|gb|AAY82655.1| predicted alternative respiratory pathway oxidase [uncultured
           bacterium MedeBAC49C08]
          Length = 213

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 134/193 (69%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH  P   SD+      ++LR   DLFF++RYG RA++LETVAAVPGMV GML H KSLR
Sbjct: 18  KHKYPHGLSDRSGYLITRALRIAADLFFRKRYGHRAVVLETVAAVPGMVAGMLHHFKSLR 77

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
                 G IK LL+EAENERMHLMTF+E++KP  +ER LV + Q VF   YF  Y+    
Sbjct: 78  SMTDDDGIIKELLDEAENERMHLMTFIEISKPTLFERLLVLSAQIVFGTFYFFLYVFFRG 137

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHRM+GY EEEA+ SYTEFL E+DKG IENV AP IA DYW L   +TL+DVV+ VR D
Sbjct: 138 TAHRMIGYFEEEAVTSYTEFLDEIDKGTIENVAAPKIAVDYWNLGNKATLRDVVVAVRND 197

Query: 222 EAHHRDVNHYASD 234
           EA HRD NH  +D
Sbjct: 198 EAGHRDKNHEIAD 210


>gi|77362686|dbj|BAE46391.1| alternative oxidase [Phaseolus vulgaris]
          Length = 151

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 125/151 (82%)

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           MMLETVAAVPGMVGGMLLH  SL +F+HSGGWIKAL+EEAENERMHLMT +E+  PKW E
Sbjct: 1   MMLETVAAVPGMVGGMLLHLXSLXKFQHSGGWIKALMEEAENERMHLMTMVELVXPKWXE 60

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 197
           R LV A QGVFFN +F  Y++SP  AHR+VGY EEEAI SYT++LK +++G  ENVPAPA
Sbjct: 61  RLLVLAXQGVFFNXFFALYILSPXAAHRIVGYXEEEAIXSYTQYLKXIERGAXENVPAPA 120

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228
           IA DYWRLP ++  K V+ V+RADEAHHRDV
Sbjct: 121 IAIDYWRLPKDAXXKXVITVIRADEAHHRDV 151


>gi|74317948|ref|YP_315688.1| oxidase [Thiobacillus denitrificans ATCC 25259]
 gi|74057443|gb|AAZ97883.1| putative oxidase [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 136/195 (69%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L  H  P    D++AL  VK ++   D FF RRYG RA++LET+AAVPGMVG  L H ++
Sbjct: 27  LDVHRPPADLRDRIALGFVKLVKAAADAFFGRRYGHRAVVLETIAAVPGMVGATLQHLRA 86

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LRR +   GWI+ LLEEAENERMHLMTF+ VA+P  +ER LV   Q  F+N YF  YL S
Sbjct: 87  LRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQPTQFERLLVVLAQAFFYNLYFFVYLAS 146

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
           PK AHR+ GYLEEEA+HSYTE+L  +D G   NV AP IA +YW LP ++ L++V++ VR
Sbjct: 147 PKTAHRITGYLEEEAVHSYTEYLARVDGGACTNVAAPGIAIEYWALPADARLREVIVAVR 206

Query: 220 ADEAHHRDVNHYASD 234
            DE  HR+VNH  +D
Sbjct: 207 DDEIRHREVNHAYAD 221


>gi|359786470|ref|ZP_09289605.1| Alternative oxidase [Halomonas sp. GFAJ-1]
 gi|359296320|gb|EHK60573.1| Alternative oxidase [Halomonas sp. GFAJ-1]
          Length = 212

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 148/194 (76%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 100
           + H+ P  FSD++A   V+ +R+  D+FF  RYG RA++LETVAAVPGMVGG + H  +L
Sbjct: 15  QTHYQPRGFSDRIAYRLVRFMRFFADVFFAGRYGHRAVILETVAAVPGMVGGAIQHLHAL 74

Query: 101 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 160
           RR +   GWI+ LL+EAENERMHLMTF+EVAKP  +ER ++   QG+FFN +FL YL S 
Sbjct: 75  RRIKDDDGWIRTLLDEAENERMHLMTFIEVAKPNRFERFIIMLAQGIFFNLFFLLYLCSS 134

Query: 161 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 220
           K AHR+VGYLEEEA++SYTE+L+ +D+G  EN+PAP IA DYW LP ++ L++VV+ VRA
Sbjct: 135 KTAHRVVGYLEEEAVYSYTEYLEGIDRGEYENIPAPQIAIDYWNLPQDARLREVVVAVRA 194

Query: 221 DEAHHRDVNHYASD 234
           DEA HRD NH  +D
Sbjct: 195 DEADHRDTNHDFAD 208


>gi|378754341|gb|EHY64375.1| alternative oxidase superfamily protein [Nematocida sp. 1 ERTm2]
          Length = 232

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 142/200 (71%), Gaps = 1/200 (0%)

Query: 36  LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 95
           + +++ KH     FSD  A  TVK LR   D+ F +RY  RA++LETVAA+PGMVGG++ 
Sbjct: 29  VDVEVGKHLPQRDFSDVFAWRTVKGLRMIADVVFYKRYVHRAIVLETVAAIPGMVGGLIR 88

Query: 96  HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 155
           H KSLR+ E     I+ LL EAENERMHLMT+MEVAKP   ER +V A+QGVFFNAY + 
Sbjct: 89  HLKSLRKMEDDTN-IRVLLAEAENERMHLMTWMEVAKPLLLERLIVMALQGVFFNAYLML 147

Query: 156 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 215
           Y++S K AHR+VGYLEEEAI SYTE ++E+  G I N PAP IA  YW L  ++TL DV 
Sbjct: 148 YIVSAKTAHRLVGYLEEEAIISYTEMVREIQAGIIPNTPAPEIAKKYWNLGEDATLLDVT 207

Query: 216 LVVRADEAHHRDVNHYASDI 235
           L +RADEA HRD NH  +D+
Sbjct: 208 LAIRADEATHRDTNHEIADV 227


>gi|388455982|ref|ZP_10138277.1| oxidase [Fluoribacter dumoffii Tex-KL]
          Length = 220

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 113/200 (56%), Positives = 141/200 (70%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H    T SDK+A   VK  R+  D FFQ+RYG RA++LETVAAVPGMVG  LLH + LR+
Sbjct: 5   HKPAKTISDKIAYGLVKFFRFFADTFFQKRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            ++  GWIK LLEEAENERMHL+TFM +AKP W+ER ++F  Q +F   Y + Y++S K 
Sbjct: 65  IKNDEGWIKTLLEEAENERMHLITFMYIAKPNWFERFIIFVAQALFVVLYLVMYVLSSKT 124

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR VGYLEEEA+ SYT +L+ELD+G IEN PAP IA  YW L  ++ L++V+L VR DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGRIENSPAPDIAKIYWGLASDARLREVLLAVRLDE 184

Query: 223 AHHRDVNHYASDIHYQGRQL 242
             HRDVNH  +D     R L
Sbjct: 185 EEHRDVNHELADKLASERTL 204


>gi|118594227|ref|ZP_01551574.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
 gi|118440005|gb|EAV46632.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
          Length = 589

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 137/195 (70%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           + KH  P   SD +AL+  K LR   D FF +RYG RA++LETVAAVPGMV GM +H K 
Sbjct: 1   MSKHRTPENISDFVALFITKFLRLLADTFFSKRYGHRAVVLETVAAVPGMVAGMWIHLKC 60

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LR+     GWIK LL+EAENERMHLMTF+E+AKP W+ER L+   Q +F++ YF+ Y+  
Sbjct: 61  LRKMTSDRGWIKTLLDEAENERMHLMTFIEIAKPNWFERGLILFAQALFWHFYFILYVFF 120

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
           P+ AHR+VGY EEEA+ SYT +L++++     NV AP IA +YW+L P++ L DV+ VVR
Sbjct: 121 PRTAHRLVGYFEEEAVISYTNYLEQVENDLSLNVAAPQIAINYWKLKPDARLIDVIKVVR 180

Query: 220 ADEAHHRDVNHYASD 234
            DEA H  VNH  +D
Sbjct: 181 DDEAGHAKVNHTLAD 195


>gi|350530260|ref|ZP_08909201.1| hypothetical protein VrotD_04015 [Vibrio rotiferianus DAT722]
          Length = 211

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 139/192 (72%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y + YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSIIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPADAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASD 234
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|90578977|ref|ZP_01234787.1| alternative oxidase [Photobacterium angustum S14]
 gi|90439810|gb|EAS64991.1| alternative oxidase [Photobacterium angustum S14]
          Length = 211

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   T FS+++A    + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HRETTKFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWIK LL EA+NERMHLM F+++AKP W ERALV   Q VF   Y + YL S K 
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWVERALVLLGQAVFICVYSIIYLTSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA  SYTEFL+++D G +ENV AP IA +Y+ L  ++ L+DVVL +R DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYELHDDAKLRDVVLRIREDE 187

Query: 223 AHHRDVNHYASDIHYQGRQL 242
           A HRD NH  +D  YQ + L
Sbjct: 188 AKHRDRNHNFADC-YQNKDL 206


>gi|209694266|ref|YP_002262194.1| hypothetical protein VSAL_I0677 [Aliivibrio salmonicida LFI1238]
 gi|208008217|emb|CAQ78362.1| putative membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 212

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 137/193 (70%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH A T  S+++A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 8   KHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALR 67

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           R +   GWI+ LL EAENERMHLM F+++AKP+W ER LV   QGVF   Y   YL+S K
Sbjct: 68  RMKDDEGWIRELLNEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSFIYLLSSK 127

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHR+VGY EEEA  SYTE+L ++D G++EN  AP IA DY++LP ++ L+DV+L +R D
Sbjct: 128 VAHRVVGYFEEEACKSYTEYLSKIDNGDVENEAAPQIAIDYYQLPNDALLRDVILKIRDD 187

Query: 222 EAHHRDVNHYASD 234
           EA HRD NH  +D
Sbjct: 188 EAKHRDRNHSFAD 200


>gi|269959615|ref|ZP_06173996.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|424047885|ref|ZP_17785441.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
 gi|269835673|gb|EEZ89751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|408883195|gb|EKM21982.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
          Length = 211

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYIALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPADAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASD 234
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|424037571|ref|ZP_17776332.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
 gi|408895390|gb|EKM31796.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
          Length = 211

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPTDAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASD 234
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|444427732|ref|ZP_21223103.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
 gi|444239030|gb|ELU50610.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
          Length = 211

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 142/200 (71%), Gaps = 1/200 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSFIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYYKLPADAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASDIHYQGRQL 242
           A HRD NH  +D  Y+ + L
Sbjct: 188 AGHRDRNHGFAD-DYEDKTL 206


>gi|424032045|ref|ZP_17771466.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
 gi|408876457|gb|EKM15574.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
          Length = 211

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPTDAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASD 234
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|156973270|ref|YP_001444177.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
 gi|388600478|ref|ZP_10158874.1| hypothetical protein VcamD_11319 [Vibrio campbellii DS40M4]
 gi|156524864|gb|ABU69950.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSFIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYYKLPADAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASD 234
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|119713421|gb|ABL97483.1| possible alternative respiratory pathway oxidase [uncultured marine
           bacterium HF130_81H07]
          Length = 213

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 135/196 (68%)

Query: 39  DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 98
           ++  H  P + SD  AL   K LR   D  F++RYG RA++LETVAAVPGMV G++ H +
Sbjct: 13  EIAGHKLPISISDSFALGITKFLRNSADFLFKKRYGHRAVVLETVAAVPGMVAGVVHHLR 72

Query: 99  SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 158
           SLRR +   G I+ +LEEAENERMHLMTF+E+A+P  +ER L+F  Q  F   Y   Y+ 
Sbjct: 73  SLRRMQDDNGLIREMLEEAENERMHLMTFIEIAQPSTFERFLIFLAQIGFGTFYTFLYIF 132

Query: 159 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 218
             + AHRM+GY EEEA+ SYTE+L E+DKG IEN  AP IA +YW L  +++L+DVV+ V
Sbjct: 133 FNRTAHRMIGYFEEEAVVSYTEYLDEIDKGQIENTQAPEIAINYWNLAKDASLRDVVIAV 192

Query: 219 RADEAHHRDVNHYASD 234
           R DEA HRD NH  +D
Sbjct: 193 RNDEAGHRDKNHLIAD 208


>gi|119947000|ref|YP_944680.1| alternative oxidase [Psychromonas ingrahamii 37]
 gi|119865604|gb|ABM05081.1| alternative oxidase [Psychromonas ingrahamii 37]
          Length = 211

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 134/192 (69%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H  P   S+ +A    +SL++  +LF+ ++Y  RA++LET+AAVPGMV GML H K+LRR
Sbjct: 8   HQKPNKVSEYIAYKITQSLKFMLNLFYGKKYAKRAVILETIAAVPGMVAGMLNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
                GWI+ LL+EAENERMHLM F+++AKP W ER LV   QG+F   Y   Y++S K 
Sbjct: 68  MRDDQGWIRELLDEAENERMHLMIFLDIAKPTWIERTLVLLGQGIFLIIYTFLYILSSKT 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
            HR+VGY EEEA  SY+EFL+++D G +ENVPAP IA DY+ L  ++ L+DVVL +R DE
Sbjct: 128 GHRVVGYFEEEACKSYSEFLQKIDAGEVENVPAPKIAKDYYALDDDACLRDVVLCIREDE 187

Query: 223 AHHRDVNHYASD 234
             HRD NH  +D
Sbjct: 188 GKHRDRNHEFAD 199


>gi|59711185|ref|YP_203961.1| alternative oxidase 1 [Vibrio fischeri ES114]
 gi|59479286|gb|AAW85073.1| alternative oxidase 1 [Vibrio fischeri ES114]
          Length = 211

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 135/193 (69%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH A    S+K+A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 7   KHKATNKISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           R +   GWI+ LL EAENERMHLM F+++AKP+W ER LV   Q VF   Y   YL+S K
Sbjct: 67  RMKDDQGWIQELLSEAENERMHLMIFLDIAKPRWIERLLVLLGQAVFIVVYSFIYLLSSK 126

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHR+VGY EEEA  SYTE+L ++D+G +EN  AP IA DY++LP ++ L+DV+L +R D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLAKIDEGTVENEAAPQIAIDYYQLPSDAMLRDVILKIRND 186

Query: 222 EAHHRDVNHYASD 234
           EA HRD NH  +D
Sbjct: 187 EAKHRDRNHSFAD 199


>gi|89072986|ref|ZP_01159533.1| alternative oxidase [Photobacterium sp. SKA34]
 gi|89051204|gb|EAR56660.1| alternative oxidase [Photobacterium sp. SKA34]
          Length = 211

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 138/200 (69%), Gaps = 1/200 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H     FS+++A    + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HRETNKFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWIK LL EA+NERMHLM F+++AKP W ER LV   Q VF   Y + YL S K 
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWVERGLVLLGQAVFICVYSIIYLTSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA  SYTEFL+++D G +ENV AP IA +Y+ L  ++ L+DVVL +R DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYELHDDAKLRDVVLRIREDE 187

Query: 223 AHHRDVNHYASDIHYQGRQL 242
           A HRD NH  +D  YQ ++L
Sbjct: 188 AKHRDRNHNFADC-YQNKEL 206


>gi|197334925|ref|YP_002155335.1| alternative oxidase 2 [Vibrio fischeri MJ11]
 gi|197316415|gb|ACH65862.1| alternative oxidase 2 [Vibrio fischeri MJ11]
          Length = 211

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 135/193 (69%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH A    S+K+A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 7   KHKATNKISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           R +   GWI+ LL EAENERMHLM F+++AKP+W ER LV   Q VF   Y   YL+S K
Sbjct: 67  RMKDDQGWIQELLSEAENERMHLMIFLDIAKPRWIERLLVLLGQAVFIVVYSFIYLLSSK 126

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHR+VGY EEEA  SYTE+L ++D+G +EN  AP IA DY++LP ++ L+DV+L +R D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLAKIDEGAVENEAAPQIAIDYYQLPSDAMLRDVILKIRND 186

Query: 222 EAHHRDVNHYASD 234
           EA HRD NH  +D
Sbjct: 187 EAKHRDRNHSFAD 199


>gi|163803376|ref|ZP_02197252.1| hypothetical protein 1103602000422_AND4_18992 [Vibrio sp. AND4]
 gi|159172838|gb|EDP57680.1| hypothetical protein AND4_18992 [Vibrio sp. AND4]
          Length = 211

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 142/200 (71%), Gaps = 1/200 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H   +  S+ +AL   + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYIALRITRLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWI+ LL+EAENERMHLM F+++AKP + ER LV   QG F   Y L YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSFVERLLVLLGQGAFILVYSLIYLLSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A  Y++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIGYYKLPADAMLRDVILRIREDE 187

Query: 223 AHHRDVNHYASDIHYQGRQL 242
           A HRD NH  +D  Y+ R L
Sbjct: 188 AGHRDRNHGFADA-YEDRAL 206


>gi|281211621|gb|EFA85783.1| alternative oxidase [Polysphondylium pallidum PN500]
          Length = 317

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/198 (54%), Positives = 137/198 (69%), Gaps = 1/198 (0%)

Query: 44  HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 103
           H P   SD +A + V  LR  ++L F+ +Y   A +LETVAAVPGMV GML H K+LRR 
Sbjct: 86  HQPQNISDNVARFAVWLLRKASNLVFKEKYIHYACVLETVAAVPGMVAGMLQHLKTLRRM 145

Query: 104 EHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFA 163
           EH+  WIK LL+EAENERMHLMTFME++ P   ER L+   QG ++NA+ L YLISPK A
Sbjct: 146 EHNN-WIKILLDEAENERMHLMTFMEISMPTKLERNLITLAQGAYWNAFLLFYLISPKTA 204

Query: 164 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEA 223
           HR  GYLEEEA+ +YT  L +LD G +ENV AP IA +YW LP ++ L+DV+LV+R DE 
Sbjct: 205 HRFTGYLEEEAVITYTNMLHDLDAGKVENVEAPQIAREYWGLPDDAKLRDVILVIRQDEV 264

Query: 224 HHRDVNHYASDIHYQGRQ 241
            H  VNH  S++   G +
Sbjct: 265 DHGHVNHQLSNMIATGNE 282


>gi|222631917|gb|EEE64049.1| hypothetical protein OsJ_18878 [Oryza sativa Japonica Group]
          Length = 131

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 116/131 (88%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLE+EAIHSYT++
Sbjct: 1   MHLMTFMEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEKEAIHSYTKY 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+ + G IENVPA  IA DYWRLP  +TLKDVV+VVRA+EAHHRDVNH+ASD+H+QG  
Sbjct: 61  LKDNEAGKIENVPASPIAIDYWRLPAGATLKDVVVVVRANEAHHRDVNHFASDVHFQGMD 120

Query: 242 LRESPAPLGYH 252
           L+++PAPL YH
Sbjct: 121 LKDTPAPLDYH 131


>gi|90414281|ref|ZP_01222260.1| alternative oxidase [Photobacterium profundum 3TCK]
 gi|90324619|gb|EAS41166.1| alternative oxidase [Photobacterium profundum 3TCK]
          Length = 211

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 135/193 (69%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH   +  S+ +A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 7   KHRTASKLSEHVAYKITQCLKFLLNIFYGTKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           R +   GWI+ LL+EAENERMHLM F+ +AKP W ERALV   QG F   Y L YL+S K
Sbjct: 67  RMKDDEGWIRELLDEAENERMHLMIFLNIAKPSWVERALVLIGQGAFIVVYSLIYLLSSK 126

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHR+VGY EEEA  SYTE+L ++D G +ENV AP IA +Y++LP ++ L+DV++ +R D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLSKIDAGEVENVAAPKIAIEYYQLPLDAMLRDVIVKIRND 186

Query: 222 EAHHRDVNHYASD 234
           EA H D NH+ +D
Sbjct: 187 EAKHHDQNHFFAD 199


>gi|330446299|ref|ZP_08309951.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490490|dbj|GAA04448.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 211

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 136/200 (68%), Gaps = 1/200 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H      S+++A    + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HRETNKISERLAYKITQLLKFSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +   GWIK LL EA+NERMHLM F+++AKP W ER LV   Q VF   Y + YL S K 
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWIERGLVLLGQAVFICVYSIIYLCSSKI 127

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA  SYTEFL+++D G +ENV AP IA  Y++L  ++ L+DVVL +R DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGKLENVAAPDIAIKYYQLQDDARLRDVVLRIREDE 187

Query: 223 AHHRDVNHYASDIHYQGRQL 242
           A HRD NH  +D  YQ + L
Sbjct: 188 AKHRDRNHNFADC-YQNKDL 206


>gi|449081284|sp|Q8NKE2.2|AOX_CRYNH RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|405117524|gb|AFR92299.1| alternative oxidase [Cryptococcus neoformans var. grubii H99]
          Length = 401

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 156/270 (57%), Gaps = 42/270 (15%)

Query: 7   GVEAP--------KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 58
           GVE P         V  D  +   W  F P    E +L+       AP TF DK A  TV
Sbjct: 80  GVEGPHYQDQVSHNVLSDASTTGAWTMFNPIYT-EKELNTVQVVGRAPVTFGDKAAHRTV 138

Query: 59  KSLRWPTDLFF------------------------------QRRYGCRAMMLETVAAVPG 88
           K LR   DL                                 +++  R ++LE++A VPG
Sbjct: 139 KFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPG 198

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGG L H +S+R  +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF
Sbjct: 199 MVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVF 258

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 205
           +NA+FL YLISP+ AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRL
Sbjct: 259 YNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRL 318

Query: 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           P +S+L DV+  VRADEA HR VNH  +++
Sbjct: 319 PASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|58258419|ref|XP_566622.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106269|ref|XP_778145.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260848|gb|EAL23498.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222759|gb|AAW40803.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 401

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 156/270 (57%), Gaps = 42/270 (15%)

Query: 7   GVEAP--------KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 58
           GVE P         V  D  +   W  F P    E +L+       AP TF DK A  TV
Sbjct: 80  GVEGPHYQDQASHNVLSDASTTGAWTMFNPIYT-EKELNTVQVVGRAPVTFGDKAAHKTV 138

Query: 59  KSLRWPTDLFF------------------------------QRRYGCRAMMLETVAAVPG 88
           K LR   DL                                 +++  R ++LE++A VPG
Sbjct: 139 KFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPG 198

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGG L H +S+R  +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF
Sbjct: 199 MVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVF 258

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 205
           +NA+FL YLISP+ AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRL
Sbjct: 259 YNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRL 318

Query: 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           P +S+L DV+  VRADEA HR VNH  +++
Sbjct: 319 PASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|429965955|gb|ELA47952.1| hypothetical protein VCUG_00535 [Vavraia culicis 'floridensis']
          Length = 318

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/200 (55%), Positives = 135/200 (67%), Gaps = 2/200 (1%)

Query: 37  SIDLK--KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 94
           SID +  KH  P +FSD  A   VK LR   DL+FQ+ Y  R ++LETVAA+PGMVGGM 
Sbjct: 108 SIDYESGKHFVPQSFSDTFAFLIVKGLRAFADLYFQKDYLRRVVVLETVAAIPGMVGGMF 167

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLR  E +G  IK L+ EAENER HL+TF+ V KP   +R L+   Q +FFN Y +
Sbjct: 168 RHLYSLRNLEDNGEAIKKLVLEAENERQHLLTFLAVLKPNILDRMLIRLGQFLFFNGYMV 227

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 214
            Y ++PK AHR VGYLEEEA+ SY  F +E+  G+I+NV AP I+ DYW LP  +TL DV
Sbjct: 228 FYFMTPKTAHRFVGYLEEEAVRSYDAFEEEILVGHIKNVDAPRISKDYWNLPEEATLVDV 287

Query: 215 VLVVRADEAHHRDVNHYASD 234
           V  VRADEA HRDVNH  +D
Sbjct: 288 VRAVRADEAEHRDVNHRMAD 307


>gi|330790445|ref|XP_003283307.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
 gi|325086732|gb|EGC40117.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
          Length = 320

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 137/189 (72%), Gaps = 1/189 (0%)

Query: 46  PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 105
           P T  D  A  TV+ LR  ++LFF+ +Y   A++LET+A+VPG+ GG +LH ++LR  E 
Sbjct: 83  PKTIGDHFAKNTVQLLRKVSNLFFREKYIHYAIVLETIASVPGLCGGAMLHLRALRTME- 141

Query: 106 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 165
           S  WIKAL++E+ENER+HLM+F+E+ KP   ER +V A Q VF+N Y +GY ISPK  HR
Sbjct: 142 SNNWIKALMDESENERIHLMSFIELTKPTLIERTMVAAAQAVFWNLYLVGYAISPKIMHR 201

Query: 166 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 225
           +VGYLE EA+ +YT FL ++D G +EN+PA  +A +YW LP ++TL+D++LV+R DE  H
Sbjct: 202 VVGYLEHEAVKTYTNFLADIDAGKVENIPASKLAIEYWGLPADATLRDMILVIREDEMDH 261

Query: 226 RDVNHYASD 234
           R VNH  S+
Sbjct: 262 RLVNHEISN 270


>gi|294083747|ref|YP_003550504.1| alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663319|gb|ADE38420.1| Alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 200

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 133/199 (66%), Gaps = 1/199 (0%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           +H AP+ FSD+ AL      RW  D FF +RYG RA++LETVA VPGMV GM  H  SLR
Sbjct: 2   QHRAPSDFSDRFALAVTMFFRWFADTFFAKRYGHRAVVLETVAGVPGMVAGMWNHLSSLR 61

Query: 102 RFEHS-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 160
           + +    GWIK LL+EAENERMHLM F+E+AKP   ERA++   Q  F++ YF+ Y+  P
Sbjct: 62  KMKQDEKGWIKTLLDEAENERMHLMIFIEIAKPNALERAIILLAQFFFWHFYFILYVFFP 121

Query: 161 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 220
           K AHRMVGY EE+A+ SYTE+L ++D     N+ AP IA DY+ LP  + L+DV++ VR 
Sbjct: 122 KTAHRMVGYFEEQAVISYTEYLDQIDSDKATNIDAPDIAKDYYGLPKTAKLRDVIIAVRQ 181

Query: 221 DEAHHRDVNHYASDIHYQG 239
           DE  H D NH  +D   +G
Sbjct: 182 DEQGHSDTNHEMADALAKG 200


>gi|321251112|ref|XP_003191963.1| alternative oxidase 1 [Cryptococcus gattii WM276]
 gi|317458431|gb|ADV20176.1| Alternative oxidase 1 [Cryptococcus gattii WM276]
          Length = 400

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 156/270 (57%), Gaps = 42/270 (15%)

Query: 7   GVEAP--------KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 58
           GVE P         V  D  +   W  F P    + +L+       AP TF DK A  TV
Sbjct: 79  GVEGPHYQDQVSHNVLSDASTTGAWTMFNPIYT-DKELNTVQVVGRAPVTFGDKAAHKTV 137

Query: 59  KSLR-------------WPTDLFFQR-----------------RYGCRAMMLETVAAVPG 88
           K LR              P  +  Q+                 ++  R ++LE++A VPG
Sbjct: 138 KFLRKCFDFITGYTPYEIPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPG 197

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGG L H +S+R  +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF
Sbjct: 198 MVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPSIFTRALVLAAQGVF 257

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 205
           +NA+FL YLISP+ AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRL
Sbjct: 258 YNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRL 317

Query: 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           P  S+L DV+  VRADEA HR VNH  +++
Sbjct: 318 PATSSLLDVIRAVRADEATHRFVNHSLANL 347


>gi|222635049|gb|EEE65181.1| hypothetical protein OsJ_20292 [Oryza sativa Japonica Group]
          Length = 130

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 114/131 (87%), Gaps = 1/131 (0%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFME  KP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEAIH YTE+
Sbjct: 1   MHLMTFMEAVKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYTEY 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+++ G IENVPAP IA DYWRLP  +TLKDVV +VRADEAHHRDVNH+ASD+H++G  
Sbjct: 61  LKDIEAGKIENVPAPPIAIDYWRLPAGATLKDVV-IVRADEAHHRDVNHFASDVHFRGMD 119

Query: 242 LRESPAPLGYH 252
           L+++PAPL YH
Sbjct: 120 LKDTPAPLDYH 130


>gi|149925323|ref|ZP_01913587.1| Alternative oxidase [Limnobacter sp. MED105]
 gi|149825440|gb|EDM84648.1| Alternative oxidase [Limnobacter sp. MED105]
          Length = 204

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 132/191 (69%), Gaps = 1/191 (0%)

Query: 45  APTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE 104
            P  FSDK A       RW  D FF +RYG RA++LETVA VPGMV GM +H KSLR+ +
Sbjct: 9   TPKDFSDKFAKSLTMFFRWFADTFFAKRYGHRAVILETVAGVPGMVAGMWIHLKSLRKMK 68

Query: 105 HS-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFA 163
              G  I+ LLEEAENERMHLM F+E+AKP   ER LV   Q VF++ YF+ Y+  PK A
Sbjct: 69  TGYGPTIRTLLEEAENERMHLMIFIEIAKPSVGERLLVLFAQLVFWHFYFILYVFFPKTA 128

Query: 164 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEA 223
           HRMVGY E +A+ SYT++L E+D G IEN+ AP IA DY++LP ++ L+DVV+ VR DE 
Sbjct: 129 HRMVGYFENQAVVSYTDYLAEIDAGRIENIAAPKIAIDYYKLPADAKLRDVVIAVRNDEQ 188

Query: 224 HHRDVNHYASD 234
            H DVNH  +D
Sbjct: 189 GHADVNHEMAD 199


>gi|208436656|gb|ACI28874.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 124

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 110/123 (89%)

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
           FE SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK 
Sbjct: 1   FEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLTVQGVFFNAFFVLYLLSPKL 60

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGYLEEEAIHSYTE+LK++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADE
Sbjct: 61  AHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 120

Query: 223 AHH 225
           AHH
Sbjct: 121 AHH 123


>gi|378548285|sp|D5JAJ1.1|AOX_TRAHO RecName: Full=Ubiquinol oxidase; AltName: Full=Alternative oxidase
 gi|293338884|gb|ADE43749.1| alternative oxidase [Trachipleistophora hominis]
 gi|440492337|gb|ELQ74912.1| putative Alternative oxidase domain (AOX) protein
           [Trachipleistophora hominis]
          Length = 318

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 130/193 (67%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           KH  P +FSD  A   VK LR   DL+FQ+ Y  R ++LETVAA+PGMVGGM  H  SLR
Sbjct: 115 KHFVPQSFSDTFAYLIVKGLRAFADLYFQKDYVRRVVVLETVAAIPGMVGGMFRHLYSLR 174

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
             E +G  IK L+ EAENER HL+TF+ V KP   +R L+   Q +FFN Y + Y ++P+
Sbjct: 175 NLEDNGEAIKKLVLEAENERQHLLTFLAVLKPNVLDRMLIKLGQFLFFNGYMVFYFVAPR 234

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
            AHR VGYLEEEA+ SY  F +E+  G+I+NV AP I+ DYW LP  + L DVV  VRAD
Sbjct: 235 TAHRFVGYLEEEAVRSYDAFEEEILLGHIKNVEAPRISKDYWNLPEEAMLIDVVRAVRAD 294

Query: 222 EAHHRDVNHYASD 234
           EA HRDVNH  +D
Sbjct: 295 EAEHRDVNHKMAD 307


>gi|218197681|gb|EEC80108.1| hypothetical protein OsI_21855 [Oryza sativa Indica Group]
          Length = 130

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 114/131 (87%), Gaps = 1/131 (0%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFME  KP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEAIH YTE+
Sbjct: 1   MHLMTFMEAVKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYTEY 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+++ G IENVPAP IA DYW+LP  +TLKDVV +VRADEAHHRDVNH+ASD+H++G  
Sbjct: 61  LKDIEAGKIENVPAPPIAIDYWQLPAGATLKDVV-IVRADEAHHRDVNHFASDVHFRGMD 119

Query: 242 LRESPAPLGYH 252
           L+++PAPL YH
Sbjct: 120 LKDTPAPLDYH 130


>gi|20467245|gb|AAM22475.1|AF502293_1 alternative oxidase [Cryptococcus neoformans var. grubii]
          Length = 401

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/256 (44%), Positives = 151/256 (58%), Gaps = 34/256 (13%)

Query: 13  VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF--- 69
           V  D  +   W    P    E +L+       AP TF DK A  TVK LR   DL     
Sbjct: 94  VLSDASTTGAWTMLNPIYT-EKELNTVQVVGRAPVTFGDKAAHRTVKFLRKCFDLLTGYT 152

Query: 70  ---------------------------QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
                                       +++  R ++LE++A VPGMVGG L H +S+R 
Sbjct: 153 PYEVPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPGMVGGTLRHLRSMRL 212

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF+NA+FL YLISP+ 
Sbjct: 213 LKRDGGWIHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVFYNAFFLTYLISPRI 272

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVR 219
           AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRLP +S+L DV+  VR
Sbjct: 273 AHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRLPASSSLLDVIRAVR 332

Query: 220 ADEAHHRDVNHYASDI 235
           ADEA HR VNH  +++
Sbjct: 333 ADEATHRFVNHSLANL 348


>gi|38345481|emb|CAE01695.2| OSJNBa0010H02.19 [Oryza sativa Japonica Group]
          Length = 125

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 111/125 (88%)

Query: 128 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
           MEVAKP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ 
Sbjct: 1   MEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEA 60

Query: 188 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPA 247
           G IENVPAP IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+Q   L+++PA
Sbjct: 61  GKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQRMDLKDTPA 120

Query: 248 PLGYH 252
           PL YH
Sbjct: 121 PLDYH 125


>gi|428185051|gb|EKX53904.1| hypothetical protein GUITHDRAFT_63810 [Guillardia theta CCMP2712]
          Length = 246

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 134/203 (66%), Gaps = 12/203 (5%)

Query: 40  LKKHHAPT-TFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMV 90
           ++K H P   F D++A   VK  RW  D F   R+G         R   LETVAAVPGM 
Sbjct: 14  VRKTHRPMEDFVDRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 73

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
            GML H +SLRR +   GWI  LLEEAENERMHL+TF+++ KP +  R  V A QG+F N
Sbjct: 74  AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 133

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP 207
            +F+ Y+ SP+F HR VGYLEEEA+ +YT+ + E+D G +   +  PAP IA DYW L P
Sbjct: 134 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 193

Query: 208 NSTLKDVVLVVRADEAHHRDVNH 230
           +++++D++L VR DEA+HRDVNH
Sbjct: 194 DASMRDLMLAVRMDEANHRDVNH 216


>gi|312885255|ref|ZP_07744933.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367114|gb|EFP94688.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 210

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 133/194 (68%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 100
           +KH+ P + S+K+AL   K L+   +LF+  +Y  RAM+LET+AAVPGMV G+  H K+L
Sbjct: 5   QKHYTPNSGSEKIALLVTKLLKKTLNLFYGGKYARRAMLLETIAAVPGMVAGVFNHLKAL 64

Query: 101 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 160
           RR +  GGWIK LL+EA+NERMHLM F+ + +P   ERALV  +Q  F   Y   YL+S 
Sbjct: 65  RRMKDDGGWIKELLDEADNERMHLMIFLRITQPSIIERALVMLIQFFFVLIYSFVYLLSS 124

Query: 161 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 220
           K AHR+VGY EEEA +SY EF++++  G +EN PAPAIA  Y+ L  ++ L DV+  +R 
Sbjct: 125 KTAHRIVGYFEEEACNSYCEFIEKILDGTVENSPAPAIAIRYYSLQDDAKLLDVLECIRD 184

Query: 221 DEAHHRDVNHYASD 234
           DEA HRD NH  +D
Sbjct: 185 DEAKHRDKNHDIAD 198


>gi|222612438|gb|EEE50570.1| hypothetical protein OsJ_30719 [Oryza sativa Japonica Group]
          Length = 131

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 112/131 (85%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAK +WYER LV A Q VFFNAYFL YL+SPK AHR++GYLEEEAI SYTE+
Sbjct: 1   MHLMTFMEVAKLRWYERTLVLADQRVFFNAYFLSYLLSPKLAHRVIGYLEEEAIDSYTEY 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+++ G IENVP P IA DYWRLP ++TLKDVV+VV ADEAHHRDVNH+ASD+H+QG  
Sbjct: 61  LKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVNHFASDVHFQGMD 120

Query: 242 LRESPAPLGYH 252
           L+++PA L YH
Sbjct: 121 LKDTPALLDYH 131


>gi|283444935|gb|ADB20396.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
 gi|283444937|gb|ADB20397.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 106

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 100/106 (94%)

Query: 21  WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 80
           W W CFRPWEAY+ ++SIDLKKHHAPTTF DK+A WTVKSLRWPTD+FFQRRYGCRAMML
Sbjct: 1   WTWICFRPWEAYQPNMSIDLKKHHAPTTFLDKLAFWTVKSLRWPTDIFFQRRYGCRAMML 60

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 126
           ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMT
Sbjct: 61  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMT 106


>gi|428185053|gb|EKX53906.1| hypothetical protein GUITHDRAFT_63923 [Guillardia theta CCMP2712]
          Length = 247

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 134/203 (66%), Gaps = 12/203 (5%)

Query: 40  LKKHHAPTT-FSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMV 90
           ++K H P    +D++A   VK  RW  D F   R+G         R   LETVAAVPGM 
Sbjct: 14  VRKTHKPIEGLADRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 73

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
            GML H +SLRR +   GWI  LLEEAENERMHL+TF+++ KP +  R  V A QG+F N
Sbjct: 74  AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 133

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP 207
            +F+ Y+ SP+F HR VGYLEEEA+ +YT+ + E+D G +   +  PAP IA DYW L P
Sbjct: 134 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 193

Query: 208 NSTLKDVVLVVRADEAHHRDVNH 230
           +++++D++L VR DEA+HRDVNH
Sbjct: 194 DASMRDLMLAVRMDEANHRDVNH 216


>gi|428185052|gb|EKX53905.1| hypothetical protein GUITHDRAFT_100154 [Guillardia theta CCMP2712]
          Length = 285

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 134/203 (66%), Gaps = 12/203 (5%)

Query: 40  LKKHHAPTT-FSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMV 90
           ++K H P    +D++A   VK  RW  D F   R+G         R   LETVAAVPGM 
Sbjct: 52  VRKTHKPIEGLADRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 111

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
            GML H +SLRR +   GWI  LLEEAENERMHL+TF+++ KP +  R  V A QG+F N
Sbjct: 112 AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 171

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP 207
            +F+ Y+ SP+F HR VGYLEEEA+ +YT+ + E+D G +   +  PAP IA DYW L P
Sbjct: 172 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 231

Query: 208 NSTLKDVVLVVRADEAHHRDVNH 230
           +++++D++L VR DEA+HRDVNH
Sbjct: 232 DASMRDLMLAVRMDEANHRDVNH 254


>gi|84386378|ref|ZP_00989406.1| alternative oxidase [Vibrio splendidus 12B01]
 gi|84378802|gb|EAP95657.1| alternative oxidase [Vibrio splendidus 12B01]
          Length = 210

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/194 (49%), Positives = 132/194 (68%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H+ P  FS+K+AL   + L+   +LF+ +    RAM+LET+AAVPGMV G+  H K+LRR
Sbjct: 7   HYKPEIFSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +  GGWIK LL+EA+NERMHLM F+ V  P   ER LV  +Q +F   Y + YL+S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTNPSIIERILVMLLQFIFLLIYGVIYLVSSKT 126

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SY+E++ ++  G + N PAP IA  Y+RLP N+T  DV+  +R DE
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIQDGTLPNHPAPEIAIKYYRLPENATFLDVLFCIREDE 186

Query: 223 AHHRDVNHYASDIH 236
           A HRD NH  ++++
Sbjct: 187 AKHRDKNHDIANLY 200


>gi|116310409|emb|CAH67418.1| OSIGBa0143N19.12 [Oryza sativa Indica Group]
          Length = 125

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/125 (73%), Positives = 110/125 (88%)

Query: 128 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
           MEVAKP+WYER LV A+Q VFFN YF+GYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ 
Sbjct: 1   MEVAKPRWYERTLVLAIQRVFFNTYFIGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEA 60

Query: 188 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPA 247
           G IENVPAP IA DYWRLP  +TLKDVV+VVRA+EAHHRDVNH+ASD+H+Q   L+++PA
Sbjct: 61  GKIENVPAPPIAIDYWRLPTGATLKDVVVVVRANEAHHRDVNHFASDVHFQRMDLKDTPA 120

Query: 248 PLGYH 252
           PL YH
Sbjct: 121 PLDYH 125


>gi|148981866|ref|ZP_01816551.1| alternative oxidase [Vibrionales bacterium SWAT-3]
 gi|145960717|gb|EDK26058.1| alternative oxidase [Vibrionales bacterium SWAT-3]
          Length = 210

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 138/202 (68%), Gaps = 1/202 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H+ P  FS+K+AL   + L+   +LF+ +    RAM+LET+AAVPGMV G+  H K+LRR
Sbjct: 7   HYKPEIFSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +  GGWIK LL+EA+NERMHLM F+ V KP   ER LV  +Q +F   Y + YL+S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTKPSIIERILVMLLQFIFLIIYGVIYLVSSKT 126

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VGY EEEA +SY+E++ ++++G + N PAP IA  Y+RLP  +T  DV+  +R DE
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIEEGALPNHPAPEIAITYYRLPEGATFLDVLFRIREDE 186

Query: 223 AHHRDVNHYASDIHYQGRQLRE 244
           A HRD NH  +++ Y+ + L E
Sbjct: 187 AKHRDKNHDIANL-YKTKDLPE 207


>gi|218195344|gb|EEC77771.1| hypothetical protein OsI_16922 [Oryza sativa Indica Group]
          Length = 128

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 110/128 (85%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           MTFMEVAK +WYER LV AVQ VFFN YFLGYL+SPK AHR+V YLEEEAIHSYTE+LK+
Sbjct: 1   MTFMEVAKQRWYERTLVLAVQRVFFNTYFLGYLLSPKLAHRVVAYLEEEAIHSYTEYLKD 60

Query: 185 LDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRE 244
           ++ G IENVPAP IA DYWRLP  +TLKDVV+VVRA+EAHHRDVNH+ASD+H+Q   L++
Sbjct: 61  IEAGKIENVPAPPIAIDYWRLPTGATLKDVVVVVRANEAHHRDVNHFASDVHFQRMDLKD 120

Query: 245 SPAPLGYH 252
           + APL YH
Sbjct: 121 THAPLDYH 128


>gi|398396918|ref|XP_003851917.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
 gi|339471797|gb|EGP86893.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
          Length = 342

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 139/207 (67%), Gaps = 14/207 (6%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 92
           H  P  FSD++AL  V+ LRW  DL             R+Y  R + LE+VA VPGMV G
Sbjct: 97  HRNPKDFSDRVALTFVRVLRWGLDLATGYRKGAGNMTARQYMIRNVFLESVAGVPGMVAG 156

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H  S+RR +   GWI+ LLEE+ NERMHL+TF+++A+P W+ R +V   QGVFFNA+
Sbjct: 157 MLRHLHSMRRMKRDNGWIETLLEESFNERMHLLTFLKMAEPGWFMRVMVLGAQGVFFNAF 216

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS 209
           F+ YL+SP+  HR VG+LEEEA+ +YT  + ++D G +   +N+PAP IA  YW +P  S
Sbjct: 217 FISYLLSPRTCHRFVGHLEEEAVLTYTREIADIDAGLLPEWDNLPAPDIAVKYWSMPEGS 276

Query: 210 -TLKDVVLVVRADEAHHRDVNHYASDI 235
            T++D++L +RADE+ HR+VNH   ++
Sbjct: 277 RTMRDLLLYIRADESKHREVNHTLGNL 303


>gi|328875297|gb|EGG23662.1| hypothetical protein DFA_05796 [Dictyostelium fasciculatum]
          Length = 363

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 131/189 (69%), Gaps = 1/189 (0%)

Query: 46  PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 105
           P TF D  A + VKSLR  +++FF+ +Y   A +LETVAAVPGM GGML H  SLR  + 
Sbjct: 148 PKTFGDHFARYAVKSLRLLSNMFFKEKYIHYACLLETVAAVPGMAGGMLQHLHSLRTCQ- 206

Query: 106 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 165
           +   IK LL+EAENERMHLMTF+E+ KP + ER L+   Q  +   Y + YL+SPK AHR
Sbjct: 207 NNYVIKTLLDEAENERMHLMTFIEITKPTFGERVLIALAQAAYLVDYTILYLVSPKTAHR 266

Query: 166 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 225
            VG+LEEEA+ +YT  L++LD G +ENV APAIA  YW LP ++ L+DV++V+R DE  H
Sbjct: 267 FVGFLEEEAVLTYTNMLRDLDAGLVENVNAPAIAKAYWGLPEDAKLRDVIMVIRQDEVEH 326

Query: 226 RDVNHYASD 234
             VNH  S+
Sbjct: 327 AHVNHDISN 335


>gi|428180112|gb|EKX48980.1| hypothetical protein GUITHDRAFT_68249 [Guillardia theta CCMP2712]
 gi|428180113|gb|EKX48981.1| hypothetical protein GUITHDRAFT_68214 [Guillardia theta CCMP2712]
          Length = 248

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 130/206 (63%), Gaps = 11/206 (5%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 92
           K H  P    D++AL  VK+ RW  D F   R+G         R   LETVA VPGM  G
Sbjct: 16  KTHKKPEDMVDRVALAAVKAARWSFDTFSGYRFGNLTEGKVINRICFLETVAGVPGMTAG 75

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H +SLR  +   GWI  LLEEAENERMHL+TF+++ +P    RA V   QGVF N +
Sbjct: 76  MLRHLRSLRIMDRDHGWIHTLLEEAENERMHLLTFVKLRRPGPLFRAAVVGTQGVFMNVF 135

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS 209
           FL YL+SP+F HR VGYLEEEA+ +YT+ +  +D G +   +   AP IA DYW L P +
Sbjct: 136 FLCYLVSPRFCHRFVGYLEEEAVKTYTDIINAIDDGRLGHWKTQAAPQIAIDYWHLKPEA 195

Query: 210 TLKDVVLVVRADEAHHRDVNHYASDI 235
           T++D++L VRADEA HRDVNH  S +
Sbjct: 196 TMRDLMLAVRADEACHRDVNHTLSGL 221


>gi|27650410|emb|CAD33257.1| alternative oxidase [Crocus sativus]
          Length = 156

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 113/140 (80%), Gaps = 1/140 (0%)

Query: 114 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH-RMVGYLEE 172
           LEEAENERMHLMTFMEV++P+WYERALV  VQG             PK     +VGYLEE
Sbjct: 17  LEEAENERMHLMTFMEVSQPRWYERALVMTVQGSLLQCLLPRKPHLPKVCFIGVVGYLEE 76

Query: 173 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
           EAIHSYTEFLKELDKG+IENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNH+A
Sbjct: 77  EAIHSYTEFLKELDKGSIENVPAPAIAIDYWRLSKSATLRDVVMVVRADEAHHRDVNHFA 136

Query: 233 SDIHYQGRQLRESPAPLGYH 252
           SDIH QG +LR  PAP+GYH
Sbjct: 137 SDIHCQGHELRVHPAPVGYH 156


>gi|328875293|gb|EGG23658.1| alternative oxidase [Dictyostelium fasciculatum]
          Length = 392

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 131/189 (69%), Gaps = 1/189 (0%)

Query: 46  PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 105
           P TF D  A + VKSLR  +++FF+ +Y   A +LETVAAVPGM GGML H  SLR  ++
Sbjct: 176 PKTFGDHFARYAVKSLRLLSNMFFKEKYIHYACLLETVAAVPGMAGGMLQHLHSLRTCKN 235

Query: 106 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 165
               IK LL+EAENERMHLMTF+E+ KP   ERAL+   Q  +   Y + YL+SPK AHR
Sbjct: 236 IY-VIKTLLDEAENERMHLMTFIEITKPTVGERALIALAQAAYLVDYMILYLVSPKTAHR 294

Query: 166 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 225
            VG+LEEEA+ +YT  L++LD G +ENV APAIA  YW LP ++ L+DV++V+R DE  H
Sbjct: 295 FVGFLEEEAVLTYTNMLRDLDAGLVENVNAPAIAKAYWGLPEDAKLRDVIMVIRQDEVEH 354

Query: 226 RDVNHYASD 234
             VNH  S+
Sbjct: 355 AHVNHDISN 363


>gi|121710154|ref|XP_001272693.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
 gi|119400843|gb|EAW11267.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
          Length = 357

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 142/218 (65%), Gaps = 22/218 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 84
           H    T+SD +AL TV+ LRW  DL                FQ   +++  R + LE+VA
Sbjct: 104 HRDAKTWSDWVALGTVRVLRWGMDLLSGYKHPKPGQESNTKFQMTEQKWLTRFIFLESVA 163

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 164 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 223

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  LK+L+ G +   E + AP IA  
Sbjct: 224 QGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRALKDLETGKLPDWEKLEAPEIAVQ 283

Query: 202 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
           YW +P  + T+KD++L +RADEA HR+VNH   ++ + 
Sbjct: 284 YWNMPEGHRTMKDLLLYIRADEAKHREVNHTLGNLKHN 321


>gi|115399176|ref|XP_001215177.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114192060|gb|EAU33760.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 355

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/215 (47%), Positives = 139/215 (64%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 102 HREAKNWSDWVALGTVRMLRWGMDLVTGYRHPPPGKENDVRFRMTEQKWLTRFVFLESVA 161

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 162 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVLGA 221

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +K+L+ GN+   E   AP IA  
Sbjct: 222 QGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRAIKDLENGNLPLWEKKEAPEIAIQ 281

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           YW++P    T+KD++L VRADEA HR+VNH   ++
Sbjct: 282 YWKMPEGKRTMKDLLLYVRADEAKHREVNHTLGNL 316


>gi|290980396|ref|XP_002672918.1| alternative oxidase [Naegleria gruberi]
 gi|284086498|gb|EFC40174.1| alternative oxidase [Naegleria gruberi]
          Length = 294

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 130/201 (64%)

Query: 39  DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 98
           ++K+ + P   +DK AL  +K LR     FF  RY   A++LETVAAVPG+V G   H  
Sbjct: 90  EVKRSYKPVDLTDKTALAIMKFLRVFVHGFFGNRYIHHAVVLETVAAVPGIVAGGWRHFS 149

Query: 99  SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 158
           SLR      G I  L+EEAENERMHL+T+ME+ KP + ER LV   Q  F + Y   Y +
Sbjct: 150 SLRLMRRDHGHIGELMEEAENERMHLLTWMEMTKPTFLERLLVVGAQVAFTSFYTGAYFV 209

Query: 159 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 218
           +P+F HR+VGYLEEEA+ +YTEFL  +D G+I N  AP IA  YW L P++T++DVVLV+
Sbjct: 210 NPRFCHRLVGYLEEEAVGAYTEFLNAIDNGDIPNCKAPEIALKYWNLKPDATMRDVVLVI 269

Query: 219 RADEAHHRDVNHYASDIHYQG 239
           R DE  HRD NH  SD H  G
Sbjct: 270 RGDECMHRDYNHDMSDKHRAG 290


>gi|51701295|sp|Q9Y711.1|AOX_AJECA RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4768918|gb|AAD29680.1|AF133236_1 alternative oxidase [Ajellomyces capsulatus]
 gi|4768920|gb|AAD29681.1|AF133237_1 alternative oxidase [Ajellomyces capsulatus]
 gi|23452825|gb|AAN33183.1| alternative oxidase [Ajellomyces capsulatus]
          Length = 356

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 25/218 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 81
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 100 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 159

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 160 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 219

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 198
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N PAP I
Sbjct: 220 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 279

Query: 199 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 280 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 317


>gi|449548967|gb|EMD39933.1| hypothetical protein CERSUDRAFT_92418 [Ceriporiopsis subvermispora
           B]
          Length = 343

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 112/266 (42%), Positives = 151/266 (56%), Gaps = 37/266 (13%)

Query: 9   EAPKVNKDDGS-------EWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           E   + KDD +       +  W  F P    E   S+ +  H    T SDK+A+  V+ L
Sbjct: 35  EGELLTKDDATTTIPTMVKGDWVLFHPVYTPEELRSVQIM-HRDAKTLSDKVAVLFVRLL 93

Query: 62  RWPTDL--------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLL 95
           RW  D+                            +R++  R + LE+VA VPGMV  +L 
Sbjct: 94  RWGFDIASGYQHKPVPPGSNMTVQELREKGYTMDERQWLRRILFLESVAGVPGMVAAVLR 153

Query: 96  HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 155
           H +SLR     GGWI  LLEEAENERMHLMTFM + KP  + RA+V   QGVF+NA+FL 
Sbjct: 154 HLRSLRLMRRDGGWIHTLLEEAENERMHLMTFMSIRKPSIWFRAMVLGAQGVFYNAFFLS 213

Query: 156 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLK 212
           YL+SP   HR V +LEEEA+ +YT  ++EL+ G I    + PAP IA DYWRLPP++ L 
Sbjct: 214 YLVSPTTCHRFVAHLEEEAVLTYTRCIEELESGRIPEWTDAPAPEIAKDYWRLPPDAKLL 273

Query: 213 DVVLVVRADEAHHRDVNHYASDIHYQ 238
           DV+  VR+DE+ HR VNH  ++++Y+
Sbjct: 274 DVMYAVRSDESTHRFVNHSLANLNYK 299


>gi|225563182|gb|EEH11461.1| alternative oxidase [Ajellomyces capsulatus G186AR]
          Length = 357

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 25/218 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 81
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 198
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N PAP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 280

Query: 199 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 318


>gi|67523285|ref|XP_659703.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
 gi|7415933|dbj|BAA93615.1| mitochondrial alternative oxidase [Emericella nidulans]
 gi|40745775|gb|EAA64931.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
          Length = 351

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 84
           H     +SD +AL +V+ LRW  DL                FQ   + +  R + LE+VA
Sbjct: 98  HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 157

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGA 217

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E + AP IA  
Sbjct: 218 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 277

Query: 202 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           YW++P  N T+KD++L VRADEA HR+VNH   ++
Sbjct: 278 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNL 312


>gi|325093130|gb|EGC46440.1| alternative oxidase [Ajellomyces capsulatus H88]
          Length = 357

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 25/218 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 81
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 198
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N PAP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 280

Query: 199 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 318


>gi|51701294|sp|Q9P959.2|AOX_EMENI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|259487471|tpe|CBF86176.1| TPA: Alternative oxidase, mitochondrial Precursor (EC 1.-.-.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q9P959] [Aspergillus
           nidulans FGSC A4]
          Length = 354

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 84
           H     +SD +AL +V+ LRW  DL                FQ   + +  R + LE+VA
Sbjct: 101 HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 160

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 161 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGA 220

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E + AP IA  
Sbjct: 221 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 280

Query: 202 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           YW++P  N T+KD++L VRADEA HR+VNH   ++
Sbjct: 281 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNL 315


>gi|294867900|ref|XP_002765284.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239865297|gb|EEQ98001.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 328

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 106/222 (47%), Positives = 139/222 (62%), Gaps = 12/222 (5%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 92
           + H+ P  FSD+ A ++V++LR   D+    ++G         R + LETVAAVPGMVGG
Sbjct: 108 QTHYPPKGFSDRAAYYSVQALRQSFDILSGYKFGQHHAEMWVRRVVFLETVAAVPGMVGG 167

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           M+ H  SLR  E   GWI  LLEEAENERMHLM  + + +P    R LV   QG+FF  Y
Sbjct: 168 MVRHLNSLRNMERDHGWIHTLLEEAENERMHLMIALTLKEPGPLLRGLVLVSQGIFFWTY 227

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV---PAPAIATDYWRLPPNS 209
            L YL++PKF HR VGYLEEEA+ +YT  LK +D+G +      PAP IA DY+ L  N+
Sbjct: 228 GLLYLLAPKFNHRFVGYLEEEAVKTYTNLLKCIDEGKVSEFASEPAPFIARDYYELGENA 287

Query: 210 TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 251
           TL+DV   +RADE+HHRDVNH  +     G + + +P P G+
Sbjct: 288 TLRDVFACIRADESHHRDVNHTFASADENGCKYK-NPFPPGH 328


>gi|417951248|ref|ZP_12594355.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
 gi|342805200|gb|EGU40478.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
          Length = 210

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 97/202 (48%), Positives = 136/202 (67%), Gaps = 1/202 (0%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H+ P   S+K+AL   + L+   +LF+ +    RAM+LET+AAVPGMV G+  H K+LRR
Sbjct: 7   HYQPEVLSEKVALVVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
            +  GGWIK LL+EA+NERMHLM F+ V KP   ER LV  +Q +F   Y + YL S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTKPSIIERILVMLLQFLFLIIYSVIYLASSKT 126

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 222
           AHR+VG+ EEEA +SY+E++ ++++G + N PAP IA  Y+RLP  +T  DV+  +R DE
Sbjct: 127 AHRIVGFFEEEACNSYSEYISKIEEGALPNHPAPEIAITYYRLPEGATFLDVLFRIREDE 186

Query: 223 AHHRDVNHYASDIHYQGRQLRE 244
           A HRD NH  +++ Y+ + L E
Sbjct: 187 AKHRDKNHDIANL-YKTKDLPE 207


>gi|403351227|gb|EJY75100.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 275

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 135/203 (66%), Gaps = 10/203 (4%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---FFQRRYG-----CRAMMLETVAAVPGMVGGML 94
           H  P  F+D++AL TVK+ R   DL   + Q RY       R + LET+A VPGM GGM 
Sbjct: 27  HRKPADFTDRLALTTVKNFRRLFDLLTGYNQDRYSGRLWLNRVIFLETIAGVPGMCGGMT 86

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
           +H KSLR  +   G+I  LLEEAENER HL  FM    P +  RA++   QGVF+N YFL
Sbjct: 87  IHLKSLRTLKPDRGFIHYLLEEAENERTHLFLFMNYKNPSYLFRAMIAMGQGVFWNFYFL 146

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NVPAPAIATDYWRLPPNSTLK 212
            YLISP+F HR VGYLEEEA+H+Y+ FLK++D G +   NV A  +A DY++L  ++T +
Sbjct: 147 WYLISPRFCHRFVGYLEEEAVHTYSIFLKQMDAGYLPEFNVQASKMARDYYQLSDDATFR 206

Query: 213 DVVLVVRADEAHHRDVNHYASDI 235
           D+VL +RADE+ HR+ NHY SD+
Sbjct: 207 DMVLSIRADESVHREFNHYFSDL 229


>gi|452840505|gb|EME42443.1| hypothetical protein DOTSEDRAFT_175510 [Dothistroma septosporum
           NZE10]
          Length = 342

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 14/207 (6%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 92
           H    T SDK+A+  V++LRW  DL            +R+Y  R + LE+VA VPGMV G
Sbjct: 94  HREAKTMSDKVAVGFVRTLRWGLDLASGYTKNSGGMTERKYMIRNIFLESVAGVPGMVAG 153

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H +S+R  +   GW+++LLEE+ NERMHL+TF+++A+P W+ R LV   QGVFFNA+
Sbjct: 154 MLRHLRSMRTMKRDNGWMESLLEESYNERMHLLTFLKMAEPGWFMRFLVLGAQGVFFNAF 213

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPN- 208
           F+ YL+SPK  HR VGYLEEEA+ +YT  ++++D G +     + AP IA  YW +P   
Sbjct: 214 FVSYLVSPKTCHRFVGYLEEEAVLTYTREIEDIDAGRLPKWSQMEAPEIAVKYWNMPEGH 273

Query: 209 STLKDVVLVVRADEAHHRDVNHYASDI 235
            T++D++L +RADE+ HR+VNH   ++
Sbjct: 274 RTMRDLLLYIRADESKHREVNHTLGNL 300


>gi|350631272|gb|EHA19643.1| alternative oxidase [Aspergillus niger ATCC 1015]
          Length = 351

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 277

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|261195168|ref|XP_002623988.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239587860|gb|EEQ70503.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239610651|gb|EEQ87638.1| alternative oxidase [Ajellomyces dermatitidis ER-3]
 gi|327348915|gb|EGE77772.1| alternative oxidase [Ajellomyces dermatitidis ATCC 18188]
          Length = 358

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 150/242 (61%), Gaps = 30/242 (12%)

Query: 19  SEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL----------- 67
           + WK   F   E    D++I    H     +SD +AL TV++LR  TDL           
Sbjct: 83  TTWKHPVFT--EQQMKDIAI---AHREAKNWSDWVALGTVRALRRATDLATGYRHPLAGK 137

Query: 68  ----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
                       +R++  R + LETVA VPGMVGGML H +SLRR +   GWI+ LLEEA
Sbjct: 138 QEKEIPEKFQMTERKWIVRFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEA 197

Query: 118 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
            NERMHL++F+++A+P W+ R +V   QGVFFN++F+ YLISP+  HR VGYLEEEA+ +
Sbjct: 198 YNERMHLLSFLKLAEPGWFMRLMVLGAQGVFFNSFFISYLISPRTCHRFVGYLEEEAVMT 257

Query: 178 YTEFLKELDKG---NIENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYAS 233
           YT  +K+L+ G   N  N PAP IA +YW++P    T+ D++  +RADEA HR+VNH  +
Sbjct: 258 YTHAIKDLEAGKLPNWANQPAPDIAVEYWKMPEGKRTILDLLYYIRADEAKHREVNHTLA 317

Query: 234 DI 235
           ++
Sbjct: 318 NL 319


>gi|6226552|sp|O74180.2|AOX_ASPNG RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4521101|dbj|BAA32033.2| alternative oxidase [Aspergillus niger]
 gi|9650909|dbj|BAB03469.1| alternative oxidase [Aspergillus niger]
          Length = 351

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQ 277

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|358367171|dbj|GAA83790.1| alternative oxidase, mitochondrial [Aspergillus kawachii IFO 4308]
          Length = 351

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQ 277

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|145243920|ref|XP_001394472.1| alternative oxidase [Aspergillus niger CBS 513.88]
 gi|134079156|emb|CAK40685.1| alternative oxidase aox1-Aspergillus niger
          Length = 351

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 277

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|317032280|ref|XP_003188816.1| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 261

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 8   HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 67

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 68  GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 127

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 128 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 187

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 188 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 223


>gi|428184905|gb|EKX53759.1| hypothetical protein GUITHDRAFT_100729 [Guillardia theta CCMP2712]
          Length = 535

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 126/201 (62%), Gaps = 11/201 (5%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMVGG 92
           K H  P   +D +A   V++ RW  D     + G         RA+ LETVA VPGMVGG
Sbjct: 137 KTHVDPKDTADSIAYRAVQTARWMFDTLSGYKIGQLTESKVINRAIFLETVAGVPGMVGG 196

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H +SLR      GWI  LLEEAENERMHL+TF+ + KP    R  V   QGVF N +
Sbjct: 197 MLRHLRSLRTMTRDHGWIHTLLEEAENERMHLLTFVTIKKPGPIFRWAVLGTQGVFMNLF 256

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNS 209
           F+ YLI PK  HR VGYLEEEA+ +YT+ L  +D G +    N  AP IA DYW + P++
Sbjct: 257 FVTYLIYPKICHRFVGYLEEEAVKTYTDILNAIDDGRLSSFRNARAPQIAIDYWHMKPDA 316

Query: 210 TLKDVVLVVRADEAHHRDVNH 230
           T++D+ LVVRADEA+HRDVNH
Sbjct: 317 TMRDLFLVVRADEANHRDVNH 337


>gi|409040019|gb|EKM49507.1| hypothetical protein PHACADRAFT_131107 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 379

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/262 (43%), Positives = 145/262 (55%), Gaps = 36/262 (13%)

Query: 7   GVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTD 66
             E P ++ D      W  F P  + + +L      H  PTT  DK+A   V + R   D
Sbjct: 85  ATEQPPIHGD------WVLFHPVYS-DGELKAVKVIHREPTTLPDKIARTLVTTTRRCFD 137

Query: 67  -----------------LFFQRRYG---------CRAMMLETVAAVPGMVGGMLLHCKSL 100
                            L   R+ G          R + LET+A VPGMV  +L H +SL
Sbjct: 138 WVSGYKEKSEPPALNLSLEELRKQGYAMTDHQWLQRILFLETIAGVPGMVAAVLRHLRSL 197

Query: 101 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 160
           R      GWI  LLEEAENERMHLMTFM + KP  + RALV   QGVF+NA+FL YLISP
Sbjct: 198 RLMRRDAGWIHTLLEEAENERMHLMTFMTIRKPSIFFRALVLGAQGVFYNAFFLSYLISP 257

Query: 161 KFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +  HR V YLEEEA+H+YT  + +L+ G I   EN PAP IA DYWRL P++ + DV+  
Sbjct: 258 RICHRFVAYLEEEAVHTYTRCIADLENGRIPEWENFPAPEIAKDYWRLRPDAKMVDVLYA 317

Query: 218 VRADEAHHRDVNHYASDIHYQG 239
           VR+DE+ HR VNH  +++ Y+ 
Sbjct: 318 VRSDESTHRFVNHSLANLDYKS 339


>gi|302509494|ref|XP_003016707.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
 gi|291180277|gb|EFE36062.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
          Length = 357

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 142/219 (64%), Gaps = 23/219 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 83
           H    ++SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKSWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPPKHFQMNERKWLIRFVFLETV 162

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 222

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 201 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
            YW +P  N  + D++  +RADEA HR+VNH  ++++ +
Sbjct: 283 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLNQK 321


>gi|327303204|ref|XP_003236294.1| alternative oxidase [Trichophyton rubrum CBS 118892]
 gi|326461636|gb|EGD87089.1| alternative oxidase [Trichophyton rubrum CBS 118892]
          Length = 357

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 141/219 (64%), Gaps = 23/219 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 83
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKNWSDWVALGTVRLLRWGTDLATGYRHPKPGEPAPSKHFQMNERKWLIRFVFLETV 162

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 222

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 201 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
            YW +P  N  + D++  +RADEA HR+VNH  ++++ +
Sbjct: 283 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLNQK 321


>gi|407924740|gb|EKG17769.1| Alternative oxidase [Macrophomina phaseolina MS6]
          Length = 350

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 136/211 (64%), Gaps = 18/211 (8%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL--------------FFQRRYGCRAMMLETVAAVPG 88
           H    T+SDK AL  V+ LRW  DL                +R+Y  R + LE+VA VPG
Sbjct: 101 HREAKTWSDKFALMMVRVLRWGLDLASGYKHAKPGEPFQMSERKYLQRNVFLESVAGVPG 160

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MV  +L H  S+RR +   GWI+ LLEE+ NERMHL+TF+++ +P W+ R +V   QGVF
Sbjct: 161 MVAAVLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFLKMTEPGWFMRLMVLGAQGVF 220

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 205
           FNA F  YL+SP+  HR VGYLEEEA+ +YT  +++LD G +   E + AP IA DYW++
Sbjct: 221 FNAMFFSYLVSPRTCHRFVGYLEEEAVLTYTREIEDLDAGRLPMWEKMQAPDIAIDYWKM 280

Query: 206 PP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           P  N T++D++L +RADEA HR+VNH   ++
Sbjct: 281 PEGNRTMRDLLLYIRADEAKHREVNHTLGNL 311


>gi|66813644|ref|XP_641001.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
 gi|18147009|dbj|BAB82989.1| alternative oxidase [Dictyostelium discoideum]
 gi|60469023|gb|EAL67021.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
          Length = 337

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 133/187 (71%), Gaps = 1/187 (0%)

Query: 48  TFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSG 107
           + SD  A ++V  LR  ++LFF+ ++   A++LETVAAVPG+V GM LH K+LR  + S 
Sbjct: 102 SLSDNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNMQ-SN 160

Query: 108 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 167
            WIK L++E ENERMHL++FME+ KP   ER +V   Q +++N + + Y++SPK AHR  
Sbjct: 161 NWIKILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTAHRFT 220

Query: 168 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 227
           GYLEE+A+ +YT  L+++D G + N  AP IA +YW LP ++TL+D++LV+R DE+ HR 
Sbjct: 221 GYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDESDHRL 280

Query: 228 VNHYASD 234
           VNH  S+
Sbjct: 281 VNHEISN 287


>gi|452981520|gb|EME81280.1| hypothetical protein MYCFIDRAFT_211800 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 341

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 141/220 (64%), Gaps = 19/220 (8%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 92
           H    T+SD MAL  V++LRW  D             +R+Y  R + LE+VA VPGMV G
Sbjct: 94  HRNAKTWSDYMALGAVRTLRWGLDFATAYKKGEGQMTERKYMIRNIFLESVAGVPGMVAG 153

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H  S+RR +   GWI+ LLEE+ NERMHL+TF+++A+P W+ R +V   QGVFFNA+
Sbjct: 154 MLRHLHSMRRMKRDHGWIETLLEESYNERMHLLTFLKMAEPGWFMRFMVLGAQGVFFNAF 213

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP-N 208
           F+ YLISP+  HR VG LEEEA+ +YT  + +LD G +   E + AP IA  YW +P  +
Sbjct: 214 FVSYLISPRTCHRFVGLLEEEAVITYTREIADLDAGRLPMWEKMQAPDIAVKYWNMPEGH 273

Query: 209 STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
            T++D++L +RADE+ HR+VNH   +++      +E P P
Sbjct: 274 RTMRDLLLYIRADESKHREVNHTLGNLNQ-----KEDPNP 308


>gi|453084800|gb|EMF12844.1| mitochondrial alternative oxidase [Mycosphaerella populorum SO2202]
          Length = 353

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 20/235 (8%)

Query: 28  PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRA 77
           P   Y+   S+ + +     T+SD++AL  V++LRW  D+            +R+Y  R 
Sbjct: 91  PIYTYDQMTSVQVAQREC-KTWSDRIALGFVRTLRWGLDVASGYRKGSGQMSERQYMIRN 149

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE+VA VPGM  GML H  S+RR +   GWI++LLEE+ NERMHL+TF+++A+P W+ 
Sbjct: 150 IFLESVAGVPGMAAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLTFLKMAEPGWFM 209

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           + +V   QGVFFNA+F+ YLISPK  HR VG+LEEEA+ +YT  +++LD G++   E + 
Sbjct: 210 KIMVLGAQGVFFNAFFVSYLISPKTCHRFVGHLEEEAVLTYTREIQDLDAGHLPKWEKMV 269

Query: 195 APAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
           AP IA  YW +P +  T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 270 APDIAVKYWNMPADRRTMRDLLLYIRADESKHREVNHTLGNLDQ-----KEDPNP 319


>gi|298714367|emb|CBJ27424.1| alternative oxidase isoform A [Ectocarpus siliculosus]
          Length = 422

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/231 (45%), Positives = 143/231 (61%), Gaps = 12/231 (5%)

Query: 28  PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRW--------PTDLFFQRRYGCRAM 78
           P E + A+    +K  H  P    D +AL  V++LRW         T +  + +Y  R +
Sbjct: 128 PHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWFFDVLAGFKTGVIDEHKYLNRVI 187

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LETVA +PGMV G L H  SLRR     GWI  LLEEAENERMHL+TF+++ +P    R
Sbjct: 188 FLETVAGIPGMVAGTLRHLTSLRRMRRDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFR 247

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 195
             V   QGV +NA+FL YLISPK  HR VGY+EEEA+H+YT  L+++D   +    N+PA
Sbjct: 248 FAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDIDANKLPLFSNLPA 307

Query: 196 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESP 246
           PA+A  YW+L  ++  +D+VL VRADEA+H  VNH  +D+H + +Q   +P
Sbjct: 308 PAMAKSYWKLGDDAMFRDLVLAVRADEANHCVVNHTFADMHQEFKQDAVNP 358


>gi|326471371|gb|EGD95380.1| alternative oxidase [Trichophyton tonsurans CBS 112818]
 gi|326479484|gb|EGE03494.1| alternative oxidase [Trichophyton equinum CBS 127.97]
          Length = 357

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/219 (47%), Positives = 141/219 (64%), Gaps = 23/219 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 83
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKNWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPSKHFQMNERKWLIRFVFLETV 162

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V  
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLSFLKLAEPGWFMRLMVLG 222

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 201 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
            YW +P  N  + D++  +RADEA HR+VNH  ++++ +
Sbjct: 283 KYWNMPKGNQKIVDLLYYIRADEAKHREVNHTLANLNQK 321


>gi|154281621|ref|XP_001541623.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
 gi|150411802|gb|EDN07190.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
          Length = 357

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 138/218 (63%), Gaps = 25/218 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 81
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 198
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N  AP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQAAPDI 280

Query: 199 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 318


>gi|119480199|ref|XP_001260128.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
 gi|119408282|gb|EAW18231.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
          Length = 345

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 22/218 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 92  HREAKNWSDWVALGTVRVLRWGMDLVTGYRHPKPGQEHDAKFKMTEQKWLTRFVFLESVA 151

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 152 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 211

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+++ G +   E + AP IA  
Sbjct: 212 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIEAGKLPDWEELDAPEIAVQ 271

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
           YW +P     +KD++L VRADEA HR+VNH   ++ + 
Sbjct: 272 YWNMPEGQRKMKDLLLYVRADEAKHREVNHTLGNLQHN 309


>gi|378731675|gb|EHY58134.1| alternative oxidase AlxA [Exophiala dermatitidis NIH/UT8656]
          Length = 349

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 142/223 (63%), Gaps = 17/223 (7%)

Query: 30  EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL-------------FFQRRYGCR 76
           EA E  L      H    T SDK+A   V+ LRW TDL               +R++  R
Sbjct: 88  EATEDQLKKIEIAHRETRTLSDKIAYNMVRFLRWGTDLATGYRHDPNKPYIMNERKWLVR 147

Query: 77  AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 136
            + LETVA VPGMVGGML H +SLRR +   GWI+ LLE+A NERMHL+TF+++A+P W+
Sbjct: 148 FIFLETVAGVPGMVGGMLRHFRSLRRMKRDNGWIETLLEDAYNERMHLLTFLKMAEPGWF 207

Query: 137 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENV 193
            + ++   QGVF N +FL YL+SPK  HR VGYLEEEA  +YT  +++L+ G +   +N+
Sbjct: 208 MKLMIMGAQGVFANGFFLAYLVSPKICHRFVGYLEEEATKTYTYAIEDLENGKLPAWQNL 267

Query: 194 PAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            AP IA  YW++P  + T+KD++  +RADEA HR+++H   ++
Sbjct: 268 EAPDIAVSYWKMPEGHRTMKDLLYYIRADEAKHREIHHTLGNL 310


>gi|226292243|gb|EEH47663.1| alternative oxidase [Paracoccidioides brasiliensis Pb18]
          Length = 352

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 21/214 (9%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-----------------FFQRRYGCRAMMLETVAA 85
           H    T+SD +AL TV+ LRW TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYNHPGKSDQNEQFVMTEKKWIIRFIFLETVAG 159

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++AKP W+ R +V   Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPGWFMRLMVLGAQ 219

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDY 202
           GVFFN++F+ YLISP+  HR VGYLEEEA+ +YT  + +L+ G +    N  AP IA  Y
Sbjct: 220 GVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVAY 279

Query: 203 WRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           W +P N  T+ D++  +RADEA H +VNH  +++
Sbjct: 280 WHMPENKRTILDLLYYIRADEAKHCEVNHTLANL 313


>gi|225681058|gb|EEH19342.1| alternative oxidase [Paracoccidioides brasiliensis Pb03]
          Length = 352

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 21/214 (9%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-----------------FFQRRYGCRAMMLETVAA 85
           H    T+SD +AL TV+ LRW TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYKHPGKSDQNEQFVMTEKKWIIRFIFLETVAG 159

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++AKP W+ R +V   Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPGWFMRLMVLGAQ 219

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDY 202
           GVFFN++F+ YLISP+  HR VGYLEEEA+ +YT  + +L+ G +    N  AP IA  Y
Sbjct: 220 GVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVAY 279

Query: 203 WRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           W +P N  T+ D++  +RADEA H +VNH  +++
Sbjct: 280 WHMPENKRTILDLLYYIRADEAKHCEVNHTLANL 313


>gi|294955666|ref|XP_002788619.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239904160|gb|EER20415.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 305

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 135/215 (62%), Gaps = 12/215 (5%)

Query: 28  PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR--------AM 78
           P   +++ L  D++  H+ P T +DK A  +V+SLR   DL    R+G R         +
Sbjct: 74  PHPIWDSSLVNDVELTHYPPNTLADKAAYASVRSLRTVFDLLSGYRFGRRDAKLWIRRVV 133

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LETVA VPGMVG M  H +SLR+ E   GWI  LLEEAENERMHLM  + + KP    R
Sbjct: 134 FLETVAGVPGMVGAMNRHLRSLRKMERDFGWIHTLLEEAENERMHLMIALSLMKPGPLLR 193

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP---A 195
           ALV   QG FF  Y L Y +SP +AHR VGYLEEEA+ +YT  L+ +DKG I       A
Sbjct: 194 ALVLGAQGAFFTFYGLAYALSPNYAHRFVGYLEEEAVLTYTCLLQSVDKGQIPEFALQQA 253

Query: 196 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 230
           P +A DY++LP ++TL+DV   +RADE+HHRDVNH
Sbjct: 254 PFVAQDYYQLPSSATLRDVFACMRADESHHRDVNH 288


>gi|296813341|ref|XP_002847008.1| alternative oxidase [Arthroderma otae CBS 113480]
 gi|238842264|gb|EEQ31926.1| alternative oxidase [Arthroderma otae CBS 113480]
          Length = 358

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 141/219 (64%), Gaps = 23/219 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 83
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 104 HRETKNWSDWVALGTVRLLRWGTDLATGYKHPKPGEAAPSKHFQMNERKWLIRFVFLETV 163

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 164 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 223

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 224 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWSDLPAPDIAI 283

Query: 201 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
            YW +P  +  + D++  VRADEA HR+VNH  ++++ +
Sbjct: 284 KYWNMPEGHQKMLDLLYYVRADEAKHREVNHTLANLNQK 322


>gi|402471786|gb|EJW05340.1| hypothetical protein EDEG_00610 [Edhazardia aedis USNM 41457]
          Length = 266

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/196 (51%), Positives = 129/196 (65%), Gaps = 2/196 (1%)

Query: 37  SIDLKK--HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 94
            ID +K  H  P T +DK A  TVK LR   D +F++ Y  RA+ LETVAA+PGM+GG+ 
Sbjct: 60  QIDYRKGYHFKPITLTDKFAHSTVKFLRSFADFYFKKDYNKRAVALETVAAIPGMIGGLY 119

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLR  + +G  I  LL+EAENER HL+ F+ + KP   ++ L+ AVQ +FF+ YF+
Sbjct: 120 RHLYSLRSLKDNGEKISKLLKEAENERQHLLAFLAIKKPSIIDKILIHAVQPLFFSFYFM 179

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 214
            Y   PK AHR VGYLEEEAI SY  + +E+ KGNI+NV     A  YW++P N+ L D+
Sbjct: 180 LYGFMPKTAHRFVGYLEEEAIRSYDMYEEEILKGNIKNVDISEGAKSYWKMPDNAKLLDL 239

Query: 215 VLVVRADEAHHRDVNH 230
           V  VRADEA HRD NH
Sbjct: 240 VRAVRADEAAHRDANH 255


>gi|290997319|ref|XP_002681229.1| alternative oxidase [Naegleria gruberi]
 gi|284094852|gb|EFC48485.1| alternative oxidase [Naegleria gruberi]
          Length = 241

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 142/219 (64%), Gaps = 5/219 (2%)

Query: 26  FRPWEAYEADLSIDLKKH-----HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 80
           FRP+       + +L+K+     ++P   +DK+AL  +K LR     FF  RY   A++L
Sbjct: 18  FRPYGDNAHTNTQELEKYQVLRSYSPVDLTDKLALGIMKFLRVFVHGFFGNRYLHHAVVL 77

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ETVAAVPG+V G   H  SLR      G I  L+EEAENERMHL+T+ME+ KP + ER L
Sbjct: 78  ETVAAVPGIVAGGWRHFNSLRLMRRDHGHIGELMEEAENERMHLLTWMEMTKPTFLERML 137

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 200
           V   Q  F + Y + YL++P+F HR+VGYLEEEA+ +Y+EFL+ +DKG+I N  AP IA 
Sbjct: 138 VVGAQVGFTSFYTMAYLLNPRFCHRLVGYLEEEAVAAYSEFLEAIDKGDIPNCKAPEIAI 197

Query: 201 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
            YW L P ST++DVV+VVRADE  HRD NH  SD H  G
Sbjct: 198 KYWNLKPESTMRDVVVVVRADECMHRDYNHDMSDKHRSG 236


>gi|403337618|gb|EJY68031.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 278

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 135/203 (66%), Gaps = 11/203 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL--------FFQRRYGCRAMMLETVAAVPGMVGGML 94
           H  P  F DK AL  ++ +R   D+           +++  R + LET+A VPGMVGGM 
Sbjct: 42  HRKPELFRDKFALNLIRFMRTSFDIATGYNEKQMTTQKWLNRVIFLETIAGVPGMVGGMA 101

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H +SLR  +   GWI +LLEEAENER HL  F+++ +P    + ++ A QG+F+N YF+
Sbjct: 102 RHLQSLRSLKPDHGWIHSLLEEAENERTHLFIFLKLKQPTALFKLMIAAAQGIFYNLYFI 161

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
            YL++PK+ HR VGYLEEEA+H+YT  LK++D G++     +PAP +A +Y++L  N+ L
Sbjct: 162 SYLLAPKYCHRFVGYLEEEAVHTYTVLLKQIDNGSLPEWAEMPAPQMAREYYKLSENAKL 221

Query: 212 KDVVLVVRADEAHHRDVNHYASD 234
           +DV+L +RADE+ HR+VNHY +D
Sbjct: 222 RDVILSIRADESIHREVNHYFTD 244


>gi|301106717|ref|XP_002902441.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098315|gb|EEY56367.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 325

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 140/219 (63%), Gaps = 14/219 (6%)

Query: 31  AYEAD-LSIDLKKHHAPTTFSDKMALWTVKSLR----------WPTDLFFQRRYGCRAMM 79
            Y+ D +++  + HH   T S+++A   +K+LR           P     +R +  R + 
Sbjct: 93  VYDLDKITVMEETHHPVATMSERVAYLAIKTLRVGFDKVTRYRGPGGEMTERDWLHRCLF 152

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE++A VPGMVGGML H +SLRR +   GWI  LLEEAENERMHL+ F+ + +P W+ R 
Sbjct: 153 LESIAGVPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFLHLKQPGWFFRT 212

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAP 196
           LV   QGVFFN +FL YL+SPK  HR VGYLEEEA+ +YT  L++++ G+++      AP
Sbjct: 213 LVIGAQGVFFNGFFLTYLVSPKTCHRFVGYLEEEAVKTYTYLLQDIEDGHLDGWKQKQAP 272

Query: 197 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            IA  Y++LP  S + D++  +RADE +HRDVNH  +D+
Sbjct: 273 LIAQTYYKLPEGSNIYDMIKCIRADECNHRDVNHKFADL 311


>gi|402220460|gb|EJU00531.1| mitochondrial alternative oxidase [Dacryopinax sp. DJM-731 SS1]
          Length = 395

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 142/243 (58%), Gaps = 31/243 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDK----MALWTVKSLRWPTD------------ 66
           W  F P  + +   S+D+ +H  P TFSD+    +  +T KS  W +             
Sbjct: 92  WVLFHPVYSPKELHSVDVVRH-TPQTFSDRFIRDLVSFTRKSFDWISGYTQKELTLEDEK 150

Query: 67  -----------LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 115
                      +  ++ +  R + LE++A VPGMV   L H +SLR  +  GGWI  LLE
Sbjct: 151 LSVEELRKRRWILDEKAWLNRILFLESIAGVPGMVAATLRHLRSLRLMKRDGGWIHTLLE 210

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 175
           EAENERMHLMTFM V +P    R LV   QGVF+N +FL YLISPK  HR VG LEEEA+
Sbjct: 211 EAENERMHLMTFMAVKQPSLLFRTLVLGAQGVFYNLFFLSYLISPKLCHRFVGCLEEEAV 270

Query: 176 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
            +YT  +KEL+ G +   +NV AP IA DYWRL PN+TL DV+  VR+DE+ HR VNH  
Sbjct: 271 ITYTHAIKELEAGRLPEWDNVQAPKIAIDYWRLKPNATLLDVIYAVRSDESTHRFVNHSF 330

Query: 233 SDI 235
           +++
Sbjct: 331 ANL 333


>gi|302662223|ref|XP_003022769.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
 gi|291186732|gb|EFE42151.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
          Length = 262

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/219 (46%), Positives = 140/219 (63%), Gaps = 23/219 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-------------------FFQRRYGCRAMMLETV 83
           H    ++SD +AL TV+ LRW TDL                     +R++  R + LETV
Sbjct: 8   HRETKSWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPPKHFQMNERKWLIRFVFLETV 67

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NE MHL+TF+++A+P W+ R +V  
Sbjct: 68  AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNEHMHLLTFLKLAEPGWFMRLMVLG 127

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 128 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 187

Query: 201 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
            YW +P  N  + D++  +RADEA HR+VNH  ++++ +
Sbjct: 188 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLNQK 226


>gi|340960109|gb|EGS21290.1| hypothetical protein CTHT_0031430 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 221

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 118/167 (70%), Gaps = 6/167 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM +A+P 
Sbjct: 20  VRLIFLESIAGVPGMVAGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMRMAQPG 79

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  L E+++G++    
Sbjct: 80  WFMKTMIILSQGVFFNALFLTYLISPKITHRFVGYLEEEAVHTYTRLLGEIERGDLPKWS 139

Query: 191 -ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
             N P P IA +YWRLP    T+KD+++ +RADEA HR VNH  S +
Sbjct: 140 DPNFPVPQIAIEYWRLPEGKRTMKDLIMYIRADEAVHRGVNHTLSGL 186


>gi|315050338|ref|XP_003174543.1| alternative oxidase [Arthroderma gypseum CBS 118893]
 gi|311339858|gb|EFQ99060.1| alternative oxidase [Arthroderma gypseum CBS 118893]
          Length = 358

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 141/219 (64%), Gaps = 23/219 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 83
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 104 HRETKDWSDWVALGTVRLLRWGTDLATGYRHPKAGEPVPSGHFQMNERKWLIRFVFLETV 163

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 164 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 223

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   + +PAP IA 
Sbjct: 224 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEDGKLPAWKELPAPDIAI 283

Query: 201 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
            YW +P  +  + D++  VRADEA HR+VNH  ++++ +
Sbjct: 284 KYWNMPEGHQKMVDLLYYVRADEAKHREVNHTLANLNQK 322


>gi|255932617|ref|XP_002557865.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582484|emb|CAP80671.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 362

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/225 (44%), Positives = 141/225 (62%), Gaps = 22/225 (9%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYG 74
           EA +      H     +SD +AL TV+  RW  D                     + ++ 
Sbjct: 90  EAQMQSIQIAHRQTANWSDWIALGTVRFFRWGMDTATGYKHPKPGEQLPARFKMTEHKWL 149

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P 
Sbjct: 150 NRFVFLESIAGVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPG 209

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---E 191
           W+ R +V   QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  ++EL+ GN+   +
Sbjct: 210 WFMRVMVIGAQGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLPEWK 269

Query: 192 NVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           ++ AP IA  YW++P     +KD++L +RADEA HR+VNH  +++
Sbjct: 270 DLDAPEIAVKYWQMPEGQRKMKDLLLFIRADEAKHREVNHTLANL 314


>gi|70989575|ref|XP_749637.1| alternative oxidase AlxA [Aspergillus fumigatus Af293]
 gi|66847268|gb|EAL87599.1| alternative oxidase AlxA, putative [Aspergillus fumigatus Af293]
 gi|159129043|gb|EDP54157.1| alternative oxidase AlxA, putative [Aspergillus fumigatus A1163]
          Length = 352

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 137/218 (62%), Gaps = 22/218 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD +AL TV+ LRW  D                     ++++  R + LE+VA
Sbjct: 99  HREAKNWSDWVALGTVRVLRWGMDFVTGYRHPKPGQEHDAKFRMTEQKWLTRFIFLESVA 158

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 159 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 218

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+++ G +   E + AP IA  
Sbjct: 219 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWEKLDAPEIAVQ 278

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
           YW +P     ++D++L VRADEA HR+VNH   ++ + 
Sbjct: 279 YWNMPEGQRKMRDLLLYVRADEAKHREVNHTLGNLQHN 316


>gi|301106725|ref|XP_002902445.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098319|gb|EEY56371.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 316

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 136/206 (66%), Gaps = 13/206 (6%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 92
           HH  T   +++A   VK LR   D+            ++ +  R + LE+VA VPGMVGG
Sbjct: 79  HHPITKMHERVAHLAVKVLRTGFDVVSGYRGPGGGMTEKDWLNRCLFLESVAGVPGMVGG 138

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H +SLR+F+   GWI  LLEEAENERMHL+ FM + +P ++ R LV   QGVFFNA+
Sbjct: 139 MLRHLRSLRKFKRDYGWIHTLLEEAENERMHLLIFMNIKQPGYFFRTLVLGAQGVFFNAF 198

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNS 209
           FL YL+SPK  HR VGYLEEEA+ +YT  LK+++ G+++      AP IA  Y++LP ++
Sbjct: 199 FLTYLVSPKTCHRFVGYLEEEAVKTYTCLLKDIEDGHLDAWKEKKAPLIAQTYYKLPEDA 258

Query: 210 TLKDVVLVVRADEAHHRDVNHYASDI 235
           +L D+V  VRADE +HRDVNH  +++
Sbjct: 259 SLYDMVKCVRADECNHRDVNHEFANL 284


>gi|361131765|gb|EHL03417.1| putative Alternative oxidase, mitochondrial [Glarea lozoyensis
           74030]
          Length = 269

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 142/240 (59%), Gaps = 38/240 (15%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 75
           H  P  FSD++AL+ V+ LRW TD+                             +R++  
Sbjct: 9   HRKPADFSDRVALFMVRMLRWGTDIATGYKHDVESPKKIGDANVMAATKPYSMSERKWLT 68

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV  ML H  S+RR +   GWI+ LLEE++NERMHL+TF+++A+P W
Sbjct: 69  RFVFLESVAGVPGMVAAMLRHLNSMRRLKRDNGWIETLLEESQNERMHLLTFLKMAEPGW 128

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + + ++   QGVFFN+ FL YL+SP+  HR VGYLEEEA+ +Y+  + +L+ G +     
Sbjct: 129 FMKLMILGAQGVFFNSMFLSYLVSPRTCHRFVGYLEEEAVLTYSLAISDLENGKLPLWTH 188

Query: 191 ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
            N   P IA DYW++P +  T++D++L VRADEA HR+VNH   ++        E P P 
Sbjct: 189 PNFKVPDIAVDYWKIPEDKRTMRDLLLYVRADEAKHREVNHTLGNLDQN-----EDPNPF 243


>gi|24061751|gb|AAN39883.1| mitochondrial alternative oxidase [Emericella nidulans]
          Length = 354

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/215 (47%), Positives = 138/215 (64%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 84
           H     +SD +AL +V+ LRW  DL                FQ   + +  R + LE+VA
Sbjct: 101 HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 160

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NER+ L+TF+++A P W+ R +V   
Sbjct: 161 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERLFLLTFLKMAGPGWFMRLMVLGA 220

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E + AP IA  
Sbjct: 221 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 280

Query: 202 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           YW++P  N T+KD++L VRADEA HR+VNH   ++
Sbjct: 281 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNL 315


>gi|116196868|ref|XP_001224246.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
 gi|88180945|gb|EAQ88413.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
          Length = 368

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 142/237 (59%), Gaps = 35/237 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGCRAM 78
           H +P T  D +A   V+  RW TD+                          + ++  R +
Sbjct: 108 HRSPETVGDWVAWKLVRLARWATDIATGIGREQQVDMKNPTTAVAAEKPLTEAQWLVRVI 167

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHLMT M++A+  W+ +
Sbjct: 168 FLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESFNERMHLMTLMKMAEVGWFMK 227

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NVPA- 195
            ++   QGVFFNA FL YL+SPK  HR VGYLEEEA+H+YT  L+E+++G++   + PA 
Sbjct: 228 TMILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRLLREIEQGDLPKWSDPAF 287

Query: 196 --PAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
             P IA  YWR+P    T+KD++L +RADEA HR VNH  S++     + +E P P 
Sbjct: 288 QIPEIAITYWRMPEGKRTMKDLILYIRADEAVHRGVNHTLSNL-----KQKEDPNPF 339


>gi|392591621|gb|EIW80948.1| alternative oxidase [Coniophora puteana RWD-64-598 SS2]
          Length = 382

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 136/242 (56%), Gaps = 30/242 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTD---------------- 66
           W  F P    E   ++D+  H    T SDK A   V+  RW  D                
Sbjct: 95  WVLFHPVYTPEEMKAVDVL-HRDAKTLSDKFASSLVRLARWGFDFVSGYKHKPIPPNHDM 153

Query: 67  ----------LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
                     +  +R +  R + LE++A VPGMV  ML H  SLR      GWI  LLEE
Sbjct: 154 SLEELQKGGYVLTERAWLSRILFLESIAGVPGMVAAMLRHLGSLRLMRRDSGWIHTLLEE 213

Query: 117 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           AENERMHLMTFM + +P  + RALV   QGVFFN +FL Y+ISP+  HR VGYLEEEA+ 
Sbjct: 214 AENERMHLMTFMTLKQPSLFFRALVLGAQGVFFNVFFLSYMISPRICHRFVGYLEEEAVV 273

Query: 177 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +YT  ++E++ G +    N+PAP IA DYWRL P + L DV+  VR+DE+ HR VNH  +
Sbjct: 274 TYTRCIEEIEAGRLPAWSNMPAPEIAKDYWRLHPEANLLDVIYAVRSDESTHRFVNHSLA 333

Query: 234 DI 235
           ++
Sbjct: 334 NL 335


>gi|262348244|gb|ACY56340.1| alternative oxidase [Monascus ruber]
          Length = 350

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/231 (43%), Positives = 143/231 (61%), Gaps = 23/231 (9%)

Query: 32  YEADLSIDLKKHHAPT-TFSDKMALWTVKSLRWPTD------------------LFFQRR 72
           Y  D   D++  H  T  ++D +AL  V+ LRW  D                  +   ++
Sbjct: 85  YTYDQMRDVRVAHRSTKNWADWVALAAVRLLRWGMDTATGYRHPPKGQENVSKFVMTDKK 144

Query: 73  YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 132
           +  R + LE+VA VPGMVGG L H +SLR      GWI+ LLEEA NERMHL+TF+ VA+
Sbjct: 145 WITRFIFLESVAGVPGMVGGTLRHLRSLRFLRRDNGWIETLLEEAYNERMHLLTFLNVAR 204

Query: 133 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-- 190
           P  + R +V   QGVF+N +FL YLISP+  HR VGYLEEEA+ +YT  + ++++G +  
Sbjct: 205 PGLFMRLMVLGAQGVFYNGFFLSYLISPRICHRFVGYLEEEAVITYTRVISDIEEGRVPE 264

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
             N+PAP IA  YW++P  N T+KD++L VRADEA HR+VNH  ++++ + 
Sbjct: 265 WANMPAPEIAVQYWKMPEGNRTMKDLLLYVRADEAKHREVNHTLANLNQEN 315


>gi|169600395|ref|XP_001793620.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
 gi|111068642|gb|EAT89762.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
          Length = 348

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 34/236 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTD------------------LFFQRRYG-------CRA 77
           H    T SDK+AL  VK++RW  D                  +  QR+YG        R 
Sbjct: 88  HREAKTMSDKLALIAVKTMRWGLDTATGYKHEKAVALHQKDPVAAQRKYGMTAKKYMIRN 147

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE++A VPGMV GM+ H  S+RR +   GWI+ LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 148 VFLESIAGVPGMVAGMIRHLNSMRRMKRDNGWIETLLEESYNERMHLLVFLKMQQPGPFM 207

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R +V A QGV+ NA F  YLISP+  HR+VGYLEEEA+++YT  +K+LD G +   E + 
Sbjct: 208 RFMVLAAQGVWCNAMFFAYLISPRIVHRLVGYLEEEAVYTYTRQIKDLDAGRLPEWEKLQ 267

Query: 195 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
           AP IA DYW++P  N T++D++L +RADE+ HR+VNH   ++       +E P P 
Sbjct: 268 APQIAIDYWKMPEGNRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNPF 318


>gi|326427287|gb|EGD72857.1| alternative oxidase [Salpingoeca sp. ATCC 50818]
          Length = 319

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/204 (49%), Positives = 131/204 (64%), Gaps = 11/204 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 94
           H  P    D++A + ++ +R   D+F    +G         R + LETVA +PGMV G L
Sbjct: 104 HIDPKDRHDRVAYYLIRMIRRGFDIFSGYAFGPINEHKFLRRVIFLETVAGIPGMVAGSL 163

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H KSLR  +   GWI  LLEEAENERMHL+TFM++ +P    R +V A QGVF+N YFL
Sbjct: 164 RHLKSLRLMKRDHGWIHTLLEEAENERMHLLTFMQLREPGLLFRGMVLAAQGVFWNLYFL 223

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
           GYL SP+  HR VGYLEEEA+ +YT+ +K LD G +    N PAP IA  YW L  ++ +
Sbjct: 224 GYLASPRTCHRFVGYLEEEAVKTYTDAIKALDDGLMPTWTNKPAPDIAKTYWGLADDALM 283

Query: 212 KDVVLVVRADEAHHRDVNHYASDI 235
           +DV+L VRADEA+HRDVNH  S +
Sbjct: 284 RDVLLAVRADEANHRDVNHTLSTL 307


>gi|295673346|ref|XP_002797219.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226282591|gb|EEH38157.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 352

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 136/214 (63%), Gaps = 21/214 (9%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-----------------FFQRRYGCRAMMLETVAA 85
           H    T+SD +AL TV+ LRW TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYKHPGKSDKNERFVMTEKKWIIRFIFLETVAG 159

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W  R +V   Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDHGWIETLLEEAYNERMHLLSFLKLAEPGWCMRLMVLGAQ 219

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDY 202
           GVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  + +L+ G +    N  AP IA  Y
Sbjct: 220 GVFFNTFFIAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVSY 279

Query: 203 WRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           W +P N  T+ D++  VRADEA H +VNH  +++
Sbjct: 280 WHMPENKRTILDLLYYVRADEAKHCEVNHTLANL 313


>gi|171676978|ref|XP_001903441.1| hypothetical protein [Podospora anserina S mat+]
 gi|51701291|sp|Q9C206.1|AOX_PODAS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|14280024|gb|AAK58849.1|AF321004_1 alternate oxidase precursor [Podospora anserina]
 gi|12584590|emb|CAC27396.1| alternative oxidase [Podospora anserina]
 gi|170936556|emb|CAP61216.1| unnamed protein product [Podospora anserina S mat+]
          Length = 363

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 147/247 (59%), Gaps = 35/247 (14%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 68
           E ++   + +H  P + SD +A   V+  RW TD+                         
Sbjct: 93  EEEMLAVVPQHRKPGSLSDWLAWKLVRLCRWGTDIATGIKPEQQVDKSNPTTAVAAQKPL 152

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
            + ++  R + LE++A VPGMV GML H +SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 153 TEAQWLVRFIFLESIAGVPGMVAGMLRHLESLRRLKRDNGWIETLLEESYNERMHLLTFM 212

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           ++ +P W+ + ++   QGVFFNA FL YLISP+  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 213 KMCEPGWFMKTMILGAQGVFFNAMFLSYLISPRITHRFVGYLEEEAVHTYTRCIREIEQG 272

Query: 189 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           ++      N   P +A  YW++P    T++D++L +RADEA HR VNH  S++++     
Sbjct: 273 DLPKWSDPNFQIPDLAVTYWKMPEGKRTMRDLILYIRADEAVHRGVNHTLSNLNH----- 327

Query: 243 RESPAPL 249
           +E P P 
Sbjct: 328 KEDPNPF 334


>gi|115400946|ref|XP_001216061.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114190002|gb|EAU31702.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 324

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 103/223 (46%), Positives = 139/223 (62%), Gaps = 21/223 (9%)

Query: 28  PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL----------------FFQR 71
           P    E  LS+ +  H    T SDK+AL TV+ LRW  D                   ++
Sbjct: 54  PVYTQEQILSVQIA-HRNAKTISDKLALGTVRFLRWGMDFVTGYRPNTSANPHANTMTEK 112

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
           ++  R + LE+VA VPGMV GML H KS+RR +   GWI+ LLEEA NERMHL+TF+ +A
Sbjct: 113 KWITRFIFLESVAGVPGMVAGMLRHLKSIRRMKRDYGWIETLLEEAYNERMHLLTFLNLA 172

Query: 132 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI- 190
           +P  + R +V A Q VFF+A+F  YL+SP+  HR VGYLEEEA+ +YT+ +K+L+ G + 
Sbjct: 173 EPSRFMRLMVLASQMVFFSAFFTAYLVSPRICHRFVGYLEEEAVITYTKAIKDLENGLLL 232

Query: 191 --ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNH 230
             EN+ AP IA  YW +P     ++ ++L VRADEA HRDVNH
Sbjct: 233 DWENLQAPPIAIKYWNMPEGKRCMRSLLLHVRADEAKHRDVNH 275


>gi|134079505|emb|CAK46037.1| unnamed protein product [Aspergillus niger]
          Length = 310

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 136/215 (63%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H      SDK+AL  V+ LRW TD                     +R++  R + LE+VA
Sbjct: 57  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 116

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H KS+RR +   GWI++L++EA NERMHL+TF+++A P    R +V A 
Sbjct: 117 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 176

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFNA+F+ YL+SPK  HR VGYLEEEA+ +YT  +++L  G +   +N+ AP IA  
Sbjct: 177 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 236

Query: 202 YWRLPPNST-LKDVVLVVRADEAHHRDVNHYASDI 235
           YWR+P     + D++L VRADEA HR+VNH   ++
Sbjct: 237 YWRMPEGKQRMVDLLLYVRADEAKHREVNHTLGNL 271


>gi|317033065|ref|XP_001394812.2| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 300

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/228 (45%), Positives = 139/228 (60%), Gaps = 27/228 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H      SDK+AL  V+ LRW TD                     +R++  R + LE+VA
Sbjct: 47  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 106

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H KS+RR +   GWI++L++EA NERMHL+TF+++A P    R +V A 
Sbjct: 107 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 166

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFNA+F+ YL+SPK  HR VGYLEEEA+ +YT  +++L  G +   +N+ AP IA  
Sbjct: 167 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 226

Query: 202 YWRLPPNST-LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
           YWR+P     + D++L VRADEA HR+VNH   ++        E P P
Sbjct: 227 YWRMPEGKQRMVDLLLYVRADEAKHREVNHTLGNLDQH-----EDPNP 269


>gi|167518319|ref|XP_001743500.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778599|gb|EDQ92214.1| predicted protein [Monosiga brevicollis MX1]
          Length = 220

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 92
           + H  P   SD++AL  ++ +R   D F    +G         RA+ LETVA +PGMV G
Sbjct: 3   QTHIEPKDLSDRVALTAIRIIRKGFDFFSGYMFGPINETKFLRRAIFLETVAGIPGMVAG 62

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
            L H +SLR  +   GWI  LLEEAENERMHL+TF +V +P    R++V A QG+ +NAY
Sbjct: 63  SLRHLRSLRGMQRDNGWIHTLLEEAENERMHLLTFTKVKQPGIIFRSMVLAAQGIMWNAY 122

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS 209
           F+ YL+SP+  HR +GYLEEEA+ +Y+  ++ LDKG +    N  AP IA  YW L  ++
Sbjct: 123 FVAYLVSPRTCHRFIGYLEEEAVKTYSHAIEALDKGMMPTWNNKEAPEIAKTYWGLADDA 182

Query: 210 TLKDVVLVVRADEAHHRDVNHYASDI 235
            ++DV+L VRADEA+HRDVNH  S +
Sbjct: 183 LMRDVLLAVRADEANHRDVNHTLSTL 208


>gi|440633254|gb|ELR03173.1| hypothetical protein GMDG_05999 [Geomyces destructans 20631-21]
          Length = 388

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/249 (41%), Positives = 148/249 (59%), Gaps = 37/249 (14%)

Query: 33  EADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDL------------------------ 67
           E  ++ +++ +H  P   SD+ AL+ ++ LR  TD+                        
Sbjct: 113 EEQMTTNIRFEHRNPEDMSDRFALFLMRMLRKGTDIATGYSHNVTSAATASDPTALESTK 172

Query: 68  ---FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
                +R++  R + LE+VA VPGMV GML H  SLRR +   GWI+ LLEEA NERMHL
Sbjct: 173 PYKMSERKWLIRFLFLESVAGVPGMVAGMLRHLSSLRRMQRDNGWIETLLEEAYNERMHL 232

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           +TF+++A+P W+ R +    QGVFFN+ F+ YLISP+ AHR VGYLEEEA+ +Y+  L +
Sbjct: 233 LTFLKMAEPGWFMRLMCLGAQGVFFNSMFVAYLISPRTAHRFVGYLEEEAVLTYSLVLAD 292

Query: 185 LDKGNI---ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           L+ G +   E + AP IA +YW++P    T+KD++L VRADEA HR+VNH   ++  +  
Sbjct: 293 LEAGKLPKWEGLQAPDIAIEYWKMPEGKRTVKDLILYVRADEAKHREVNHTLGNLKQE-- 350

Query: 241 QLRESPAPL 249
              E P P 
Sbjct: 351 ---EDPNPF 356


>gi|169770083|ref|XP_001819511.1| alternative oxidase [Aspergillus oryzae RIB40]
 gi|83767370|dbj|BAE57509.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391864037|gb|EIT73335.1| alternative oxidase [Aspergillus oryzae 3.042]
          Length = 353

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 139/216 (64%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 84
           H     ++D +AL TV+ LRW  D                 FQ   +++  R + LE+VA
Sbjct: 100 HRETKDWADWVALGTVRLLRWGMDFVTGYRHPPPGKEHEAKFQMTEQKWLTRFVFLESVA 159

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 160 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 219

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +++++ G +     + AP IA  
Sbjct: 220 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLEAPEIAVQ 279

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    T+KD+++ VRADEA HR+VNH   +++
Sbjct: 280 YWKMPEGQRTMKDLLMYVRADEAKHREVNHTLGNLN 315


>gi|350631533|gb|EHA19904.1| hypothetical protein ASPNIDRAFT_39327 [Aspergillus niger ATCC 1015]
          Length = 345

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 136/215 (63%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H      SDK+AL  V+ LRW TD                     +R++  R + LE+VA
Sbjct: 92  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 151

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H KS+RR +   GWI++L++EA NERMHL+TF+++A P    R +V A 
Sbjct: 152 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 211

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFNA+F+ YL+SPK  HR VGYLEEEA+ +YT  +++L  G +   +N+ AP IA  
Sbjct: 212 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 271

Query: 202 YWRLPPNST-LKDVVLVVRADEAHHRDVNHYASDI 235
           YWR+P     + D++L VRADEA HR+VNH   ++
Sbjct: 272 YWRMPEGKQRMVDLLLYVRADEAKHREVNHTLGNL 306


>gi|121712010|ref|XP_001273620.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
 gi|119401772|gb|EAW12194.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
          Length = 333

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/243 (41%), Positives = 147/243 (60%), Gaps = 38/243 (15%)

Query: 39  DLKK----HHAPTTFSDKMALWTVKSLRWPTDL-------------------------FF 69
           D+KK    H    TFSD++AL T++ LR   DL                           
Sbjct: 65  DMKKVGIAHRETRTFSDRVALATIRMLRSGFDLVSGYRHDQAVALHKKDPATAQQKYAMT 124

Query: 70  QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           + +Y  R + LE++A VPGMVGGML H +SLRR +   GWI+ LLEE+ NERMHL+TF++
Sbjct: 125 EEKYLIRNIFLESIAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEESYNERMHLLTFLQ 184

Query: 130 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 189
           +A+P  + R LV   QGVFFNA+F+ YL++P   HR VGYLEEEA+ +YT  + +++ G 
Sbjct: 185 MAEPGLFLRLLVLGAQGVFFNAFFIAYLVNPVICHRFVGYLEEEAVITYTREIADIEAGK 244

Query: 190 I---ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 245
           +   EN+ AP IA  YW +P  + +++D++L +RADEA HR+VNH   ++ +     +E 
Sbjct: 245 LPKWENLQAPEIAVKYWNMPEGHRSMRDLLLYIRADEAKHREVNHTFGNLEW-----KED 299

Query: 246 PAP 248
           P P
Sbjct: 300 PNP 302


>gi|367046356|ref|XP_003653558.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
 gi|347000820|gb|AEO67222.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
          Length = 367

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/224 (44%), Positives = 131/224 (58%), Gaps = 30/224 (13%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGCRAM 78
           H  P T  D +A   V+  RW TDL                          + ++  R +
Sbjct: 107 HREPKTIGDWVAWKLVRLARWATDLATGIGREQQVDMKNPTTAVAAEKPLTEAQWLVRII 166

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+ F  +A+P W+ +
Sbjct: 167 FLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLVFTRMAEPGWFMK 226

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENV 193
            ++   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  LKE++ G++        
Sbjct: 227 TMILGAQGVFFNAMFLSYLISPKICHRFVGYLEEEAVHTYTRLLKEIENGDLPKWSNPKF 286

Query: 194 PAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
             P IA  YWR+P    T++D++L VRADEA HR VNH   +++
Sbjct: 287 EVPEIAATYWRMPEGKRTMRDLILYVRADEAVHRGVNHTLGNLN 330


>gi|330790443|ref|XP_003283306.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
 gi|325086731|gb|EGC40116.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
          Length = 348

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 101
           K + P T  D  A +TV  L+  +++ F  ++   A++LE++A+VPG+ GG++LH ++LR
Sbjct: 79  KFYEPKTIGDHFAYYTVIGLKKFSEIMFTNKHINFAIVLESIASVPGLCGGVILHLRALR 138

Query: 102 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
             E S  WIK L++EAENER+HLM F+E+ K   +ER LV   Q + +  YF+GY+ISPK
Sbjct: 139 TME-SCSWIKTLMDEAENERIHLMVFIELTKATLFERILVTMAQFIVWFLYFIGYIISPK 197

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
             HR+V YLE EA+ +YT F+K++D G IENVPA  +A +YW L  ++TL+D++LV+R D
Sbjct: 198 TMHRIVSYLEYEAVKTYTNFIKDIDLGLIENVPASKLAIEYWGLDNDATLRDMILVIRQD 257

Query: 222 EAHHRDVNHYAS 233
           E  H  VNH  S
Sbjct: 258 EVDHNIVNHQIS 269


>gi|258574597|ref|XP_002541480.1| alternative oxidase [Uncinocarpus reesii 1704]
 gi|237901746|gb|EEP76147.1| alternative oxidase [Uncinocarpus reesii 1704]
          Length = 360

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 140/217 (64%), Gaps = 24/217 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL--------------------FFQRRYGCRAMMLET 82
           H     +SD +AL TV+ LRW  DL                      +R++  R + LET
Sbjct: 105 HRQTKDWSDWIALGTVRMLRWGMDLATGYKHPPTGKEQKNVRPFSMDERKWIIRFIFLET 164

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V 
Sbjct: 165 VAAVPGMVGGMLRHMRSLRRMKRDLGWIETLLEEAYNERMHLLTFLKLAEPGWFMRFMVL 224

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 199
             QGVFFNA+F+ YL+SP+  HR VGYLEEEA+ +YT  + +L+ G +   +++ AP IA
Sbjct: 225 GAQGVFFNAFFISYLLSPRTCHRFVGYLEEEAVLTYTHAINDLESGKLPRWQDMKAPDIA 284

Query: 200 TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
             YW++P  +  + D++  +RADEA HR+VNH  +++
Sbjct: 285 VTYWKMPEGHQKILDLLYYIRADEAKHREVNHTLANL 321


>gi|38018226|gb|AAR08189.1| mitochondrial cyanide-resistant terminal oxidase [Penicillium
           chrysogenum]
          Length = 361

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 137/215 (63%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD +AL TV+  RW  D                     + ++  R + LE+VA
Sbjct: 99  HRQAANWSDWVALGTVRIFRWGMDTATGYRHPKPGQELPDMFKMTEHKWMNRFIFLESVA 158

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 159 GVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVIGA 218

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  ++EL+ G +   +++ AP IA  
Sbjct: 219 QGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGKLPQWDDLDAPEIAIK 278

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           YW++P     +KD+++ VRADEA HR+VNH  +++
Sbjct: 279 YWQMPEGQRKMKDLLMFVRADEAKHREVNHTLANL 313


>gi|380095711|emb|CCC07185.1| putative alternative oxidase [Sordaria macrospora k-hell]
          Length = 341

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 138/226 (61%), Gaps = 14/226 (6%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRR---YGCRAMMLETVAAVPGM 89
           E +++  + +H  P T  D +A   V+  RW TD+    R      R + LE++A VPGM
Sbjct: 91  EKEMTSVVPEHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQLVRFIFLESIAGVPGM 150

Query: 90  VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 149
           V GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P    + L+   QGVFF
Sbjct: 151 VAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFF 210

Query: 150 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATDYWR 204
           NA FL YLISPK  HR VGYLEEEA+H+YT  + E+++G++     E    P +A  YWR
Sbjct: 211 NAMFLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKWRDERFQIPEMAVRYWR 270

Query: 205 LPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
           +P    T+KD++  VRADEA HR VNH  S++       +E P P 
Sbjct: 271 MPEGKRTMKDLIYYVRADEAVHRGVNHTLSNLDQ-----KEDPNPF 311


>gi|242765090|ref|XP_002340904.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724100|gb|EED23517.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 362

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 140/233 (60%), Gaps = 31/233 (13%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDL----------------------FFQRRYGCRAMM 79
           +H    T+SD+ AL  V+ LRW  D                         +R++  R + 
Sbjct: 104 EHRKARTWSDRFALAMVQGLRWGMDFVTGYRHPPKGDVKDPKAVTKFTMTERQWLNRVLF 163

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE+VA VPGMV GML H +SLR      GWI+ LLEEA NERMHL+TFM++A+P  + R 
Sbjct: 164 LESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMKIAEPGLFMRL 223

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 196
           +V   QGV+FN  F+ YLISP+  HR VGYLEEEA+ +YT  ++E++ GN+   E + AP
Sbjct: 224 MVLGAQGVYFNGLFISYLISPRTCHRFVGYLEEEAVLTYTRVIQEIEAGNLPEWEKMEAP 283

Query: 197 AIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
            IA  YW++P  + ++ D++L VRADEA HR+VNH   +++      +E P P
Sbjct: 284 EIAVKYWQMPEGHRSMLDLMLYVRADEAKHREVNHTLGNLNQ-----KEDPNP 331


>gi|303312147|ref|XP_003066085.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105747|gb|EER23940.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320040066|gb|EFW22000.1| alternative oxidase [Coccidioides posadasii str. Silveira]
          Length = 360

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 140/217 (64%), Gaps = 24/217 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL--------------------FFQRRYGCRAMMLET 82
           H     +SD +AL TV+ LRW  DL                      +R++  R + LET
Sbjct: 105 HRQTRDWSDWVALGTVRMLRWGMDLATGYKHPPAGKEQKKVKPFTMDERKWIIRFIFLET 164

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V 
Sbjct: 165 VAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLKLAEPGWFMRLMVL 224

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 199
             QGVFFNA+FL YL+SP+  HR VGYLEEEA+ +YT  + +L+ G +   +++ AP IA
Sbjct: 225 GAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGKLPRWKDMNAPDIA 284

Query: 200 TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
             YW++P  +  + D++  VRADEA HR+VNH  +++
Sbjct: 285 VTYWKMPEGHRKILDLLYYVRADEAKHREVNHTLANL 321


>gi|390364451|ref|XP_785497.3| PREDICTED: alternative oxidase, mitochondrial-like
           [Strongylocentrotus purpuratus]
          Length = 289

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 131/210 (62%), Gaps = 11/210 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF--------FQRRYGCRAMMLETVAAVPGMVGGML 94
           H+ P    DK A +  K+LR   D F         +R++  R + LETVA VPGMV  M 
Sbjct: 74  HNPPKERVDKAAYFACKALRANFDFFSGFSWGKRTERKWIYRIIFLETVAGVPGMVAAMS 133

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H +SLRR +   GWI  LLEEAENERMHLMT +E+ +P  + R +V   QG+F N +F+
Sbjct: 134 RHLRSLRRMQRDHGWIHTLLEEAENERMHLMTALEIKQPSLFFRLMVLGAQGIFVNMFFI 193

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
            YL+SP+F HR VGYLEEEA+ +YT+ LK+L    +   ++  AP I+ +YW+L P++  
Sbjct: 194 SYLVSPRFCHRFVGYLEEEAVITYTKLLKDLRADALPKWKDRIAPEISINYWKLRPDADY 253

Query: 212 KDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
            D+   +RADEAHHR+VNH  SDI    R 
Sbjct: 254 IDLFRAIRADEAHHREVNHTLSDIKPDDRN 283


>gi|328862264|gb|EGG11365.1| hypothetical protein MELLADRAFT_74045 [Melampsora larici-populina
           98AG31]
          Length = 387

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 144/247 (58%), Gaps = 39/247 (15%)

Query: 23  WNCFRPWEAYEADLSIDLKK----HHAPTTFSDKMALWTVKSLRWPTD------------ 66
           W  F P   YE D   +LK+     H P   SD++    VK +R+  D            
Sbjct: 91  WCLFHP--VYEPD---ELKQVKVVRHEPKDISDRIVAGLVKLIRFGFDTATRYKHPIEHQ 145

Query: 67  ------LFFQRRYG---------CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK 111
                 L   R+ G          R + LE++A VPGMV  ML H KSLR     GGWI+
Sbjct: 146 ENSGKSLSEMRKAGLVMTPQQWMARILFLESIAGVPGMVAAMLRHFKSLRMSGRDGGWIR 205

Query: 112 ALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 171
            LLEEAENERMHL+TFM++ +P    RA+V   QGVF N +FL Y++SP+ AHR VG LE
Sbjct: 206 TLLEEAENERMHLLTFMKIRQPGIIFRAMVLGAQGVFANLFFLSYMVSPRAAHRFVGILE 265

Query: 172 EEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228
           EEA+ +Y+  ++EL+ G +   EN+PAP IA DYWRL P++ + DV+  VRADE++HR V
Sbjct: 266 EEAVVTYSLAIRELETGRLPEWENMPAPQIAKDYWRLLPDAKMIDVLYAVRADESNHRFV 325

Query: 229 NHYASDI 235
           NH  ++I
Sbjct: 326 NHSLANI 332


>gi|425778082|gb|EKV16227.1| Alternative oxidase [Penicillium digitatum Pd1]
 gi|425780618|gb|EKV18624.1| Alternative oxidase [Penicillium digitatum PHI26]
          Length = 361

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 139/215 (64%), Gaps = 22/215 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------FFQ---RRYGCRAMMLETVA 84
           H   + ++D +AL TV+  RW  D                 FQ    ++  R + LE+VA
Sbjct: 99  HRQASNWADWVALGTVRMFRWGMDTATGYRHPKPGQELSGIFQMTEHKWLNRFIFLESVA 158

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 159 GVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVIGA 218

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +Y+  ++EL+ G +   +++ AP IA  
Sbjct: 219 QGVFFNGFFLAYLISPRICHRFVGYLEEEAVITYSRAIEELETGKLPEWKDLDAPEIAIK 278

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
           YW++P     ++D++L VRADEA HR+VNH  +++
Sbjct: 279 YWQMPEGQRQMRDLLLFVRADEAKHREVNHTLANL 313


>gi|119193348|ref|XP_001247280.1| alternative oxidase, mitochondrial precursor [Coccidioides immitis
           RS]
 gi|392863474|gb|EAS35773.2| alternative oxidase, mitochondrial [Coccidioides immitis RS]
          Length = 360

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 139/217 (64%), Gaps = 24/217 (11%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL--------------------FFQRRYGCRAMMLET 82
           H     +SD  AL TV+ LRW  DL                      +R++  R + LET
Sbjct: 105 HRQTRDWSDWAALGTVRMLRWGMDLATGYKHPPAGKEQKKVKPFTMDERKWIIRFIFLET 164

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VAAVPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V 
Sbjct: 165 VAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLKLAEPGWFMRLMVL 224

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 199
             QGVFFNA+FL YL+SP+  HR VGYLEEEA+ +YT  + +L+ G +   +++ AP IA
Sbjct: 225 GAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGKLPRWKDMNAPDIA 284

Query: 200 TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
             YW++P  +  + D++  VRADEA HR+VNH  +++
Sbjct: 285 VTYWKMPEGHRKILDLLYYVRADEAKHREVNHTLANL 321


>gi|170090173|ref|XP_001876309.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649569|gb|EDR13811.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 378

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 118/183 (64%), Gaps = 3/183 (1%)

Query: 57  TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
           TV  LR    L   R +  R ++LE++A VPGMV   L H  SLR      GWI   LEE
Sbjct: 143 TVAQLRKAGYLLDDRAWLTRILVLESIAGVPGMVAATLRHLTSLRLMRRDSGWIHTCLEE 202

Query: 117 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           AENERMHLMTFM + KP    RA+V A QGVF+N +F  YLISP+  HR VGYLEEEA+ 
Sbjct: 203 AENERMHLMTFMTLRKPSIILRAIVLAAQGVFYNLFFFSYLISPRICHRFVGYLEEEAVV 262

Query: 177 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +YT  + +L+ G I    N PAP I+ DYWRLPP++ L DV+  VR+DE  HR VNH  +
Sbjct: 263 TYTRCIADLEAGRIPEWSNKPAPEISIDYWRLPPDAKLLDVLYAVRSDETTHRFVNHSLA 322

Query: 234 DIH 236
           +++
Sbjct: 323 NLN 325


>gi|409079050|gb|EKM79412.1| AOX alternative oxidase mitochondrial [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 375

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 124/195 (63%), Gaps = 6/195 (3%)

Query: 44  HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 103
           H  T     M+L+    LR    L   + +  R + LE++A VPGMV   L H  SLR  
Sbjct: 129 HMKTPPDPNMSLY---ELRKAGYLLDDKGWLSRILFLESIAGVPGMVAATLRHLTSLRLM 185

Query: 104 EHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFA 163
              GGWI   LEEAENERMHLMTFM + KP  + RALV   QGVF+N +FL YL+SP+  
Sbjct: 186 RRDGGWIHTCLEEAENERMHLMTFMSLRKPSIFFRALVLGAQGVFYNLFFLSYLVSPRIC 245

Query: 164 HRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRA 220
           HR VGYLEEEA+++YT  + +L+ G I    ++PAP IA DYWRLP N+ L DV+  VR+
Sbjct: 246 HRFVGYLEEEAVYTYTHCIADLEAGRIPEWSDMPAPQIAIDYWRLPKNAKLLDVIYAVRS 305

Query: 221 DEAHHRDVNHYASDI 235
           DE+ HR VNH  +++
Sbjct: 306 DESTHRFVNHSFANL 320


>gi|392566332|gb|EIW59508.1| alternative oxidase [Trametes versicolor FP-101664 SS1]
          Length = 315

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/254 (41%), Positives = 144/254 (56%), Gaps = 31/254 (12%)

Query: 16  DDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL-------- 67
           D   +  W  F P   ++   S+++  H    TFSDK+A   V   RW  DL        
Sbjct: 17  DHNIKGDWVLFHPVYTHDELRSVEVL-HRQAKTFSDKIAYSFVHLARWGFDLVSGYKHKP 75

Query: 68  -------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 108
                                + ++  R + LE++AAVPGMV   L H +SLR  +   G
Sbjct: 76  LPPNADKMSLQELQDGGYLMNEAQWLKRILFLESIAAVPGMVAAALRHLRSLRLMQRDSG 135

Query: 109 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 168
           WI  LLEEAENERMHLMTFM +  P    RA+V A QGVF+NA+FL YLISP  +HR VG
Sbjct: 136 WIHTLLEEAENERMHLMTFMTLKNPSILFRAMVIAAQGVFYNAFFLSYLISPSTSHRFVG 195

Query: 169 YLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 225
           +LEEEA+ +YT  ++E++ G++    ++PAP IA DYWRL P++   DV+  VR+DE+ H
Sbjct: 196 HLEEEAVITYTRCIQEIEAGHLPKWADLPAPEIAKDYWRLGPDAKFLDVIYAVRSDESTH 255

Query: 226 RDVNHYASDIHYQG 239
           R VNH  + + Y+ 
Sbjct: 256 RFVNHSLASLKYES 269


>gi|426195957|gb|EKV45886.1| AOX alternative oxidase mitochondrial precursor [Agaricus bisporus
           var. bisporus H97]
          Length = 356

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 124/195 (63%), Gaps = 6/195 (3%)

Query: 44  HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 103
           H  T     M+L+    LR    L   + +  R + LE++A VPGMV   L H  SLR  
Sbjct: 110 HMKTPPDPNMSLY---ELRKAGYLLDDKGWLSRILFLESIAGVPGMVAATLRHLTSLRLM 166

Query: 104 EHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFA 163
              GGWI   LEEAENERMHLMTFM + KP  + RALV   QGVF+N +FL YL+SP+  
Sbjct: 167 RRDGGWIHTCLEEAENERMHLMTFMSLRKPSIFFRALVLGAQGVFYNLFFLSYLVSPRIC 226

Query: 164 HRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRA 220
           HR VGYLEEEA+++YT  + +L+ G I    ++PAP IA DYWRLP N+ L DV+  VR+
Sbjct: 227 HRFVGYLEEEAVYTYTHCIADLEAGRIPEWSDMPAPQIAIDYWRLPKNAKLLDVIYAVRS 286

Query: 221 DEAHHRDVNHYASDI 235
           DE+ HR VNH  +++
Sbjct: 287 DESTHRFVNHSFANL 301


>gi|33327044|gb|AAQ08896.1| SHAM-sensitive alternative terminal oxidase isozyme II [Yarrowia
           lipolytica]
          Length = 349

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 132/217 (60%), Gaps = 23/217 (10%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------------------CRAMMLETV 83
           +H    TFSDK AL  ++++RW  DLF   R+                    R + LE++
Sbjct: 94  RHREAKTFSDKCALAAIRTMRWSFDLFTGYRHPKPGQENLKRFEMTPDKWYQRFLFLESI 153

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGM  H +SLR  +    WI+ LLEEA NERMHL+TF+++ KP ++ R ++  
Sbjct: 154 AGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKMHKPGYFMRTMILL 213

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAI 198
            QGVFFN +F+ YL+SP+  HR VGYLEEEA+ +YT  + ++D G +       V  P I
Sbjct: 214 GQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAGRLPEWEGHKVKIPEI 273

Query: 199 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           A DYW + PN T++D++  +RADEA H +VNH   ++
Sbjct: 274 AIDYWHMGPNPTMRDLIEYIRADEAKHCEVNHTLGNL 310


>gi|50550329|ref|XP_502637.1| YALI0D09933p [Yarrowia lipolytica]
 gi|49648505|emb|CAG80825.1| YALI0D09933p [Yarrowia lipolytica CLIB122]
          Length = 349

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 132/217 (60%), Gaps = 23/217 (10%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------------------CRAMMLETV 83
           +H    TFSDK AL  ++++RW  DLF   R+                    R + LE++
Sbjct: 94  RHREAKTFSDKCALAAIRTMRWSFDLFTGYRHPKPGQENLKRFEMTPDKWYQRFLFLESI 153

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMVGGM  H +SLR  +    WI+ LLEEA NERMHL+TF+++ KP ++ R ++  
Sbjct: 154 AGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKMHKPGYFMRTMILL 213

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAI 198
            QGVFFN +F+ YL+SP+  HR VGYLEEEA+ +YT  + ++D G +       V  P I
Sbjct: 214 GQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAGRLPEWEGHKVKIPEI 273

Query: 199 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           A DYW + PN T++D++  +RADEA H +VNH   ++
Sbjct: 274 AIDYWHMGPNPTMRDLIEYIRADEAKHCEVNHTLGNL 310


>gi|403375688|gb|EJY87819.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 273

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 129/204 (63%), Gaps = 11/204 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL--------FFQRRYGCRAMMLETVAAVPGMVGGML 94
           H  P  F D  A   V+  R   DL           +++  RA+ LETVA VPGMVGGM 
Sbjct: 43  HRKPDGFRDWFARTFVRFARGSFDLVSAYNEEKMSAQKWMTRAIFLETVAGVPGMVGGMT 102

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H KSLR  +   GWI  LLEEAENERMHL  F+E+ KP    +A +   QGVF+N YF+
Sbjct: 103 RHLKSLRSLKPDHGWIHNLLEEAENERMHLFIFLELKKPTPLFKAAIILTQGVFYNLYFI 162

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
            Y++ PK+ HR VGYLEEEA+H+YT  LK+LD G+I     +PAP  A +Y+ L  N+ +
Sbjct: 163 SYMLFPKYCHRFVGYLEEEAVHTYTVMLKQLDNGSIPEWSELPAPQNAREYYNLSENAKI 222

Query: 212 KDVVLVVRADEAHHRDVNHYASDI 235
           +DV+L +RADE+ HR+VNH  +D+
Sbjct: 223 RDVILSIRADESIHREVNHRFADL 246


>gi|219664359|gb|ACL31211.1| alternative oxidase [Crassostrea gigas]
          Length = 332

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 11/204 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 94
           H  P  F DK+A  +VK LR   DL          ++++  R   LETVA VPGMV  M 
Sbjct: 117 HKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKKWVLRICFLETVAGVPGMVAAMT 176

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLRR +   GWI  LLEEAENERMHLMT +++ +P W  R+ V   QG F   + +
Sbjct: 177 RHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSWLFRSGVIVSQGAFVTMFSI 236

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
            Y++SP+F HR VGYLEEEA+ +Y++ LK+++ G++   +   AP +A  YW+LP  +++
Sbjct: 237 AYMLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKHWQTKAAPDVAIRYWKLPETASM 296

Query: 212 KDVVLVVRADEAHHRDVNHYASDI 235
           KDVVL +RADEAHHR VNH  + +
Sbjct: 297 KDVVLAIRADEAHHRVVNHTLASM 320


>gi|46108920|ref|XP_381518.1| hypothetical protein FG01342.1 [Gibberella zeae PH-1]
          Length = 476

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 121/180 (67%), Gaps = 11/180 (6%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+     
Sbjct: 214 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 273

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
                P IA  YW++P  + T+KD++L +RADEA HR VNH   +++       E P P 
Sbjct: 274 PKFEIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNHTLGNLNQN-----EDPNPF 328


>gi|348682022|gb|EGZ21838.1| hypothetical protein PHYSODRAFT_488439 [Phytophthora sojae]
          Length = 305

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 136/227 (59%), Gaps = 14/227 (6%)

Query: 17  DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRR---- 72
           DG  WK     P    EA   I  + HH P    + +AL  VK+LR   DL    R    
Sbjct: 62  DGPTWKNPIPHPVYNLEAIDDIP-QTHHQPRKIHEYVALLGVKTLRLGFDLLSGYRGPGA 120

Query: 73  ------YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 126
                 +  R ++LETVA VPGMV GM  H +SLR  +   GWI  LLEEAENERMHL+ 
Sbjct: 121 AMTVQDWLNRCLLLETVAGVPGMVVGMAHHLRSLRSLKRDSGWIHTLLEEAENERMHLLI 180

Query: 127 FMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD 186
           FM + +P W  R +V A QGVFF A++L YL+SPK  HR VG+LEEEA+ +YT  L++++
Sbjct: 181 FMNMKQPGWGFRMMVLAAQGVFFPAFYLAYLVSPKTCHRFVGFLEEEAVKTYTNLLEDME 240

Query: 187 KGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 230
            G+++      AP I   Y+ LP ++ + D++  +RADEA+HRDVNH
Sbjct: 241 HGHLDEWCTTTAPLIGRSYYNLPEDAKVYDMIKCIRADEANHRDVNH 287


>gi|77820273|gb|ABB04277.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|77820275|gb|ABB04278.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|440794064|gb|ELR15235.1| alternative oxidase isoform B, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 370

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 138/221 (62%), Gaps = 15/221 (6%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGM 93
            H  P   +DK+AL TV+ +R+  D      +G         R + LETVA VPG V  +
Sbjct: 154 NHTPPENLTDKLALNTVRLMRFNFDWMSGYSWGKLTEADWLRRIIFLETVAGVPGSVAAI 213

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
           L H  SLRR +   GWI  LLEEAENERMHL+T +++ +P    R  V+  QG+FFN +F
Sbjct: 214 LRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGKIFRTAVWVTQGIFFNFFF 273

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNST 210
             YL+SP+F HR VGYLEEEA+ +YT  L +LD G +   ++ PAP IA  YW++  ++ 
Sbjct: 274 AAYLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPEWKDTPAPEIARQYWKMGDDAK 333

Query: 211 LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 251
            +DVV ++RADEAHHR+VNH  +++  +    +++P P G+
Sbjct: 334 WRDVVALIRADEAHHREVNHTFANLQLE----QDNPFPPGH 370


>gi|77820269|gb|ABB04275.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|77820271|gb|ABB04276.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|440802244|gb|ELR23175.1| alternative oxidase isoform A, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 374

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 138/221 (62%), Gaps = 15/221 (6%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGM 93
            H  P   +DK+AL TV+ +R+  D      +G         R + LETVA VPG V  +
Sbjct: 158 NHTPPENLTDKLALNTVRLMRFNFDWMSGYSWGKLTEADWLRRIIFLETVAGVPGSVAAI 217

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
           L H  SLRR +   GWI  LLEEAENERMHL+T +++ +P    R  V+  QG+FFN +F
Sbjct: 218 LRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGKIFRTAVWVTQGIFFNFFF 277

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNST 210
             YL+SP+F HR VGYLEEEA+ +YT  L +LD G +   ++ PAP IA  YW++  ++ 
Sbjct: 278 AAYLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPEWKDTPAPEIARQYWKMGDDAK 337

Query: 211 LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 251
            +DVV ++RADEAHHR+VNH  +++  +    +++P P G+
Sbjct: 338 WRDVVALIRADEAHHREVNHTFANLQLE----QDNPFPPGH 374


>gi|51701289|sp|Q8X1N9.1|AOX_BLUGR RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|18033103|gb|AAL56983.1|AF327336_1 alternative oxidase [Blumeria graminis]
          Length = 358

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 138/223 (61%), Gaps = 30/223 (13%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGCRAM 78
           H  P  FSD++AL+ V+ LR+ TDL                          +R++  R +
Sbjct: 97  HRTPKDFSDRIALYLVRFLRFSTDLATGYKHDPVTITENGEKVLKKPYRMSERKWLIRMV 156

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LE+VA VPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++AKP W+ +
Sbjct: 157 FLESVAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMAKPGWFMK 216

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA- 197
            ++   QGVFFN+ FL YLISP+  HR V YLEEEA+ +Y+  +++++ G +    +P  
Sbjct: 217 FMIIGAQGVFFNSMFLSYLISPRTCHRFVAYLEEEAVLTYSTAIQDIEAGLLPKWTSPEF 276

Query: 198 ----IATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
               +A  YW++P  N T++D++L +RADEA HR+VNH   ++
Sbjct: 277 RIPDLAVQYWKIPEGNRTMRDLLLYIRADEAKHREVNHTLGNL 319


>gi|405968665|gb|EKC33714.1| Alternative oxidase, mitochondrial [Crassostrea gigas]
          Length = 304

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 11/204 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 94
           H  P  F DK+A  +VK LR   DL          ++++  R   LETVA VPGMV  M 
Sbjct: 89  HKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKKWVLRICFLETVAGVPGMVAAMT 148

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLRR +   GWI  LLEEAENERMHLMT +++ +P W  R+ V   QG F   + +
Sbjct: 149 RHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSWLFRSGVIVSQGAFVTMFSI 208

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTL 211
            YL+SP+F HR VGYLEEEA+ +Y++ LK+++ G++++     AP +A  YW+LP  +++
Sbjct: 209 AYLLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKHWQIKAAPDVAIRYWKLPETASM 268

Query: 212 KDVVLVVRADEAHHRDVNHYASDI 235
           KDVVL +RADEAHHR VNH  + +
Sbjct: 269 KDVVLAIRADEAHHRVVNHTLASM 292


>gi|452002528|gb|EMD94986.1| hypothetical protein COCHEDRAFT_1168437 [Cochliobolus
           heterostrophus C5]
          Length = 356

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 140/235 (59%), Gaps = 34/235 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRW------------PTDL-------------FFQRRYGCRA 77
           H    T SDK+AL  VK LRW            P D+               + +Y  R 
Sbjct: 96  HREAKTMSDKVALIAVKVLRWGLDRVTGYKHPKPVDVDTKDPVAARKQFAMTEEKYLIRN 155

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 156 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQRPGPFM 215

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R +V   QGVFFNA F  YL+SP+  HR +GYLEEEA+ +YT  +K+LD+G +   E + 
Sbjct: 216 RLMVLGAQGVFFNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIKDLDEGRLPKWEKLE 275

Query: 195 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
           AP IA DYW +P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 276 APEIAIDYWHMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 325


>gi|336363765|gb|EGN92138.1| AOX, alternative oxidase mitochondrial precursor [Serpula lacrymans
           var. lacrymans S7.3]
 gi|336382841|gb|EGO23991.1| alternative oxidase, AOX [Serpula lacrymans var. lacrymans S7.9]
          Length = 384

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 139/245 (56%), Gaps = 30/245 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------- 67
           W  F P  + E   S+++  H    T SDK A   VK  RW  DL               
Sbjct: 95  WVLFHPVYSEEELKSVEVL-HREAKTISDKFACNLVKITRWGFDLASGYKHKPIPPNSNL 153

Query: 68  -----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
                        +R +  R + LETVA VPGMV  +L H  SLR      GWI  LLEE
Sbjct: 154 TLEELKKGGYILDERGWLRRILFLETVAGVPGMVAAVLRHLGSLRLMRRDSGWIHTLLEE 213

Query: 117 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           AENERMHLMTFM + KP  + RA+V   QGVF+N +FL Y+ISP+  HR VGYLEEEA+ 
Sbjct: 214 AENERMHLMTFMTLRKPSLFFRAMVLGAQGVFYNLFFLSYMISPRTCHRFVGYLEEEAVL 273

Query: 177 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +YT  ++E++ G +    ++ AP IA DYWRL P++ L DV+  VR+DE+ HR VNH  +
Sbjct: 274 TYTRCIEEIEAGRLPEWTDLSAPEIAKDYWRLAPDAKLLDVMYAVRSDESTHRFVNHSFA 333

Query: 234 DIHYQ 238
           +++ +
Sbjct: 334 NLNVK 338


>gi|51701293|sp|Q9P429.1|AOX_VENIN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|9454424|gb|AAF87802.1|AF279690_1 alternative oxidase [Venturia inaequalis]
          Length = 361

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 29/222 (13%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF------------------QRRYG-------CRA 77
           H     +SDK+AL  VK LRW  D                     Q+RYG        R 
Sbjct: 101 HRDTRNWSDKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRN 160

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE+VA VPGMV GML H  S+RR +   GWI+ LLEE+ NERMHL+ F+++ +P W+ 
Sbjct: 161 VFLESVAGVPGMVAGMLRHLHSMRRMKRDHGWIETLLEESYNERMHLLIFLKLYEPGWFM 220

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R  V   QGVFFNA FL YLISP+  HR VGYLEEEA+ +YT  L +L+ G +   E + 
Sbjct: 221 RLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLA 280

Query: 195 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           AP IA DY+ LP  + T+KD++L VRADEA HR+VNH   ++
Sbjct: 281 APDIAVDYYNLPEGHRTMKDLLLHVRADEAKHREVNHTLGNL 322


>gi|390603194|gb|EIN12586.1| alternative oxidase [Punctularia strigosozonata HHB-11173 SS5]
          Length = 379

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 125/185 (67%), Gaps = 3/185 (1%)

Query: 57  TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
           TV+ LR    L    ++  RA+ LET+AAVPGMV   + H  SLR      GWI  LLEE
Sbjct: 147 TVEELRKQNYLMGPDQWLQRAIFLETIAAVPGMVAASIRHLNSLRLMRRDSGWIHTLLEE 206

Query: 117 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           AENERMHLMTFM + +P  + R LV   QGVF+N +FL YL +PK  HR VGYLEEEA+ 
Sbjct: 207 AENERMHLMTFMALRRPGLWFRTLVMGAQGVFYNVFFLSYLFAPKVCHRFVGYLEEEAVL 266

Query: 177 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +YT  +++++ G +    ++PAP+IA DYWRLP +S L DV+  +R+DE +HR VNH  +
Sbjct: 267 TYTRCIQDIEAGRLPEWADMPAPSIAIDYWRLPQDSKLLDVIYAIRSDETNHRFVNHTLA 326

Query: 234 DIHYQ 238
           +++++
Sbjct: 327 NLNHK 331


>gi|302847293|ref|XP_002955181.1| alternative oxidase [Volvox carteri f. nagariensis]
 gi|300259473|gb|EFJ43700.1| alternative oxidase [Volvox carteri f. nagariensis]
          Length = 219

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LETVA VPGMV GML H KSLR      GWI  LLEEAENERMHL+TF+E+ +P  
Sbjct: 43  RIIFLETVAGVPGMVAGMLRHLKSLRTMRRDHGWIHTLLEEAENERMHLITFLELRRPGP 102

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVP 194
             RA V   QGVFFNAYFL YL+SP+  H  +G+LEEEA+ +YT  L E+D G + +  P
Sbjct: 103 LFRAAVIGAQGVFFNAYFLAYLLSPRTCHAFIGFLEEEAVKTYTHALAEIDAGRLWKGTP 162

Query: 195 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           APAIA +YW LP  +T++D+VL VRADEA H  VNH  S +
Sbjct: 163 APAIAVEYWGLPRGATMRDLVLAVRADEACHAHVNHTFSKL 203


>gi|374619172|ref|ZP_09691706.1| alternative oxidase [gamma proteobacterium HIMB55]
 gi|374302399|gb|EHQ56583.1| alternative oxidase [gamma proteobacterium HIMB55]
          Length = 189

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 118/164 (71%), Gaps = 1/164 (0%)

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHS-GGWIKALLEEAENERMHLMTFMEV 130
           RYG RA++LETVA VPGMV GM +H KSLR+ +   G  I+ LL EAENERMHLM F+E+
Sbjct: 24  RYGHRAVVLETVAGVPGMVAGMWVHLKSLRQAKTGYGPMIRELLAEAENERMHLMFFVEI 83

Query: 131 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 190
           AKP W ERAL+   Q VF   Y + Y++SPK AH+M+ Y EEEA+ SYT +LKE++ G I
Sbjct: 84  AKPNWVERALILIAQLVFMAYYLVLYIVSPKTAHKMIHYFEEEAVRSYTSYLKEIETGKI 143

Query: 191 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
            +VPAP +A DY+ LPP++ L D++L VRADE  H D N   +D
Sbjct: 144 ADVPAPKLAIDYYDLPPDAKLSDMILKVRADEQVHADANLSFAD 187


>gi|32959910|emb|CAE11918.1| alternative oxidase [Pythium aphanidermatum]
          Length = 316

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 142/243 (58%), Gaps = 14/243 (5%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDL-KKHHAPTTFSDKMALWTVKS 60
           +++++   + +   D   E  W    P   Y+     D+ + HH P    ++ A   VK 
Sbjct: 55  LIAHFSQSSTRHPLDKAQEPVWENPVPHAVYDLQKIEDIPQTHHDPKKIHERAAYVAVKL 114

Query: 61  LR----------WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI 110
           +R           P     ++ +  R + LETVA VPGMVGGM  H +SLR      GWI
Sbjct: 115 VRKGFDIASGYRGPGGAMTEKDWLHRCLFLETVAGVPGMVGGMARHLRSLRSMRRDYGWI 174

Query: 111 KALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 170
             LLEEAENERMHL+ FM + +P    R LV   QGVFFN +F+ YL+SP+  HR VGYL
Sbjct: 175 HTLLEEAENERMHLLIFMNMKQPGPLFRLLVLGAQGVFFNMFFVSYLVSPRTCHRFVGYL 234

Query: 171 EEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 227
           EEEA+ +YT  LK+++ G++   E + APAIA  Y++LP  +++ D++  +RADEA+HRD
Sbjct: 235 EEEAVKTYTGLLKDIEDGHLKEWEKMTAPAIARSYYKLPDEASVYDMIKCIRADEANHRD 294

Query: 228 VNH 230
           VNH
Sbjct: 295 VNH 297


>gi|408397324|gb|EKJ76470.1| hypothetical protein FPSE_03380 [Fusarium pseudograminearum CS3096]
          Length = 353

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 153 IRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 212

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+    
Sbjct: 213 WFMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWS 272

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
                 P IA  YW++P  + T+KD++L +RADEA HR VNH   +++       E P P
Sbjct: 273 DPKFEIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNHTLGNLNQN-----EDPNP 327

Query: 249 L 249
            
Sbjct: 328 F 328


>gi|401881329|gb|EJT45629.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 2479]
 gi|406701771|gb|EKD04883.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 8904]
          Length = 400

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 133/197 (67%), Gaps = 7/197 (3%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           +  LR   +L   + +  R ++LE++A VPGMVGG L H +SLR     GGWI  LLEEA
Sbjct: 151 IAELRKSGELLSDKDWMTRIILLESIAGVPGMVGGTLRHLRSLRLLRRDGGWIHTLLEEA 210

Query: 118 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           ENERMHL+TF+ VA+P W+ RALV A QGVF+  +FL YL++PK AHR VG LEEEA+ +
Sbjct: 211 ENERMHLLTFLTVAQPGWFTRALVMAGQGVFYPMFFLTYLVAPKLAHRFVGALEEEAVRT 270

Query: 178 YTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           Y+  + +++KG +    + PAP IA DYWRL PN++L DV+  VRADEA HR VNH  +D
Sbjct: 271 YSHCINDVEKGFVPEWTDKPAPQIAIDYWRLKPNASLLDVIKAVRADEATHRFVNHSLAD 330

Query: 235 I----HYQGRQLRESPA 247
           +     +    L E+PA
Sbjct: 331 LDQTRDFNPFALAEAPA 347


>gi|85091906|ref|XP_959131.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28920531|gb|EAA29895.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 375

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 136/226 (60%), Gaps = 30/226 (13%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGC 75
           +  H  P TF D +A   V++ R+  DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWVAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV G L H +S+RRF+   GWIK+LLEE+ NERMHL+TF+E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGGLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 191
           + R +V   QGVF+NA F+ YL+SPK  HR VGYLEEEA+H+YT  L ELD G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLLSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKRWSD 285

Query: 192 -NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            N   P IA  YW +P  + T+KD++L VRADEA HR VNH   ++
Sbjct: 286 PNFRIPDIAVRYWNMPEGHRTMKDLILYVRADEASHRGVNHTFGNL 331


>gi|336470495|gb|EGO58656.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2508]
 gi|350291545|gb|EGZ72740.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2509]
          Length = 375

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 136/226 (60%), Gaps = 30/226 (13%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGC 75
           +  H  P TF D +A   V++ R+  DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWVAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV G L H +S+RRF+   GWIK+LLEE+ NERMHL+TF+E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGGLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 191
           + R +V   QGVF+NA F+ YL+SPK  HR VGYLEEEA+H+YT  L ELD G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLLSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKRWSD 285

Query: 192 -NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            N   P IA  YW +P  + T+KD++L VRADEA HR VNH   ++
Sbjct: 286 PNFRIPDIAVRYWNMPEGHRTMKDLILYVRADEASHRGVNHTFGNL 331


>gi|424863271|ref|ZP_18287184.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
 gi|400757892|gb|EJP72103.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
          Length = 200

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 125/186 (67%), Gaps = 1/186 (0%)

Query: 50  SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHS-GG 108
           SD  AL   K  R+  D FF +RYG RA++LETVA VPGMV G+ +H KSLR+ +   G 
Sbjct: 13  SDAFALSMTKFFRFIADTFFAKRYGHRAVVLETVAGVPGMVAGVWMHFKSLRKMKVGYGE 72

Query: 109 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 168
            I+ +L EAENERMHLM F+E+AKP ++ER +V   Q +F   Y   Y+   + AHRM+G
Sbjct: 73  QIREMLAEAENERMHLMFFIEIAKPNYFERFIVLFSQMIFGLFYLFMYVFFTRTAHRMIG 132

Query: 169 YLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228
           Y E+EA+ SYTE+L+ ++ G +EN+PAP +A  Y+ +  +S L D++  VRADE HH + 
Sbjct: 133 YFEDEAVKSYTEYLEMVESGKVENIPAPKLAISYYGIGSDSKLSDLIRCVRADEEHHSET 192

Query: 229 NHYASD 234
           NH  +D
Sbjct: 193 NHNYAD 198


>gi|83774462|dbj|BAE64585.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 310

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD+MAL TV+ LRW  DL                    + ++  R + LE+VA
Sbjct: 75  HRNAKDWSDRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVA 134

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMV  ML H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A 
Sbjct: 135 GVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAA 194

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           Q VFF  + L YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  
Sbjct: 195 QCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIK 254

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    +++ ++L VRADEA+HRDVNH   +++
Sbjct: 255 YWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|402077745|gb|EJT73094.1| alternative oxidase [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 346

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 139/240 (57%), Gaps = 25/240 (10%)

Query: 30  EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------FFQRRYGC 75
           E  E  ++  +  H  P T  DK+A   V++ RW  D                 + ++  
Sbjct: 85  EMTEKQMAEVVPGHREPKTAGDKLAWALVRTSRWFMDRASAMSSDQLKGLKPLTEAQWLT 144

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P W
Sbjct: 145 RYIFLESIAGVPGMVAGMLRHLHSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMCEPGW 204

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  +KEL+ G +     
Sbjct: 205 FLKMLILGAQGVYFNALFVAYLISPKICHRFVGYLEEEAVHTYTRSIKELEAGQLPRWSD 264

Query: 191 ENVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
                P IA  YW +P    T++D++L +RADEA+HR VNH   ++       +E P P 
Sbjct: 265 PGFKVPEIAVAYWGMPEGHRTMRDLLLYIRADEANHRGVNHTLGNL-----DQKEDPNPF 319


>gi|238492127|ref|XP_002377300.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
 gi|220695794|gb|EED52136.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
          Length = 320

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD+MAL TV+ LRW  DL                    + ++  R + LE+VA
Sbjct: 75  HRNAIDWSDRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVA 134

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMV  ML H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A 
Sbjct: 135 GVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAA 194

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           Q VFF  + L YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  
Sbjct: 195 QCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIK 254

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    +++ ++L VRADEA+HRDVNH   +++
Sbjct: 255 YWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|215983208|gb|ACJ71742.1| alternative oxidase [Paecilomyces sp. J18]
          Length = 372

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 134/218 (61%), Gaps = 22/218 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD++AL  VK LRW  D                     + ++  R + LE+VA
Sbjct: 117 HREVRNWSDRVALMMVKLLRWGMDTVTGYKHPKKGKPLPPKFEMTEEKWLNRFLFLESVA 176

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMVGGML H +SLR      GWI++LLEEA NERMHL+TFM++A+P W+ R +V   
Sbjct: 177 GVPGMVGGMLRHLRSLRLMRRDNGWIESLLEEAYNERMHLLTFMKMAEPGWFMRLMVLGA 236

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFNA+FL YL SP+  HR VGYLEEEA+H+YT  +++L+ G +   +N+ AP IA  
Sbjct: 237 QGVFFNAFFLSYLCSPRTCHRFVGYLEEEAVHTYTRAIEDLEAGKLPKWQNMEAPEIAVQ 296

Query: 202 YWR-LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
           YW  L     + D+ L +RADEA H +VNH   +++ +
Sbjct: 297 YWNMLEGKPKMLDLPLYIRADEAKHPEVNHTMGNLNQK 334


>gi|342890501|gb|EGU89319.1| hypothetical protein FOXB_00272 [Fusarium oxysporum Fo5176]
          Length = 353

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 118/167 (70%), Gaps = 6/167 (3%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+     
Sbjct: 214 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 273

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 236
                P IA  YW++P  + T+KD++L +RADEA HR VNH   +++
Sbjct: 274 PKFQIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNHTLGNLN 320


>gi|391865057|gb|EIT74348.1| alternative oxidase AlxA, putative [Aspergillus oryzae 3.042]
          Length = 320

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 22/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 84
           H     +SD+MAL TV+ LRW  DL                    + ++  R + LE+VA
Sbjct: 75  HRNAKDWSDRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVA 134

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMV  ML H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A 
Sbjct: 135 GVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAA 194

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           Q VFF  + L YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  
Sbjct: 195 QCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIK 254

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           YW++P    +++ ++L VRADEA+HRDVNH   +++
Sbjct: 255 YWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|384252235|gb|EIE25711.1| threonyl-tRNA synthetase [Coccomyxa subellipsoidea C-169]
          Length = 1049

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 14/221 (6%)

Query: 42   KHHAPTTFSDKMALWTVKSLRWPTDLFF-------QRRYGCRAMMLETVAAVPGMVGGML 94
            +H  P  +S+K   W V ++RW  D          + ++  R + LETVA VPGMVGGML
Sbjct: 830  RHKTPEKWSEKTGFWAVTAMRWSFDKITGYGPNMNEGKWLQRIVFLETVAGVPGMVGGML 889

Query: 95   LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
             H +SLR  E   GWI  LLEEAENERMHL+TF+++ +P    RA V   QGVFFN YF 
Sbjct: 890  RHMRSLRVMERDHGWIHTLLEEAENERMHLLTFLKLRQPGPLVRAGVLLTQGVFFNLYFF 949

Query: 155  GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
             Y++SPK  H  +GYLEEEA+ +YT  + ++D G +    + PAP +A  YW++  ++T+
Sbjct: 950  FYMLSPKHCHAFIGYLEEEAVKTYTHAIADIDNGKLPEWADKPAPDLAKFYWKMSEDATM 1009

Query: 212  KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 252
            +D++L VRADEA H  VNH  S++    +Q  ++P   G H
Sbjct: 1010 RDLLLNVRADEACHSHVNHTFSEL----KQSDDNPFVKGNH 1046


>gi|302921940|ref|XP_003053363.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
 gi|256734304|gb|EEU47650.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
          Length = 357

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 123/180 (68%), Gaps = 11/180 (6%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 158 RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 217

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NV 193
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+   N 
Sbjct: 218 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWND 277

Query: 194 PA---PAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
           P    P IA  YW++P  + T+KD++L +RADEA HR VNH   +++       E P P 
Sbjct: 278 PKFAIPDIAVQYWQMPKEHRTMKDLILYIRADEAVHRGVNHTLGNLNQS-----EDPNPF 332


>gi|260268365|dbj|BAI44020.1| alternative oxidase [Microdochium nivale]
          Length = 355

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 127/192 (66%), Gaps = 19/192 (9%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV GML H  SLR+ +   GWI+ LLEE+ NERMHLM FM + +P W
Sbjct: 155 RFIFLESIAGVPGMVAGMLRHLHSLRKLKRDNGWIETLLEESYNERMHLMVFMRLCEPGW 214

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 191
           + + ++   QG++FNA FL YLISPK  HR VGYLEEEA+H+YT  +++++ G++E    
Sbjct: 215 FMKTMILGAQGIYFNALFLSYLISPKITHRFVGYLEEEAVHTYTTAIEQIEAGHLEKWSS 274

Query: 192 -NVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIH-----------YQ 238
            N  AP IA  YWR+P    T++D++L +RADEA HR VNH  S+++           Y+
Sbjct: 275 PNFQAPDIAISYWRMPEGRRTMRDLLLYIRADEACHRGVNHTLSNLNADDDPNPFVSEYK 334

Query: 239 GRQLRESPAPLG 250
           G   RE+P P+ 
Sbjct: 335 GE--REAPKPIA 344


>gi|367023150|ref|XP_003660860.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
 gi|347008127|gb|AEO55615.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
          Length = 368

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 137/247 (55%), Gaps = 35/247 (14%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 68
           E +L      H  P T  D +A   V+  RW TD                          
Sbjct: 98  EEELLAVTPGHRQPKTVGDWVAWKLVRLARWATDFATGIGREQQVDMKNPTTSVTSQKPL 157

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
            + ++  R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+  +
Sbjct: 158 TEAQWLVRIIFLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLVAL 217

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
            + KP W  + ++   QGVFFNA FL YLISPK +HR VGYLEEEA+H+YT  ++E++ G
Sbjct: 218 TLGKPGWLMKTMILGAQGVFFNAMFLSYLISPKISHRFVGYLEEEAVHTYTRLIREIENG 277

Query: 189 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           ++      +   P IA  YWR+P    T++D+ L +RADEA HR VNH  S++     + 
Sbjct: 278 DLPKWSDPSFTVPDIAVTYWRMPEGKRTMRDLFLYIRADEAVHRGVNHTLSNL-----KQ 332

Query: 243 RESPAPL 249
           +E P P 
Sbjct: 333 KEDPNPF 339


>gi|395331045|gb|EJF63427.1| alternative oxidase [Dichomitus squalens LYAD-421 SS1]
          Length = 386

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/247 (43%), Positives = 141/247 (57%), Gaps = 31/247 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW-------------PTD--- 66
           W  F P  + E   S+++    A  TFSD++A   VK  RW             PT+   
Sbjct: 96  WVLFHPVYSPEELRSVEVLFRDA-KTFSDRVAHTFVKIARWAFDFASGYKHKPLPTNAAS 154

Query: 67  -----------LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 115
                      L  + ++  R + LE++AAVPGMV   L H +SLR      GWI  LLE
Sbjct: 155 MSLEELRNGGYLMDESQWLRRILFLESIAAVPGMVAAALRHLRSLRLMRRDHGWIHTLLE 214

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 175
           EAENERMHLMTFM +  P    RA+V   QGVF+NA+FL YLISP   HR VG+LEEEA+
Sbjct: 215 EAENERMHLMTFMTLKNPSRLFRAMVLGAQGVFYNAFFLCYLISPSTCHRFVGHLEEEAV 274

Query: 176 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
            +YT  ++E++ G +    N+PAP IA DYWRL P++   DVV  VR+DE+ HR VNH  
Sbjct: 275 VTYTRCIQEIEAGRLPEWTNLPAPEIAKDYWRLGPDAKFLDVVYAVRSDESTHRFVNHSL 334

Query: 233 SDIHYQG 239
           + + Y+ 
Sbjct: 335 ASLKYES 341


>gi|451852964|gb|EMD66258.1| hypothetical protein COCSADRAFT_188646 [Cochliobolus sativus
           ND90Pr]
          Length = 357

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 144/245 (58%), Gaps = 34/245 (13%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRW------------PTDL------------- 67
           E  ++  +  H    T SDK+AL  VK LRW            P D+             
Sbjct: 87  EEQMNQVIVAHREAKTMSDKVALIAVKVLRWGLDRVTGYKHPKPVDVDAKDPVAARKQFA 146

Query: 68  FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTF 127
             + +Y  R + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F
Sbjct: 147 MTEEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVF 206

Query: 128 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
           +++ +P  + R +V   QGVF NA F  YL+SP+  HR +GYLEEEA+ +YT  +K+LD+
Sbjct: 207 LKMQRPGPFMRLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIKDLDE 266

Query: 188 GNI---ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           G +   E + AP IA DYW++P  + T++D++L +RADE+ HR+VNH   ++       +
Sbjct: 267 GRLPKWEKMEAPEIAVDYWQMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQK 321

Query: 244 ESPAP 248
           E P P
Sbjct: 322 EDPNP 326


>gi|302689549|ref|XP_003034454.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
 gi|300108149|gb|EFI99551.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
          Length = 378

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 133/244 (54%), Gaps = 31/244 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC------- 75
           W  F P    E   SI +  H  PT  SDK+A   VK  RW  DL    ++         
Sbjct: 88  WLLFHPVYKPEELKSIQVI-HQVPTKLSDKVAYRLVKLARWGFDLVSGYKHKALPADAHK 146

Query: 76  --------------------RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 115
                               R + LE++A VPGMV   L H +SLR      GWI   LE
Sbjct: 147 MTVQALRKDGFVLGPDGWLNRFLFLESIAGVPGMVAATLRHLQSLRLMRRDNGWIHTCLE 206

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 175
           EAENERMHLMTFM + K   + RAL+   QGVF+N +FL Y+I P  AHR VGYLEEEA+
Sbjct: 207 EAENERMHLMTFMTLRKHSIFFRALILGAQGVFYNLFFLTYMIMPAAAHRFVGYLEEEAV 266

Query: 176 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
            +Y+  +++++   +    N PAP IA DYWRLP N+T+ DV+  VRADE  HR VNH  
Sbjct: 267 RTYSHCIQDIESNLVPEWRNAPAPQIAIDYWRLPQNATMLDVIYAVRADETSHRFVNHSL 326

Query: 233 SDIH 236
           ++++
Sbjct: 327 ANLN 330


>gi|71609886|dbj|BAE16577.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 34  ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 85
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGSLTEGKVINRCLFLETVAG 127

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGFTFRVSIIVTQ 187

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 203
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 204 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 249
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|159472945|ref|XP_001694605.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
 gi|11245480|gb|AAG33633.1|AF314254_1 alternative oxidase 1 [Chlamydomonas reinhardtii]
 gi|9027543|gb|AAC05743.2| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158276829|gb|EDP02600.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
          Length = 360

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 126/204 (61%), Gaps = 10/204 (4%)

Query: 43  HHAPTTFSDKMALWTVKSLRW---------PTDLFFQRRYGCRAMMLETVAAVPGMVGGM 93
           H  P      + L T++  R+         PT    + ++  R + LETVA  PGMV GM
Sbjct: 141 HVTPQKLHQHVGLRTIQVFRYLFDKATGYTPTGSMTEAQWLRRMIFLETVAGCPGMVAGM 200

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
           L H KSLR      GWI  LLEEAENERMHL+TF+++ +P    RA+V   QGVFFNAYF
Sbjct: 201 LRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGPAFRAMVILAQGVFFNAYF 260

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLK 212
           + YL+SP+  H  VG+LEEEA+ +YT  L E+D G + ++ PAP +A  YW L P + ++
Sbjct: 261 IAYLLSPRTCHAFVGFLEEEAVKTYTHALVEIDAGRLWKDTPAPPVAVQYWGLKPGANMR 320

Query: 213 DVVLVVRADEAHHRDVNHYASDIH 236
           D++L VRADEA H  VNH  S ++
Sbjct: 321 DLILAVRADEACHAHVNHTLSQLN 344


>gi|156392184|ref|XP_001635929.1| predicted protein [Nematostella vectensis]
 gi|156223027|gb|EDO43866.1| predicted protein [Nematostella vectensis]
          Length = 175

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
           MLETVA VPGM+G M  H  SLRR     GWI  LLEEAENERMHLMT +E+ +P    R
Sbjct: 1   MLETVAGVPGMIGAMTRHFNSLRRLTRDHGWIHTLLEEAENERMHLMTALELKRPGILFR 60

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 195
            ++ A QGVF N +F+ YL SP+F HR VGYLEEEA+ +YT  L+ +D G +     + A
Sbjct: 61  GVILAAQGVFVNMFFIAYLTSPRFCHRFVGYLEEEAVKTYTYCLECIDNGKLPTWNTLKA 120

Query: 196 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 236
           P IA++YW+L  ++ ++DV+L +RADEAHHR VNH  S IH
Sbjct: 121 PKIASNYWKLKEDAVMRDVILAIRADEAHHRVVNHTLSSIH 161


>gi|412992248|emb|CCO19961.1| alternative oxidase [Bathycoccus prasinos]
          Length = 408

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 112/165 (67%), Gaps = 5/165 (3%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LETVA +PGMV GML H  SLR   H  GWI  LLEEAENERMHLMTF+ + +P  
Sbjct: 203 RFIFLETVAGIPGMVAGMLRHMNSLRLLRHDNGWIHTLLEEAENERMHLMTFLNMKQPSI 262

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 191
           + RA V A QGVFFNA+F  YLISP+  HR VGYLEEEA+ +YT  L ++D G  +    
Sbjct: 263 FFRAGVLAAQGVFFNAFFFSYLISPRTCHRFVGYLEEEAVRTYTHALNDIDSGGTDARQW 322

Query: 192 -NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
               AP +A +YW++  ++T++DV+L VRADEA H  VNH  S +
Sbjct: 323 AKERAPKLAIEYWKMDEDATIRDVLLAVRADEASHAHVNHTFSSM 367


>gi|62548351|gb|AAX86821.1| putative alternative oxidase [Actinidia deliciosa]
          Length = 107

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 96/107 (89%)

Query: 88  GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 147
           GMVGGMLLH +SLR+FEHSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV  VQGV
Sbjct: 1   GMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVELVKPKWYERILVLTVQGV 60

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 194
           FFNA+F  YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G IENVP
Sbjct: 61  FFNAFFALYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVP 107


>gi|74272617|gb|ABA01104.1| mitochondrial alternative oxidase [Chlamydomonas incerta]
          Length = 260

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 10/204 (4%)

Query: 43  HHAPTTFSDKMALWTVKSLRW---------PTDLFFQRRYGCRAMMLETVAAVPGMVGGM 93
           H +P      + L T++  R+         P     + ++  R + LETVA  PGMV GM
Sbjct: 41  HVSPQKLHQHVGLRTIQVFRYLFDKATGYTPAGTMTEAQWLRRMIFLETVAGCPGMVAGM 100

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
           L H KSLR      GWI  LLEEAENERMHL+TF+++ +P    RA+V   QGVFFNAYF
Sbjct: 101 LRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGPAFRAMVIVAQGVFFNAYF 160

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLK 212
           L YL+SP+  H  VG+LEEEA+ +YT  L+E+D G + ++ PAP +A  YW L   +T++
Sbjct: 161 LAYLLSPRTCHAFVGFLEEEAVKTYTHALEEIDAGRLWKDTPAPPVAVQYWGLKQGATMR 220

Query: 213 DVVLVVRADEAHHRDVNHYASDIH 236
           D++L VRADEA H  VNH  S ++
Sbjct: 221 DLILAVRADEACHAHVNHTLSQLN 244


>gi|85106053|ref|XP_962086.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28923681|gb|EAA32850.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 362

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 141/247 (57%), Gaps = 35/247 (14%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 68
           E +++  + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPL 150

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           ++ +P    + L+   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 189 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNLDQ----- 325

Query: 243 RESPAPL 249
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|3023302|sp|Q01355.1|AOX_NEUCR RecName: Full=Alternative oxidase, mitochondrial; Short=ALTOX;
           Flags: Precursor
 gi|1161144|gb|AAC37481.1| alternative oxidase [Neurospora crassa]
 gi|24061748|gb|AAN39882.1| alternative oxidase [Neurospora crassa]
          Length = 362

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 141/247 (57%), Gaps = 35/247 (14%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 68
           E +++  + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPL 150

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           ++ +P    + L+   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 189 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL-----DQ 325

Query: 243 RESPAPL 249
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|380488128|emb|CCF37588.1| alternative oxidase [Colletotrichum higginsianum]
          Length = 235

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMV GML H  SLRR +   GWI++LLEE+ NERMHL+TFM++++P 
Sbjct: 35  VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPG 94

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFN  FL YLI+PK  HR VGYLEEEA+H+YT  L E+D G +    
Sbjct: 95  WFMKLMILGAQGVFFNGMFLSYLIAPKITHRFVGYLEEEAVHTYTRCLYEIDLGLLPKWS 154

Query: 191 -ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
             N   P IA  YWR+P    T+KD+++ +RADEA HR VNH   +++      +E P P
Sbjct: 155 DPNFTIPDIAVQYWRIPEGKRTMKDLIMYIRADEAVHRGVNHTLGNLNQ-----KEDPNP 209

Query: 249 L 249
            
Sbjct: 210 F 210


>gi|346978317|gb|EGY21769.1| alternative oxidase [Verticillium dahliae VdLs.17]
          Length = 354

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 36/253 (14%)

Query: 28  PWEAY-EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 67
           P E Y EAD+   +  H  P T+ D  A   V+  RW  D                    
Sbjct: 82  PHEGYSEADMLAVVPGHRVPETWGDWAAWKFVRVARWTMDRATGLKPEQQVDKKNPTTAV 141

Query: 68  -----FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 122
                  + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERM
Sbjct: 142 VANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESYNERM 201

Query: 123 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 182
           HL+TFM++++P W+ + ++   QGVFFN  FL YL+SPK  HR VGYLEEEA+H+Y+  +
Sbjct: 202 HLLTFMKMSEPGWFMKVMLIGAQGVFFNGMFLSYLVSPKITHRFVGYLEEEAVHTYSRCI 261

Query: 183 KELDKGNI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           +E+++G +      N   P +A  YW +P    T++D++L +RADEA HR VNH  S+++
Sbjct: 262 REIEEGQLPKWSDPNFNIPDLAVQYWNIPEGKRTMRDLILYIRADEAVHRGVNHTLSNLN 321

Query: 237 YQGRQLRESPAPL 249
                  E P P 
Sbjct: 322 QN-----EDPNPF 329


>gi|66359376|ref|XP_626866.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
 gi|35375829|gb|AAQ84544.1| alternative oxidase [Cryptosporidium parvum]
 gi|46228123|gb|EAK89022.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
          Length = 335

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 130/209 (62%), Gaps = 10/209 (4%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 93
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGVFFNAY 152
           L H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  F   Y
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNST 210
            + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ LP ++T
Sbjct: 246 TVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGLPEDAT 305

Query: 211 LKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           ++D+ L +R DE+HHRDVNH  +DI   G
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNG 334


>gi|345565383|gb|EGX48333.1| hypothetical protein AOL_s00080g303 [Arthrobotrys oligospora ATCC
           24927]
          Length = 360

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 30/233 (12%)

Query: 30  EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL---------------------- 67
           E   AD+ I    H     FSD++A+  V+ LR   D+                      
Sbjct: 90  EKQMADIEI---AHRKARNFSDRIAINAVRFLRGMFDIATGYKHDPKIASGEKSPKEETQ 146

Query: 68  --FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
               ++++  R + LE++A VPG V G L H KS+R      GWI+ LLEE  NERMHL+
Sbjct: 147 FAMTEKKWMVRFIFLESIAGVPGFVAGTLRHLKSIRSLRRDNGWIETLLEEGYNERMHLL 206

Query: 126 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 185
           TF+++ +P  + R ++   QGVF+NA+FL YL+SP+  HR VGYLEEEA+ +YT  + ++
Sbjct: 207 TFLKLHQPGLFMRLMIIGAQGVFYNAFFLSYLLSPRTCHRFVGYLEEEAVITYTRAISDI 266

Query: 186 DKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           D G +   EN+ AP IA DYW++ P ++++D++L +RADEA HR+VNH  +++
Sbjct: 267 DAGKLPGFENMKAPQIAVDYWKMNPGASIRDMLLYIRADEAKHREVNHTLANL 319


>gi|336269921|ref|XP_003349720.1| alternative oxidase [Sordaria macrospora k-hell]
          Length = 337

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 12/223 (5%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 92
           E +++  + +H  P T  D +A   V+  R    L  + ++  R + LE++A VPGMV G
Sbjct: 91  EKEMTSVVPEHRKPETVGDWLAWKLVRICRADKPLT-EAQWLVRFIFLESIAGVPGMVAG 149

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P    + L+   QGVFFNA 
Sbjct: 150 MLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAM 209

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATDYWRLPP 207
           FL YLISPK  HR VGYLEEEA+H+YT  + E+++G++     E    P +A  YWR+P 
Sbjct: 210 FLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKWRDERFQIPEMAVRYWRMPE 269

Query: 208 NS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
              T+KD++  VRADEA HR VNH  S++       +E P P 
Sbjct: 270 GKRTMKDLIYYVRADEAVHRGVNHTLSNLDQ-----KEDPNPF 307


>gi|299132133|ref|ZP_07025328.1| Alternative oxidase [Afipia sp. 1NLS2]
 gi|298592270|gb|EFI52470.1| Alternative oxidase [Afipia sp. 1NLS2]
          Length = 220

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 36  LSID---LKKHHAPTTFSDKMALWTVKSLRW-PTDLFFQRRYGCRAMMLETVAAVPGMVG 91
           L+ID   L +HH P    D++A    + + W   + FF  RYG + ++LETV AVP MV 
Sbjct: 2   LNIDKTNLLRHHTPERIPDRIAFGLARLVAWMAGNTFFNSRYGDQVIVLETVTAVPPMVV 61

Query: 92  GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 151
             LLH K LRR    GGW++  ++EAE++R HLM F+ +AKP  +ER L+  VQG+F+NA
Sbjct: 62  ATLLHLKCLRRMLDDGGWVRTFMDEAESQRTHLMAFVALAKPNAWERFLIVLVQGIFYNA 121

Query: 152 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 211
           YF  YLIS   AHR+  Y  E+A+  Y+++L +++ G     PAPA+A  YW L P++ +
Sbjct: 122 YFFLYLISAGTAHRLAAYFAEQAVQGYSKYLSQIESGERAMQPAPALAIAYWALAPDAQV 181

Query: 212 KDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +D++  +  DEA HRD++H  +D   QG+
Sbjct: 182 RDMIASMLEDEAIHRDLHHAFADALMQGQ 210


>gi|40313538|dbj|BAD06177.1| alternative oxidase [Cryptosporidium parvum]
          Length = 335

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 130/209 (62%), Gaps = 10/209 (4%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 93
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGVFFNAY 152
           L H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  F   Y
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNST 210
            + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ LP ++T
Sbjct: 246 TVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGLPEDAT 305

Query: 211 LKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           ++D+ L +R DE+HHRDVNH  +DI   G
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNG 334


>gi|336470634|gb|EGO58795.1| mitochondrial Alternative oxidase [Neurospora tetrasperma FGSC
           2508]
 gi|350291699|gb|EGZ72894.1| mitochondrial alternative oxidase [Neurospora tetrasperma FGSC
           2509]
          Length = 362

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 141/247 (57%), Gaps = 35/247 (14%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 68
           E +++  + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPL 150

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           ++ +P    + L+   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 189 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWRDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL-----DQ 325

Query: 243 RESPAPL 249
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|71609884|dbj|BAE16576.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 34  ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 85
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKVINRCLFLETVAG 127

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 203
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 204 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 249
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|342184354|emb|CCC93836.1| putative alternative oxidase [Trypanosoma congolense IL3000]
          Length = 323

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 34  ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 85
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKVINRCLFLETVAG 127

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 203
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 204 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 249
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|340373435|ref|XP_003385247.1| PREDICTED: alternative oxidase, mitochondrial-like [Amphimedon
           queenslandica]
          Length = 308

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 136/218 (62%), Gaps = 15/218 (6%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF------------QRRYGCRAMML 80
           E++L+     H  P+ F DK A  +V++LR+  D+F             ++++  R + L
Sbjct: 79  ESELNEVTITHVKPSLFVDKAAYASVQTLRFFFDVFSGYYIGKFRGTLNEKKWLTRIIFL 138

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ETVA VPGM+  ML H +SLR  +   GWI  LLEEAENERMHL+T + + KP +  R  
Sbjct: 139 ETVAGVPGMIAAMLRHLRSLRYLQRDHGWIHTLLEEAENERMHLLTALVLRKPGFLFRFA 198

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPA 197
           V   QG+F   +   Y+ISPKF HR VGYLEEEA+ +YT  L+ +D+G+++      AP+
Sbjct: 199 VIGAQGIFVTLFSAAYIISPKFCHRFVGYLEEEAVKTYTHCLECIDRGDLKVWAKTAAPS 258

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           I+  YW+LP  + ++DV+L +RADEAHH +VNH  S +
Sbjct: 259 ISQKYWQLPEGAMMRDVILAIRADEAHHCEVNHTLSSM 296


>gi|71609882|dbj|BAE16575.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 34  ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 85
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKMINRCLFLETVAG 127

Query: 86  VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 145
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 146 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 203
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 204 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 249
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|320169629|gb|EFW46528.1| alternative oxidase isoform B [Capsaspora owczarzaki ATCC 30864]
          Length = 379

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 133/219 (60%), Gaps = 15/219 (6%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMVGGML 94
           HH P    D  A   +K +R   D+     +G         R + LETVAAVPGMVG M+
Sbjct: 162 HHKPDNLVDWTAFAAIKCIRLGFDVLSGFAFGERTPDKWLTRIIFLETVAAVPGMVGAMI 221

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H +SLR      GWI  LLEEAENERMHL+T +++ +P    R  V AVQGV  N +F 
Sbjct: 222 RHLQSLRLMRRDHGWIHTLLEEAENERMHLLTALQLKQPSQLFRLAVLAVQGVMTNTFFF 281

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
            Y+++P+F HR VGYLEEEA+++YT+ L ++  G +   +   AP IA +YW+L   +T+
Sbjct: 282 LYILAPRFVHRFVGYLEEEAVYTYTKCLDDIKTGKLPEWKTGKAPEIAINYWKLDKAATM 341

Query: 212 KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 250
           +DV+  +R+DEAHHR VNH  +++H    QL +S  P G
Sbjct: 342 EDVIYAIRSDEAHHRLVNHTFANLH----QLGQSRNPYG 376


>gi|67595330|ref|XP_665993.1| alternative oxidase [Cryptosporidium hominis TU502]
 gi|35375840|gb|AAQ84545.1| alternative oxidase [Cryptosporidium parvum]
 gi|54656887|gb|EAL35765.1| alternative oxidase [Cryptosporidium hominis]
          Length = 335

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 129/209 (61%), Gaps = 10/209 (4%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 93
           K H  P  F DKM+ + V +LR   DL  +   G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYNKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGVFFNAY 152
           L H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  F   Y
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNST 210
            + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ LP ++T
Sbjct: 246 TIFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFEKKAPKFASVYYGLPEDAT 305

Query: 211 LKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           ++D+ L +R DE+HHRDVNH  +DI   G
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNG 334


>gi|336260284|ref|XP_003344938.1| hypothetical protein SMAC_08419 [Sordaria macrospora k-hell]
 gi|380087699|emb|CCC14107.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 375

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 134/226 (59%), Gaps = 30/226 (13%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGC 75
           +  H  P TF D +A   V++ R+  DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWIAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV G L H +S+RRF+   GWIK+LLEE+ NERMHL+TF+E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGSLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 191
           + R +V   QGVF+NA F+ YL SPK  HR VGYLEEEA+H+YT  L ELD G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLFSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKKWSD 285

Query: 192 -NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
                P +A  YW +P  + T+KD++L VRADEA HR VNH   ++
Sbjct: 286 PKFRIPDLAVRYWNMPEGHRTMKDLILYVRADEASHRGVNHTFGNL 331


>gi|403416825|emb|CCM03525.1| predicted protein [Fibroporia radiculosa]
          Length = 341

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 138/243 (56%), Gaps = 31/243 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------- 67
           W  F P    E   S+D+  H    + SDK+A   V+ LRW  DL               
Sbjct: 55  WVLFHPVYTQEELKSVDVL-HREAKSVSDKIAWTFVRLLRWGFDLASGYRHKPLPPNYKN 113

Query: 68  ------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 115
                         ++++  R + LE++A VPGMV   L H KSLR  +   GWI  LLE
Sbjct: 114 MSLEALRKGGYIMNEKQWLRRILFLESIAGVPGMVAATLRHLKSLRVMKRDSGWIHTLLE 173

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 175
           EAENERMHLMTFM + KP    RA+V   QGVF+NA+F  YL+SP+  HR VG+LEEEA+
Sbjct: 174 EAENERMHLMTFMVLRKPGIIFRAMVIGAQGVFYNAFFFCYLLSPRTCHRFVGHLEEEAV 233

Query: 176 HSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
            +Y+  + E++ G + N   +PAP IA DYWRL  N+ L DV+  VR+DE+ HR VNH  
Sbjct: 234 LTYSRCIDEVEAGRLPNWSELPAPEIAKDYWRLESNAKLLDVLYAVRSDESTHRFVNHSL 293

Query: 233 SDI 235
           +++
Sbjct: 294 ANL 296


>gi|212528930|ref|XP_002144622.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
 gi|210074020|gb|EEA28107.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
          Length = 357

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 124/183 (67%), Gaps = 9/183 (4%)

Query: 70  QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           +R++  R + LE+VA VPGMV GML H +SLR      GWI+ LLEEA NERMHL+TFM+
Sbjct: 149 ERKWLNRILFLESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMK 208

Query: 130 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 189
           +A+P  + R +V   QGV+FN  F  YL+SP+  HR VGYLEEEA+ +YT  ++EL  GN
Sbjct: 209 IAEPGLFMRVMVLGAQGVYFNGLFFAYLVSPRTCHRFVGYLEEEAVLTYTRIIQELQAGN 268

Query: 190 I---ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 245
           +   +N+ AP IA +YW++P  +  + D++L VRADEA HR+VNH   +++      +E 
Sbjct: 269 LPEWQNMEAPEIAINYWKMPEGHRKMLDLMLYVRADEAKHREVNHTLGNLNQ-----KED 323

Query: 246 PAP 248
           P P
Sbjct: 324 PNP 326


>gi|429847992|gb|ELA23528.1| alternative oxidase [Colletotrichum gloeosporioides Nara gc5]
          Length = 356

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 122/181 (67%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++++P 
Sbjct: 156 VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESFNERMHLLTFMKMSEPG 215

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFN+ FL YL+SPK  HR VGYLEEEA+H+YT  + E+D+G +    
Sbjct: 216 WFMKTMILGAQGVFFNSMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIHEIDQGLLPKWS 275

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
                 P IA  YW++P  + T+KD+++ +RADEA HR VNH  S+++      +E P P
Sbjct: 276 DPKFEIPDIAVQYWKIPEGHRTMKDLIMYIRADEAVHRGVNHTLSNLNQ-----KEDPNP 330

Query: 249 L 249
            
Sbjct: 331 F 331


>gi|51701284|sp|Q8J1Z2.1|AOX_GELSS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|24061746|gb|AAN39884.1| alternative oxidase [Gelasinospora sp. S23]
          Length = 362

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 140/247 (56%), Gaps = 35/247 (14%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 68
           E ++   + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMISVVPEHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQVDKNHPTTATSADKPL 150

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           ++ +P    + L+   QGVFFNA FL YL+SPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 189 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWSDERFEIPEMAVRYWRMPEGKRTMKDLIYYIRADEAVHRGVNHTLSNLDQ----- 325

Query: 243 RESPAPL 249
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|443727462|gb|ELU14203.1| hypothetical protein CAPTEDRAFT_151460 [Capitella teleta]
          Length = 233

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 121/199 (60%), Gaps = 11/199 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 94
           H  P  F D  A   VK+ R   D           +RR+  R   LETVAAVPGMV  M+
Sbjct: 18  HKKPEGFIDNFAFIGVKTTRTFFDAVSGFNRGERNERRWLTRLCFLETVAAVPGMVAAMV 77

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  S+R+     GWI  LLEEAENERMHLMTF+ + +P W  R +V   QGVF   +  
Sbjct: 78  RHLNSIRKMSRDHGWIHTLLEEAENERMHLMTFLLLKQPSWAFRMVVVITQGVFVTGFSC 137

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTL 211
            Y++SPK  HR VGYLEEEA+ +YT+ LKE++ GN++     PA  +A  YW L  ++ +
Sbjct: 138 AYMLSPKLCHRFVGYLEEEAVVTYTKLLKEIETGNMQHWLTQPASQVAIHYWNLAEDAKM 197

Query: 212 KDVVLVVRADEAHHRDVNH 230
           +DV+L +RADEAHHR VNH
Sbjct: 198 RDVILAIRADEAHHRVVNH 216


>gi|332099427|gb|ABN09948.3| mitochondrial alternative oxidase [Moniliophthora perniciosa]
 gi|342349569|gb|AEL23664.1| mitochondrial alternative oxidase [Moniliophthora perniciosa]
          Length = 378

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 30/243 (12%)

Query: 23  WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ------------ 70
           W  F P  + E +L +    H   T  SD++A   V   RW  D   +            
Sbjct: 82  WVLFHPVYSPE-ELKVVEVLHREATCLSDRVAAGLVGLCRWGYDFVTRYKHKTIPPGKNM 140

Query: 71  -----RRYG---------CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
                R+ G          R + LE++A VPGMV   + H  SLR      GWI   LEE
Sbjct: 141 TLAELRKEGYLLDDKAWLSRILFLESIAGVPGMVAATIRHLTSLRLMRRDNGWIHTCLEE 200

Query: 117 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           AENERMHLMTFM + KP  + RA++   QGVF+N +FL Y+ISP+  HR VGYLEEEA+ 
Sbjct: 201 AENERMHLMTFMTLRKPSIFFRAMILGAQGVFYNLFFLSYIISPRICHRFVGYLEEEAVL 260

Query: 177 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +YT+ +K+++ G +    ++PAP IA DYWRLP ++ L DV+  VR+DE  HR VNH  +
Sbjct: 261 TYTKCIKDIEAGYVPEWSDMPAPKIAIDYWRLPADAKLLDVIYAVRSDETTHRFVNHSLA 320

Query: 234 DIH 236
           +++
Sbjct: 321 NLN 323


>gi|14348862|gb|AAK61349.1|AF363785_1 alternative oxidase [Venturia inaequalis]
          Length = 358

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/222 (45%), Positives = 132/222 (59%), Gaps = 29/222 (13%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF------------------QRRYG-------CRA 77
           H     +SDK+AL  VK LRW  D                     Q+RYG        R 
Sbjct: 98  HRDTRNWSDKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRN 157

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + L +VA VPGMV GML H  S+RR +   GW + LLEE+ NERMHL+ F+++ +P W+ 
Sbjct: 158 VFLXSVAGVPGMVAGMLRHLHSMRRMKRDHGWXETLLEESYNERMHLLIFLKLYEPGWFM 217

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R  V   QGVFFNA FL YLISP+  HR VGYLEEEA+ +YT  L +L+ G +   E + 
Sbjct: 218 RLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLA 277

Query: 195 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           AP IA DY+ LP  + T+KD++L VRADEA HR+VNH   ++
Sbjct: 278 APDIAVDYYNLPEGHRTMKDLLLHVRADEAKHREVNHTLGNL 319


>gi|388516585|gb|AFK46354.1| unknown [Medicago truncatula]
          Length = 131

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 111/131 (84%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMT +E+ KP W+ER LV   QGVFFN +F+ Y++SPK AHR VGYLEEEA+ SYT++
Sbjct: 1   MHLMTMVELVKPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQY 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHR VNH+ASDIH+QG++
Sbjct: 61  LNAIESGKVENVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRGVNHFASDIHHQGKE 120

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 121 LKEAPAPVGYH 131


>gi|449300077|gb|EMC96090.1| hypothetical protein BAUCODRAFT_148923 [Baudoinia compniacensis
           UAMH 10762]
          Length = 457

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 120/170 (70%), Gaps = 4/170 (2%)

Query: 70  QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           +R++  R + LE+VA VPGMV GML H  S+RR +   GWI+ LLEE+ NERMHL+TFM+
Sbjct: 246 ERQWMIRFIFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFMK 305

Query: 130 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 189
           +A+P W+ R +V   QGVFFN  FL YL+SPK  HR VGYLEEEA+++Y+  L ++D G 
Sbjct: 306 MAEPGWFLRLMVLGAQGVFFNGMFLFYLVSPKTCHRFVGYLEEEAVYTYSRVLSDIDAGK 365

Query: 190 I---ENVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDI 235
           +     + AP IA  YW +P +  +++D++L +RADE+ HR+VNH   ++
Sbjct: 366 LPMFSQMQAPDIAVKYWNMPEDHRSMRDLILYIRADESKHREVNHTLGNL 415


>gi|342890541|gb|EGU89342.1| hypothetical protein FOXB_00140 [Fusarium oxysporum Fo5176]
          Length = 341

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 115/166 (69%), Gaps = 6/166 (3%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 142 RFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 201

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + + ++   QGVFFN  F+ YL+SPK  HR VGYLEEEA+H+YT  +KE++ G++     
Sbjct: 202 FMKVMIIGAQGVFFNGLFICYLLSPKIVHRFVGYLEEEAVHTYTRCIKEIEDGHLPKWSD 261

Query: 191 ENVPAPAIATDYWRLP-PNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            N   P IA  YW +P    T+KD++L +RADEA HR VNH   ++
Sbjct: 262 PNFRIPDIAIQYWNIPEERQTMKDLILYIRADEAVHRGVNHTLGNL 307


>gi|389744708|gb|EIM85890.1| alternative oxidase [Stereum hirsutum FP-91666 SS1]
          Length = 331

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV     H KSLR      GWI  LLEEAENERMHLMTFM +  P W
Sbjct: 120 RILFLESIAGVPGMVAATCRHLKSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLRNPGW 179

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
           + R L+   QGVF+N +F  YLISP+  HR VGYLEEEA+ +Y+  ++E++ G +    N
Sbjct: 180 FFRMLILGAQGVFYNMFFFSYLISPRVCHRFVGYLEEEAVITYSRCIQEMEAGRLPLWSN 239

Query: 193 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            PAP IA DYWRL P++T+ DV+  VR+DE  HR VNH  +++
Sbjct: 240 KPAPEIAKDYWRLRPDATMLDVIYAVRSDETSHRFVNHSLANL 282


>gi|353244382|emb|CCA75783.1| related to alternative oxidase precursor, mitochondrial
           [Piriformospora indica DSM 11827]
          Length = 449

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 135/248 (54%), Gaps = 30/248 (12%)

Query: 17  DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ------ 70
            G    W  F P  +     ++ + +H  P    D+ A W V++LR   D          
Sbjct: 153 SGDRGDWVLFHPVYSQSELKAVQVLRHQ-PENMRDRTASWFVRALRKGYDFVSGYHHKPI 211

Query: 71  -----------RRYG---------CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI 110
                      R+ G          R + LET+A VPG    M+ H + LR  +  GGWI
Sbjct: 212 PPGSTMSIEELRKGGYILSADQWLNRILFLETIAGVPGFFAAMIRHLRGLRGMKRDGGWI 271

Query: 111 KALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 170
             LLEEAENERMHLMTFM + +   + RA + A QGVF NA+FL YL+SP+  HR VG L
Sbjct: 272 HTLLEEAENERMHLMTFMTLRQSGIFFRAFIVAAQGVFANAFFLAYLVSPRTCHRFVGSL 331

Query: 171 EEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 227
           EEEA  +YT  +++++ G +   ++ PAP IA DYWRL PN+TL DV+  VR+DE  HR 
Sbjct: 332 EEEATLTYTALIEDMEAGRVPEWKDKPAPGIAIDYWRLKPNATLLDVIYAVRSDETTHRF 391

Query: 228 VNHYASDI 235
           VNH  +++
Sbjct: 392 VNHTLANL 399


>gi|159490736|ref|XP_001703329.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|9930474|gb|AAG02081.1|AF285187_1 alternative oxidase [Chlamydomonas reinhardtii]
 gi|11245482|gb|AAG33634.1|AF314255_1 alternative oxidase 2 [Chlamydomonas reinhardtii]
 gi|158280253|gb|EDP06011.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 347

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/243 (41%), Positives = 142/243 (58%), Gaps = 14/243 (5%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHH-APTTFSDKMALWTVKS 60
           +  + G++AP    DD  E    C+RP   Y+      +K  H  P     ++    + +
Sbjct: 94  VAPHPGMKAPSPPTDDEVE---ACWRP--VYDTAYLEKVKPFHITPERLYQRIGFRAIMA 148

Query: 61  LRWPTDLFF-------QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 113
            RW  D          + ++  R + LET+A VPGMV G+L H KSLR  +   GWI  L
Sbjct: 149 ARWTFDKLTGYGPNMTEAKWLQRMIFLETIAGVPGMVAGVLRHLKSLRSMKRDHGWIHTL 208

Query: 114 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 173
           L+EAENERMHL+TF E+ KP    RA +   QGVF+N YF+GYL+SP+  H  VG+LEEE
Sbjct: 209 LQEAENERMHLLTFFELRKPGPLFRASIIVAQGVFWNLYFIGYLVSPRTCHAAVGFLEEE 268

Query: 174 AIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
           A+ +YT  L+E+D G + +   AP IA +YW L P ++++D++L VRADEA H  VNH  
Sbjct: 269 AVKTYTHALQEIDAGRLWKGKVAPPIACEYWGLKPGASMRDLILAVRADEACHAHVNHTL 328

Query: 233 SDI 235
           S +
Sbjct: 329 SGL 331


>gi|400596179|gb|EJP63955.1| alternative oxidase [Beauveria bassiana ARSEF 2860]
          Length = 593

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 145/252 (57%), Gaps = 36/252 (14%)

Query: 28  PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW------------------PTDL-- 67
           P  +YE +++  +  H  P TF D +A  TV+  R+                  PT    
Sbjct: 322 PGYSYE-EMTAVVPAHRKPRTFGDWLAWKTVRFARYWMDKATGMDRQQQVDKSHPTTAVE 380

Query: 68  ----FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
                 + ++  R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMH
Sbjct: 381 AEKPLTEAQWLIRFVFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMH 440

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           L+TFM++ +P W+ + ++   QGVFFN  FL YL +PK  HR VGYLEEEA+H+YT  +K
Sbjct: 441 LLTFMKMCEPGWFMKLMIIGAQGVFFNGMFLMYLANPKIVHRFVGYLEEEAVHTYTRSIK 500

Query: 184 ELDKGNI-----ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHY 237
           E++ G++          P IA  YWR+P  + T+KD++L +RADEA HR VNH   +++ 
Sbjct: 501 EIEDGHLPRWADPKFRIPDIAIQYWRMPEGHQTMKDLLLYIRADEAGHRGVNHTFGNLNQ 560

Query: 238 QGRQLRESPAPL 249
                +E P P 
Sbjct: 561 -----KEDPNPF 567


>gi|71747778|ref|XP_822944.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|51338731|sp|Q26710.2|AOX_TRYBB RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|17129642|dbj|BAB72245.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|17129644|dbj|BAB72256.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|45825838|gb|AAB46424.2| alternative oxidase [Trypanosoma brucei brucei]
 gi|62701577|dbj|BAD95615.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|70832612|gb|EAN78116.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|71609888|dbj|BAE16578.1| alternative oxidase [Trypanosoma evansi]
 gi|108743274|dbj|BAE95411.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|108743276|dbj|BAE95412.1| alternative oxidase [Trypanosoma brucei rhodesiense]
 gi|261332779|emb|CBH15774.1| alternative oxidase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 329

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 125/214 (58%), Gaps = 10/214 (4%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 94
           H  P    D +A  +V++ RW  D F   R+G         R + LETVA VPGMVGGML
Sbjct: 77  HKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSITESKVISRCLFLETVAGVPGMVGGML 136

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLR      GWI  LL EAENERMHLMTF+E+ +P    R  +   Q + +    +
Sbjct: 137 RHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGLPLRVSIIITQAIMYLFLLV 196

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP--APAIATDYWRLPPNSTLK 212
            Y+ISP+F HR VGYLEEEA+ +YT  ++ +D+G +       P +A  YW L  N+T +
Sbjct: 197 AYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEGRLRPTKNDVPEVARVYWNLSKNATFR 256

Query: 213 DVVLVVRADEAHHRDVNHYASDIHYQGRQLRESP 246
           D++ V+RADEA HR VNH  +D+H +  Q   +P
Sbjct: 257 DLINVIRADEAEHRVVNHTFADMHEKRLQNSVNP 290


>gi|310793332|gb|EFQ28793.1| alternative oxidase [Glomerella graminicola M1.001]
          Length = 355

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMV GML H  SLRR     GWI+ LLEE+ NERMHL+TFM++++P 
Sbjct: 155 VRFIFLESIAGVPGMVAGMLRHLGSLRRMRRDNGWIETLLEESFNERMHLLTFMKMSEPG 214

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFN  FL YL++PK  HR VGYLEEEA+H+YT  L E+D+G +    
Sbjct: 215 WFMKVMILGAQGVFFNGMFLSYLVAPKVTHRFVGYLEEEAVHTYTRCLYEIDQGLLPKWS 274

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
             N   P IA  YW++P  + T+KD++L +RADEA HR VNH   +++      +E P P
Sbjct: 275 DPNFVIPDIAVQYWKIPEGHRTMKDLILYIRADEAVHRGVNHTLGNLNQ-----KEDPNP 329

Query: 249 L 249
            
Sbjct: 330 F 330


>gi|189211215|ref|XP_001941938.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187978031|gb|EDU44657.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 352

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 136/235 (57%), Gaps = 34/235 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTD-------------------------LFFQRRYGCRA 77
           H    T SDK+AL  VK LRW  D                            + +Y  R 
Sbjct: 92  HREAKTMSDKVALLAVKVLRWGLDKATGYKHHKALDVDAKDPVAARRKFAMNEEKYLIRN 151

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 152 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQQPGRFM 211

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R +V   QGVF NA F  YL+SP+  HR +GYLEEEA+ +YT  +++LD G +   E + 
Sbjct: 212 RLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIEDLDAGRLPKWEKMQ 271

Query: 195 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
           AP IA DYW +P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 272 APEIAIDYWNMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 321


>gi|325610915|gb|ADZ36698.1| alternative oxidase [Urechis unicinctus]
          Length = 348

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMVGGML 94
           H  P    DK+A   VK  R   D       G         R   LETVA VPGMV  M+
Sbjct: 133 HRNPEGIVDKIAYMGVKFTRGCYDFVSGYSRGRQDEKMWVSRLCFLETVAGVPGMVAAMV 192

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLR+     GWI  LLEEAENERMHLM  +++ +P  + R  V   QGVF + + +
Sbjct: 193 RHLTSLRKMRRDHGWIHTLLEEAENERMHLMVMLQLKQPSLFFRLGVMVTQGVFVSGFSV 252

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTL 211
            Y++SP+  HR VGYLEEEA+ +YT+ LKE+D G ++    +P P +A  YW+L P + +
Sbjct: 253 AYMLSPRLCHRFVGYLEEEAVITYTKLLKEIDSGAMQHWNTLPGPDVAISYWKLRPGAAM 312

Query: 212 KDVVLVVRADEAHHRDVNHYASDI 235
           KDV+L +RADEAHHR VNH  S +
Sbjct: 313 KDVILAIRADEAHHRVVNHTLSSL 336


>gi|443722305|gb|ELU11227.1| hypothetical protein CAPTEDRAFT_227551 [Capitella teleta]
          Length = 337

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 131/220 (59%), Gaps = 17/220 (7%)

Query: 30  EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRR-------YGCRAMML 80
           E Y+ +++     H  P  F D  A   V++ R   D    + R        +  R   L
Sbjct: 113 EVYDVNIT-----HKKPVGFIDNFAYLGVQTTRKVFDFLTGYNRTPSPSNAVWVNRLCFL 167

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ETVA VPGMV  M+ H +SLRR     GWI  LLEEAENERMHLM F+++ +P    R  
Sbjct: 168 ETVAGVPGMVAAMVRHLESLRRMRRDHGWIHTLLEEAENERMHLMVFLQIKQPSLLFRLS 227

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAPA 197
           V + Q +F + + + YL+SPK  HR VGYLEEEA+ +YT+ L++++ G +++    PA  
Sbjct: 228 VMSTQAIFVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGMQDWKTKPASQ 287

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 237
           IA +YWRL   +T+KDVVL +RADEAHHR VNH  S + +
Sbjct: 288 IAINYWRLSQEATMKDVVLAIRADEAHHRVVNHTLSSMRH 327


>gi|322697635|gb|EFY89413.1| Alternative oxidase [Metarhizium acridum CQMa 102]
          Length = 354

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 154 VRFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 213

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFNA F+ YL+ P+  HR VGYLEEEA+H+YT  ++E++ G++    
Sbjct: 214 WFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPKWA 273

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
                 P IA  YW +P  N T+KD++L +RADEA HR VNH   +++      +E P P
Sbjct: 274 DPKFQIPDIAVQYWNMPEGNRTMKDLILYIRADEAGHRGVNHTLGNLNQ-----KEDPNP 328

Query: 249 L 249
            
Sbjct: 329 F 329


>gi|156061475|ref|XP_001596660.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980]
 gi|154700284|gb|EDO00023.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 360

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 137/226 (60%), Gaps = 33/226 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 75
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 96  HRKPRDFSDRVALCMVRFLRWCTDFATGYKHNVEEPKKASDSNAVAATKPYQMSERKWLI 155

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 156 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 215

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + R ++   QGVFFN++F+ YL+SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 216 FMRTMILGAQGVFFNSFFICYLLSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWSD 275

Query: 191 ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
            N  AP +A +YW +P +  +++D++  +RADEA HR+VNH   ++
Sbjct: 276 PNFKAPDLAIEYWGMPEDQRSMRDLLYYIRADEAKHREVNHTLGNL 321


>gi|169858069|ref|XP_001835681.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
 gi|116503357|gb|EAU86252.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
          Length = 376

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 7/206 (3%)

Query: 35  DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 94
           DL    K    P  + D     TV+ LR    +   + +  R + LE++A VPGMV   L
Sbjct: 133 DLVSGYKHKPLPPNYKD----LTVQHLRDQGYILDDKGWLRRILFLESIAGVPGMVAATL 188

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H +SLR      GWI   LEEAENERMHLMTFM + KP    RA+V   QGVF+N +FL
Sbjct: 189 RHLQSLRLMRRDSGWIHTCLEEAENERMHLMTFMTLRKPSIAFRAMVLGAQGVFYNLFFL 248

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 211
            Y+ SPK  HR VGYLEEEA+ +YT+ +KEL+ G I   E  PAP IA DYWR+ P++ +
Sbjct: 249 SYIFSPKTCHRFVGYLEEEAVVTYTKCIKELEDGLIPEWEGKPAPEIAIDYWRMSPDAKM 308

Query: 212 KDVVLVVRADEAHHRDVNHYASDIHY 237
            D++  VR+DE+ HR VNH  +++++
Sbjct: 309 IDLLYAVRSDESTHRFVNHSLANLNH 334


>gi|389630020|ref|XP_003712663.1| alternative oxidase [Magnaporthe oryzae 70-15]
 gi|51701271|sp|O93788.1|AOX_MAGO7 RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=AOXMg; AltName: Full=MgAOX; Flags: Precursor
 gi|12240249|gb|AAG49588.1|AF325683_1 alternative terminal oxidase [Magnaporthe grisea]
 gi|3928513|dbj|BAA34672.1| alternative oxidase [Magnaporthe grisea]
 gi|351644995|gb|EHA52856.1| alternative oxidase [Magnaporthe oryzae 70-15]
          Length = 377

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 132/225 (58%), Gaps = 31/225 (13%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-------------------------FFQRRYGCRA 77
           H  P T  DK A   V+  RW  D                            + ++  R 
Sbjct: 93  HRKPRTLGDKFAWSLVRISRWGMDKVSGLSSEQQQINKGSPTTSIVAAKPLTEAQWLSRF 152

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE++AAVPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P W  
Sbjct: 153 IFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWLM 212

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----EN 192
           + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  ++EL++G++       
Sbjct: 213 KILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSDPK 272

Query: 193 VPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 236
              P IA  YW +P  + T++D++L +RADEA+HR V+H   +++
Sbjct: 273 FQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 317


>gi|317157513|ref|XP_001825718.2| alternative oxidase [Aspergillus oryzae RIB40]
          Length = 226

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 131/206 (63%), Gaps = 22/206 (10%)

Query: 53  MALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGGML 94
           MAL TV+ LRW  DL                    + ++  R + LE+VA VPGMV  ML
Sbjct: 1   MALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVAGVPGMVAAML 60

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A Q VFF  + L
Sbjct: 61  RHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAAQCVFFTGFSL 120

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS-T 210
            YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  YW++P    +
Sbjct: 121 AYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIKYWQMPEGQRS 180

Query: 211 LKDVVLVVRADEAHHRDVNHYASDIH 236
           ++ ++L VRADEA+HRDVNH   +++
Sbjct: 181 IRSLLLCVRADEANHRDVNHTLGNLN 206


>gi|393243185|gb|EJD50700.1| alternative oxidase [Auricularia delicata TFB-10046 SS5]
          Length = 370

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 140/259 (54%), Gaps = 33/259 (12%)

Query: 9   EAPKV---NKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPT 65
           +AP+V      D     W  F P    + + ++ + +H    T SDK+A + V  LR   
Sbjct: 49  DAPRVEPKGSADVPTGDWVLFHPAYTKQENDAVRVVRHER-KTMSDKLAAFFVAGLRRGF 107

Query: 66  DL----------------FFQRRYGC----------RAMMLETVAAVPGMVGGMLLHCKS 99
           D+                  Q R G           R + LE++A VPGMV     H +S
Sbjct: 108 DIVSRYKHKDIPPNSNMNLQQLREGGYTMDPHMWLNRILFLESIAGVPGMVAATCRHLRS 167

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 159
           LR      GWI  LLEEAENERMHLMTFM +  P    RAL+   QGVF+N +F  YL S
Sbjct: 168 LRLMRRDAGWIHTLLEEAENERMHLMTFMTLRNPSIGFRALILGAQGVFYNLFFFSYLFS 227

Query: 160 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVL 216
           PK  HR VG LEEEA+++YT+ + ++  G++    + PAP IA DYWRLP N+TL DV+ 
Sbjct: 228 PKTCHRFVGILEEEAVYTYTQCISDIKNGHLPEWADKPAPEIAIDYWRLPKNATLLDVIY 287

Query: 217 VVRADEAHHRDVNHYASDI 235
            VR+DE+ HR VNH  +++
Sbjct: 288 AVRSDESTHRFVNHTLANL 306


>gi|51701285|sp|Q8NJ59.1|AOX_BOTFU RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|21953239|emb|CAD42731.1| alternative oxidase [Botryotinia fuckeliana]
          Length = 361

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 75
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 97  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 156

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + R ++   QGVFFN++FL YL SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 217 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 276

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            +  AP +A +YW +P  N +++D++  +RADEA HR+VNH   ++
Sbjct: 277 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNL 322


>gi|51701290|sp|Q96UR9.1|AOX_MONFR RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=MfAOX1; Flags: Precursor
 gi|16517111|gb|AAL24516.1| alternative oxidase [Monilinia fructicola]
          Length = 358

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 75
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 94  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKTASDSNAVTATKPYQMSERKWLI 153

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGL 213

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + R ++   QGVFFN++FL YL SPK  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 214 FMRTMILGAQGVFFNSFFLCYLFSPKTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 273

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            N  AP +A +YW +P  + +++D++  +RADEA HR+VNH   ++
Sbjct: 274 PNFKAPDLAIEYWGMPEGHRSMRDLLYYIRADEAKHREVNHTLGNL 319


>gi|347832413|emb|CCD48110.1| aox, alternative oxidase [Botryotinia fuckeliana]
          Length = 358

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 75
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 94  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 153

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 213

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + R ++   QGVFFN++FL YL SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 214 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 273

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            +  AP +A +YW +P  N +++D++  +RADEA HR+VNH   ++
Sbjct: 274 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNL 319


>gi|154313707|ref|XP_001556179.1| alternative oxidase [Botryotinia fuckeliana B05.10]
          Length = 361

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 75
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 97  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 156

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + R ++   QGVFFN++FL YL SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 217 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 276

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 235
            +  AP +A +YW +P  N +++D++  +RADEA HR+VNH   ++
Sbjct: 277 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNL 322


>gi|393212505|gb|EJC98005.1| alternative oxidase [Fomitiporia mediterranea MF3/22]
          Length = 379

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 3/182 (1%)

Query: 57  TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
           +VK LR    +  +  +  R + LET+A +PGM    + H  SLR      GWI  LLEE
Sbjct: 149 SVKELREQGYIMTETGWMNRCLFLETIAGIPGMAAATIRHLHSLRLLRRDAGWIHTLLEE 208

Query: 117 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           AENERMHLM+F+ + KP  + R L+   QGVF+N +F  YL++P+  HR VGYLEEEA+ 
Sbjct: 209 AENERMHLMSFLAIRKPGIFMRGLILGAQGVFYNVFFFSYLMAPRVCHRFVGYLEEEAVK 268

Query: 177 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +YT  + +L+ G     EN PAP IA DYWRL  N+TL D++  +R+DE  HR VNH  +
Sbjct: 269 TYTALIADLENGRFPEWENKPAPPIAKDYWRLRDNATLLDMIYAIRSDEVTHRFVNHSLA 328

Query: 234 DI 235
           ++
Sbjct: 329 NL 330


>gi|330907160|ref|XP_003295728.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
 gi|311332743|gb|EFQ96174.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
          Length = 352

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 136/235 (57%), Gaps = 34/235 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTD-------------------------LFFQRRYGCRA 77
           H    T SDK+AL  VK LRW  D                            + +Y  R 
Sbjct: 92  HREAKTMSDKVALLAVKVLRWGLDKATGYKHHKALDVDAKNPVAARKKFAMNEEKYLIRN 151

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 152 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQQPGRFM 211

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R +V   QGV+ NA F  YL+SP+  HR VGYLEEEA+ +YT  +++LD G +   E + 
Sbjct: 212 RLMVLGAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQIEDLDAGRLPKWEKMQ 271

Query: 195 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
           AP IA DYW +P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 272 APEIAIDYWNMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 321


>gi|396466567|ref|XP_003837720.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
 gi|312214283|emb|CBX94276.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
          Length = 356

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 135/235 (57%), Gaps = 34/235 (14%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-------------------------FFQRRYGCRA 77
           H    T SDK+AL  VK LRW  D                            + +Y  R 
Sbjct: 96  HREAQTISDKLALVAVKILRWGLDTATGYKHGKAVKLNAKDPEAAKQKFAMTEEKYLVRN 155

Query: 78  MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 137
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ KP  + 
Sbjct: 156 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESFNERMHLLVFLKMQKPGPFM 215

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R +V   QGV+ NA F  YL+SP+  HR VGYLEEEA+ +YT  +++LD G +   E + 
Sbjct: 216 RFMVLVAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQIEDLDAGRLPKWEKME 275

Query: 195 APAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
           AP IA DYW +P    T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 276 APEIAVDYWHMPEGRRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 325


>gi|443697354|gb|ELT97860.1| hypothetical protein CAPTEDRAFT_122794 [Capitella teleta]
          Length = 305

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 130/220 (59%), Gaps = 17/220 (7%)

Query: 30  EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRR-------YGCRAMML 80
           E Y+ +++     H  P  F D  A   V++ R   D    + R        +  R   L
Sbjct: 81  EVYDVNIT-----HKKPVGFIDNFAYLGVQTTRKVFDFLTGYNRTPSPSNAVWVNRLCFL 135

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           ETVA VPGMV  M+ H +SLR+     GWI  LLEEAENERMHLM F+++ +P    R  
Sbjct: 136 ETVAGVPGMVAAMVRHLESLRKMRRDHGWIHTLLEEAENERMHLMVFLQIKQPSLLFRLS 195

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPA 197
           V + Q +F + + + YL+SPK  HR VGYLEEEA+ +YT+ L++++ G ++     PA  
Sbjct: 196 VMSTQAIFVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGMQEWKTKPASQ 255

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 237
           IA +YWRL   +T+KDVVL +RADEAHHR VNH  S + +
Sbjct: 256 IAINYWRLSQEATMKDVVLAIRADEAHHRVVNHTLSSMRH 295


>gi|440469885|gb|ELQ38976.1| alternative oxidase [Magnaporthe oryzae Y34]
 gi|440482974|gb|ELQ63417.1| alternative oxidase [Magnaporthe oryzae P131]
          Length = 387

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++AAVPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P 
Sbjct: 160 SRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPG 219

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W  + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  ++EL++G++    
Sbjct: 220 WLMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWS 279

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 236
                 P IA  YW +P  + T++D++L +RADEA+HR V+H   +++
Sbjct: 280 DPKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 327


>gi|145350126|ref|XP_001419468.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357496|ref|XP_001422954.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579700|gb|ABO97761.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583198|gb|ABP01313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 221

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 123/206 (59%), Gaps = 13/206 (6%)

Query: 43  HHAPTTFSDKMALWTVKSLRW---------PTDLFFQRRYGCRAMMLETVAAVPGMVGGM 93
           H  P    D +A   V+  RW         P        +  R + LETVA VPGMVG M
Sbjct: 16  HRQPRHVRDYLAYGLVQFSRWSFDKVTGYTPKKSLTTDGWLMRFIFLETVAGVPGMVGAM 75

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
           L H  SLR  +   GWI  LLEEAENERMHL+TF+++ +P    R  V   QGVFFNA+F
Sbjct: 76  LRHMMSLRTLKRDHGWIHTLLEEAENERMHLLTFLKLREPGLMFRLAVLGAQGVFFNAFF 135

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN----VPAPAIATDYWRLPPNS 209
           L YLISP+  HR VGYLEEEA+ +YT  L ++D     +    +PAP +A  YWR+P ++
Sbjct: 136 LSYLISPRTCHRFVGYLEEEAVRTYTHALHDIDGDGPASEWATMPAPKLAIKYWRMPDDA 195

Query: 210 TLKDVVLVVRADEAHHRDVNHYASDI 235
           T++D+++ VRADEA H  VNH  S +
Sbjct: 196 TVRDLIIAVRADEASHSHVNHTLSSM 221


>gi|340520319|gb|EGR50555.1| predicted protein [Trichoderma reesei QM6a]
          Length = 315

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H  SLR  +   GWI+ LLEE+ NERMHL+TFM + +P 
Sbjct: 115 VRFVFLESIAGVPGMVGGMLRHLSSLRYMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 174

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFN+ F+ YL+ PK  HR VGYLEEEA+H+YT  + E+++G++    
Sbjct: 175 WFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAILEIEEGHLPKWS 234

Query: 191 -ENVPAPAIATDYWRLP-PNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
             N   P IA  YWR+P  + T+KD+++ +RADEA HR VNH   +++      +E P P
Sbjct: 235 NPNFRIPDIAVQYWRMPEEHRTMKDLIMYIRADEASHRGVNHTLGNLNQ-----KEDPNP 289

Query: 249 L 249
            
Sbjct: 290 F 290


>gi|406862534|gb|EKD15584.1| hypothetical protein MBM_06212 [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 355

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 38/240 (15%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------------------------- 75
           H  P  FSD++AL+ V+ LR+  D   + ++                             
Sbjct: 91  HRKPEDFSDRIALFMVRLLRFGMDTATRYKHDVEEPKKVGDSNAVADTKPYRMSEPKWLI 150

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPGMV GM+ H  SLRR     GWI+ LLEEA NERMHL+TFM++A+P  
Sbjct: 151 RMVFLESVAGVPGMVAGMIRHLHSLRRLRRDNGWIETLLEEAYNERMHLLTFMKMAEPGR 210

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 190
           + R ++   QGVFFN+  L YLISP+  HR VGYLEEEA+ +YT  +K+++ G +     
Sbjct: 211 FMRFMILGAQGVFFNSMVLFYLISPRTCHRFVGYLEEEAVLTYTLAIKDIEAGKLPKWQD 270

Query: 191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 249
                P +A +YW++P  N T++D++L +RADEA HR+VNH   ++       +E P P 
Sbjct: 271 PKFKVPELAVNYWKMPEGNRTMRDLLLYIRADEAKHREVNHTFGNL-----DQKEDPNPF 325


>gi|348681991|gb|EGZ21807.1| hypothetical protein PHYSODRAFT_496550 [Phytophthora sojae]
          Length = 306

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/208 (46%), Positives = 135/208 (64%), Gaps = 13/208 (6%)

Query: 41  KKHHAPTTFSDKMALWTVKSLR----------WPTDLFFQRRYGCRAMMLETVAAVPGMV 90
           + HH      +++A   VK+LR           P     ++ +  R + LE+VA VPGMV
Sbjct: 85  QTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEKDWLNRCLFLESVAGVPGMV 144

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
           GGML H +SLR  +   GWI  LLEEAENERMHL+ FM + +P ++ RALV   QGVFFN
Sbjct: 145 GGMLRHLRSLRLLKRDYGWIHTLLEEAENERMHLLIFMNIKQPGYFFRALVVGAQGVFFN 204

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPP 207
            +FL YL+SPK  HR VGYLEEEA+ +Y+  L++++ G+++      AP IA  Y++LP 
Sbjct: 205 GFFLTYLVSPKTCHRFVGYLEEEAVKTYSCLLQDIEDGHLDAWKEKKAPLIAQTYYKLPE 264

Query: 208 NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           ++++ DVV  VRADEA+HRDVNH  +++
Sbjct: 265 DASIYDVVKCVRADEANHRDVNHAFANL 292


>gi|320587810|gb|EFX00285.1| alternative oxidase [Grosmannia clavigera kw1407]
          Length = 823

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/236 (39%), Positives = 136/236 (57%), Gaps = 31/236 (13%)

Query: 31  AYEADLSIDLKK-HHAPTTFSDKMALWTVKSLRWPTDL---------------------- 67
            Y A+  + +K  H  P T  D++A   ++  RW  D                       
Sbjct: 553 GYTAEEMLAVKPGHRPPETMGDRLAWRLIRICRWGMDTATGMSSSQQTDVRKPTTAVVAE 612

Query: 68  --FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
               + ++  R + LE++A VPGMV GML H +S+R+ +   GWI+ LLEE+ NERMHL+
Sbjct: 613 KPLTEAQWLIRFIFLESIAGVPGMVAGMLRHLRSIRQLKRDNGWIETLLEESFNERMHLL 672

Query: 126 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 185
           TF+++ +P  + + ++   QGV+FNA FL YLISP+  HR VGYLEEEA+H+YT  L E+
Sbjct: 673 TFLKMCEPGRFMKLMILGAQGVYFNAMFLSYLISPRICHRFVGYLEEEAVHTYTRCLAEM 732

Query: 186 DKGNIE--NVPA---PAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDI 235
           D G     + PA   P IA  YW +P +  T+KD++L +RADEA HR VNH   ++
Sbjct: 733 DAGGTPLWSDPAFKVPEIAVKYWHMPEDRRTMKDLILYIRADEASHRGVNHTLGNL 788


>gi|196000520|ref|XP_002110128.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
 gi|190588252|gb|EDV28294.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
          Length = 181

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 112/164 (68%), Gaps = 3/164 (1%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LETVA VPGMV  M  H  SLRR     GWI  LLEEAENERMHL+T + + +P  
Sbjct: 7   RIIFLETVAGVPGMVAAMTRHLHSLRRMRRDYGWIHTLLEEAENERMHLLTALHLKRPGP 66

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
           + RA V   QG+F N + L YLISP+F HR VGYLEEEA+ +YT+ L ++D+G +     
Sbjct: 67  FFRACVILGQGIFVNFFILSYLISPRFCHRFVGYLEEEAVITYTKCLNQIDRGYLPMWAK 126

Query: 193 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 236
           + AP IA  YW+L P++ ++DV+L +RADEAHHR VNH  + I+
Sbjct: 127 MDAPDIARTYWQLKPDAKMRDVILAIRADEAHHRLVNHTLASIN 170


>gi|388582970|gb|EIM23273.1| alternative oxidase, partial [Wallemia sebi CBS 633.66]
          Length = 401

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 113/163 (69%), Gaps = 3/163 (1%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE+VA VPG V  ML H +SLRR +  GG+I  LL EAENERMHLM+F+ V KP  
Sbjct: 183 RFIFLESVAGVPGFVASMLRHLRSLRRMDRDGGYINMLLAEAENERMHLMSFLAVEKPSI 242

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
           + RA+V   QGVFFN +F+ YLI+PK  HR    LEEEA+ +YT  +KE+  G +   ++
Sbjct: 243 WMRAMVLGAQGVFFNLFFVSYLINPKICHRFTAVLEEEAVVTYTRAMKEIKAGYVPGWKH 302

Query: 193 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
              P+IA  YW+LP +ST+ D+V+VVRADE++HR  NH  S++
Sbjct: 303 KEIPSIARGYWQLPADSTMLDLVMVVRADESNHRFTNHTLSEL 345


>gi|255943405|ref|XP_002562471.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587204|emb|CAP94868.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 331

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 23/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTD-------------------LFFQRRYGCRAMMLETV 83
           H    T+ D+ AL TV+ LRW  D                   +  + ++  R + LE+V
Sbjct: 78  HRKAYTWQDRAALGTVRLLRWGMDFVSGYNSRPANTNTLSKAYVMTEEKWITRFVFLESV 137

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMV GML H KS+RR     GWI+ LLEEA NERMHL+TF+++A+P    R +V  
Sbjct: 138 AGVPGMVAGMLRHLKSIRRMRRDNGWIETLLEEAYNERMHLLTFLKLAEPGPAMRFMVLG 197

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            Q VFF+ + L YLISP+  HR VGYLEEEA+ +Y++ +++L+ G++   E + AP +A 
Sbjct: 198 AQWVFFSGFSLAYLISPQICHRFVGYLEEEAVITYSKAIRDLEDGHLPAWEGLQAPEMAI 257

Query: 201 DYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 235
            YW++P     ++ ++L VRADEA HRDVNH   ++
Sbjct: 258 KYWQMPEGQRCMRSLLLYVRADEAKHRDVNHTLGNL 293


>gi|344232988|gb|EGV64861.1| hypothetical protein CANTEDRAFT_104081 [Candida tenuis ATCC 10573]
          Length = 312

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 23/216 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF-------------------QRRYGCRAMMLETV 83
           H  P T SDK+A   +++ R   D F                    + ++  R + LE+V
Sbjct: 59  HRVPITVSDKIASGAIQTFRSCFDFFTGYKHPTKGVSYEGTRFEMTESKWLTRCIFLESV 118

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A +PGM    + H  SLR  +    WI+ LL+EA NER+HL+TF+ + KP W+ R  +F 
Sbjct: 119 AGIPGMTAAFIRHLHSLRLLKRDKAWIETLLDEAYNERIHLLTFINLGKPSWFTRFFIFM 178

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 200
            QGVF N +F  YL  PKF HR VGYLEEEA+ +Y+ F+KELD G +   +++  P +A 
Sbjct: 179 GQGVFCNIFFFNYLFFPKFCHRFVGYLEEEAVSTYSHFIKELDAGKLKKFDDMAIPPVAI 238

Query: 201 DYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            Y+  L   ST++D++L VRADEA HR+VNH  +++
Sbjct: 239 QYYGTLDEKSTIRDLILCVRADEAKHREVNHTFANL 274


>gi|150864598|ref|XP_001383483.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
 gi|158518684|sp|Q9P414.2|AOX_PICST RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=SHAM-sensitive terminal oxidase; Flags: Precursor
 gi|149288858|gb|AAF97475.2| SHAM-sensitive terminal oxidase [Scheffersomyces stipitis]
 gi|149385854|gb|ABN65454.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
          Length = 357

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 128/221 (57%), Gaps = 27/221 (12%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYG-------CRAM 78
           +H  P TF DKMA   ++ +R   D                 F   RY         R +
Sbjct: 97  EHRPPRTFGDKMAFRGIELVRGSFDFVTGYKKPKTQADIDSGFKGTRYEMTEGKWLTRCI 156

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LE++A VPG V   + H  SLR  +    WI+ LL+EA NERMHL+TF+++ KP W+ R
Sbjct: 157 FLESIAGVPGAVASFIRHLHSLRLLKRDKAWIETLLDEAFNERMHLLTFIKIGKPSWFTR 216

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 195
            +++  QGVF N +FL YL +PK+ HR VGYLEEEA+ +YT F+ EL  G +   EN+  
Sbjct: 217 TIIYVGQGVFCNLFFLFYLANPKYCHRFVGYLEEEAVSTYTHFVHELQSGKLPKFENIKI 276

Query: 196 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           P IA  YW  L  NS++ D++L +RADEA HR+VNH  +++
Sbjct: 277 PTIAWQYWPELTENSSMLDLILRIRADEAKHREVNHTLANL 317


>gi|42733304|dbj|BAD11307.1| alternative oxidase [Trypanosoma vivax]
          Length = 328

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 122/209 (58%), Gaps = 10/209 (4%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 94
           H       D +A   V++ RW  D F   R+G         R + LETVA VPGMVGGML
Sbjct: 78  HKPAEGIVDTLAYRLVRTCRWAFDTFSLYRFGSLTEQKVINRCLFLETVAGVPGMVGGML 137

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H  SLR+     GWI  LL EAENERMHLMTF+E+ +P    R  +   Q + ++   +
Sbjct: 138 RHLTSLRQMRRDKGWINTLLVEAENERMHLMTFIELRQPGVVFRLSIKITQAIMYSFLLI 197

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNSTLK 212
            Y+ SP+F HR VGYLEEEA+ +YT  L+ +D G +  +    P +A  YW L  ++T +
Sbjct: 198 AYITSPRFVHRFVGYLEEEAVVTYTGILRAIDDGRLPPMKNAVPDVARVYWGLNKDATFR 257

Query: 213 DVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           D++ V+RADEA HR VNH  +D+H +  Q
Sbjct: 258 DLINVIRADEAEHRVVNHTFADMHAKRLQ 286


>gi|392577482|gb|EIW70611.1| hypothetical protein TREMEDRAFT_28860 [Tremella mesenterica DSM
           1558]
          Length = 363

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 120/181 (66%), Gaps = 3/181 (1%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           ++ LR    L   + +  R ++LE+ A VPGMV G L H +SLRR    GGWI  LLEEA
Sbjct: 127 IEELRAKGLLLSDKAWLMRIILLESFAGVPGMVAGTLRHLRSLRRLRRDGGWIHTLLEEA 186

Query: 118 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           ENERMHL+TFM +A+P W  R  V   QGV +N  F  YLI+PK AHR V  LEEEA+ +
Sbjct: 187 ENERMHLLTFMTIAQPSWLTRVAVLGAQGVMYNLLFATYLITPKTAHRFVAALEEEAVKT 246

Query: 178 YTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           YT  ++++ KG +   ++VPAP IA DYWRLP ++ L DV+  VRADEA HR VNH  +D
Sbjct: 247 YTHCVEDMQKGLVPEWDDVPAPQIAIDYWRLPQSAKLIDVIRAVRADEATHRFVNHSLAD 306

Query: 235 I 235
           +
Sbjct: 307 L 307


>gi|322711578|gb|EFZ03151.1| Alternative oxidase [Metarhizium anisopliae ARSEF 23]
          Length = 363

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 120/190 (63%), Gaps = 20/190 (10%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 154 VRFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 213

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--- 191
           W+ + ++   QGVFFNA F+ YL+ P+  HR VGYLEEEA+H+YT  ++E++ G++    
Sbjct: 214 WFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPKWA 273

Query: 192 ----NVPAPAIA-------TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
                +P  A+          YW +P  N T+KD++L +RADEA HR VNH   +++   
Sbjct: 274 DAKFQIPDIAVQGALFSHIVQYWNMPEGNRTMKDLILYIRADEAGHRGVNHTLGNLNQT- 332

Query: 240 RQLRESPAPL 249
               E P P 
Sbjct: 333 ----EDPNPF 338


>gi|19547976|gb|AAL87459.1| alternative oxidase [Aspergillus fumigatus]
          Length = 149

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 108/149 (72%), Gaps = 4/149 (2%)

Query: 83  VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 142
           VA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V 
Sbjct: 1   VAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVL 60

Query: 143 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 199
             QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+++ G +   E + AP IA
Sbjct: 61  GAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWEKLDAPEIA 120

Query: 200 TDYWRLPPNS-TLKDVVLVVRADEAHHRD 227
             YW +P     ++D++L VRADEA HR+
Sbjct: 121 VQYWNMPEGQRKMRDLLLYVRADEAKHRE 149


>gi|388853396|emb|CCF53016.1| related to alternative oxidase precursor, mitochondrial [Ustilago
           hordei]
          Length = 417

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 8/178 (4%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LET+A VPGMV     H +SLR  +   GWI  LL++AENERMHL+TFM +AKP  
Sbjct: 205 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTLLQDAENERMHLLTFMHLAKPGT 264

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
             RA     QGVF+N +F+ YL SP+ AHR VG LEEEA+ +Y+  L+++ +G +   EN
Sbjct: 265 IARAFALLAQGVFYNLFFIFYLFSPRIAHRFVGVLEEEAVLTYSCILEDIKQGRLPEWEN 324

Query: 193 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 250
           VPAP IA  YW+L   + L DV+  VRADEA HR +NH  + + Y     +E P P  
Sbjct: 325 VPAPEIAKHYWQLGDQALLVDVIRAVRADEATHRCINHTLASLDY-----KEDPNPFA 377


>gi|62241308|dbj|BAD93711.1| alternative oxidase 1b [Candida maltosa]
          Length = 348

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 8/182 (4%)

Query: 59  KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 118
           K  RW      + ++  R + LE+VA VPG V G L H  SLR       WI+ L +EA 
Sbjct: 130 KGTRWEMT---EGKWMTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLYDEAY 186

Query: 119 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 178
           NERMHL+TF+++ KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y
Sbjct: 187 NERMHLLTFIKIGKPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTY 246

Query: 179 TEFLKELD-KGNI---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           T  ++E+D KG +   EN+  P IA  YW  L P ST +D++L +RADEA HR+VNH  +
Sbjct: 247 THLIEEIDTKGKLPGFENMKIPEIAVQYWPELTPESTFRDLILRIRADEAKHREVNHTFA 306

Query: 234 DI 235
           ++
Sbjct: 307 NL 308


>gi|255728095|ref|XP_002548973.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133289|gb|EER32845.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 379

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 36/240 (15%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC-----------------------RAMM 79
           H  P T  DK++ +   + R   D  F   Y C                       R + 
Sbjct: 121 HRPPVTLGDKISYYGTMTARKCFD--FVTGYACPLPDKPHMYDGTRWEMTEGKWMTRVIF 178

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE+VA VPG V G + H  SLR       WI++L +EA NERMHL+TF+++ KP W+ R 
Sbjct: 179 LESVAGVPGSVAGFIRHLHSLRMLTRDKAWIESLQDEAYNERMHLLTFIKIGKPSWFTRT 238

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK----GNIENVPA 195
           +++  QGVF N +F  YL++P++ HR VGYLEEEA+ +YT  L ELDK     N +N+  
Sbjct: 239 IIYIGQGVFTNIFFFLYLMNPRYCHRFVGYLEEEAVRTYTHLLDELDKPGKLPNFQNMQI 298

Query: 196 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH-YQGR-----QLRESPAP 248
           P IA DYW  L   S+ KD+V ++RADE+ HR+VNH  +++  ++ R     Q+++ P P
Sbjct: 299 PTIAVDYWPSLSEESSFKDLVAIIRADESKHREVNHTLANLDTWKDRNPFALQIKDDPNP 358


>gi|358378712|gb|EHK16393.1| hypothetical protein TRIVIDRAFT_216965 [Trichoderma virens Gv29-8]
          Length = 359

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 11/181 (6%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H  SLR  +   GWI+ LLEE+ NERMHL+TFM + +P 
Sbjct: 159 IRFVFLESIAGVPGMVGGMLRHLSSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 218

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
            + + ++   QGVFFN+ F+ YL+ PK  HR VGYLEEEA+H+YT  + E+++G++    
Sbjct: 219 LFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIAEIEEGHLPKWA 278

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 248
                 P IA  YW +P  N T+KD++L +RADEA HR VNH   +++      +E P P
Sbjct: 279 DPKFRIPDIAVQYWNMPEGNRTMKDLILYIRADEASHRGVNHTLGNLNQ-----KEDPNP 333

Query: 249 L 249
            
Sbjct: 334 F 334


>gi|209880133|ref|XP_002141506.1| alternative oxidase family protein [Cryptosporidium muris RN66]
 gi|209557112|gb|EEA07157.1| alternative oxidase family protein [Cryptosporidium muris RN66]
          Length = 336

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 120/199 (60%), Gaps = 10/199 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGMLL 95
           H  P T  D++A  +V  LR   DL    +YG      CR ++ LET+A VPGMVG M+ 
Sbjct: 122 HITPETLIDRLAYNSVLFLRKSFDLLTGYKYGHDERKWCRRIVFLETIAGVPGMVGAMVR 181

Query: 96  HCKSLRRFEHSGGWIKALLEEAENERMHLM-TFMEVAKPKWYERALVFAVQGVFFNAYFL 154
           H  SLRR E   GWI  LLEEAENERMHLM + +    P  + R  V   Q  F   Y L
Sbjct: 182 HLHSLRRMERDYGWIHTLLEEAENERMHLMISLLLRHPPSLFVRLSVLGAQFGFLIYYTL 241

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NVPAPAIATDYWRLPPNSTLK 212
            Y ISPK+ HR VGYLEEEA+ +YT  + ++D G +     PAP  A  Y+ LP ++TLK
Sbjct: 242 CYAISPKYCHRFVGYLEEEAVRTYTRLISDIDLGKLPEFTSPAPKYAKLYYGLPKDATLK 301

Query: 213 DVVLVVRADEAHHRDVNHY 231
           DV L +R DE+HHRDVNH+
Sbjct: 302 DVFLAMRRDESHHRDVNHH 320


>gi|342871326|gb|EGU73992.1| hypothetical protein FOXB_15497 [Fusarium oxysporum Fo5176]
          Length = 345

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 15/185 (8%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 141 TRFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 200

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
           W+ + ++   QGVFFN  F+ YL SPK  HR VGYLEEEA+H+YT  +KE+++G++    
Sbjct: 201 WFMKVMIIGAQGVFFNGLFVCYLFSPKIVHRFVGYLEEEAVHTYTRCIKEIEEGHLPKWS 260

Query: 191 -ENVPAPAIATDYWRLPPNS-----TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRE 244
             +   P IA   + L   S     T+KD++L +RADEA HR VNH   +++       E
Sbjct: 261 DPSFRIPDIAIQVFGLHLQSTFGVHTMKDLILYIRADEAVHRGVNHTLGNLNQN-----E 315

Query: 245 SPAPL 249
            P P 
Sbjct: 316 DPNPF 320


>gi|51701296|sp|O93853.1|AOX1_CANAL RecName: Full=Alternative oxidase 1, mitochondrial; Flags:
           Precursor
 gi|4090947|gb|AAC98914.1| alternative oxidase [Candida albicans]
          Length = 379

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 120/189 (63%), Gaps = 9/189 (4%)

Query: 59  KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 118
           K  RW      + ++  R + LE++A VPG V G + H  SLR       WI+ L +EA 
Sbjct: 161 KGTRWE---MTEEKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAY 217

Query: 119 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 178
           NERMHL+TF+++ KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y
Sbjct: 218 NERMHLLTFIKIGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTY 277

Query: 179 TEFLKELDKGN----IENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNH-YA 232
           T  + ELD  N     + +P P IA  YW  L P S+ KD++L +RADEA HR++NH +A
Sbjct: 278 THLIDELDDPNKLPDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFA 337

Query: 233 SDIHYQGRQ 241
           +   +Q R 
Sbjct: 338 NLEQWQDRN 346


>gi|358400759|gb|EHK50085.1| hypothetical protein TRIATDRAFT_51260 [Trichoderma atroviride IMI
           206040]
          Length = 359

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 6/168 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMVGGML H +SLR  +   GWI+ LLEE+ NERMHL+TFM + +P 
Sbjct: 159 VRFVFLESIAGVPGMVGGMLRHLRSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 218

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 190
            + + ++   QGVFFN+ F+ YL+ PK  HR VGYLEEEA+H+YT  + E+++G++    
Sbjct: 219 LFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIHEIEEGHLPRWT 278

Query: 191 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 236
                 P IA  YW +P  + T+KD++L +RADEA HR VNH   +++
Sbjct: 279 DPKFRIPDIAVQYWHMPEGHRTMKDLILYIRADEAGHRGVNHTLGNLN 326


>gi|68464765|ref|XP_723460.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|68465142|ref|XP_723270.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445297|gb|EAL04566.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445494|gb|EAL04762.1| constitutive alternative oxidase [Candida albicans SC5314]
          Length = 379

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 111/166 (66%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPG V G + H  SLR       WI+ L +EA NERMHL+TF+++ KP 
Sbjct: 174 TRCIFLESIAGVPGSVAGFIRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 233

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----I 190
           W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + ELD  N     
Sbjct: 234 WFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNKLPDF 293

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           + +P P IA  YW  L P S+ KD++L +RADEA HR++NH  +++
Sbjct: 294 QKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANL 339


>gi|8676907|gb|AAF70262.2| alternative oxidase [Podospora anserina]
          Length = 146

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 107/146 (73%), Gaps = 4/146 (2%)

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
            VPGMV GML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 1   GVPGMVAGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRVMVIGA 60

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 201
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  ++EL+ GN+   +++ AP IA  
Sbjct: 61  QGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLPEWKDLDAPEIAVK 120

Query: 202 YWRLPPNS-TLKDVVLVVRADEAHHR 226
           YW++P     +KD++L +RADEA HR
Sbjct: 121 YWQMPEGQRKMKDLLLFIRADEAKHR 146


>gi|238878670|gb|EEQ42308.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 379

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 111/166 (66%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPG V G + H  SLR       WI+ L +EA NERMHL+TF+++ KP 
Sbjct: 174 TRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 233

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----I 190
           W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + ELD  N     
Sbjct: 234 WFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNKLPDF 293

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           + +P P IA  YW  L P S+ KD++L +RADEA HR++NH  +++
Sbjct: 294 QKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANL 339


>gi|116196990|ref|XP_001224307.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
 gi|88181006|gb|EAQ88474.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
          Length = 265

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 111/167 (66%), Gaps = 6/167 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LETVA +PG V G L H  S+RRF+   GWIK LLEE+ NERMHLMTF+ + +P 
Sbjct: 53  VRFVFLETVAGIPGAVAGGLRHLHSIRRFKLDQGWIKTLLEESYNERMHLMTFLAMYRPG 112

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG-----N 189
              R +VFA QG+F+N  F+GYLIS  F HR+VGYLE+EA+ +YT+ L E+DKG      
Sbjct: 113 RLMRFMVFAAQGIFYNTMFIGYLISLGFCHRLVGYLEDEAVATYTKCLAEMDKGWLPQWT 172

Query: 190 IENVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDI 235
                 P IA  YW++P    T++D++L +RADEA HR VNH   ++
Sbjct: 173 DPGFKIPDIAVQYWKMPEGRRTMRDLILYIRADEASHRGVNHTLGNL 219


>gi|149189352|ref|ZP_01867637.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836710|gb|EDL53662.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 149

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 102/137 (74%)

Query: 98  KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           K+LRR     GWI+ LL+EAENERMHLM F+++AKP W ER +V   QGVF   Y + YL
Sbjct: 1   KALRRMRDDEGWIRELLDEAENERMHLMIFLDIAKPSWLERLIVLLGQGVFIVVYSIIYL 60

Query: 158 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 217
           +S K AHR+VGY EEEA  SYTE+L+++D+G IEN+PAP IA DY++L  ++ L+DVVL 
Sbjct: 61  LSSKVAHRVVGYFEEEACKSYTEYLEKIDEGYIENIPAPQIAIDYYQLADDALLRDVVLR 120

Query: 218 VRADEAHHRDVNHYASD 234
           +R DEA HRD NH  +D
Sbjct: 121 IRQDEAGHRDRNHGFAD 137


>gi|241949571|ref|XP_002417508.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223640846|emb|CAX45161.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 389

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 11/185 (5%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPG V G + H  SLR       WI+ L +EA NERMHL+TF+++ KP 
Sbjct: 184 TRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 243

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----I 190
           W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + EL+  N     
Sbjct: 244 WFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIHELNDPNKLPDF 303

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNH-YASDIHYQGR-----QLR 243
           E +  P IA  YW  L P+S+ KD++L +RADEA HR++NH +A+   +Q R     Q++
Sbjct: 304 EKLSIPTIAVQYWPELTPDSSFKDLILRIRADEAKHREINHTFANLEQWQDRNPFALQIK 363

Query: 244 ESPAP 248
           +S  P
Sbjct: 364 DSDKP 368


>gi|93008053|gb|ABE97458.1| mitochondrial alternative oxidase [Komagataella pastoris]
          Length = 362

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 138/238 (57%), Gaps = 26/238 (10%)

Query: 28  PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLF------------------ 68
           P   Y  DL   +  +H  PT   DK+A   ++SLR   D F                  
Sbjct: 87  PHHGYRQDLMEKIHYEHREPTLIRDKLAFGLMRSLRVCFDFFSGYKHPKTKEGLEKLTPA 146

Query: 69  -FQ---RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
            +Q    ++  R ++LE++A VPG V   L H +SLR  +    +I+ L +EA NERMHL
Sbjct: 147 TYQMTPEKWLTRFIILESIAGVPGSVASFLRHLQSLRLLKRDKAFIQTLQDEAYNERMHL 206

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           +TF+E+ KP  + + L++A QGVF N +F  Y+++P   HR VGYLEEEA+++YT  L++
Sbjct: 207 LTFLEIGKPGPFMKVLLYASQGVFCNLFFFTYMLAPNACHRFVGYLEEEAVYTYTTCLED 266

Query: 185 LDKG---NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           +++G   +IE+   P IA DYW L  ++ ++D++  +RADEA HR+VNH  +++   G
Sbjct: 267 IERGLLPDIEHFKVPKIAKDYWHLSEDAKMRDLISYIRADEAKHREVNHTFANLKLDG 324


>gi|294655674|ref|XP_457848.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
 gi|199430515|emb|CAG85893.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
          Length = 338

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 114/168 (67%), Gaps = 4/168 (2%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMV   + H  SLR       WI+ LL+EA NERMHL+TF+++ +P W
Sbjct: 135 RCIFLESIAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFIKLGRPSW 194

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
           + R++++  QGVF N +F+ YLI+PK+ HR VGYLEEEA+ +YT  L+EL  G +   +N
Sbjct: 195 FTRSIIYIGQGVFCNLFFMCYLINPKYCHRFVGYLEEEAVSTYTHLLEELKMGKLKEFDN 254

Query: 193 VPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           +  PAI+  YW  L   S+  D++L +RADEA HR+VNH  ++++ + 
Sbjct: 255 IQIPAISWQYWPELDEKSSFTDLILRIRADEAKHREVNHTLANLNQKS 302


>gi|254571053|ref|XP_002492636.1| hypothetical protein [Komagataella pastoris GS115]
 gi|238032434|emb|CAY70457.1| Hypothetical protein PAS_chr3_0408 [Komagataella pastoris GS115]
 gi|328353360|emb|CCA39758.1| hypothetical protein PP7435_Chr3-0805 [Komagataella pastoris CBS
           7435]
          Length = 362

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 138/238 (57%), Gaps = 26/238 (10%)

Query: 28  PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLF------------------ 68
           P   Y  DL   +  +H  PT   DK+A   ++SLR   D F                  
Sbjct: 87  PHHGYRQDLMEKIHYEHREPTLIRDKLAFGLMRSLRVCFDFFSGYKHPKTKEGLEKLTPA 146

Query: 69  -FQ---RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
            +Q    ++  R ++LE++A VPG V   L H +SLR  +    +I+ L +EA NERMHL
Sbjct: 147 TYQMTPEKWLTRFIILESIAGVPGSVASFLRHLQSLRLLKRDKAFIQTLQDEAYNERMHL 206

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           +TF+E+ KP  + + L++A QGVF N +F  Y+++P   HR VGYLEEEA+++YT  L++
Sbjct: 207 LTFLEIGKPGPFMKVLLYASQGVFCNLFFFTYMLAPNACHRFVGYLEEEAVYTYTTCLED 266

Query: 185 LDKG---NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           +++G   +IE+   P IA DYW L  ++ ++D++  +RADEA HR+VNH  +++   G
Sbjct: 267 IERGLLPDIEHFKVPKIAKDYWHLSEDAKMRDLISYIRADEAKHREVNHTFANLKLDG 324


>gi|301106719|ref|XP_002902442.1| alternative oxidase, putative [Phytophthora infestans T30-4]
 gi|262098316|gb|EEY56368.1| alternative oxidase, putative [Phytophthora infestans T30-4]
          Length = 258

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 127/212 (59%), Gaps = 14/212 (6%)

Query: 12  KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTT-FSDKMALWTVKSLRWPTDLFFQ 70
           ++   +  E  W        Y+ D    +++ H P T   +++A   V++LR   D+   
Sbjct: 42  RITTSENGEPIWENPINHAVYDLDKITTMQQTHHPITKMHERVAYLAVQTLRTGFDIVSG 101

Query: 71  RR----------YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
            R          +  R + LE+VA VPGMVGGML H +SLR+F+   GWI  LLEEAENE
Sbjct: 102 YRGPGGAMTDKDWVNRCLFLESVAGVPGMVGGMLRHLRSLRKFKRDYGWIHTLLEEAENE 161

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHL+ FM + +P ++ R LV   QGVFFNA+FL YL+SPK  HR VGYLEEEA+ +YT 
Sbjct: 162 RMHLLIFMNIKQPGYFFRTLVLGAQGVFFNAFFLTYLVSPKTCHRFVGYLEEEAVKTYTC 221

Query: 181 FLKELDKGNIE---NVPAPAIATDYWRLPPNS 209
            LK+++ G+++      AP IA  Y++LP ++
Sbjct: 222 LLKDIEDGHLDAWKEKKAPLIAQTYYKLPEDA 253


>gi|448091414|ref|XP_004197325.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|448095979|ref|XP_004198356.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359378747|emb|CCE85006.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359379778|emb|CCE83975.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
          Length = 346

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 27/220 (12%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYG-------CRAMM 79
           H  P T  DK+    ++ +RW  D                 F   RY         R + 
Sbjct: 87  HRVPDTMGDKITYKAIQFVRWSFDFVTGYKKPHTPEEKLHSFAGTRYEMNEGKWLTRVIF 146

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE+VA VPGMV   + H  SLR  +    WI+ LL+EA NERMHL+TFM++ +P W+ + 
Sbjct: 147 LESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFMKLGRPSWFTKL 206

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 196
           +V+  QGVF N +F  YL++PK+ HR VGYLEEEA+ +Y+  L ELD G +   + V  P
Sbjct: 207 IVYIGQGVFCNLFFFAYLVNPKYCHRFVGYLEEEAVSTYSHLLDELDAGKLPRFDEVKIP 266

Query: 197 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            I+  YW  L  +S+  D+V ++RADEA HR+VNH  +++
Sbjct: 267 EISWHYWTELNEHSSFHDLVSLIRADEAKHREVNHTLANL 306


>gi|406601822|emb|CCH46595.1| Alternative oxidase, mitochondrial [Wickerhamomyces ciferrii]
          Length = 352

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 27/220 (12%)

Query: 43  HHAPTTFSDKMALWTVKSLRW----------PTDL-------------FFQRRYGCRAMM 79
           H  P T  DK+A   ++  R+          P D+               + ++  R + 
Sbjct: 91  HRKPITVGDKIANGGMRFCRYMFDFVTGYKKPKDVNGKLQTWEGTRYEMTEEKWLTRVIF 150

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE++A VPGMV   + H  S+R  +    WI+ LL+EA NERMHL+TFM++  P W+ R 
Sbjct: 151 LESIAGVPGMVAAFVRHLHSIRLLKRDKAWIETLLDEAYNERMHLLTFMKLGNPSWFTRL 210

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 196
           +++  QGVF N +FL YLI P++ HR VGYLEEEA+ +YT  +K+LD   +   +NV  P
Sbjct: 211 IIYVGQGVFCNLFFLIYLIRPRYCHRFVGYLEEEAVSTYTHLIKDLDAKRLPRFDNVKLP 270

Query: 197 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            IA  YW  L  NST +D+VL VRADE+ HR+VNH  +++
Sbjct: 271 EIAWVYWTSLDENSTFRDLVLRVRADESKHREVNHTLANL 310


>gi|255728097|ref|XP_002548974.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133290|gb|EER32846.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 361

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/250 (35%), Positives = 138/250 (55%), Gaps = 27/250 (10%)

Query: 13  VNKDDGSEWKWNCFRPWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLFF-- 69
           VN++D S +      P   +  +   ++   H  P TF DK++   +  +R   D F   
Sbjct: 72  VNRNDDSRYLTKPTYPHPVFPTEECENVTVTHREPRTFGDKLSYKGIHYVRKIFDFFTGY 131

Query: 70  -------------------QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI 110
                              + ++  R + LE+VA VPG V G + H  SLR  +    WI
Sbjct: 132 ADPSPSNPNQYVGTRYEMTEGKWMTRCIFLESVAGVPGSVAGFIRHLHSLRMLKRDKAWI 191

Query: 111 KALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 170
           + L +EA NERMHL+TF+++ KP W+ R++++  QGVF N +F  YL++P++ HR VGYL
Sbjct: 192 ETLHDEAYNERMHLLTFIKIGKPSWFTRSIIYVGQGVFTNVFFFLYLLNPRYCHRFVGYL 251

Query: 171 EEEAIHSYTEFLKELDK----GNIENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHH 225
           EEEA+ +YT  L+EL +     N + +  P +A  YW  L   S+ +D++L +RADEA H
Sbjct: 252 EEEAVRTYTHLLEELKEPGKLPNFQKMKIPTVAAQYWPELTNESSFRDLILRIRADEAKH 311

Query: 226 RDVNHYASDI 235
           R+VNH  +++
Sbjct: 312 REVNHTFANL 321


>gi|238878671|gb|EEQ42309.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 365

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ KP 
Sbjct: 160 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 219

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI--- 190
           W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL   G +   
Sbjct: 220 WFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAF 279

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 280 ETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 325


>gi|299752789|ref|XP_001832846.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
 gi|298410001|gb|EAU88999.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
          Length = 362

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 113/184 (61%), Gaps = 23/184 (12%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW--------------------IKALLE 115
           R + LET+A VPGMV   + H +SLR      GW                    I   LE
Sbjct: 136 RILFLETIAGVPGMVAATIRHLQSLRLMRRDNGWYGLNQRLRGMVGVLNACFHRIHTCLE 195

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 175
           EAENERMHLMTFM + +P    RA++ A QGVF+N +FL Y+ISPK  HR VGYLEEEA+
Sbjct: 196 EAENERMHLMTFMTLRRPSLPFRAIILAAQGVFYNLFFLSYIISPKTCHRFVGYLEEEAV 255

Query: 176 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232
           ++YT+ + EL+ G I    + PAP I+ DYWRL P++ + D++  VR+DE  HR VNH  
Sbjct: 256 YTYTKCINELEAGLIPEWTSKPAPEISIDYWRLSPDAKMLDLLYAVRSDETTHRFVNHSL 315

Query: 233 SDIH 236
           ++++
Sbjct: 316 ANLN 319


>gi|68465140|ref|XP_723269.1| inducible alternative oxidase 2 [Candida albicans SC5314]
 gi|46445296|gb|EAL04565.1| inducible alternative oxidase 2 [Candida albicans SC5314]
          Length = 365

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ KP 
Sbjct: 160 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 219

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI--- 190
           W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL   G +   
Sbjct: 220 WFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAF 279

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 280 ETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 325


>gi|51701359|sp|Q9UV71.1|AOX2_CANAL RecName: Full=Alternative oxidase 2, mitochondrial; Flags:
           Precursor
 gi|6650742|gb|AAF21993.1|AF116872_1 alternative oxidase [Candida albicans]
          Length = 365

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ KP 
Sbjct: 160 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 219

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI--- 190
           W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL   G +   
Sbjct: 220 WFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAF 279

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 280 ETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 325


>gi|358060729|dbj|GAA93500.1| hypothetical protein E5Q_00141 [Mixia osmundae IAM 14324]
          Length = 401

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 126/229 (55%), Gaps = 36/229 (15%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTD-----------------------LFFQ--RRYGC-- 75
           H A  T SD++A W + ++RW  D                       L  Q  R  G   
Sbjct: 121 HRANLTLSDRVADWAIGAIRWTFDAATGYAHFDAKKADELAKKRGATLSLQELREAGLAM 180

Query: 76  -------RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
                  R + LET+A VPG    +L H KSLR  E  GGWI  LL+E+ENER+HL +F+
Sbjct: 181 SPKLWMRRFIFLETIAGVPGSAAAILRHLKSLRTMERDGGWIHTLLQESENERIHLFSFL 240

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           E+ KP  + R +  A QGVF +A+ L Y+ISP+  HR VG LEE+A+ +YT  + E+  G
Sbjct: 241 EITKPGRFMRLMTMAAQGVFTSAFALAYVISPRICHRFVGKLEEQAVLTYTLAIDEIKAG 300

Query: 189 NIE--NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            +   +  AP IA +YWR+ P +T  D++  +RADEA HR +NH  +D+
Sbjct: 301 RLPEFDRKAPEIAINYWRMQPAATFLDMLYQIRADEATHRFINHSLADL 349


>gi|296418840|ref|XP_002839033.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635027|emb|CAZ83224.1| unnamed protein product [Tuber melanosporum]
          Length = 383

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 3/164 (1%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGM  GM+ H  SLRR +    WI+ LLEEA NER+HL+TF+   +P 
Sbjct: 144 ARFIFLESIAGVPGMAAGMIRHLNSLRRLKRDNAWIETLLEEAYNERLHLLTFLHYRQPG 203

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---E 191
            + R ++   QG+FFN +F+ YL+SP+  HR VGY+EEEA+ +YT  + +++ G I   E
Sbjct: 204 LFMRTMILGAQGIFFNLFFISYLVSPRTCHRFVGYIEEEAVITYTRAIADIENGRIPEWE 263

Query: 192 NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           N+ AP IA  Y+ L P++ + +++ V+RADEA HR+VNH  +++
Sbjct: 264 NLLAPDIAIKYFGLGPDANMLELLKVIRADEAKHREVNHTLANL 307


>gi|68464763|ref|XP_723459.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
 gi|46445493|gb|EAL04761.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
          Length = 241

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 117/182 (64%), Gaps = 8/182 (4%)

Query: 59  KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 118
           K  RW      + ++  R + LE+VA VPG V G L H  SLR       WI+ LL+EA 
Sbjct: 23  KGTRWEMT---EGKWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAY 79

Query: 119 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 178
           NERMHL+TF+++ KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y
Sbjct: 80  NERMHLLTFIKIGKPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTY 139

Query: 179 TEFLKELD-KGNI---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233
           +  L EL   G +   E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +
Sbjct: 140 SHLLDELAVPGKLPAFETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFA 199

Query: 234 DI 235
           ++
Sbjct: 200 NL 201


>gi|118384863|ref|XP_001025570.1| Alternative oxidase family protein [Tetrahymena thermophila]
 gi|89307337|gb|EAS05325.1| Alternative oxidase family protein [Tetrahymena thermophila SB210]
          Length = 301

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 126/230 (54%), Gaps = 24/230 (10%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYGCRAMMLETVAAV 86
           H  P  F D+ A + ++SLR+  D+                  +R +  R + LETVA V
Sbjct: 75  HLEPANFGDRFANFFIQSLRYGFDIMSGYKKVFPWQEKGAPLTEREWINRILFLETVAGV 134

Query: 87  PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 146
           PG V  M  H +SLR  +   GWI  LLEEAENERMHL+TF+EV KP +  R  V   Q 
Sbjct: 135 PGFVAAMHRHLRSLRSMKRDYGWIHTLLEEAENERMHLLTFLEVQKPTFLFRTGVILAQY 194

Query: 147 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE-----NVPAPAIATD 201
            +   + + Y   P+  HR+VGYLEEEA+ +YT  ++   K   E       PAP I+ D
Sbjct: 195 GYVALFSVLYFFYPRVCHRIVGYLEEEAVKTYTHSIETALKEGSEIHIWLTKPAPKISID 254

Query: 202 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 251
           YW+L PN+ L DV+  VR DE HHRDVNH  +D + Q    + +P P G+
Sbjct: 255 YWKLSPNACLLDVIYAVRKDEEHHRDVNHKLADDYSQK---KPNPFPPGH 301


>gi|344302079|gb|EGW32384.1| inducible alternative oxidase 2 [Spathaspora passalidarum NRRL
           Y-27907]
          Length = 342

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 5/169 (2%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPG V   + H  SLR  +    WI+ LL+EA NERMHL+TF+++ KP W
Sbjct: 138 RVIFLESIAGVPGFVASFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKLGKPSW 197

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK----GNIE 191
           + R++++A QGVF N +FL YL +P+F HR VGYLEEEA+ +YT  + EL+         
Sbjct: 198 FTRSIIYAGQGVFANIFFLCYLANPRFCHRFVGYLEEEAVSTYTHLVHELETPGKLTGFN 257

Query: 192 NVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           ++  P IA  YW  L  NS+ KD++L +RADEA HR+VNH  ++++ + 
Sbjct: 258 DMKIPEIAVQYWPELTENSSFKDLILRIRADEAKHREVNHTLANLNQKS 306


>gi|118384865|ref|XP_001025571.1| Alternative oxidase family protein [Tetrahymena thermophila]
 gi|89307338|gb|EAS05326.1| Alternative oxidase family protein [Tetrahymena thermophila SB210]
          Length = 322

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 21/224 (9%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF--------FQRRYG--------CRAMMLETVAAV 86
           H  P    D+++ + ++S+R   D+         +Q++ G         R + LETVA V
Sbjct: 92  HFKPKNIGDRLSHYLIQSMRLGFDVMSGYKKVFPWQQKSGELTERGWLNRMVFLETVAGV 151

Query: 87  PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 146
           PG V  M  H +SLRR E   GWI  LLEEAENERMHL+TF++V KP    R  V + Q 
Sbjct: 152 PGFVAAMHRHLRSLRRMERDYGWIHVLLEEAENERMHLLTFLKVQKPTLLFRLGVISAQF 211

Query: 147 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATD 201
            +   + L Y   P+  HR+VGYLEEEA+ +YT  ++ +++ N      +   AP IA D
Sbjct: 212 NYVLMFGLLYQFFPRVCHRIVGYLEEEAVKTYTHCIEVINQENSSISHWKTKKAPQIAID 271

Query: 202 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 245
           YWRLP N+T++DV+  +R DE HHRDVNH  +  + Q + L ++
Sbjct: 272 YWRLPENATMEDVIYAIRKDEEHHRDVNHDLASDYSQTKVLADT 315


>gi|224012252|ref|XP_002294779.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969799|gb|EED88139.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 227

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 122/218 (55%), Gaps = 16/218 (7%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVA 84
           E +L + L  H  P  F DK A   VK+ R+  D+      G         RA+ LETVA
Sbjct: 11  EEELDVKLT-HVPPEKFVDKAAFVAVKAFRFGFDIGTGWNRGAITTDKILNRAIFLETVA 69

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
           A+PGMV  ++ H +SLR     GG +   LEEA NERMHL+TF+ +  P +  RA V   
Sbjct: 70  AIPGMVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRMKDPGYLFRATVIGG 129

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL-------DKGNIENVPAPA 197
           Q  F +A+   Y+ISP F HR VGY+EEEA  +YT+ +K +       D GN     AP 
Sbjct: 130 QFAFGSAFLTMYMISPAFCHRFVGYIEEEACATYTKIIKAIEEAPEGTDLGNWRTEEAPK 189

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           IA  YW L  + ++ D++L VRADEA HRDVNH  S +
Sbjct: 190 IAKGYWHLGEHGSVLDLMLAVRADEAEHRDVNHAVSGV 227


>gi|448091410|ref|XP_004197324.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|448095975|ref|XP_004198355.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359378746|emb|CCE85005.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359379777|emb|CCE83974.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
          Length = 341

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 27/220 (12%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYG-------CRAMM 79
           H  P TF DK+    + ++R   D                 F   RY         R + 
Sbjct: 82  HREPVTFGDKVTYNMILAIRRTFDFVTGYKKPQTPEEKEHAFKGTRYEMTESKWMTRVIF 141

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE+VA VPGMV   + H  SLR       WI+ LL+EA NERMHL+TFM++ KP W+ + 
Sbjct: 142 LESVAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFMKLGKPSWFTKL 201

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 196
           +++A QGVF N +F  YL++P++ HR VGYLEEEA+ +YT  L EL+ G +   +++  P
Sbjct: 202 IIYAGQGVFCNMFFFSYLLNPRYCHRFVGYLEEEAVSTYTHLLDELEAGKLPKFDHIELP 261

Query: 197 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            I+  YW  L   S+  D+V +VRADEA HR+VNH  +++
Sbjct: 262 EISWHYWGDLNEKSSFYDLVSLVRADEAKHREVNHTLANL 301


>gi|343429594|emb|CBQ73167.1| related to alternative oxidase precursor, mitochondrial
           [Sporisorium reilianum SRZ2]
          Length = 409

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 137/244 (56%), Gaps = 22/244 (9%)

Query: 12  KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQR 71
           K+ KDD SE                 +  + H A T  SD  A+ T+K +R     F   
Sbjct: 147 KLAKDDASE---------------AHVASEAHVAKTVSSDDGAM-TLKEMRAKGLCFGPD 190

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
            +  R + LET+A VPGMV     H +SLR  +   GWI  +LE+AENERMHL+TFM VA
Sbjct: 191 GWLNRIIFLETIAGVPGMVAASCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMAVA 250

Query: 132 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI- 190
           KP W  R      QGVF+N +F+ YL +PK AHR VG LEEEA+ +Y+  L++L +G + 
Sbjct: 251 KPGWIARTFALLAQGVFYNFFFVFYLTAPKVAHRFVGVLEEEAVLTYSYILEDLKEGRLP 310

Query: 191 --ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ---LRES 245
             ENVPAP IA  YW+L   + L DV+  VRADEA HR +NH  + +         LRE 
Sbjct: 311 EWENVPAPEIAKQYWQLGDQAMLVDVIRAVRADEATHRHINHTFASLESTDPNPFALREP 370

Query: 246 PAPL 249
           PA +
Sbjct: 371 PAKM 374


>gi|62241309|dbj|BAD93712.1| alternative oxidase 1a [Candida maltosa]
          Length = 371

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 109/166 (65%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE VA +PG V G++ H  SLR       WI+ L +EA NERMHL+TF+++ KP 
Sbjct: 166 TRCIFLEAVAGIPGSVAGLIRHLHSLRMLTRDKAWIQTLNDEAYNERMHLLTFIKIGKPS 225

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK----GNI 190
           W+ R +++  QGVF N +F+ YL++PK+ HR VGYLEEEA+ +YT  L EL+      + 
Sbjct: 226 WFTRTIIYVGQGVFTNLFFMVYLMNPKYCHRFVGYLEEEAVRTYTHLLAELNVPGKLPDF 285

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           E +  P IA  YW  L P S+ KD++L +RADE+ HR++NH  +++
Sbjct: 286 EKMVIPTIAVQYWDELSPESSFKDLILRIRADESKHREINHTFANL 331


>gi|33087085|gb|AAP92756.1| alternative oxidase 1c [Solanum lycopersicum]
          Length = 87

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 81/87 (93%)

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+KPKWYER 
Sbjct: 1   LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSKPKWYERG 60

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRM 166
           LV  VQG+FFN YF+ Y++SPK AHR+
Sbjct: 61  LVLMVQGIFFNVYFMTYILSPKLAHRI 87


>gi|219114258|ref|XP_002176300.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402703|gb|EEC42692.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 218

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 16/213 (7%)

Query: 33  EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVA 84
           +ADL I+L  H  P    D++A   VK++RW  D      Y          R + LET+A
Sbjct: 7   QADLDIELT-HTKPEGIRDRLAYNAVKAVRWSFDKMTGWNYKSITQDMVLQRVIYLETIA 65

Query: 85  AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
           AVPGMV  ++ H +SLR F+  GG ++  L+EA NERMHL++F+ +  P    RA V   
Sbjct: 66  AVPGMVAAIVRHFRSLRSFQRDGGMMQMFLDEANNERMHLLSFVRMKDPSMLFRAAVIGG 125

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN-------VPAPA 197
           Q  F +A+ L Y+ISPKF HR VGY+EEEA  +YT+ +K ++    +N         AP+
Sbjct: 126 QAGFGSAFLLLYVISPKFCHRFVGYVEEEACTTYTKIIKAIEDAPEDNELAAWRTQLAPS 185

Query: 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 230
           IA  YW+L    T+ +++  VRADEA HRDVNH
Sbjct: 186 IARSYWKLGEYGTVLELMYAVRADEAEHRDVNH 218


>gi|145536776|ref|XP_001454110.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421854|emb|CAK86713.1| unnamed protein product [Paramecium tetraurelia]
          Length = 271

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 22/228 (9%)

Query: 43  HHAPTTFSDKMALWTVKSLR--------------WPTDLFFQRRYGCRAMMLETVAAVPG 88
           H  P TF D+ A   ++S+R              W  ++  ++++  R + LETVA VPG
Sbjct: 47  HKLPLTFGDRFAHLFIQSMRVGFDVLSGYRKVFPWQDNIISEKKWINRVLFLETVAGVPG 106

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
            V GM  H +SLR  +   GWI  LLEEAENER+HL+TF+ + KP    R  V   Q  +
Sbjct: 107 FVAGMHRHLRSLRGMKRDLGWIHTLLEEAENERVHLLTFLTIKKPSLIFRTGVILAQLWY 166

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI----ENVPAPAIATDYW 203
              Y + Y+I P+  HR+VGYLEEEA+ +YT  ++E++ +G+     +  PA   + +YW
Sbjct: 167 VALYSVAYMIQPRVCHRIVGYLEEEAVKTYTHMIEEIEIEGSSIHSWKTRPAHQNSIEYW 226

Query: 204 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 251
           +L  N+TL DVV  +R DE HH++VNH  +D + Q     E+P P GY
Sbjct: 227 KLSENATLLDVVKAIRKDEEHHKEVNHKFADDYTQQ---SENPFPPGY 271


>gi|241949569|ref|XP_002417507.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
 gi|223640845|emb|CAX45160.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 366

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ KP 
Sbjct: 161 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 220

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL----DKGNI 190
           W  R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L E+       + 
Sbjct: 221 WLTRSIIYIGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDEMAIPGKLPSF 280

Query: 191 ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           E +  P +A  YW  L   S+ KD++L +RADEA HR+VNH  +++
Sbjct: 281 ETMKIPEVAIQYWPELTSKSSFKDLILRIRADEAKHREVNHTFANL 326


>gi|354548354|emb|CCE45090.1| hypothetical protein CPAR2_700940 [Candida parapsilosis]
          Length = 370

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 27/220 (12%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------------FFQRRYGCRAMML 80
           H  P TF DK+A   +K  R   D                         + ++  R + L
Sbjct: 111 HREPRTFGDKIAYHGIKFCRGCFDFVTGYKVPKEGESLDKYKGTRYEMTEGKWLTRVIFL 170

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           E+VA VPG V   L    SLR       WI+ L +EA NERMHL+TFM++ +P W+ + +
Sbjct: 171 ESVAGVPGSVASFLRTLHSLRLLRRDKAWIETLQDEAYNERMHLLTFMKIGQPSWFTKTI 230

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IENVPAP 196
           ++  QGVF N +F  YL +PK+ HR VGYLEEEA+ +YT  L E++  N     + +  P
Sbjct: 231 IYLGQGVFTNLFFFCYLANPKYCHRFVGYLEEEAVRTYTHLLDEMEDPNKLNGFQKIQIP 290

Query: 197 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            IA +YW  L  +S+ KD++L +RADE+ HR+VNH  +++
Sbjct: 291 TIAVNYWSSLSKDSSFKDLILRIRADESKHREVNHTLANL 330


>gi|50551827|ref|XP_503388.1| YALI0E00814p [Yarrowia lipolytica]
 gi|51701283|sp|Q8J0I8.1|AOX_YARLI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|27263058|emb|CAD21442.1| alternative oxidase [Yarrowia lipolytica]
 gi|49649257|emb|CAG78967.1| YALI0E00814p [Yarrowia lipolytica CLIB122]
          Length = 353

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 124/216 (57%), Gaps = 21/216 (9%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETV 83
            H    TFSD++AL  +  +R   DL                     R++  R + LE++
Sbjct: 100 NHRKTETFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESI 159

Query: 84  AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 143
           A VPGMV GM+ H  SLR       WI++L+EEA NERMHL+TF+++ KP    R  +  
Sbjct: 160 AGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLI 219

Query: 144 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA---PAIAT 200
            Q +F+N +F+ YLISP   HR VGYLEEEA+ +YT  L+++D G +  + +   P IA 
Sbjct: 220 GQIIFYNLFFISYLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIAR 279

Query: 201 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 236
            YW +  + T++D++  VRADEA H +VNH   ++H
Sbjct: 280 TYWHMEDDCTMRDLIQYVRADEAKHCEVNHTFGNLH 315


>gi|260948572|ref|XP_002618583.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
 gi|238848455|gb|EEQ37919.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
          Length = 332

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 113/181 (62%), Gaps = 7/181 (3%)

Query: 59  KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 118
           K  RW      + ++  R + LE+VA VPGM    L H  SLR  +    WI+ LL+EA 
Sbjct: 115 KGTRWEMT---ESKWLTRVIFLESVAGVPGMTAAFLRHLHSLRLMKRDKAWIETLLDEAY 171

Query: 119 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 178
           NERMHL+TFM++ +P W+ +  VFA QGVF N +FL YL+SP+  HR VGYLEEEA+ +Y
Sbjct: 172 NERMHLLTFMKIGRPSWFTKVFVFAGQGVFCNLFFLMYLLSPRACHRFVGYLEEEAVSTY 231

Query: 179 TEFLKELDKGNI---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           T  ++EL+   +   + +  P +A  YW  L   ST  D++  +RADE+ HR+VNH  ++
Sbjct: 232 THLIEELEAKRLPKFDGITVPEVAQLYWPELNEKSTFLDLIQRIRADESKHREVNHTLAN 291

Query: 235 I 235
           +
Sbjct: 292 L 292


>gi|33327042|gb|AAQ08895.1| SHAM-sensitive alternative terminal oxidase isozyme I [Yarrowia
           lipolytica]
          Length = 341

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 21/210 (10%)

Query: 48  TFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVAAVPGM 89
           TFSD++AL  +  +R   DL                     R++  R + LE++A VPGM
Sbjct: 94  TFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGM 153

Query: 90  VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 149
           V GM+ H  SLR       WI++L+EEA NERMHL+TF+++ KP    R  +   Q +F+
Sbjct: 154 VAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFY 213

Query: 150 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA---PAIATDYWRLP 206
           N +F+ YLISP   HR VGYLEEEA+ +YT  L+++D G +  + +   P IA  YW + 
Sbjct: 214 NLFFISYLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIARTYWHME 273

Query: 207 PNSTLKDVVLVVRADEAHHRDVNHYASDIH 236
            + T++D++  VRADEA H +VNH   ++H
Sbjct: 274 DDCTMRDLIQYVRADEAKHCEVNHTFGNLH 303


>gi|3023301|sp|Q00912.1|AOX_HANAN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|218523|dbj|BAA00641.1| unnamed protein product [Pichia anomala]
 gi|6978940|dbj|BAA90763.1| alternative oxidase [Pichia anomala]
 gi|445371|prf||1909185A alternative oxidase
          Length = 342

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 27/220 (12%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL-----------------------FFQRRYGCRAMM 79
           H  P T  DK+A   VK  R   D                          + ++  R + 
Sbjct: 81  HREPKTIGDKIADRGVKFCRASFDFVTGYKKPKDVNGMLKSWEGTRYEMTEEKWLTRCIF 140

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 139
           LE+VA VPGMV   + H  SLR  +    WI+ LL+EA NERMHL+TF+++  P W+ R 
Sbjct: 141 LESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKIGNPSWFTRF 200

Query: 140 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 196
           +++  QGVF N +FL YLI P++ HR VGYLEEEA+ +YT  +K++D   +   ++V  P
Sbjct: 201 IIYMGQGVFANLFFLVYLIKPRYCHRFVGYLEEEAVSTYTHLIKDIDSKRLPKFDDVNLP 260

Query: 197 AIATDYWR-LPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            I+  YW  L   ST +D++  +RADE+ HR+VNH  +++
Sbjct: 261 EISWLYWTDLNEKSTFRDLIQRIRADESKHREVNHTLANL 300


>gi|354548355|emb|CCE45091.1| hypothetical protein CPAR2_700950 [Candida parapsilosis]
          Length = 370

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 27/220 (12%)

Query: 43  HHAPTTFSDKMAL---------------WTVKSLRWPTDLFFQRRYG-------CRAMML 80
           H  P T  DK+A                + V     P D +   RY         R + L
Sbjct: 111 HRKPETIGDKIAYHGTMFCRACFDFVTGYKVPKEGEPLDKYVGTRYEMTEGKWMTRVIFL 170

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 140
           E++A VPG V   L    SLR  +    WI+ L +EA NERMHL+TF+++ +P W+ + +
Sbjct: 171 ESIAGVPGSVASFLRTLHSLRLLKRDKAWIETLQDEAYNERMHLLTFIKIGQPSWFTKTI 230

Query: 141 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IENVPAP 196
           ++  QGVF N +F  YL +PK+ HR VGYLEEEA+ +YT  L ELD  N     +++  P
Sbjct: 231 IYLGQGVFTNLFFFCYLTNPKYCHRFVGYLEEEAVRTYTHLLDELDDPNKLKDFQSMLIP 290

Query: 197 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            IA +YW  L   S+ KD++L +RADE+ HR+VNH  +++
Sbjct: 291 TIAVNYWPSLSEESSFKDLILRIRADESKHREVNHTLANL 330


>gi|448535195|ref|XP_003870925.1| Aox1 alternative oxidase [Candida orthopsilosis Co 90-125]
 gi|380355281|emb|CCG24798.1| Aox1 alternative oxidase [Candida orthopsilosis]
          Length = 370

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 5/169 (2%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPG V   L    SLR  +    WI+ L +EA NERMHL+TF+++ +P W
Sbjct: 166 RVIFLESIAGVPGSVASFLRTLHSLRLLKRDKAWIETLQDEAYNERMHLLTFIKIGQPSW 225

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IE 191
           + + +++  QGVF N +F  YL +PK+ HR VGYLEEEA+ +YT  L EL+  N     +
Sbjct: 226 FTKTIIYLGQGVFTNLFFFCYLANPKYCHRFVGYLEEEAVRTYTHLLDELEDPNKLKDFQ 285

Query: 192 NVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
           N+  P IA +YW  L   S+ KD++L +RADE+ HR+VNH  +++   G
Sbjct: 286 NMLIPTIAVNYWPSLTEESSFKDLILRIRADESKHREVNHTLANLKQDG 334


>gi|14599474|gb|AAK70935.1| alternative oxidase 1a [Mangifera indica]
          Length = 78

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 77/78 (98%)

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGGMLLHCKSLR+FEHSGGWIKALLEEAENERMHLMTFMEVA+P+WYERALVF VQGVF
Sbjct: 1   MVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERALVFTVQGVF 60

Query: 149 FNAYFLGYLISPKFAHRM 166
           FNAYFLGYLISPKFAHRM
Sbjct: 61  FNAYFLGYLISPKFAHRM 78


>gi|443894326|dbj|GAC71674.1| hypothetical protein PANT_5c00016 [Pseudozyma antarctica T-34]
          Length = 468

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 115/178 (64%), Gaps = 6/178 (3%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LET+A VPGMV     H +SLR  +   GWI  +LE+AENERMHL+TFME+AKP W
Sbjct: 254 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMELAKPGW 313

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
             R      QGVF+N +F+ YL+SP+ AHR VG LEEEA+ +Y+  L +L++G +   EN
Sbjct: 314 IARTFALLAQGVFYNFFFVFYLVSPRVAHRFVGVLEEEAVMTYSFILDDLNEGRLPEWEN 373

Query: 193 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ---LRESPA 247
           V AP IA  YW+L  ++ L DV+  VRADEA HR +NH  + +         LRE PA
Sbjct: 374 VRAPEIARQYWQLSDDAMLVDVIRAVRADEATHRHINHTFASLESTDPNPFALREPPA 431


>gi|256674265|gb|ACV04930.1| mitochondrial alternative oxidase [Blastocystis sp. Nand II]
          Length = 304

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 3/194 (1%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 100
           K+H  P   SD++A   V +L    + +F+  Y  RA+ LE+VA++PG+V   L H + L
Sbjct: 73  KRH--PKGVSDRVASGIVNALFKIGNAYFRENYILRAVFLESVASIPGLVCSNLHHLRCL 130

Query: 101 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 160
           RR +    WIK L++EAENERMHL+      K    ++  +   Q  F   +   ++ +P
Sbjct: 131 RRLQ-PDSWIKPLVDEAENERMHLLAVRTYTKLTAVQKLFIRITQFSFVTLFSFLFVFAP 189

Query: 161 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 220
           + +HR+VG+LEE A+ SYTE ++ +D   +EN PA  I  DYW LP ++TL+D +LV+RA
Sbjct: 190 RTSHRLVGFLEEHAVDSYTEMIRRIDSNTLENRPATQITKDYWGLPEDATLRDALLVIRA 249

Query: 221 DEAHHRDVNHYASD 234
           DEA HR VNH   D
Sbjct: 250 DEADHRLVNHSLGD 263


>gi|403355071|gb|EJY77103.1| hypothetical protein OXYTRI_01266 [Oxytricha trifallax]
          Length = 275

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLF----FQRRYGC----RAMMLETVAAVPGMVGGML 94
           H  P  F+DK AL TV  +    +       Q+R       R + LE +  VPG+V G  
Sbjct: 41  HREPQNFTDKFALRTVGLMEVIMNALTGKDHQKRTTTQWYNRFIFLEALGIVPGLVAGTA 100

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            H +SL   +     I  LLEEAENER HL  FM + KP    +  + A Q + +N +F+
Sbjct: 101 KHLRSLSSMKPDRAMIHLLLEEAENERTHLFLFMNLRKPGMLIKFGIAAKQFLLWNIFFI 160

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN---IENVPAPAIATDYWRLPPNSTL 211
            YLISP + HR VGY+EEE+I +YT FLK++D GN   ++N+ AP +A DY+ LP ++  
Sbjct: 161 SYLISPYYVHRFVGYMEEESIFNYTMFLKQIDSGNLKELQNMEAPQLAKDYYNLPADAKF 220

Query: 212 KDVVLVVRADEAHHRDVNHYASDI 235
           +D+VL +RADE+ HR+ NHY  ++
Sbjct: 221 RDMVLSIRADESLHREFNHYFCEL 244


>gi|146412117|ref|XP_001482030.1| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 27/227 (11%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDL-----------------------FFQRRYGCRAM 78
           +H  P   SD +A   V   RW  D+                         + ++  R +
Sbjct: 88  EHREPRNVSDTIAFRGVNFFRWCFDMVTGYKKPRNDHDLETGFKGTRWEMTENKWLTRII 147

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LE++A VPGMV   L H  SLR  +    WI+ LL+EA NERMHL+TF+++ +P W+ R
Sbjct: 148 FLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPSWFTR 207

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 195
            +++  QGVF NA+FL YL+ PK+ HR VGY+EEEA+ +Y+  + ELD   +   +++  
Sbjct: 208 FIIYVGQGVFCNAFFLCYLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKLPKFDHMRV 267

Query: 196 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           P +A  YW  L  NST +D++L VRADEA HR+VNH  +++    R 
Sbjct: 268 PPVAIQYWTELDENSTFRDLILRVRADEAKHREVNHTLANLDLTDRN 314


>gi|190349103|gb|EDK41695.2| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 27/227 (11%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDL-----------------------FFQRRYGCRAM 78
           +H  P   SD +A   V   RW  D+                         + ++  R +
Sbjct: 88  EHREPRNVSDTIAFRGVNFFRWCFDMVTGYKKPRNDHDLETGFKGTRWEMTENKWLTRII 147

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 138
            LE++A VPGMV   L H  SLR  +    WI+ LL+EA NERMHL+TF+++ +P W+ R
Sbjct: 148 FLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPSWFTR 207

Query: 139 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 195
            +++  QGVF NA+FL YL+ PK+ HR VGY+EEEA+ +Y+  + ELD   +   +++  
Sbjct: 208 FIIYVGQGVFCNAFFLCYLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKLPKFDHMRV 267

Query: 196 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           P +A  YW  L  NST +D++L VRADEA HR+VNH  +++    R 
Sbjct: 268 PPVAIQYWTELDENSTFRDLILRVRADEAKHREVNHTLANLDSTDRN 314


>gi|302411548|ref|XP_003003607.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
 gi|261357512|gb|EEY19940.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
          Length = 334

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 128/247 (51%), Gaps = 46/247 (18%)

Query: 28  PWEAY-EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 67
           P E Y EAD+   +  H AP T+ D  A   V+  RW  D                    
Sbjct: 84  PHEGYSEADMLAVVPGHRAPETWGDWAAWKFVRVARWTMDRATGLKPEQQVDKKNPTTAV 143

Query: 68  -----FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 122
                  + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERM
Sbjct: 144 VANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESYNERM 203

Query: 123 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 182
           HL+TFM++++P W+ + ++   QGVFFN  FL YL+SPK  HR VGYLEEEA+H+Y+  +
Sbjct: 204 HLLTFMKMSEPGWFMKVMLIGAQGVFFNGMFLSYLVSPKITHRFVGYLEEEAVHTYSRCI 263

Query: 183 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 242
           +E+++G +     P +    W+                 +A HR VNH  S+++      
Sbjct: 264 REIEEGQLPKWSDPNLTFPTWQC----------------KAVHRGVNHTLSNLNQN---- 303

Query: 243 RESPAPL 249
            E P P 
Sbjct: 304 -EDPNPF 309


>gi|260794312|ref|XP_002592153.1| hypothetical protein BRAFLDRAFT_124076 [Branchiostoma floridae]
 gi|229277368|gb|EEN48164.1| hypothetical protein BRAFLDRAFT_124076 [Branchiostoma floridae]
          Length = 403

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 132/268 (49%), Gaps = 49/268 (18%)

Query: 15  KDDGSEWKWNCFRP-WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRY 73
           KDDG+  +++   P W   E +  +    H  P +F+DK+A  +VK +RW  DLF   +Y
Sbjct: 126 KDDGTMGQYSLPHPIWTEEEVNKVV--ITHTPPQSFTDKLAYGSVKFMRWNFDLFSGFKY 183

Query: 74  GCRA--------MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           G R         + LETVA VPGMV  M  H  SLRR +   GWI  LLEEAENERMHLM
Sbjct: 184 GKRTERKWLQRIIFLETVAGVPGMVAAMTRHLHSLRRLKRDYGWIHTLLEEAENERMHLM 243

Query: 126 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR-------------------- 165
           T +++  P    R  V   QG F   +   YL+SP+F HR                    
Sbjct: 244 TALQLRNPSALFRWCVVFAQGTFVTLFSAAYLVSPRFCHRFAGPGSIPGVGTCARQFTTQ 303

Query: 166 -------------MVGYLEEEAIHSYTEF--LKELDKGNI---ENVPAPAIATDYWRLPP 207
                        MV  L     H    F  + + D G +    ++ AP +A  YW LP 
Sbjct: 304 RHHHYAKRTGPFGMVRCLNPTVTHLLGIFRGMGDFDSGRLPLWSDMEAPPLAKRYWSLPH 363

Query: 208 NSTLKDVVLVVRADEAHHRDVNHYASDI 235
           ++ ++DV+L +RADEAHHR VNH  SD+
Sbjct: 364 DAMMRDVILAIRADEAHHRLVNHTLSDL 391


>gi|71016790|ref|XP_758921.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
 gi|46098452|gb|EAK83685.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
          Length = 448

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 7/181 (3%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-KPK 134
           R + LE++A VPGMV     H +SLR      GWI  +LE+AENERMHL+  + ++ KP 
Sbjct: 233 RMIFLESIAGVPGMVAATCRHLQSLRLMRRDKGWIHTMLEDAENERMHLLVALHLSGKPG 292

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---E 191
              R  V   QGVF+N +F+ YL+SP+ AHR VG LEEEA+ +Y+  L++L +G +   E
Sbjct: 293 LIARTFVLLAQGVFYNFFFIFYLLSPRVAHRFVGVLEEEAVLTYSLILEDLKEGRLPEWE 352

Query: 192 NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ---LRESPAP 248
           +VPAP IA  YW+L   + L DV+  +RADEA HR +NH  + ++        LRE PA 
Sbjct: 353 DVPAPEIAKQYWQLGDEAMLVDVIRAIRADEATHRHINHTFASLNSDDPNPFALREPPAK 412

Query: 249 L 249
           +
Sbjct: 413 M 413


>gi|224012000|ref|XP_002294653.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969673|gb|EED88013.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 264

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 117/214 (54%), Gaps = 16/214 (7%)

Query: 38  IDLKKHHA-PTTFSDKMALWTVKSLR--------WPTDLFFQRRYGCRAMMLETVAAVPG 88
           +D+K  H  P +  D++AL+ VK  R        W        +   RA+ LETVAA+PG
Sbjct: 14  LDIKMTHVEPESALDRLALFAVKVTRFGFDQATGWNRGSITTDKVLNRAIFLETVAAIPG 73

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MV  ++ H +SLR     GG +   LEEA NERMHL+TF+ +  P +  R  V   Q  F
Sbjct: 74  MVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRMKDPGYLFRGAVVGSQFAF 133

Query: 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL-------DKGNIENVPAPAIATD 201
            +A+ + Y+ISP F HR VGY+EEEA  +YT+ +K +       D        AP IA  
Sbjct: 134 GSAFLVLYMISPAFCHRFVGYIEEEACATYTKIIKAIEEAPEGSDLAKWRTEEAPKIAKG 193

Query: 202 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
           YW L    T+ DV+  VRADEA HRDVNH  S +
Sbjct: 194 YWHLGEEGTVLDVMRAVRADEAEHRDVNHAVSGV 227


>gi|300120685|emb|CBK20239.2| Alternative oxydase (AOX) [Blastocystis hominis]
          Length = 302

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 116/186 (62%), Gaps = 1/186 (0%)

Query: 49  FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 108
            SD++A   V  L +  +L+F+  Y  RA+ LE+VA+VPG+V   L H + LRR +    
Sbjct: 79  ISDRIAKGIVDMLFFCGNLYFRDNYIRRAIFLESVASVPGLVCSSLHHLRCLRRLQ-PNE 137

Query: 109 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 168
           WIK L++EAENERMHL+           ++  +  +Q  F + +   ++ +P+ +HR+VG
Sbjct: 138 WIKPLVDEAENERMHLLAVRTYTNLTIVQKLFIRILQVSFVSLFSFMFVFTPRTSHRLVG 197

Query: 169 YLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228
           +LEE A+ SYTE +K +D G ++N  A  I  DYW LP ++TL+D +LV+RADEA HR V
Sbjct: 198 FLEEHAVDSYTEMIKRIDTGKLKNERATQITKDYWGLPEDATLRDALLVIRADEADHRLV 257

Query: 229 NHYASD 234
           NH   D
Sbjct: 258 NHTLGD 263


>gi|294872126|ref|XP_002766164.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239866823|gb|EEQ98881.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 327

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 116/199 (58%), Gaps = 10/199 (5%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLF-----FQ---RRYGCRAMMLETVAAVPGMVGGM 93
           +H  P T  D +A   V   R   D F     F+   + Y  R ++LET+A +PGMV  M
Sbjct: 89  EHLKPKTIRDHLAHSAVWLCRTGYDFFSGYDFFKHDYKMYARRLIVLETIAGIPGMVAAM 148

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
             H +SLRR E   GWI  L+EEAE+ERMHL+    +    W+ R+ + A QG FF  Y 
Sbjct: 149 NRHLRSLRRMERDNGWIPTLIEEAEDERMHLLISQGLVSHGWFLRSFLTAAQGAFFLFYA 208

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NVPAPAIATDYWRLPPNSTL 211
             Y +SP+F HR VGYLEEEA  +YT  +++++ G +   +  AP  A  Y+ LP ++TL
Sbjct: 209 GAYSVSPRFCHRFVGYLEEEAFKTYTAIVEDVENGQVPEFDRSAPFYAKAYYCLPEDATL 268

Query: 212 KDVVLVVRADEAHHRDVNH 230
            D ++ +RADE  HRDVNH
Sbjct: 269 LDTLICMRADEDRHRDVNH 287


>gi|385304059|gb|EIF48094.1| alternative oxidase mitochondrial precursor [Dekkera bruxellensis
           AWRI1499]
          Length = 374

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 8/178 (4%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R ++LE++A +PG V G L H +S+R       +I+ LL+EA NERMHL+TFM++ KP  
Sbjct: 171 RFIVLESIAGIPGSVAGFLRHLQSIRLMRRDKAFIETLLDEAYNERMHLLTFMKLGKPGR 230

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIEN 192
           + R +++  QG+F N +FL Y+I PK  HR VGYLEEEA+ +YT  L+++  G    + +
Sbjct: 231 FARLMLWFGQGIFANLFFLTYIIRPKICHRFVGYLEEEAVLTYTRCLQDMRMGLNPQLYH 290

Query: 193 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 250
              P IA DYW L    T  D++L +RADEA HR+VNH  +++     +LR+   P  
Sbjct: 291 TGIPQIAKDYWHLTNKDTFYDMILYIRADEAKHREVNHTFANL-----KLRQDRNPFA 343


>gi|145548257|ref|XP_001459809.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427636|emb|CAK92412.1| unnamed protein product [Paramecium tetraurelia]
          Length = 266

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 127/231 (54%), Gaps = 28/231 (12%)

Query: 42  KHHAPTTFSDKMALWTVKSLR--------------WPTDLFFQRRYGCRAMMLETVAAVP 87
           +H    TF D  A + ++S+R              + ++L  ++++  R + LETVA VP
Sbjct: 41  EHKTAITFGDHFAYYFIQSMRLGFDVMSGYKKTLPFQSELVSEKKWINRVLFLETVAGVP 100

Query: 88  GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 147
           G V GM  H +SLR  +   GWI  LLEEAENER+HL+TF+ + KP    R  V   Q  
Sbjct: 101 GFVAGMHRHLRSLRGMKRDQGWIHTLLEEAENERIHLLTFLNIKKPSLIFRTGVVLAQAW 160

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP--------APAIA 199
           +   + + Y+  P+  HR+VGYLEEEA+ +YT  + E+++   E  P        A   +
Sbjct: 161 YVALFGVAYIFWPRVCHRIVGYLEEEAVKTYTHMIHEIER---EGSPIHSWTTRKANQNS 217

Query: 200 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 250
            +YW L  N+TL DVV  +R DE HH+DVNHY +D + Q    + +P P G
Sbjct: 218 IEYWGLDENATLLDVVKAIRKDEEHHKDVNHYFADDYTQS---KPNPFPPG 265


>gi|397914094|gb|AFO70098.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 95/133 (71%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V+ ++W    +   +   R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+
Sbjct: 74  VQCVQWIMGTWANMKKLIRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEES 133

Query: 118 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
            NERMHL+TFM++ +P W+ + ++   QGVFFN+ F+ YL+SPK  HR VGYLEEEA+H+
Sbjct: 134 YNERMHLLTFMKMCEPGWFMKMMIIGAQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHT 193

Query: 178 YTEFLKELDKGNI 190
           YT  +KE++ GN+
Sbjct: 194 YTRCIKEIEDGNL 206


>gi|403357544|gb|EJY78400.1| Alternative oxidase isoform A [Oxytricha trifallax]
          Length = 275

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 11/205 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFF----QRR----YGCRAMMLETVAAVPGMVGGML 94
           H  P  F DK AL  +  LR   D       Q+R    +  R ++LE++A +PG+V G  
Sbjct: 41  HREPHNFRDKFALRWIGGLRLFVDALTGKDAQKRDAKTWFNRMVLLESIAPIPGLVVGTA 100

Query: 95  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
            + K+L+  +     +  +LEE+ENER HL  ++   KPK+  R  +   Q  F+N +FL
Sbjct: 101 KYFKNLKDMKTDRALVHFMLEESENERTHLYLWLNYQKPKFISRMGIAFKQIAFWNVFFL 160

Query: 155 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN---IENVPAPAIATDYWRLPPNSTL 211
            Y+ SP   HR +GYLEEEAI++YT FLK++D GN   ++N PAP +A DY+ LP ++  
Sbjct: 161 TYIFSPYVCHRFMGYLEEEAIYNYTMFLKQIDNGNLKELQNEPAPKLAKDYYNLPEDAKF 220

Query: 212 KDVVLVVRADEAHHRDVNHYASDIH 236
           +D++L +RADE  HR+ NHY  ++ 
Sbjct: 221 RDMLLALRADEVVHREFNHYFCELQ 245


>gi|397914084|gb|AFO70093.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 95/133 (71%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V+ ++W    +   +   R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+
Sbjct: 74  VQCVQWIMGTWANIKKLIRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEES 133

Query: 118 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
            NERMHL+TFM++ +P W+ + ++   QGVFFN+ F+ YL+SPK  HR VGYLEEEA+H+
Sbjct: 134 YNERMHLLTFMKMCEPGWFMKMMIIGAQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHT 193

Query: 178 YTEFLKELDKGNI 190
           YT  +KE++ GN+
Sbjct: 194 YTRCIKEIEDGNL 206


>gi|397914080|gb|AFO70091.1| alternative oxidase, partial [Fusarium solani]
          Length = 236

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 88/115 (76%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 90  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 149

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 190
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+
Sbjct: 150 FMKTMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNL 204


>gi|397914078|gb|AFO70090.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 88/115 (76%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 91  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 150

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 190
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+
Sbjct: 151 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNL 205


>gi|397914082|gb|AFO70092.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 88/115 (76%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 91  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 150

Query: 136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 190
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+
Sbjct: 151 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNL 205


>gi|2662190|dbj|BAA23725.1| alternative oxidase [Chlamydomonas sp. W80]
          Length = 155

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 110 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 169
           ++ALLEEAENERMHL+TF+E+ +P W  RA V   QG +FN +F+ YLISPKF H +VGY
Sbjct: 5   LQALLEEAENERMHLLTFLEMRQPSWMFRAAVLLAQGAYFNMFFISYLISPKFCHAVVGY 64

Query: 170 LEEEAIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228
           LEEEA+ +YT  L ++D G++ ++ PAP     YW+L P++T++D++L VRADEA H  V
Sbjct: 65  LEEEAVKTYTHLLHDIDAGHVWKDKPAPKTGIAYWKLSPDATMRDLILAVRADEASHSLV 124

Query: 229 NHYASDI 235
           NH  S+I
Sbjct: 125 NHTLSEI 131


>gi|340502184|gb|EGR28896.1| hypothetical protein IMG5_166890 [Ichthyophthirius multifiliis]
          Length = 266

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 21/213 (9%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYGCRAMMLETVAAV 86
           H  P+T  D  A   ++SLR   D+                  ++++  R + LETVA V
Sbjct: 41  HLQPSTIGDSFANIFIQSLRLSFDIMSGYKQIFPWQDKTKPISEKKWLNRMLFLETVAGV 100

Query: 87  PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 146
           PG V  M  H  SLR  +   GWI  LLEEAENERMHL+TFM+V KP    R  V   Q 
Sbjct: 101 PGFVAAMHRHLTSLRNMQRDYGWIHTLLEEAENERMHLLTFMKVQKPSPLFRMGVVFAQF 160

Query: 147 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK-----GNIENVPAPAIATD 201
            +   + + Y+  PK  HR+VGYLEEEA+ +YT  ++ +++      + + + AP I+ +
Sbjct: 161 GYVGLFSILYMFFPKVCHRVVGYLEEEAVKTYTHCIEVINQEGSPISHWKTMVAPQISRN 220

Query: 202 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           YW L  N++L DV+  +R DE HHRDVNH  +D
Sbjct: 221 YWYLSDNASLLDVIYAIRKDEEHHRDVNHTLAD 253


>gi|149239580|ref|XP_001525666.1| alternative oxidase 1, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451159|gb|EDK45415.1| alternative oxidase 1, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 390

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 133/239 (55%), Gaps = 31/239 (12%)

Query: 26  FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------ 67
           + P E Y  +++     H  P  F +K     +K+ R+  DL                  
Sbjct: 120 YSPAELYGVEVT-----HKTPANFREKFCYGLIKTCRFWFDLVTGYAEPKTGDPNEYKGT 174

Query: 68  ---FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
                + ++  R + LE++A VPG V   L   +SLR  +   G+I+  LEEAE ERMHL
Sbjct: 175 RWEMTESKWMTRIIFLESIAGVPGSVAAFLRQLQSLRLLKRDRGFIQTYLEEAEQERMHL 234

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           +  +++ KP  + RA+++  QGVF NA+FL Y+ +P  A  +VGY+EEEA H+YTE LK+
Sbjct: 235 LVALKIGKPSLFTRAIMYVGQGVFANAFFLTYMANPNAAASIVGYIEEEACHTYTELLKD 294

Query: 185 LD-KGN---IENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 238
           LD KG     EN+  P IA +YW  L   ST KD++L +RADEA HR+VNH  +++  Q
Sbjct: 295 LDNKGKFPIFENMTIPKIAVEYWPGLNHQSTFKDLILQIRADEAKHREVNHTFANLDLQ 353


>gi|348681989|gb|EGZ21805.1| hypothetical protein PHYSODRAFT_247287 [Phytophthora sojae]
          Length = 297

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 114/182 (62%), Gaps = 13/182 (7%)

Query: 41  KKHHAPTTFSDKMALWTVKSLR----------WPTDLFFQRRYGCRAMMLETVAAVPGMV 90
           + HH      +++A   VK+LR           P     ++ +  R + LE+VA VPGMV
Sbjct: 116 QTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEKDWLNRCLFLESVAGVPGMV 175

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
           GGML H +SLR  +   GWI  LLEEAENERMHL+ FM + +P ++ RALV   QGVFFN
Sbjct: 176 GGMLRHLRSLRLLKRDYGWIHTLLEEAENERMHLLIFMNIKQPGYFFRALVVGAQGVFFN 235

Query: 151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPP 207
            +FL YL+SPK  HR VGYLEEEA+ +Y+  L++++ G+++      AP IA  Y++LP 
Sbjct: 236 GFFLTYLVSPKTCHRFVGYLEEEAVKTYSCLLQDIEDGHLDAWKEKKAPLIAQTYYKLPE 295

Query: 208 NS 209
           ++
Sbjct: 296 DA 297


>gi|290972516|ref|XP_002668998.1| alternative oxidase [Naegleria gruberi]
 gi|284082538|gb|EFC36254.1| alternative oxidase [Naegleria gruberi]
          Length = 362

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 113/201 (56%), Gaps = 7/201 (3%)

Query: 41  KKHHAPTTFSDKMALW-TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           +K   P   +D+ A W   + +       F R     ++ LET++A PGMVGGM  H  S
Sbjct: 149 EKRMEPRNRTDRWAQWWARRCVARILKFLFGRNMLRYSVFLETMSATPGMVGGMWRHFAS 208

Query: 100 LR-----RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 154
           LR     R +     + ALLEEAEN RMH++  +E+      ER L+   Q  F   YF 
Sbjct: 209 LRSKPIDRCKKEHLRVGALLEEAENHRMHMLVLLEMTHQNILERILMVVAQLSFSQYYFY 268

Query: 155 GYLISPK-FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 213
            Y ++ K F+HR VGYL E A+ SY   LK++D+  I N PAP +A +YW LP N+TL+D
Sbjct: 269 IYSLAGKTFSHRFVGYLAETAVESYGLVLKQIDEKKIANPPAPEMAINYWNLPKNATLRD 328

Query: 214 VVLVVRADEAHHRDVNHYASD 234
           V+L +R DE  HR+ NH  SD
Sbjct: 329 VILAIRMDECKHREFNHALSD 349


>gi|18642678|gb|AAL76179.1|AC074105_13 Putative alternative oxidase [Oryza sativa]
          Length = 243

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 92/143 (64%), Gaps = 24/143 (16%)

Query: 110 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 169
           +  + EEAENE+MHLMTFMEVAK +  +  + F     F ++                  
Sbjct: 125 VGGVDEEAENEQMHLMTFMEVAKLRCIDVTIFFVATNDFSSS------------------ 166

Query: 170 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 229
                  SYTE+LK+++ G IENVP P IA DYWRLP ++TLKDVV+VV ADEAHHRDVN
Sbjct: 167 ------DSYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVN 220

Query: 230 HYASDIHYQGRQLRESPAPLGYH 252
           H+ASD+H+QG  L+++PA L YH
Sbjct: 221 HFASDVHFQGMDLKDTPALLDYH 243


>gi|428172811|gb|EKX41717.1| hypothetical protein GUITHDRAFT_153725, partial [Guillardia theta
           CCMP2712]
          Length = 232

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 89/147 (60%), Gaps = 8/147 (5%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 92
           K H  P   +D +AL  V++ RW  D     + G         RA+ LETVA VPGMVGG
Sbjct: 86  KTHVDPHDRADSLALSAVQAARWTFDTLSGYKIGNITESKVINRAIFLETVAGVPGMVGG 145

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ML H +SLR      GWI  LLEEAENERMHL+TF+ + KP    R  V   QG+F N +
Sbjct: 146 MLRHLRSLRTMNRDHGWIHTLLEEAENERMHLLTFVTIKKPGPIFRLAVIGTQGIFMNLF 205

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYT 179
           FL Y++ PK  HR VGYLEEEA+ +YT
Sbjct: 206 FLTYMVYPKICHRFVGYLEEEAVKTYT 232


>gi|126668999|ref|ZP_01739937.1| putative oxidase [Marinobacter sp. ELB17]
 gi|126626548|gb|EAZ97207.1| putative oxidase [Marinobacter sp. ELB17]
          Length = 142

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 85/118 (72%)

Query: 40  LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 99
           L KHH P+ FSD++A    + LR+  DLFF +RYG RA++LETVAAVPGMVGGM+ H +S
Sbjct: 17  LSKHHTPSGFSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRS 76

Query: 100 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 157
           LRR E +  WI  LLEEAENERMHLMTF+++A+P   ER L+   QG F  A++   L
Sbjct: 77  LRRMEDNREWIHTLLEEAENERMHLMTFVQIAQPSVLERVLILLAQGFFLPAFYFSTL 134


>gi|33328283|gb|AAQ09592.1| alternative oxidase [Cryptosporidium parvum]
          Length = 144

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGV 147
           MVG ML H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  
Sbjct: 1   MVGAMLRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFA 60

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRL 205
           F   Y + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ L
Sbjct: 61  FLIFYTVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGL 120

Query: 206 PPNSTLKDVVLVVRADEAHHRDVN 229
           P ++T++D+ L +R DE+HHRDVN
Sbjct: 121 PEDATIRDLFLAMRRDESHHRDVN 144


>gi|163796586|ref|ZP_02190545.1| Alternative oxidase [alpha proteobacterium BAL199]
 gi|159178146|gb|EDP62691.1| Alternative oxidase [alpha proteobacterium BAL199]
          Length = 146

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 81/113 (71%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTF++VA+P   ER ++   Q VF+N YF  YL +PK AHRMV Y EEEA++SYT +
Sbjct: 1   MHLMTFVQVAQPTILERGIIMLTQAVFYNFYFFLYLFAPKTAHRMVAYFEEEAVNSYTNY 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           L ++D G   N PAP IA  YW L P++TL+DVVL VRADEA HRD NH  +D
Sbjct: 61  LADIDAGRHPNPPAPEIAIKYWDLAPDATLRDVVLAVRADEAGHRDRNHDFAD 113


>gi|295646739|gb|ADG23120.1| alternative oxidase [Rhizoplaca chrysoleuca]
          Length = 180

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 85/121 (70%)

Query: 70  QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           +R++  R + LE+VA VPGMV   + H  SLRR +   GWI+ LLEEA NERMHL+TFM+
Sbjct: 52  ERKWLIRFLFLESVAGVPGMVAASIRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFMK 111

Query: 130 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 189
           +A+P  + + ++   QGVF+N +F  YL+SP+  HR VGYLEEEA+ +YT  L +LD G 
Sbjct: 112 IAEPGRFMKLMILGAQGVFYNGFFFAYLLSPRTCHRFVGYLEEEAVLTYTRVLADLDAGR 171

Query: 190 I 190
           +
Sbjct: 172 L 172


>gi|14599478|gb|AAK70937.1| alternative oxidase 1c [Mangifera indica]
          Length = 78

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 91  GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 150
           GGMLLH KSLR+FEH GGWIKALLEEAENER HLM F+EVAKP+WYERAL+  VQGVF N
Sbjct: 3   GGMLLHFKSLRKFEHRGGWIKALLEEAENERTHLMIFVEVAKPRWYERALILRVQGVFLN 62

Query: 151 AYFLGYLISPKFAHRM 166
           AY LGYLISPKFAHR+
Sbjct: 63  AYSLGYLISPKFAHRI 78


>gi|388509390|gb|AFK42761.1| unknown [Lotus japonicus]
          Length = 176

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           ++ SYWG+  PKV ++DG+EW WNCF PW++Y AD+SID+ KHH P T +DK+A   VK 
Sbjct: 63  VVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKF 122

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 91
           LR  +DL+F+ RYGC AMMLET+AAVPGMVG
Sbjct: 123 LRVLSDLYFKERYGCHAMMLETIAAVPGMVG 153


>gi|238684055|gb|ACR54256.1| alternative oxidase [Anadara ovalis]
          Length = 109

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 80/109 (73%), Gaps = 3/109 (2%)

Query: 113 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 172
           LLEEAENERMHLMT +++ +P W  R  V   QGVF  ++ L YL+SP+F HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLKQPSWLLRQCVVLAQGVFVTSFSLSYLVSPRFCHRFVGYLEE 60

Query: 173 EAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVV 218
           EA+ +YT+ L+++++G +E     PAP +A  YW+L P +T+KDV+L++
Sbjct: 61  EAVKTYTKCLEDIEEGTMEIWKTKPAPDVAVRYWKLDPAATMKDVILMI 109


>gi|218198261|gb|EEC80688.1| hypothetical protein OsI_23112 [Oryza sativa Indica Group]
          Length = 91

 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 78/131 (59%), Gaps = 40/131 (30%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAK +                                          SYTE+
Sbjct: 1   MHLMTFMEVAKLRC----------------------------------------DSYTEY 20

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+++ G IENVP P IA DYWRLP ++TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  
Sbjct: 21  LKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVRADEAHHRDVNHFASDVHFQGMD 80

Query: 242 LRESPAPLGYH 252
           L+++PA L YH
Sbjct: 81  LKDTPALLDYH 91


>gi|110288605|gb|ABB46743.2| transposon protein, putative, unclassified [Oryza sativa Japonica
           Group]
          Length = 264

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 65/76 (85%)

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 236
           SYTE+LK+++ G IENVP P IA DYWRLP ++TLKDVV+VV ADEAHHRDVNH+ASD+H
Sbjct: 189 SYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVNHFASDVH 248

Query: 237 YQGRQLRESPAPLGYH 252
           +QG  L+++PA L YH
Sbjct: 249 FQGMDLKDTPALLDYH 264


>gi|238684053|gb|ACR54255.1| alternative oxidase [Crassostrea virginica]
          Length = 109

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 75/109 (68%), Gaps = 3/109 (2%)

Query: 113 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 172
           LLEEAENERMHLMT +++ +P W  R  V   QG F   +   YL+SP+F HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLRQPSWLFRMGVIVSQGTFVTMFSGAYLLSPRFCHRFVGYLEE 60

Query: 173 EAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVV 218
           EA+ +Y++ LK+++ G +   +   AP +AT YW+LP  +++KDVVL +
Sbjct: 61  EAVFTYSKCLKDIESGPLKHWQTQKAPDVATRYWKLPETASMKDVVLAI 109


>gi|238684059|gb|ACR54258.1| alternative oxidase, partial [Mercenaria mercenaria]
          Length = 109

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 3/109 (2%)

Query: 113 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 172
           LLEEAENERMHLMT +++ +P    +  V   QGVF   + + YLISP+F HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLKQPSRLFKWCVIGTQGVFVGMFSVWYLISPRFCHRFVGYLEE 60

Query: 173 EAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVV 218
           EA+ +YT+ L++++ G +E     P+P +A  YW LP ++T+KDV+L +
Sbjct: 61  EAVKTYTKCLEDIESGALEHWKTQPSPEVAITYWNLPEDATMKDVILAI 109


>gi|238684057|gb|ACR54257.1| alternative oxidase, partial [Ephydatia muelleri]
          Length = 109

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 3/109 (2%)

Query: 113 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 172
           LLE+AENERMHL+T + + KP  + R +V A QGVF    +  Y +SP+F HR VGYLEE
Sbjct: 1   LLEDAENERMHLLTALALKKPGPFFRLIVMAGQGVFVTLXWASYQVSPRFCHRFVGYLEE 60

Query: 173 EAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTLKDVVLVV 218
           +A+ +YTE L  +D G+++    +PAP IA  YW+L  ++ ++DV+L +
Sbjct: 61  QAVGTYTECLHSIDNGDLKTWALLPAPPIAVQYWKLKKDAMMRDVILAI 109


>gi|167405745|gb|ABZ79700.1| alternative oxidase [Solanum lycopersicum]
          Length = 163

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 51/65 (78%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   K  K DG+EWKWNCFRPW  YEAD+SIDL KHHAP TF DK A WTVK L
Sbjct: 99  VVSYWGVPPSKATKPDGTEWKWNCFRPWHPYEADMSIDLTKHHAPVTFLDKFAYWTVKIL 158

Query: 62  RWPTD 66
           R+PTD
Sbjct: 159 RFPTD 163


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 76   RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
            R ++LE+ A VPG V     H  SLR  +   G I   LEEAENERMHL+  M++ +   
Sbjct: 3015 RLIILESFAGVPGFVAAGFRHFYSLRELKRDHGAIFTFLEEAENERMHLLVCMKMFEASP 3074

Query: 136  YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK------GN 189
              RALV A Q          Y  SP+  HR VGYLEE A+ +Y   +++         G 
Sbjct: 3075 ATRALVVAAQFTMTPLLCATYAASPRAMHRFVGYLEETAVMTYANLVEKAATPGTRLHGA 3134

Query: 190  IENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 230
               + AP IA  YW+L  +++  + +  + ADE+HHRDVNH
Sbjct: 3135 WAGLDAPDIAKSYWKLDDDASWAECLRHMLADESHHRDVNH 3175


>gi|340502185|gb|EGR28897.1| hypothetical protein IMG5_166900 [Ichthyophthirius multifiliis]
          Length = 398

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 70  QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           ++++  R + LETVA VPG V  M  +  SLR  +   GWI  LLEEAENERMHL+TFM+
Sbjct: 19  EKKWLNRMLFLETVAGVPGFVAAMHRNLTSLRNMQRDYGWIHTLLEEAENERMHLLTFMK 78

Query: 130 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK-G 188
           V KP    R  V   Q  +   + + Y+  PK  HR+VGYLEEEA+ +YT  ++ L    
Sbjct: 79  VQKPSPLFRMGVVFAQFGYVGLFSILYMFFPKVCHRVVGYLEEEAVKTYTHCIEVLSPIS 138

Query: 189 NIENVPAPAIATDYW 203
           N + + A  I+  YW
Sbjct: 139 NWKTIMATQISRKYW 153


>gi|238487558|ref|XP_002375017.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220699896|gb|EED56235.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 142

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 4/103 (3%)

Query: 138 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 194
           R +V   QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +++++ G +     + 
Sbjct: 2   RLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLE 61

Query: 195 APAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 236
           AP IA  YW++P    T+KD+++ VRADEA HR+VNH   +++
Sbjct: 62  APEIAVQYWKMPEGQRTMKDLLMYVRADEAKHREVNHTLGNLN 104


>gi|218196955|gb|EEC79382.1| hypothetical protein OsI_20294 [Oryza sativa Indica Group]
          Length = 128

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEA  +    
Sbjct: 1   MHLMTFMEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAPSTSRTT 60

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
                + ++      + +T     P   +                    +  D+H+QG  
Sbjct: 61  RPARSRTSLRRR---SPSTTGGSPPAPRSRTSSSSSTPTRRTTATSTISHRYDVHFQGMD 117

Query: 242 LRESPAPLGYH 252
           L+++PAPL YH
Sbjct: 118 LKDTPAPLDYH 128


>gi|294462859|gb|ADE76971.1| unknown [Picea sitchensis]
          Length = 240

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query: 5   YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWP 64
           YWG+   K ++ DGS W WN FRPWE Y  D+SIDLKKHH P TF DK A WTVKSLR+P
Sbjct: 156 YWGLSPAKFSRKDGSSWPWNSFRPWETYTPDMSIDLKKHHVPKTFLDKFAYWTVKSLRFP 215

Query: 65  TDLFFQ 70
           TD+FFQ
Sbjct: 216 TDVFFQ 221


>gi|342184601|emb|CCC94083.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 364

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 36  LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 95
           L  D   HH P  +SD   +++VK LRW  D  F+ RY  RA ML+T+A  P + G  + 
Sbjct: 92  LERDPLSHHKPGCWSDCFCVYSVKFLRWCVDKLFRERYIHRATMLKTIAPAPSLAGAFVA 151

Query: 96  HCK-----SLRRFEHSGGW---IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 147
           + K     ++     SGG+   ++ L+ ++E+   H+   + + +    ERA    + G+
Sbjct: 152 NLKMFLWKNVTYVPSSGGFAAEVRVLMAQSESHASHINILLSMCEITLVERAAAVLLFGM 211

Query: 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
            F  + L +LI P+ A R++GYL EE++  +T  + +++ G +   P PA A  YW L
Sbjct: 212 HFFIFTLLFLIQPRMAFRLLGYLNEESVVIWTHMINDIELGKVVERPVPAAAIQYWGL 269


>gi|407415182|gb|EKF36790.1| GTPase activating protein of Rab-like GTPase, putative [Trypanosoma
           cruzi marinkellei]
          Length = 372

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H  P  F+D   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G M+ H +++ +
Sbjct: 114 HSPPQRFTDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRTILK 173

Query: 103 FEHSG---------GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
            E+              + LL +AE+   H+   M + +  + ER     +Q + F  + 
Sbjct: 174 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLMTEITYVERVAALFLQAIHFAIFA 233

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
           L +L+SP+ A R++GYL EE++  +T  + ++D G +     P  A +YW L
Sbjct: 234 LLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDLGKVTERALPQDAIEYWGL 285


>gi|71665747|ref|XP_819840.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885159|gb|EAN97989.1| hypothetical protein, conserved [Trypanosoma cruzi]
 gi|219564532|dbj|BAH03832.1| alternative oxidase [Trypanosoma cruzi]
          Length = 366

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H  P  FSD   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G M+ H + + +
Sbjct: 111 HSPPQRFSDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRMILK 170

Query: 103 FEHSG---------GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
            E+              + LL +AE+   H+   M + +  + ER     +Q + F  + 
Sbjct: 171 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLLTEITYVERVAAVFLQAIHFAIFA 230

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
             +L+SP+ A R++GYL EE++  +T  + ++D G +     P  A +YW L
Sbjct: 231 FLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDFGKVTERALPQDAIEYWGL 282


>gi|254450111|ref|ZP_05063548.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198264517|gb|EDY88787.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 86

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 59/74 (79%)

Query: 157 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 216
           +++P+ AHR+VGYLEEEA+ SYT++ +++D G ++NVP P IA  YW LP ++ L+DVV+
Sbjct: 1   MLAPRVAHRVVGYLEEEAVISYTQYHEKIDAGTVKNVPTPEIAKKYWNLPDDARLRDVVI 60

Query: 217 VVRADEAHHRDVNH 230
           V+R DEA HRD NH
Sbjct: 61  VIREDEAGHRDKNH 74


>gi|407849450|gb|EKG04187.1| GTPase activating protein of Rab-like GTPase, putative [Trypanosoma
           cruzi]
          Length = 366

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 43  HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 102
           H  P  FSD   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G M+ H + + +
Sbjct: 111 HSPPQRFSDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRMILK 170

Query: 103 FEHSG---------GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 153
            E+              + LL +AE+   H+   M + +  + ER     +Q   F  + 
Sbjct: 171 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLMTEITYVERIAAVFLQATHFAIFA 230

Query: 154 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
             +L+SP+ A R++GYL EE++  +T  + ++D G +     P  A +YW L
Sbjct: 231 FLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDLGKVTERALPQDAIEYWGL 282


>gi|126668998|ref|ZP_01739936.1| alternative oxidase [Marinobacter sp. ELB17]
 gi|126626547|gb|EAZ97206.1| alternative oxidase [Marinobacter sp. ELB17]
          Length = 72

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 55/68 (80%)

Query: 167 VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHR 226
           +GY EE A++SY E+L E+D G +ENVPAP IA DYW+LP ++TL+DV++VVR DEA HR
Sbjct: 1   MGYFEEAAVYSYGEYLAEVDSGRLENVPAPQIAIDYWKLPADATLRDVIIVVRMDEAGHR 60

Query: 227 DVNHYASD 234
           DVNH  +D
Sbjct: 61  DVNHRFAD 68


>gi|380474941|emb|CCF45511.1| alternative oxidase, partial [Colletotrichum higginsianum]
          Length = 241

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 57/77 (74%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
            R + LE++A VPGMV GML H  SLRR +   GWI++LLEE+ NERMHL+TFM++++P 
Sbjct: 161 VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPG 220

Query: 135 WYERALVFAVQGVFFNA 151
           W+ + ++   QGVF++ 
Sbjct: 221 WFMKLMILGAQGVFYSG 237


>gi|340057567|emb|CCC51913.1| conserved hypothetical protein, fragment, partial [Trypanosoma
           vivax Y486]
          Length = 324

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 42  KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS-L 100
            H  P  F+D   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G  + + K  L
Sbjct: 117 SHCKPNCFNDYCCIYMVKLLRWCADKLFRERYIHRATMLKVIAPAPSLAGAFVANLKLFL 176

Query: 101 RRFEHS---GG-----WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152
           ++ + S   GG      ++ L+ +AE+   H    M+VA   + ER +   + G  F+ +
Sbjct: 177 KKGDASYLQGGPGFASEVRVLMAQAESHASHTHILMQVANITYVERVVALFLFGAHFSIF 236

Query: 153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
              ++  P+ A R++GYL EE++  +T  + ++  G I +   P  A DYW L
Sbjct: 237 SFLFVFCPRMAFRLMGYLGEESVVIWTHMINDIVLGKIGDRAIPRAAFDYWSL 289


>gi|340057356|emb|CCC51701.1| putative alternative oxidase [Trypanosoma vivax Y486]
          Length = 213

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 56/92 (60%), Gaps = 8/92 (8%)

Query: 51  DKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGMLLHCKSLRR 102
           D +A   V++ RW  D F   R+G         R + LETVA VPGMVGGML H  SLR+
Sbjct: 86  DTLAYRLVRTCRWAFDTFSLYRFGSLTEQKVINRCLFLETVAGVPGMVGGMLRHLTSLRQ 145

Query: 103 FEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
                GWI  LL EAENERMHLMTF+E+ + +
Sbjct: 146 MRRDKGWINTLLVEAENERMHLMTFIELRQAR 177


>gi|397630745|gb|EJK69895.1| hypothetical protein THAOC_08808 [Thalassiosira oceanica]
          Length = 154

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 133 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 192
           P    R  V   Q  F   +   Y+ISP + HR VGY+EEEA H+YT  ++E+ K   E 
Sbjct: 4   PGTLIRVAVVGSQFGFGCFFLTAYIISPAWCHRFVGYIEEEACHTYTRIVEEIQKAP-EG 62

Query: 193 VP--------APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235
            P        AP IA  YW L    T+ DV++ VRADEA HRDVNH  S +
Sbjct: 63  TPLAEWRTQAAPKIAKGYWHLGEEGTVYDVMMAVRADEAEHRDVNHAVSGV 113


>gi|71748286|ref|XP_823198.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70832866|gb|EAN78370.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 351

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 34  ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG- 92
           A L  +   HH P  ++D   +  VK LRW  D  F+ RY  RA ML+ +A  P M G  
Sbjct: 79  AALERETLNHHEPNCWNDYCCVSLVKLLRWCADKLFRERYIHRATMLKAIAPAPAMAGAI 138

Query: 93  -----MLLHCKSLRRFEHSGGW---IKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
                M L  K        G +   ++ L+ + E+   H+   + + +    ER     +
Sbjct: 139 VANLRMYLRKKDATYLPSDGNFSSEVRVLMAQMESHAAHVNILLSMCEITTVERVAAVLL 198

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 204
            G+ +  + L +L+ P+ A R++GYL EE++  +T  + +++ G I   P P  A  YW 
Sbjct: 199 YGLHYFIFTLLFLLYPRMAFRLMGYLNEESVVIWTHMINDVELGKIVERPIPRAALQYWG 258

Query: 205 L 205
           L
Sbjct: 259 L 259


>gi|261333103|emb|CBH16098.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 351

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 34  ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 93
           A L  +   HH P  ++D   +  VK LRW  D  F+ RY  RA ML+ +A  P M G +
Sbjct: 79  AALERETLNHHEPNCWNDYCCVSLVKLLRWCADKLFRERYIHRATMLKAIAPAPAMAGAI 138

Query: 94  LLHCKS-LRRFEHS--------GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 144
           + + +  LR+ + +           ++ L+ + E+   H+   + + +    ER     +
Sbjct: 139 VANLRMYLRKKDATYLPSHGNFSSEVRVLMAQMESHAAHVNILLSMCEITTVERVAAVLL 198

Query: 145 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 204
            G+ +  + L + + P+ A R++GYL EE++  +T  + +++ G I   P P  A  YW 
Sbjct: 199 YGLHYFIFTLLFFLYPRMAFRLMGYLNEESVVIWTHMINDVELGKIVERPIPRAALQYWG 258

Query: 205 L 205
           L
Sbjct: 259 L 259


>gi|348681992|gb|EGZ21808.1| hypothetical protein PHYSODRAFT_354419 [Phytophthora sojae]
          Length = 212

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 11/112 (9%)

Query: 32  YEADLSIDLKKHHAPTT-FSDKMALWTVKSLR----------WPTDLFFQRRYGCRAMML 80
           Y+ D   D+++ H P     +++A   VK+LR           P     ++ +  R + L
Sbjct: 101 YDLDKISDMQQTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEKDWLNRCLFL 160

Query: 81  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 132
           E+VA VPGMVGGML H +SLRR +   GWI  LLEEAENERMHL+ FM + +
Sbjct: 161 ESVAGVPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFMNLKQ 212


>gi|384247842|gb|EIE21327.1| hypothetical protein COCSUDRAFT_48069 [Coccomyxa subellipsoidea
           C-169]
          Length = 680

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 9/186 (4%)

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
            R P D  + RR     ++LE ++ VPG V  ++ H ++L      G ++++   E+ N 
Sbjct: 352 FRIPRDTVWFRR----VLLLECLSPVPGTVASIVAHVRALATLRGPGSFVESYQRESGNA 407

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
             HL+T +++ +P    RALV   Q  F   Y   Y ++P+  H  V +L      + + 
Sbjct: 408 HAHLLTLLQL-RPSLSLRALVLLSQAAFALPYAAAYAVAPRACHAFVCHLSGLTGEAISG 466

Query: 181 FLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 237
            L++LD G+I   + +PAP  A  YW LP  +T++ V+LVVRAD      +N  A    +
Sbjct: 467 ALRDLDSGSIPSWQRLPAPESAAAYWGLPEGATMRTVLLVVRADMVARSAINQDADPATF 526

Query: 238 Q-GRQL 242
           Q G QL
Sbjct: 527 QPGCQL 532


>gi|222616184|gb|EEE52316.1| hypothetical protein OsJ_34333 [Oryza sativa Japonica Group]
          Length = 72

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 47/64 (73%), Gaps = 3/64 (4%)

Query: 78  MMLETVAAVPGMVGG---MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
           MMLETVAAVP    G   MLLH  SLR  +HS GWI+ LLEEAENERMHLM FM V K +
Sbjct: 1   MMLETVAAVPATGDGGRHMLLHLCSLRDIKHSDGWIRVLLEEAENERMHLMAFMAVPKRR 60

Query: 135 WYER 138
           WYER
Sbjct: 61  WYER 64


>gi|293338880|gb|ADE43747.1| alternative oxidase [Glugea plecoglossi]
          Length = 77

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           ++GG+  H  SLR  + +   IK LL EAENER HL+TF+EV KP  +++  +  +Q VF
Sbjct: 1   LIGGLFNHLYSLRNLKQNHN-IKKLLMEAENERQHLLTFLEVMKPNLFDQIAIKMIQVVF 59

Query: 149 FNAYFLGYLISPKFAHR 165
           FN+YF+ YL++PK AHR
Sbjct: 60  FNSYFIFYLLAPKVAHR 76


>gi|117662855|gb|ABK55726.1| mitochondrial alternative oxidase [Cucumis sativus]
          Length = 55

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 107 GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           GG ++ LLEEAENERMHLMT +E+ +PKW+ER LV  VQGVFFNA+F+ YL  P+
Sbjct: 1   GGGLRPLLEEAENERMHLMTMIELVQPKWHERLLVITVQGVFFNAFFVLYLTVPQ 55


>gi|1478343|gb|AAC34192.1| alternative oxidase Aox1 precursor [Glycine max]
          Length = 40

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH 164
           MTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAH
Sbjct: 1   MTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAH 40


>gi|71564278|gb|AAZ38329.1| alternative oxidase [Metarhizium anisopliae]
          Length = 59

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 174
           EA NERMHL+TFM++ +P W+ + ++   QGVFFNA F+ YL+ P+  HR VGYLEEEA
Sbjct: 1   EAYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEA 59


>gi|118429715|gb|ABK91846.1| mitochondrial alternative oxidase [Cryptosporidium parvum]
          Length = 187

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 93
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 99  KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 158

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERM 122
           L H  SLR+ +   GWI  LLEEAENE++
Sbjct: 159 LRHFSSLRKMKRDNGWIHTLLEEAENEKI 187


>gi|118429717|gb|ABK91847.1| mitochondrial alternative oxidase [Cryptosporidium suis]
          Length = 187

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 41  KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 93
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 99  KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 158

Query: 94  LLHCKSLRRFEHSGGWIKALLEEAENERM 122
           L H  SLR+ +   GWI  LLEEAENE++
Sbjct: 159 LRHFSSLRKMKRDNGWIHTLLEEAENEKI 187


>gi|41058326|gb|AAR99155.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 38/42 (90%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 166
           MTFMEVAKPKWYERALV AVQGVFFNAYF  YLISPK AHR+
Sbjct: 1   MTFMEVAKPKWYERALVIAVQGVFFNAYFAAYLISPKLAHRI 42


>gi|145520557|ref|XP_001446134.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413611|emb|CAK78737.1| unnamed protein product [Paramecium tetraurelia]
          Length = 143

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 33/156 (21%)

Query: 96  HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 155
           H +SLRR +   GWI  LLEEAENER+HL+TF+++ K       ++    G F       
Sbjct: 4   HLRSLRRMKIDQGWIHTLLEEAENERIHLLTFLKIKKT-----LIIIQNWGSF------S 52

Query: 156 YLISP--KFAHRMVGYLE--------EEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
           YL+ P       ++G L+           IH +T     L K N  ++       +YW L
Sbjct: 53  YLVIPISSVLKSVIGLLDTWKMWQDGSPPIHQWT-----LRKANHHSI-------EYWGL 100

Query: 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
             ++TL DVV  +R DE HH+D+NH+ +D + Q +Q
Sbjct: 101 EDDATLFDVVKGIRKDEEHHKDINHFFADDYTQFKQ 136


>gi|41058330|gb|AAR99157.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 166
           MTFMEVAKPKWYERALVF VQGVFFNAYF  YL+SPK AHR+
Sbjct: 1   MTFMEVAKPKWYERALVFTVQGVFFNAYFATYLVSPKLAHRI 42


>gi|41058332|gb|AAR99158.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 166
           MTFMEVAKPKWYERALVF VQGVFFNAYF  YL+SPK AHR+
Sbjct: 1   MTFMEVAKPKWYERALVFTVQGVFFNAYFATYLLSPKLAHRI 42


>gi|83308257|emb|CAJ44430.1| alternative oxidase [Cocos nucifera]
          Length = 64

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 1  MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 56
          M+VSYWG+   KV K+DG+EWKW CF+PW++Y ++ SIDL KHH P T+ +K+A W
Sbjct: 7  MLVSYWGMAPAKVVKEDGTEWKWPCFKPWDSYTSNQSIDLHKHHVPMTWGEKLAYW 62


>gi|338227624|gb|AEI91024.1| alternative oxidase [Beauveria bassiana]
          Length = 58

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 116 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 173
           EA NERMHL+TFM++ +P W+ + ++   QGVFFN  FL YL +PK  HR VGYLEEE
Sbjct: 1   EAYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNGMFLMYLANPKIVHRFVGYLEEE 58


>gi|119713229|gb|ABL97296.1| possible alternative respiratory pathway oxidase, partial
           [uncultured marine bacterium HF10_05C07]
          Length = 62

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 178 YTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234
           YTE+L E+DKG IEN  AP IA +YW L  ++TL+DVV+ VR DEA HRD NH  +D
Sbjct: 1   YTEYLDEIDKGQIENTQAPEIAINYWNLSKDATLRDVVIAVRNDEAGHRDKNHLIAD 57


>gi|37520170|ref|NP_923547.1| oxidase [Gloeobacter violaceus PCC 7421]
 gi|35211163|dbj|BAC88542.1| oxidase [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 21/193 (10%)

Query: 53  MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 112
           M  + V  L +  D+ ++ R   R  +LETVA VP      +LH            W+K 
Sbjct: 1   MIRFLVSILVFVIDVLYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKSDWLKV 60

Query: 113 LLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 171
              E  NE  HL+    +    +WY+R L  +   V++    + Y+ISP+ A+  +  +E
Sbjct: 61  HFAETWNELHHLLIMESLGGNDRWYDRLLAKSSALVYYWVIVVLYMISPRSAYEFMRQVE 120

Query: 172 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 212
           E A H+Y EFLK  D   ++  PAP +A  Y+                   R P   TL 
Sbjct: 121 EHAFHTYDEFLKS-DGERLKLQPAPVVAVSYYLTGDLYMFDEFQTSRRPEERRPACDTLY 179

Query: 213 DVVLVVRADEAHH 225
           DV + +R DEA H
Sbjct: 180 DVFVNIRDDEAEH 192


>gi|118429709|gb|ABK91843.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
 gi|118429713|gb|ABK91845.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
          Length = 187

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 12/114 (10%)

Query: 17  DGSEWKWNCFRP-WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRRY 73
           +G E+ +NC  P W+  E +     K H  P  F DK++ + V +LR   DL   +++R+
Sbjct: 78  EGKEYGFNC--PIWDLEEVNNV--QKTHFCPNGFKDKISYYLVIALRKSFDLLTRYKKRH 133

Query: 74  G----CRAMM-LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 122
                CR ++ LETVA VPGMVG ML H  SLR+ +   G I  LLEEAENE++
Sbjct: 134 NEYQWCRRIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGLIHTLLEEAENEKI 187


>gi|118429707|gb|ABK91842.1| mitochondrial alternative oxidase [Cryptosporidium meleagridis]
 gi|118429711|gb|ABK91844.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
          Length = 186

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 12/113 (10%)

Query: 17  DGSEWKWNCFRP-WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRRY 73
           +G E+ +NC  P W+  E +     K H  P  F DK++ + V +LR   DL   +++R+
Sbjct: 78  EGKEYGFNC--PIWDLEEVNNV--QKTHFCPNGFKDKISYYLVIALRKSFDLLTRYKKRH 133

Query: 74  G----CRAMM-LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
                CR ++ LETVA VPGMVG ML H  SLR+ +   G I  LLEEAENE+
Sbjct: 134 NEYQWCRRIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGLIHTLLEEAENEK 186


>gi|41058334|gb|AAR99159.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 166
           MTF+E++ PKWYERALVFAVQGVFFNAYFL YL SPK AHR+
Sbjct: 1   MTFIELSNPKWYERALVFAVQGVFFNAYFLAYLASPKLAHRI 42


>gi|293338882|gb|ADE43748.1| alternative oxidase [Spraguea lophii]
          Length = 78

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 148
           MVGG+  H  SLR    +   I+ LL+EAENER HL+TF+++ KP  ++R ++   Q VF
Sbjct: 1   MVGGLFHHLYSLRNLVDNKERIQILLKEAENERQHLLTFLKIMKPNIFDRFVIKITQAVF 60

Query: 149 FNAYFLGYLISPKFAHR 165
           FN Y + Y + P+  HR
Sbjct: 61  FNTYMVFYFLFPRTCHR 77


>gi|255615497|ref|XP_002539678.1| hypothetical protein RCOM_1998260 [Ricinus communis]
 gi|223503608|gb|EEF22705.1| hypothetical protein RCOM_1998260 [Ricinus communis]
          Length = 65

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%)

Query: 37 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 96
          +IDL  HH P   SD +A   VK+LR+  D FF +RYG RA++LETVAAVPGMVG  L H
Sbjct: 5  AIDLSIHHKPAGVSDTIAFGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNH 64


>gi|428219613|ref|YP_007104078.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
 gi|427991395|gb|AFY71650.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
          Length = 243

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  ++ ++ R   R  +LETVA VP      +LH      F     W+K    E+
Sbjct: 6   VSILVFVINVLYRDRPIPRFYVLETVARVPYFAYLSVLHLYETLGFWRRADWLKVHFAES 65

Query: 118 ENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+   E+      ++R L      V++      Y+++PK A+  +  +EE A H
Sbjct: 66  WNELHHLLIAEELGGNNNPFDRLLAKTAALVYYWIVVGIYVVNPKAAYHFMEMVEEHAYH 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           +Y E+LKE ++  +++ PAPAIA  Y+                   R P    L DV + 
Sbjct: 126 TYDEYLKE-NEAELKSKPAPAIAVKYYRDGDLYLFDEFQTGQVANSRRPKVDNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DEA H
Sbjct: 185 IRDDEAEH 192


>gi|168043241|ref|XP_001774094.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674640|gb|EDQ61146.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 27/183 (14%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D+F++ R   R  +LET+A VP      +LH      +     +IK    E+ NE  HL+
Sbjct: 29  DIFYKNRDYARFYVLETIARVPYFAFVSVLHMYESFGWWRRSDYIKVHFAESWNELHHLL 88

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEF 181
           T   +    +W +R   F  Q +    YF+    YL+SP+ A+     +E+ A H+Y EF
Sbjct: 89  TMEALGGDERWVDR---FLAQHIAVGYYFMTVVMYLLSPRMAYHFSECVEKHAFHTYDEF 145

Query: 182 LKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADE 222
           +K L    ++ +PAP +A  Y+                   R P    L DV   +R DE
Sbjct: 146 IK-LHGEELKKLPAPEVAVKYYTSGDLYLFDEFQTDRTPNTRRPKIDNLYDVFYNIREDE 204

Query: 223 AHH 225
           A H
Sbjct: 205 AEH 207


>gi|255086799|ref|XP_002509366.1| predicted protein [Micromonas sp. RCC299]
 gi|226524644|gb|ACO70624.1| predicted protein [Micromonas sp. RCC299]
          Length = 214

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 23/180 (12%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R   LETVA VP      +LH      F     ++K    +  NE  HL+
Sbjct: 21  DKLYEGRSYARFYALETVARVPYFSFLSVLHLYETLGFWRRADYLKVHFAQTMNEFHHLL 80

Query: 126 TFMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 182
               +   K +          VF+  YF+    YL+SP+ A+ +   +EE A H+Y EFL
Sbjct: 81  IMESMGGDKRFTDRFFAQHMAVFY--YFIACAMYLVSPRMAYNLSEQVEEHAYHTYDEFL 138

Query: 183 KELDKGNIENVPAPAIATDYW-----------------RLPPNSTLKDVVLVVRADEAHH 225
           KE ++  +++ P P IAT Y+                 R P    L DV + VR DEA H
Sbjct: 139 KE-NELELKSKPPPPIATHYYTEGDLFLFDEFQTGAARRRPSIDNLYDVFVNVRNDEAEH 197


>gi|443311406|ref|ZP_21041035.1| Alternative oxidase [Synechocystis sp. PCC 7509]
 gi|442778603|gb|ELR88867.1| Alternative oxidase [Synechocystis sp. PCC 7509]
          Length = 247

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           + F++ R   R  +LETVA VP      +LH      +     WIK    E+ NE  HL+
Sbjct: 14  NTFYRTRIYPRFYVLETVARVPYFAFTSVLHLYETMGWWRKADWIKVHFAESWNELHHLL 73

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +   + W +R +      V++      Y++SP+ A+  +  +EE A H+Y  F+KE
Sbjct: 74  IAESLGGNQYWIDRFVAHTGAFVYYWIVVFVYVLSPRHAYNFMQQVEEHAYHTYNAFIKE 133

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
                ++ +PAP IA +Y+                   R P    L DV + +R DE  H
Sbjct: 134 -HGDELKTLPAPQIAINYYQDGDLYLFDEFQTTRVPQERRPKIENLYDVFVAIREDELEH 192


>gi|41058328|gb|AAR99156.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 166
           MT +E+ +PKWYER LV AVQGVFFN YF+ YL+SPK AHR+
Sbjct: 1   MTMVELVQPKWYERLLVLAVQGVFFNLYFVLYLVSPKLAHRI 42


>gi|428307127|ref|YP_007143952.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
 gi|428248662|gb|AFZ14442.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
          Length = 240

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 21/193 (10%)

Query: 53  MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 112
           M  + V  L +  +  ++ R   R  +LETVA VP      +LH      +     W+K 
Sbjct: 1   MIRFLVDVLVFVINTLYRDRAYQRFYVLETVARVPYFSFLSVLHLYETLGWWRKADWLKV 60

Query: 113 LLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 171
              E+ NE  HL+    +   K W +R        V++      YL+SP+ A+  +  +E
Sbjct: 61  HFAESWNELHHLLIMESLGGNKHWGDRLFAQTTALVYYWVVVALYLVSPRTAYNFMQLVE 120

Query: 172 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 212
           E A H+Y  F+KE  +  ++  PAP +A +Y+                   R P    L 
Sbjct: 121 EHAHHTYETFVKE-HEAELKAAPAPLVAINYYRDGDLYLFDEFQTGVKPESRRPAVDNLY 179

Query: 213 DVVLVVRADEAHH 225
           DV + +R DEA H
Sbjct: 180 DVFVNIRDDEAEH 192


>gi|168027826|ref|XP_001766430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682339|gb|EDQ68758.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 245

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 37/188 (19%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 120
           D+F++ R   R  +LET+A +P            L  +E  G W     +K    E+ NE
Sbjct: 29  DVFYKNRDYARFYVLETIARIP-----YFAFVSVLNMYESFGWWRRADYLKVHFAESWNE 83

Query: 121 RMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIH 176
             HL+T   +    +W +R   F  Q +    YF+    YL+SP+ A+     +++ A H
Sbjct: 84  LHHLLTMEALGGDERWVDR---FLAQHIAVGYYFMTVVMYLLSPRMAYHFSECVKKHAFH 140

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYWR-------------LPPNS------TLKDVVLV 217
           +Y EF+  L+   ++N+PAP +A  Y+               PPN+       L DV   
Sbjct: 141 TYDEFIN-LNAEELKNLPAPEVAVKYYTSGDLYLFDEFQTACPPNTRQPKVENLYDVFCN 199

Query: 218 VRADEAHH 225
           +R DEA H
Sbjct: 200 IREDEAEH 207


>gi|427724949|ref|YP_007072226.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
 gi|427356669|gb|AFY39392.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
          Length = 235

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  +  +  R   R  +LETVA VP      +LH      F     W+K    E+
Sbjct: 6   VSILVFVINKVYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKIHFAES 65

Query: 118 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+    +     W +RAL   V   ++      Y++SP+ A+R +  +EE A  
Sbjct: 66  WNELHHLLIMESLGGSNFWLDRALAKTVALAYYWIIVGIYIVSPRSAYRFMELVEEHAYA 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           +Y +FLK  +   ++  PAPAIA +Y+                   R P    L DV + 
Sbjct: 126 TYDKFLKA-EAETLKGQPAPAIAINYYRDGDLYLFDEFQTGQIPEHRRPKVDNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEQEH 192


>gi|388507484|gb|AFK41808.1| unknown [Medicago truncatula]
          Length = 342

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 109 DALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHLL 168

Query: 126 TFMEVAKPKW-YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+    W ++R L   +   ++    L YLISP+ A+     +E  A  +Y +F+KE
Sbjct: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIKE 228

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++ +PAP +A +Y+                   R P    L DV L +R DEA H
Sbjct: 229 QGE-ELKKMPAPEVAVNYYTGGDLYLFDEFRTSRVPNTRRPTIDNLYDVFLNIRDDEAEH 287


>gi|350536613|ref|NP_001234511.1| plastid quinol oxidase [Solanum lycopersicum]
 gi|9937099|gb|AAG02286.1|AF177979_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|9937101|gb|AAG02287.1|AF177980_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|10505366|gb|AAG18449.1|AF302931_1 plastid quinol oxidase [Solanum lycopersicum]
 gi|10505368|gb|AAG18450.1|AF302932_1 plastid quinol oxidase [Solanum lycopersicum]
          Length = 366

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 33/186 (17%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 120
           D  +  R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 132 DTLYHNRNYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYMKVHFAESWNE 186

Query: 121 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
             HL+   E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y 
Sbjct: 187 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVLMYALSPRMAYHFSECVESHAYETYD 246

Query: 180 EFLKELDKG-NIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVR 219
           +F+K  D+G  ++N+PAP IA DY+                   R P    L DV + +R
Sbjct: 247 KFIK--DQGEELKNLPAPKIAVDYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIR 304

Query: 220 ADEAHH 225
            DEA H
Sbjct: 305 DDEAEH 310


>gi|357447777|ref|XP_003594164.1| Alternative oxidase [Medicago truncatula]
 gi|87240787|gb|ABD32645.1| Alternative oxidase [Medicago truncatula]
 gi|355483212|gb|AES64415.1| Alternative oxidase [Medicago truncatula]
          Length = 342

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 109 DALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHLL 168

Query: 126 TFMEVAKPKW-YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+    W ++R L   +   ++    L YLISP+ A+     +E  A  +Y +F+KE
Sbjct: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIKE 228

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++ +PAP +A +Y+                   R P    L DV L +R DEA H
Sbjct: 229 QGE-ELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNIRDDEAEH 287


>gi|254441495|ref|ZP_05054988.1| hypothetical protein OA307_910 [Octadecabacter antarcticus 307]
 gi|198251573|gb|EDY75888.1| hypothetical protein OA307_910 [Octadecabacter antarcticus 307]
          Length = 71

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 40/54 (74%)

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 230
           +  ++L+++D G +ENV AP IA  YW LP ++ L+DVV+V+R DEA HRD NH
Sbjct: 6   AVQQYLEKIDAGKVENVLAPEIAKKYWNLPDDARLRDVVIVIREDEAGHRDKNH 59


>gi|1478345|gb|AAB36072.1| Aox2 [Glycine max]
          Length = 40

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH 164
           MT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AH
Sbjct: 1   MTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAH 40


>gi|2832676|emb|CAA16776.1| putative protein [Arabidopsis thaliana]
 gi|7269072|emb|CAB79181.1| putative protein [Arabidopsis thaliana]
          Length = 335

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKA 240

Query: 185 LDKGNIENVPAPAIATDYWR---LPPNSTLKDVVLVVRADEAHH 225
             +  ++N+PAP IA  Y+    L     L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGGDLYLFENLYDVFVNIRDDEAEH 283


>gi|158333679|ref|YP_001514851.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158303920|gb|ABW25537.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 221

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 26/193 (13%)

Query: 53  MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 112
           MA W   S++    ++  R Y  R  +LETVA VP      +LH            W+K 
Sbjct: 1   MAFWCFSSIK----IYANRPYP-RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKI 55

Query: 113 LLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 171
              E+ NE  HL+    +   + W +R L      +++      Y++SP+ A+  +  +E
Sbjct: 56  HFAESWNELHHLLIMESLGGAEFWGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVE 115

Query: 172 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 212
           E A  SY +FL+  +  +++ +PAP +A  Y+                   R P   TL 
Sbjct: 116 EHAYASYDKFLQS-EAEHLKTLPAPDVAIQYYQDGDLYMFDEFQTAHQAAERRPQVDTLY 174

Query: 213 DVVLVVRADEAHH 225
           DV + +R DE  H
Sbjct: 175 DVFVAIRDDEMEH 187


>gi|449455371|ref|XP_004145426.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
 gi|449525172|ref|XP_004169592.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
          Length = 355

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D F+  R+  R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 118 DAFYHDRHYARFFVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 177

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +FLK 
Sbjct: 178 IMEELGGNDWWFDRFLAQHIAVAYYFMTVFMYMISPRMAYHFSECVESHAFSTYDKFLK- 236

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
            +   ++  PAP +A  Y+                   R P   +L DV + +R DEA H
Sbjct: 237 AEGEELKKQPAPEVAVKYYTEGDLYLFDEFQTSRAPKSRRPKIESLYDVFMNIRDDEAEH 296


>gi|3929647|emb|CAA06190.1| Immutans protein [Arabidopsis thaliana]
          Length = 351

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKA 240

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++N+PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEH 299


>gi|297799790|ref|XP_002867779.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313615|gb|EFH44038.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 351

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKT 240

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++N+PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGSDLYLFDEFQTSRAPNTRRPVIENLYDVFVNIRDDEAEH 299


>gi|18415888|ref|NP_567658.1| alternative oxidase 4 [Arabidopsis thaliana]
 gi|85681033|sp|Q56X52.2|AOX4_ARATH RecName: Full=Ubiquinol oxidase 4, chloroplastic/chromoplastic;
           AltName: Full=Alternative oxidase 4; AltName:
           Full=Plastid terminal oxidase; AltName: Full=Protein
           IMMUTANS; Flags: Precursor
 gi|11692822|gb|AAG40014.1|AF324663_1 AT4g22260 [Arabidopsis thaliana]
 gi|11908102|gb|AAG41480.1|AF326898_1 unknown protein [Arabidopsis thaliana]
 gi|12642914|gb|AAK00399.1|AF339717_1 unknown protein [Arabidopsis thaliana]
 gi|4138855|gb|AAD03599.1| IMMUTANS [Arabidopsis thaliana]
 gi|15010796|gb|AAK74057.1| AT4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|23308315|gb|AAN18127.1| At4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|332659183|gb|AEE84583.1| alternative oxidase 4 [Arabidopsis thaliana]
          Length = 351

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKA 240

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++N+PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEH 299


>gi|363807489|ref|NP_001242139.1| uncharacterized protein LOC100813378 [Glycine max]
 gi|255635539|gb|ACU18120.1| unknown [Glycine max]
          Length = 332

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R+  R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 101 DTLYHDRHYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 160

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 161 IMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFETYDKFIK- 219

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           +    ++ +PAP +A +Y+                   R P    L DV + +R DEA H
Sbjct: 220 VQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDVFVNIRDDEAEH 279


>gi|356555706|ref|XP_003546171.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Glycine max]
          Length = 332

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R+  R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 101 DTLYHDRHYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 160

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 161 IMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFETYDKFIK- 219

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           +    ++ +PAP +A +Y+                   R P    L DV + +R DEA H
Sbjct: 220 VQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDVFVNIRDDEAEH 279


>gi|224116034|ref|XP_002317190.1| predicted protein [Populus trichocarpa]
 gi|222860255|gb|EEE97802.1| predicted protein [Populus trichocarpa]
          Length = 358

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 123 DTLYHDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 182

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 183 IMEELGGNSWWFDRLLAQVIATSYYFMTVLMYALSPRMAYHFSECVESHAFATYDKFIKA 242

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
               +++ +PAP +A  Y+                   R P    L DV L VR DEA H
Sbjct: 243 -QGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNVRDDEAEH 301


>gi|81296552|gb|ABB70513.1| plastid terminal oxidase [Coffea canephora]
          Length = 351

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 33/186 (17%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE-----NE 120
           D  +  R+  R  +LET+A VP      +LH      +E  G W +A L E       NE
Sbjct: 131 DTLYHDRHYARFFVLETIARVPYFAFMSVLHL-----YESFGWWRRADLSEVHFAESWNE 185

Query: 121 RMHLMTFMEVAKPKW-YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
             HL+   E+    W ++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 186 MHHLLIMEELGGNSWWFDRFLAQHIAVFYYFMTVFMYMLSPRMAYHFSECVESHAFETYD 245

Query: 180 EFLKELDKG-NIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVR 219
           +F+K  D+G  ++ +PA  +A  Y+                   R P    + DV L +R
Sbjct: 246 KFIK--DQGEQLKKLPASNVAVKYYTEGNLYLFDEFQTARPPTSRRPKIENMYDVFLNIR 303

Query: 220 ADEAHH 225
            DEA H
Sbjct: 304 DDEAEH 309


>gi|108442448|gb|ABF85790.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           +L W  D+ + +R   +  +LETVA +P      +LH      F  +G  ++ +    E 
Sbjct: 222 ALCWVLDVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEW 281

Query: 120 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
             +H +  ME       W++R L      +++      YL+SPK A+  +  +E  A  +
Sbjct: 282 NELHHLQIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADT 341

Query: 178 YTEFLKELDKGNIENVPAPAIATDYW---------------------RLPPNSTLKDVVL 216
           Y EFL E ++  + ++P P +A +Y+                     R P  +TL DV +
Sbjct: 342 YCEFL-ESNRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFI 400

Query: 217 VVRADEAHHRDVNHYASDIHYQGRQL---RESPAP 248
            VR DE  H     +A       +QL   R SP P
Sbjct: 401 NVRDDELEHV-ATMFAMQNEEIAKQLAIGRGSPGP 434


>gi|9937103|gb|AAG02288.1|AF177981_1 plastid terminal oxidase [Capsicum annuum]
          Length = 357

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R+  R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 123 DTLYHDRHYARFFVLETIARVPYFAFISVLHLYESFGWWRRADYLKVHFAESWNEMHHLL 182

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++      Y +SP+ A+     +E  A  +Y +F+K+
Sbjct: 183 IMEELGGNAWWFDRFLAQHIAVFYYFMTVSMYALSPRMAYHFSECVEHHAYETYDKFIKD 242

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++ +PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 243 -QEAELKKLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEH 301


>gi|359459267|ref|ZP_09247830.1| alternative oxidase [Acaryochloris sp. CCMEE 5410]
          Length = 219

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 21/170 (12%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-KPK 134
           R  +LETVA +P      +LH      F     W+K    E+ NE  HL+    +    K
Sbjct: 24  RFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLIMEALGGDKK 83

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 194
           W +R L   V  +++      Y++SP+ A+  +  +E+EA  +Y  FL +     +++ P
Sbjct: 84  WIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHD-HAEELKSQP 142

Query: 195 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           AP IA  Y+                   R P    L DV + +R DE  H
Sbjct: 143 APQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEH 192


>gi|157782926|gb|ABV72391.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           +L W  D+ + +R   +  +LETVA +P      +LH      F  +G  ++ +    E 
Sbjct: 222 ALCWVLDVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEW 281

Query: 120 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
             +H +  ME       W++R L      +++      YL+SPK A+  +  +E  A  +
Sbjct: 282 NELHHLQIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADT 341

Query: 178 YTEFLKELDKGNIENVPAPAIATDYW---------------------RLPPNSTLKDVVL 216
           Y EFL E ++  + ++P P +A +Y+                     R P  +TL DV +
Sbjct: 342 YCEFL-ESNRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFI 400

Query: 217 VVRADEAHHRDVNHYASDIHYQGRQL---RESPAP 248
            VR DE  H     +A       +QL   R SP P
Sbjct: 401 NVRDDELEHV-ATMFAMQNEEIAKQLAIGRGSPGP 434


>gi|449016710|dbj|BAM80112.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 430

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  F  R   R   LETVA +P      +LH      + H     +    E  NE  HL+
Sbjct: 170 DWAFTDRPIARFWFLETVARMPYFSYLSVLHLYETFNWLHLAELRRTHFAEEWNELHHLL 229

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +    KW +R L + +  +++    + Y++SP+ ++     LE+ A+ +Y +FL E
Sbjct: 230 IMSALGGDAKWSDRFLAYHLSIIYYWLLVVMYIVSPRLSYNFSELLEKHAVDTYEQFLTE 289

Query: 185 LDKGNIENVPAPAIATDYW---------------------RLPPNSTLKDVVLVVRADEA 223
            ++  ++ +PAPAIA  Y+                       PP  TL D  L +R DE 
Sbjct: 290 -NEHRLKALPAPAIAVRYYANEVAYTFQAFGDENGSAVETSRPPVQTLYDAFLNIRLDEE 348

Query: 224 HH 225
            H
Sbjct: 349 EH 350


>gi|428184645|gb|EKX53500.1| plastid terminal oxidase [Guillardia theta CCMP2712]
          Length = 301

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 41/241 (17%)

Query: 15  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 74
           + DG+ W    + P    E    +D+       T S   AL TV  L+   D ++ ++  
Sbjct: 66  RKDGTTWGSKSY-PVSTVEEPEPLDI------VTKSIAQALVTV--LKGSLDWYYHKKSD 116

Query: 75  -CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP 133
             R  +LETVA VP      +LH      +     WIK    EA+NE  HL+    +   
Sbjct: 117 FARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHHLLIMEALGGN 176

Query: 134 K-----WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           K     W  +   FA        YFL     P+ A+ ++  +E  A H+Y++++ E +K 
Sbjct: 177 KEFSDRWIAQHAAFAYYWFCVTFYFL----HPRGAYYVMSLIENHAYHTYSKYI-EANKS 231

Query: 189 NIENVPAPAIATDYW--------------------RLPPNSTLKDVVLVVRADEA-HHRD 227
            + + P+PAIA +Y+                    R P   +L D    +R DE+ HHR 
Sbjct: 232 WLASQPSPAIAKEYYEGGDLYLFDAFHTTRAEEQERRPRVQSLLDTFESIRDDESQHHRT 291

Query: 228 V 228
           +
Sbjct: 292 M 292


>gi|158334717|ref|YP_001515889.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158304958|gb|ABW26575.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 219

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-KPK 134
           R  +LETVA +P      +LH      F     W+K    E+ NE  HL+    +    K
Sbjct: 24  RFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLIMEALGGDKK 83

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 194
           W +R L   V  +++      Y++SP+ A+  +  +E+EA  +Y  FL +     ++  P
Sbjct: 84  WIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHD-HAEELKGQP 142

Query: 195 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           AP IA  Y+                   R P    L DV + +R DE  H
Sbjct: 143 APQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEH 192


>gi|428223604|ref|YP_007107701.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
 gi|427983505|gb|AFY64649.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
          Length = 233

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 21/193 (10%)

Query: 53  MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 112
           M    V  L +  +  ++ R   R  +LETVA VP      +LH            W+K 
Sbjct: 1   MTRILVGILVFVINTLYRDRPYPRFYVLETVARVPYFAYMSVLHLYESLGLWRKADWLKV 60

Query: 113 LLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 171
              E+ NE  HL+    +    +W +R +       ++    L YL SP+ A+  +  +E
Sbjct: 61  HFAESWNELHHLLIMESLGGNDRWVDRFVARHAALAYYWLVVLLYLFSPRSAYHFMELVE 120

Query: 172 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 212
           + A H+Y  FL+E ++  ++  PAPA+A +Y+                   R P    L 
Sbjct: 121 QHAYHTYDVFLQE-NEAALKAEPAPAVAVNYYREGDLYMFDEFQTGSKPETRRPEIRHLY 179

Query: 213 DVVLVVRADEAHH 225
           DV + +R DE  H
Sbjct: 180 DVFVNIRDDEMEH 192


>gi|255554747|ref|XP_002518411.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
 gi|223542256|gb|EEF43798.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
          Length = 356

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D F+  R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 118 DAFYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 177

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +  +++      Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 178 IMEELGGNSWWFDRFLAQHIAIIYYIMTVFMYALSPRMAYHFSECVESHAYATYDKFIKA 237

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++ +PAP +A  Y+                   R P    L DV L +R DEA H
Sbjct: 238 QGE-ELKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIDNLYDVFLNIRDDEAEH 296


>gi|340057568|emb|CCC51914.1| conserved hypothetical protein, fragment, partial [Trypanosoma
           vivax Y486]
          Length = 205

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 110 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 169
           ++ L+ +AE+   H    M+VA   + ER +   + G  F+ +   ++  P+ A R++GY
Sbjct: 7   VRVLMAQAESHASHTHILMQVANITYVERVVALFLFGAHFSIFSFLFVFCPRMAFRLMGY 66

Query: 170 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
           L EE++  +T  + ++  G I +   P  A DYW L
Sbjct: 67  LGEESVVIWTHMINDIVLGKIGDRAIPRAAFDYWSL 102


>gi|384501421|gb|EIE91912.1| hypothetical protein RO3G_16623 [Rhizopus delemar RA 99-880]
          Length = 134

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%)

Query: 36  LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 93
           L I    HH PTT  DK A +TVK+LR   D +F+  +  RA MLET+AAVPGM  G+
Sbjct: 70  LDIGPNNHHKPTTLGDKAAYYTVKTLRILPDTYFRGNHYMRAAMLETIAAVPGMDVGV 127


>gi|116783028|gb|ABK22767.1| unknown [Picea sitchensis]
          Length = 347

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 39/189 (20%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 120
           D  +  R+  R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 109 DALYSERHYARFYVLETIARVPYFAFVSVLH-----MYESFGWWRRTDYLKVHFAESWNE 163

Query: 121 RMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAI 175
             HL+  ME      +W++R   F  Q +    YF+    Y++SP+ A+     +E+ A 
Sbjct: 164 LHHLL-IMEALGGNERWFDR---FLAQHIAVFYYFMTASMYILSPRMAYHFSECVEKHAY 219

Query: 176 HSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVL 216
            +Y EF+K L    ++ +PAP +A  Y+                   R P    L DV +
Sbjct: 220 STYDEFIK-LQGEELKKLPAPDVAVKYYTQGDLYLFDEFQTDRTPCSRRPKVENLYDVFV 278

Query: 217 VVRADEAHH 225
            +R DEA H
Sbjct: 279 NIRDDEAEH 287


>gi|32307546|gb|AAP79178.1| quinol-to-oxygen oxidoreductase [Bigelowiella natans]
          Length = 291

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL------LEEAEN 119
           D  F  R   R   LETVA +P +    +LH      +E  G W +A         E  N
Sbjct: 66  DSLFDGRPLERFWFLETVARMPYLSYVTMLHL-----YESFGWWRRAAAVKRVHFAEEWN 120

Query: 120 ERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 178
           E  HL+TF  +   + W  R L      V++    L +L+SP  A+     +E  A+ +Y
Sbjct: 121 EFHHLLTFEALGGDRSWATRFLAQHAAIVYYWVLVLMWLLSPTLAYNFSELIEAHAVDTY 180

Query: 179 TEFLKELDKGNIENVPAPAIATDYW--------------------RLPPNSTLKDVVLVV 218
            EF  + ++  ++ +PAP IA  YW                    R P  + L DV+  +
Sbjct: 181 GEF-ADANEELMKELPAPGIAIQYWMGGDMYLYDEFQTERRLGDERRPNITNLYDVICAI 239

Query: 219 RADEAHH 225
           R DEA H
Sbjct: 240 RDDEAEH 246


>gi|158339790|ref|YP_001520797.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
 gi|158310031|gb|ABW31647.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 226

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 134
           R  +LETVA VP      +LH            W+K    E+ NE  HL+    +   + 
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAESWNELHHLLIMESLGGAEF 83

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 194
           W +R L      +++    + Y++SP+ A+  +  +EE A  SY +FL+  +  +++ +P
Sbjct: 84  WGDRFLAKTTALIYYWVIAVLYVVSPRSAYHFMELVEEHAYASYDKFLQT-EAEHLKTLP 142

Query: 195 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           AP +A  Y+                   R P   TL DV + +R DE  H
Sbjct: 143 APDVAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEH 192


>gi|359464162|ref|ZP_09252725.1| alternative oxidase, putative [Acaryochloris sp. CCMEE 5410]
          Length = 226

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 21/170 (12%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 134
           R  +LETVA VP      +LH            W+K    E+ NE  HL+    +   + 
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAESWNELHHLLIMESLGGAEF 83

Query: 135 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 194
           W +R L      +++      Y++SP+ A+  +  +EE A  SY +FL+  +  +++ +P
Sbjct: 84  WGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVEEHAYASYDKFLQA-EAEHLKTLP 142

Query: 195 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           AP IA  Y+                   R P   TL DV + +R DE  H
Sbjct: 143 APDIAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEH 192


>gi|378706340|gb|AFC35141.1| hypothetical protein OtV6_233 [Ostreococcus tauri virus RT-2011]
          Length = 201

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 57  TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 116
            VKS     D  ++ R   R  +LETVA VP      +LH            +++   E+
Sbjct: 21  VVKSAVKVIDKVYKDRDYARFYVLETVARVPYFSFVSVLHLYETLGLWRKADYLETHFEQ 80

Query: 117 AENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEE 172
             NE  HL+   ++    ++ +R   F  Q   F  Y+L    YL SP+ A+ +   +EE
Sbjct: 81  TMNEYHHLLIMEQLGGDERFIDR---FFAQHTAFAYYWLTCLIYLASPRMAYNLSEQIEE 137

Query: 173 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 225
            A H+Y EFLK+  +  +   P P +A +Y+    N  L DV   VR DE  H
Sbjct: 138 HAYHTYDEFLKKHGENLLLERP-PIVAANYYGDVNN--LYDVFTRVRDDEGDH 187


>gi|224118168|ref|XP_002331574.1| predicted protein [Populus trichocarpa]
 gi|222873798|gb|EEF10929.1| predicted protein [Populus trichocarpa]
          Length = 362

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R  +LET+A VP      +LH      +     +IK    E+ NE  HL+
Sbjct: 125 DALYHGRDYARFYVLETIARVPYFAFISVLHLYESFGWWRRSDYIKVHFAESWNEMHHLL 184

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
              E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 185 IMEELGGNSLWFDRFLAQHMAFFYYIMTVLMYALSPRMAYHFSECVENHAFETYDKFIKA 244

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             + ++  +PAP +A  Y+                   R P    L DV L +R DEA H
Sbjct: 245 QGE-DLRKMPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNIRDDEAEH 303


>gi|427419241|ref|ZP_18909424.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
 gi|425761954|gb|EKV02807.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
          Length = 219

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  +  ++ R   R  +LETVA VP      +LH      +     W+K    E+
Sbjct: 6   VGILVFVINTVYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKVDWLKVHFAES 65

Query: 118 ENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+   E+    +W +R L   V  +++      Y ++P+ A+  +  +EE A  
Sbjct: 66  WNELHHLLIMEELGGSQQWIDRFLARHVALLYYWIIVAIYAVNPRAAYHFMELVEEHAYA 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYWR-------------LPPN------STLKDVVLV 217
           SY +FL+  ++  ++  PAP +A  Y+R              PP         L DV + 
Sbjct: 126 SYDKFLQS-NEAALKQEPAPQVAISYYRDGDLYMFDEFQTARPPTERRPQIKNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|226501174|ref|NP_001150780.1| immutans protein [Zea mays]
 gi|195641770|gb|ACG40353.1| immutans protein [Zea mays]
          Length = 343

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
           RY  R   LET+A VP      +LH  +   +     +IK    ++ NE  HL+   E+ 
Sbjct: 122 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 181

Query: 132 KPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
               W++    F  + + F  YF+    Y++SP+ A+     +E  A  +Y EFLK L +
Sbjct: 182 GDSLWFD---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHE 237

Query: 188 GNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             ++ +PAP  A +Y+                   R P    L DV + +R DEA H
Sbjct: 238 EELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFVNIREDEAEH 294


>gi|154346286|ref|XP_001569080.1| putative alternative oxidase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066422|emb|CAM44214.1| putative alternative oxidase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 486

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 103 FEHS-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
            EHS G  ++ L  + E+  +H      + +    ER LV  +Q + F  Y   +L  P+
Sbjct: 231 LEHSYGKELRGLFAQCESHSVHYQVLSCMTEITLAERGLVLLLQAIHFTIYLALFLFYPR 290

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
              R++ Y  EE+   +T+ + ++D G I  +  P +A  YW L
Sbjct: 291 MGFRLMAYTAEESSVVWTQMVNDVDLGKIAEMCVPQLALQYWGL 334


>gi|397614777|gb|EJK63007.1| hypothetical protein THAOC_16363 [Thalassiosira oceanica]
          Length = 261

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 66  DLFFQ--RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAE 118
           D FF+   R   R   LET+A VP      +LH      +E  G W     +K    E+ 
Sbjct: 57  DSFFEGEDRAYARFYALETIARVPYFSYLSVLHL-----YETLGKWRRAKYLKLHFAESW 111

Query: 119 NERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           NE  HL+   E+    ++ +R L   +   ++    L Y+++P  A+ +   +EE A  +
Sbjct: 112 NELHHLLIMEELGGSERFLDRFLAQHIAFGYYAVVILLYVLNPVQAYNLNQDVEEHAFET 171

Query: 178 YTEFLKELDKGNIENVPAPAIATDYW-----------------RLPPNSTLKDVVLVVRA 220
           Y ++LK+ ++  ++N+PAP  A DY+                 R P    L DV + +R 
Sbjct: 172 YDKYLKD-NEEKLKNLPAPKAAIDYYVDGDMYMFDEFQTGCEFRRPKIENLYDVFVAIRD 230

Query: 221 DEAHH 225
           DEA H
Sbjct: 231 DEAAH 235


>gi|224031555|gb|ACN34853.1| unknown [Zea mays]
 gi|414584889|tpg|DAA35460.1| TPA: alternative oxidase [Zea mays]
          Length = 339

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
           RY  R   LET+A VP      +LH  +   +     +IK    ++ NE  HL+   E+ 
Sbjct: 118 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 177

Query: 132 KPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
               W++    F  + + F  YF+    Y++SP+ A+     +E  A  +Y EFLK L +
Sbjct: 178 GDSLWFD---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHE 233

Query: 188 GNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             ++ +PAP  A +Y+                   R P    L DV + +R DEA H
Sbjct: 234 EELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFVNIREDEAEH 290


>gi|440684015|ref|YP_007158810.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
 gi|428681134|gb|AFZ59900.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
          Length = 228

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  +  ++ R   R  +LETVA VP      +LH      F     W+K    E+
Sbjct: 6   VGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKVHFAES 65

Query: 118 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+    +   + W +R L      +++      Y++S   A+  +  +E  A  
Sbjct: 66  WNELHHLLIMESLGGSQFWGDRILARTTALIYYWIIVALYIVSSSSAYNFMELVENHAYD 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           SY +FL E  +  ++  PAPA+A +Y+                   R P    L DV + 
Sbjct: 126 SYQKFLTE-HEAELKLQPAPAVAINYYRDGDLYMFDEFQTANSPETRRPKVDNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|302796591|ref|XP_002980057.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
 gi|300152284|gb|EFJ18927.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
          Length = 279

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 30  DRLYADRDYARFYVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNELHHLL 89

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +    +W++R L   +   ++    L Y ISP+ A+     +E+ A  +Y +F+K 
Sbjct: 90  VMEALGGDERWFDRFLAQHIAVAYYFLTSLMYTISPRMAYHFSECVEKHAFSTYDKFIKA 149

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++ +PAP +A DY+                   R P    L DV + +R DE  H
Sbjct: 150 HGE-ELKKLPAPQVAVDYYTKGDLYMFDEFQTDRLPETRRPRVDNLYDVFVNIREDEWEH 208


>gi|307109615|gb|EFN57853.1| hypothetical protein CHLNCDRAFT_143310 [Chlorella variabilis]
          Length = 289

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 17/185 (9%)

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG------GMLLHCKSLRRFEHSGGWIKAL 113
           +L  P D   +R  G R +   +V  V G+ G       +  H +S+   +   GW+   
Sbjct: 85  TLGAPADRLTERSLGKRILCFTSVGTVSGLAGKPWGRGAVFNHVRSILFNKPDNGWVHTA 144

Query: 114 LEEAENERMHLMTFMEV----AKPKWYERA--LVFAVQGVFFNAYFLGYLISPKFAHRMV 167
              AE  R H           A+P  + R   L+F  + V F      Y   P  A+   
Sbjct: 145 AANAECVRAHAGIVANTTWTPAQPPLWARLFHLMFQARVVMFLQILPVYFFLPSAAYAYD 204

Query: 168 GYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAH 224
            +  EE +  Y++ +  +  G  +   +  AP +   Y+ LP  + L+D +L +RADEA 
Sbjct: 205 AFRAEEQV--YSQAISLIGSGRFKTWKSTRAPGLGVSYYALPEGAMLRDALLRMRADEAC 262

Query: 225 HRDVN 229
              +N
Sbjct: 263 IHQLN 267


>gi|302811522|ref|XP_002987450.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
 gi|300144856|gb|EFJ11537.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
          Length = 280

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 31  DRLYADRDYARFYVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNELHHLL 90

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +    +W++R L   +   ++    L Y ISP+ A+     +E+ A  +Y +F+K 
Sbjct: 91  VMEALGGDERWFDRFLAQHIAVAYYFLTSLMYTISPRMAYHFSECVEKHAFSTYDKFIKA 150

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
             +  ++ +PAP +A DY+                   R P    L DV + +R DE  H
Sbjct: 151 HGE-ELKKLPAPQVAVDYYTKGDLYMFDEFQTDRLPETRRPRVDNLYDVFVNIREDEWEH 209


>gi|298710389|emb|CBJ25453.1| alternative oxidase, mitochondrial protein [Ectocarpus siliculosus]
          Length = 651

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 22/188 (11%)

Query: 59  KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV-GGMLLHCKSLRRFEHSGGWIKALLEEA 117
           K+L W  D+ F+ R   R   LETVA +P      ML   ++L  +  +    K    E 
Sbjct: 321 KALCWFLDVVFEDRPIQRFWFLETVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEE 380

Query: 118 ENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL     +    +W +R L      ++F+   LGYL+SP  A+     +E  A+ 
Sbjct: 381 YNEMQHLRIMESLGGDTRWSDRFLARHAAIIYFSVLILGYLVSPFLAYNFSELIESHAVD 440

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           +YTEF  E ++  ++++P    A DY+                   R P    L DV   
Sbjct: 441 TYTEF-AEANEELLKSLPPTPQALDYYHGGDMYLFDEFQTSRPAFSRRPRIQNLYDVFSC 499

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 500 IRDDELEH 507


>gi|302819116|ref|XP_002991229.1| hypothetical protein SELMODRAFT_429569 [Selaginella moellendorffii]
 gi|300140940|gb|EFJ07657.1| hypothetical protein SELMODRAFT_429569 [Selaginella moellendorffii]
          Length = 232

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWE--AYEADLSIDLKKHHAPTTFSDKMALWTV 58
           M+  YWGV   K N D GS+  WN F P E    EA++SID+ KH  P  FSD+ A   V
Sbjct: 156 MLGFYWGVCFGKPN-DVGSKI-WNSFWPSENRIIEAEVSIDINKHRNPENFSDQFARLAV 213

Query: 59  KSLRWPTDLFFQ 70
            +LR+PTDL F+
Sbjct: 214 MALRFPTDLLFR 225


>gi|90399151|emb|CAJ86080.1| H0818H01.2 [Oryza sativa Indica Group]
 gi|90399243|emb|CAJ86199.1| B0811B10.18 [Oryza sativa Indica Group]
          Length = 320

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 55  LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 96  IFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 155

Query: 115 EEAENERMHLMTFMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 170
            E+ NE  HL+   E+     W +R   F  +   F  YF+    Y++SP+ A+     +
Sbjct: 156 AESWNEFHHLLIMEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECV 212

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW---RLPPNSTLKDVVLVVRADEAHH 225
           E  A  +Y +F+K L +  ++ +PAP  A +Y+    L     L DV + +R DEA H
Sbjct: 213 ERHAYSTYDKFIK-LHEDELKKLPAPEAALNYYLNEDLYLFDNLYDVFVNIRDDEAEH 269


>gi|9837152|gb|AAG00450.1|AF274001_1 oxidase [Triticum aestivum]
          Length = 224

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 29/198 (14%)

Query: 49  FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 108
           F     ++   ++ +  D+ ++ R   R  +LET+A VP      +LH      +     
Sbjct: 26  FEQSFNVFLTDTVIFILDILYRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRAD 85

Query: 109 WIKALLEEAENERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFA 163
            IK    E+ NE  HL+  ME       W +R L  A    FF  YF+    Y++SP+ A
Sbjct: 86  NIKVHFAESMNEFHHLLI-MEALGGNSVWLDRFL--ARFSAFF-YYFVTVGMYMLSPRMA 141

Query: 164 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------R 204
           +     +E  A  +Y +FLK L+   ++ +PAP +A +Y+                   R
Sbjct: 142 YHFSECVERHAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSR 200

Query: 205 LPPNSTLKDVVLVVRADE 222
            P    L DV + VR DE
Sbjct: 201 RPKVDNLYDVFVNVRDDE 218


>gi|359359155|gb|AEV41060.1| putative immutans protein [Oryza minuta]
          Length = 346

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)

Query: 55  LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 106 IFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 165

Query: 115 EEAENERMHLMTFMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 170
            E+ NE  HL+   E+     W +R   F  +   F  YF+    Y++SP+ A+     +
Sbjct: 166 AESWNEFHHLLIMEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECV 222

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTL 211
           E  A  +Y +F+K L + +++ +PAP  A +Y+                   R P    L
Sbjct: 223 ERHAYSTYDKFIK-LHEEDLKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNL 281

Query: 212 KDVVLVVRADEAHH 225
            DV + +R DEA H
Sbjct: 282 YDVFVNIRDDEAEH 295


>gi|359359202|gb|AEV41106.1| putative immutans protein [Oryza officinalis]
          Length = 347

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)

Query: 55  LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 107 IFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 166

Query: 115 EEAENERMHLMTFMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 170
            E+ NE  HL+   E+     W +R   F  +   F  YF+    Y++SP+ A+     +
Sbjct: 167 AESWNEFHHLLIMEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECV 223

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTL 211
           E  A  +Y +F+K L + +++ +PAP  A +Y+                   R P    L
Sbjct: 224 ERHAYSTYDKFIK-LHEEDLKKLPAPEAALNYYLNDDLYLFDEFQTARVPCSRRPKIDNL 282

Query: 212 KDVVLVVRADEAHH 225
            DV + +R DEA H
Sbjct: 283 YDVFVNIRDDEAEH 296


>gi|359496713|ref|XP_002271078.2| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like,
           partial [Vitis vinifera]
          Length = 281

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 49  FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 108
           F     ++  +S+    D  +  R   R  +LET+A VP      +LH      +     
Sbjct: 103 FEQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRAD 162

Query: 109 WIKALLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 167
           ++K    E+ NE  HL+   E+     W++R L   +   ++      Y++SP+ A+ + 
Sbjct: 163 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLS 222

Query: 168 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
             +E  A  +Y +F+K      ++N+PAP IA  Y+
Sbjct: 223 ECVESHAYETYDKFIKS-QGDELKNLPAPEIAVRYY 257


>gi|115461198|ref|NP_001054199.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|21105122|gb|AAC35554.3| oxidase [Oryza sativa Japonica Group]
 gi|32488386|emb|CAE02811.1| OSJNBa0043A12.16 [Oryza sativa Japonica Group]
 gi|113565770|dbj|BAF16113.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|215695465|dbj|BAG90652.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195789|gb|EEC78216.1| hypothetical protein OsI_17850 [Oryza sativa Indica Group]
 gi|222629739|gb|EEE61871.1| hypothetical protein OsJ_16557 [Oryza sativa Japonica Group]
          Length = 336

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 27/194 (13%)

Query: 55  LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 96  IFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 155

Query: 115 EEAENERMHLMTFMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 170
            E+ NE  HL+   E+     W +R   F  +   F  YF+    Y++SP+ A+     +
Sbjct: 156 AESWNEFHHLLIMEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECV 212

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTL 211
           E  A  +Y +F+K L +  ++ +PAP  A +Y+                   R P    L
Sbjct: 213 ERHAYSTYDKFIK-LHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNL 271

Query: 212 KDVVLVVRADEAHH 225
            DV + +R DEA H
Sbjct: 272 YDVFVNIRDDEAEH 285


>gi|297745709|emb|CBI41031.3| unnamed protein product [Vitis vinifera]
          Length = 294

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 49  FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 108
           F     ++  +S+    D  +  R   R  +LET+A VP      +LH      +     
Sbjct: 103 FEQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRAD 162

Query: 109 WIKALLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 167
           ++K    E+ NE  HL+   E+     W++R L   +   ++      Y++SP+ A+ + 
Sbjct: 163 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLS 222

Query: 168 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 203
             +E  A  +Y +F+K      ++N+PAP IA  Y+
Sbjct: 223 ECVESHAYETYDKFIKS-QGDELKNLPAPEIAVRYY 257


>gi|359359056|gb|AEV40963.1| putative immutans protein [Oryza punctata]
 gi|359359107|gb|AEV41013.1| putative immutans protein [Oryza minuta]
          Length = 338

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 27/194 (13%)

Query: 55  LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 98  IFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 157

Query: 115 EEAENERMHLMTFMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 170
            E+ NE  HL+   E+     W +R   F  +   F  YF+    Y++SP+ A+     +
Sbjct: 158 AESWNEFHHLLIMEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECV 214

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTL 211
           E  A  +Y +F+K L +  ++ +PAP  A +Y+                   R P    L
Sbjct: 215 ERHAYSTYDKFIK-LHEEELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNL 273

Query: 212 KDVVLVVRADEAHH 225
            DV + +R DEA H
Sbjct: 274 YDVFVNIRDDEAEH 287


>gi|308809309|ref|XP_003081964.1| unnamed protein product [Ostreococcus tauri]
          Length = 260

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R   LETVA VP      +LH      +     ++K    E  NE  HL+
Sbjct: 7   DYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMNEYHHLL 66

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +   + W +R     V   ++      YL+SP++A+ ++  +E  A  +Y +FL E
Sbjct: 67  IMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDKFL-E 125

Query: 185 LDKGNIENVPAPAIATDYW------------------RLPPNSTLKDVVLVVRADEAHH 225
            ++  ++  PAP +A  Y+                  R P    L DV + VR DEA H
Sbjct: 126 ANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGEKGARRPKIDNLYDVFVNVRNDEAEH 184


>gi|116060431|emb|CAL55767.1| unnamed protein product, partial [Ostreococcus tauri]
          Length = 267

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R   LETVA VP      +LH      +     ++K    E  NE  HL+
Sbjct: 14  DYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMNEYHHLL 73

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +   + W +R     V   ++      YL+SP++A+ ++  +E  A  +Y +FL E
Sbjct: 74  IMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDKFL-E 132

Query: 185 LDKGNIENVPAPAIATDYW------------------RLPPNSTLKDVVLVVRADEAHH 225
            ++  ++  PAP +A  Y+                  R P    L DV + VR DEA H
Sbjct: 133 ANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGEKGARRPKIDNLYDVFVNVRNDEAEH 191


>gi|242077584|ref|XP_002448728.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
 gi|241939911|gb|EES13056.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
          Length = 351

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)

Query: 55  LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 114
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 111 IFATESMIMILDGVYRDRNYARFFVLETIARVPYFGFISVLHLYETFGWWRRADYIKVHF 170

Query: 115 EEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 170
            ++ NE  HL+   E+     W +R   F  + + F  YF+    Y++SP+ A+     +
Sbjct: 171 AQSWNEFHHLLIMEELGGNALWIDR---FLARFMAFFYYFMTVAMYMLSPRMAYHFSECV 227

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTL 211
           E  A  +Y +FLK L +  ++ +PAP  A +Y+                   R P    L
Sbjct: 228 ERHAYSTYDKFLK-LHEEELKRLPAPEAALNYYLNEDLYLFDEFQTAGVPCSRRPKIDNL 286

Query: 212 KDVVLVVRADEAHH 225
            DV + VR DEA H
Sbjct: 287 YDVFVNVRDDEAEH 300


>gi|224009886|ref|XP_002293901.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970573|gb|EED88910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 292

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 29/199 (14%)

Query: 50  SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 109
           +++ A+  +K   + T    + R   R   LET+A VP      +LH      +E  G W
Sbjct: 73  ANRFAIGFLKGTIFDTFFVGEDRAYARFYALETIARVPYFSYLSVLHL-----YETLGKW 127

Query: 110 -----IKALLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFA 163
                +K    E+ NE  HL+   E+    ++++R L       +F      YLI+P  A
Sbjct: 128 RRVKYLKLHFAESWNEMHHLLIMEELGGSERFFDRFLAQHCAFGYFLIVITLYLINPVQA 187

Query: 164 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-----------------RLP 206
           + +   +EE A  +Y  FLKE +   ++  PAP +A +Y+                 R P
Sbjct: 188 YNLNQDVEEHAFATYDTFLKE-NAEMLKTKPAPKVAIEYYRHGDMYMFDEFQTECELRRP 246

Query: 207 PNSTLKDVVLVVRADEAHH 225
             + L DV + +R DE  H
Sbjct: 247 EINNLYDVFVAIRDDEMAH 265


>gi|428315519|ref|YP_007113401.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
 gi|428239199|gb|AFZ04985.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
          Length = 237

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  ++ +  R   R  +LETVA VP      +LH      +     W+K    E+
Sbjct: 6   VGILVFAINVVYADRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKIHFSES 65

Query: 118 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+    +     W +R L  A   +++    L Y++S K A+  +  +E  A  
Sbjct: 66  WNELHHLLIMESLGGSAFWGDRLLARATALIYYWIIILVYMVSSKSAYNFMELVEGHAYA 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           SY +FL   +   ++  PAP +A  Y+                   R P    L DV + 
Sbjct: 126 SYDKFLNA-EAEALKQQPAPDVALQYYRDGDLYMFDEFQTSSANVFRRPKIDNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|449016709|dbj|BAM80111.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 467

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           ++ F+ R   R   LE VA VP      +LH        H     +A   E  NE  HL+
Sbjct: 159 EMLFRDRPIERFWFLEMVARVPYFSFLSVLHLYESLDLAHLTELRRAHFIEEWNEMHHLL 218

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +    +W +R L + V  V++ A  L Y+I+P  A+     LE+ A  +Y  F+ E
Sbjct: 219 IMQALGGDGRWLDRFLAYHVSLVYYWALVLLYMIAPAVAYNFSELLEKHAYDTYAVFI-E 277

Query: 185 LDKGNIENVPAPAIATDYWRL--------------------PPNSTLKDVVLVVRADEAH 224
            ++  +  +PAP++A  Y+                      PP +TL D  + +R DE  
Sbjct: 278 QNETLLRTLPAPSVARAYYESGERFRFRADTINAETHACEGPPVATLFDAFVNIRDDEGE 337

Query: 225 H 225
           H
Sbjct: 338 H 338


>gi|428319159|ref|YP_007117041.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
 gi|428242839|gb|AFZ08625.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
          Length = 229

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 27/184 (14%)

Query: 65  TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 124
            D+ +  R   R  MLET+A VP      +LH      +      +K    E  NE  HL
Sbjct: 16  VDVVYGNRSYPRFYMLETIARVPYFSYLSVLHLYETLGYWRKADLLKLHFAETWNELHHL 75

Query: 125 MTFMEVAKPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTE 180
           +    +   + W +R   F  Q V F  Y++    Y++ P +A+ ++  +E  A H+Y E
Sbjct: 76  LIMESLGGDRLWIDR---FIAQHVAFAYYWVVVPLYMLFPSYAYYLMELIEGHAYHTYDE 132

Query: 181 FLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRAD 221
           +LK  +   ++  PAP +A +++                   R P    L DV   +R D
Sbjct: 133 YLKTYE-AQLKAQPAPQVAINFYRDGDLYMFDEVQTALSHEFRRPKVDNLYDVFANIRDD 191

Query: 222 EAHH 225
           E  H
Sbjct: 192 EDEH 195


>gi|302830420|ref|XP_002946776.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
 gi|300267820|gb|EFJ52002.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
          Length = 437

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 27/219 (12%)

Query: 33  EADLSIDLKKHHAPTTFSD-KMALWTVK---SLRWPTDLFFQRRYGCRAMMLETVAAVPG 88
           +AD  I +++    T   D +  LW      +L W  D+ +  +   +  +LETVA +P 
Sbjct: 168 DADDVIAVERERIATGGGDMESPLWVKAPFYALCWLLDIMYDNKPIEKFWVLETVARIPY 227

Query: 89  MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV--AKPKWYERALVFAVQG 146
                +LH      F  +G  ++ +    E   MH +  ME       W +R +      
Sbjct: 228 FAYISILHLYESLGFWRAGAELRKIHFAEEWNEMHHLQIMESLGGDRAWMDRFIAEHSAV 287

Query: 147 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW--- 203
            ++    L YL+SP+ A+  +  +E  A  +YT FL+  +   +E++P P +A  Y+   
Sbjct: 288 FYYWVLILFYLVSPRMAYNFMQRVELHAADTYTAFLQR-NAAVLESIPPPMVALQYYYSE 346

Query: 204 -----------------RLPPNSTLKDVVLVVRADEAHH 225
                            R P   TL DV   +R DE  H
Sbjct: 347 DLYLFDEFQTASRGAPPRRPRCETLLDVFKNIRDDEMEH 385


>gi|1478347|gb|AAB36073.1| Aox3 [Glycine max]
          Length = 40

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 29/37 (78%)

Query: 125 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 161
           MT +E+ KP W+ER L+   QGVFFNA+F+ YL+SPK
Sbjct: 1   MTMVELVKPSWHERLLILTAQGVFFNAFFVFYLLSPK 37


>gi|428161219|gb|ACA53387.2| plastid terminal oxidase [Daucus carota]
          Length = 365

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  +  R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 131 DTLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 190

Query: 126 TFMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 182
              E+    W+    +     VF+  YF+    YL+SP+ A+     +E  A  +Y +F+
Sbjct: 191 IMEELGGNAWWFDRFLSQHIAVFY--YFMAAFMYLLSPRMAYHFSECVEHHAFETYDKFI 248

Query: 183 KELDKG-NIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADE 222
               KG +++ +PA  +A  Y+                   R P    L DV + +R DE
Sbjct: 249 NA--KGEDLKKLPASKVAIKYYTEGDMYLFDEFQTSRAPNTRRPVIDNLYDVFVNIRDDE 306

Query: 223 AHH 225
           A H
Sbjct: 307 AEH 309


>gi|75907278|ref|YP_321574.1| oxidase [Anabaena variabilis ATCC 29413]
 gi|75701003|gb|ABA20679.1| plastoquinol oxidase immutans [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  +  ++ R   R  +LETVA VP      +LH      +     W+K    E+
Sbjct: 6   VGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFAES 65

Query: 118 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+    +     W +R L      +++      Y +SP+ A+  +  +E+ A  
Sbjct: 66  WNELHHLLIMESLGGAGFWGDRFLAKTAALIYYWIIIAVYFVSPRSAYNFMELVEQHAYS 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           SY +FL    +  ++  PAP +A  Y+                   R P    L DV + 
Sbjct: 126 SYDKFLTT-HEAELKTQPAPEVAKIYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|303284211|ref|XP_003061396.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456726|gb|EEH54026.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 222

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 27/186 (14%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D  ++ R   R   LETVA VP      +LH      F     ++K    +  NE  HL+
Sbjct: 21  DKLYEGRDYSRFYALETVARVPYFSFLSVLHLYETLGFWRRADYLKVHFAQTMNEFHHLL 80

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +    K+ +R     +   ++    L YL+SP+ A+ +   +EE A H+Y  FL+E
Sbjct: 81  IMESLGGDDKFRDRFFAQHMAVGYYGIACLMYLVSPRMAYNLSEQVEEHAYHTYDVFLRE 140

Query: 185 LDKGNIENVPAPAIATDYW-------------------------RLPPNSTLKDVVLVVR 219
            ++  ++    P IA  Y+                         R P   +L DV + VR
Sbjct: 141 -NEERLKRQSPPPIAVHYYQEGDLFLFDEFQTGAVTGVARGADKRRPRIDSLYDVFVNVR 199

Query: 220 ADEAHH 225
            DEA H
Sbjct: 200 NDEAEH 205


>gi|357166646|ref|XP_003580780.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Brachypodium distachyon]
          Length = 368

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 67  LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 126
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 140 LYGDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESMNEFHHLLI 198

Query: 127 FMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLK 183
             E+          +      F+  YF+    Y++SP+ A+     +E  A  +Y +FLK
Sbjct: 199 MEELGGNSELVDRFLARFSAFFY--YFMTVAMYMLSPRMAYHFSECVERHAYSTYDKFLK 256

Query: 184 ELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAH 224
            L+   ++ +PAP  A +Y+                   R P    L DV + +R DEA 
Sbjct: 257 -LNGEELKKLPAPEAAINYYMNEDLYLFDEFQTSRVPCSRRPKVDNLYDVFVNIRDDEAE 315

Query: 225 H 225
           H
Sbjct: 316 H 316


>gi|149190030|ref|ZP_01868308.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836196|gb|EDL53155.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 57

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 43 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 92
          H      S+K+AL   K L++  +LF+ ++Y  RA++LET+AAVPGMV G
Sbjct: 8  HKKAERVSEKVALSVTKLLKYVLNLFYGKKYDKRAVILETIAAVPGMVAG 57


>gi|17229588|ref|NP_486136.1| plastoquinol terminal oxidase [Nostoc sp. PCC 7120]
 gi|17131187|dbj|BAB73795.1| oxidase [Nostoc sp. PCC 7120]
          Length = 230

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  +  ++ R   R  +LETVA VP      +LH      +     W+K    E+
Sbjct: 6   VGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFAES 65

Query: 118 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+    +     W +R L      +++      Y +SP  A+  +  +E+ A  
Sbjct: 66  WNELHHLLIMESLGGAGFWGDRFLAKTAALIYYWIIIAVYFVSPHSAYNFMEQVEQHAYS 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           SY +FL    +  ++  PAP +A  Y+                   R P    L DV + 
Sbjct: 126 SYDKFLTT-HEAELKTQPAPEVAKTYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|427728396|ref|YP_007074633.1| Alternative oxidase [Nostoc sp. PCC 7524]
 gi|427364315|gb|AFY47036.1| Alternative oxidase [Nostoc sp. PCC 7524]
          Length = 228

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 117
           V  L +  +  ++ R   R  +LETVA VP      +LH            W+K    E+
Sbjct: 6   VGILVFVINTIYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKVHFAES 65

Query: 118 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
            NE  HL+    +     W +R L      +++      Y+I+P  A+  +  +E  A +
Sbjct: 66  WNELHHLLIMENLGGAGFWGDRFLAKTTALIYYWIITALYIINPGAAYNFMELVENHAYN 125

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           SY +FL    +  ++  PAP +AT Y+                   R P    L DV + 
Sbjct: 126 SYDKFLTS-HEAELKAQPAPEVATLYYRDGDLYMFDEFQTAHNPTERRPQIENLYDVFVA 184

Query: 218 VRADEAHH 225
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|414584888|tpg|DAA35459.1| TPA: ethylene-responsive transcription factor 3 [Zea mays]
          Length = 547

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
           RY  R   LET+A VP      +LH  +   +     +IK    ++ NE  HL+   E+ 
Sbjct: 355 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 414

Query: 132 KPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
               W++    F  + + F  YF+    Y++SP+ A+     +E  A  +Y EFLK L +
Sbjct: 415 GDSLWFD---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHE 470

Query: 188 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 225
              +    P       R P    L DV + +R DEA H
Sbjct: 471 DEFQASRTPGS-----RRPKIDNLYDVFVNIREDEAEH 503


>gi|108442436|gb|ABF85789.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 33/195 (16%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 118
           D+ F+ R   R   LETVA +P       LH         S GW +A  E       E  
Sbjct: 243 DVLFENRPIQRFWFLETVARMPYFSYISCLH------LYESLGWWRAAAELRKLHFAEEW 296

Query: 119 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           NE  HL     +   + W++R + +    V++    L Y+ SP  A+     LE  A+ +
Sbjct: 297 NELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVDT 356

Query: 178 YTEFLKELDKGNIENVPAPAIATDYWRL------------------PPNSTLKDVVLVVR 219
           Y EFL + ++  ++++  P +A +Y+R                   PP   L DV   ++
Sbjct: 357 YGEFL-DANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNVTPRNPPLENLYDVFCAIK 415

Query: 220 ADEAHHRDVNHYASD 234
            DE  H    H   D
Sbjct: 416 EDEGEHVKTMHACVD 430


>gi|157782928|gb|ABV72392.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 33/195 (16%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 118
           D+ F+ R   R   LETVA +P       LH         S GW +A  E       E  
Sbjct: 243 DVLFENRPIQRFWFLETVARMPYFSYISCLH------LYESLGWWRAAAELRKIHFAEEW 296

Query: 119 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           NE  HL     +   + W++R + +    V++    L Y+ SP  A+     LE  A+ +
Sbjct: 297 NELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVDT 356

Query: 178 YTEFLKELDKGNIENVPAPAIATDYWRL------------------PPNSTLKDVVLVVR 219
           Y EFL + ++  ++++  P +A +Y+R                   PP   L DV   ++
Sbjct: 357 YGEFL-DANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNVTPRNPPLENLYDVFCAIK 415

Query: 220 ADEAHHRDVNHYASD 234
            DE  H    H   D
Sbjct: 416 EDEGEHVKTMHACVD 430


>gi|240275759|gb|EER39272.1| alternative oxidase [Ajellomyces capsulatus H143]
          Length = 103

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 177 SYTEFLKELDKG---NIENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYA 232
           +YT  +K+L+ G   N  N PAP IA  YW++P    T+ D++  +RADEA HR+VNH  
Sbjct: 2   TYTHAIKDLESGKLPNWANQPAPDIAVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTL 61

Query: 233 SDI 235
           +++
Sbjct: 62  ANL 64


>gi|145351913|ref|XP_001420304.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580538|gb|ABO98597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 245

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           +L+  R Y  R   LETVA VP      +LH      +     ++K    E  NE  HL+
Sbjct: 19  NLYGGRSYA-RFHALETVARVPYFSFMSVLHLYETFGWWRKADYLKVHFAETMNEYHHLL 77

Query: 126 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +   + W +R +   +   ++      YL+SP++A+ ++  +E  A  +Y  FL  
Sbjct: 78  IMESLGGAELWKDRFVAQHIAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDGFLNA 137

Query: 185 LDKGNIENVPAPAIATDYW------------------RLPPNSTLKDVVLVVRADEAHH 225
            ++  ++  P P++A  Y+                  R P    L DV + VR DEA H
Sbjct: 138 -NEEVLKATPPPSVAVQYYTKGDLYLFDEFQTVDRGERRPKIDNLYDVFVNVRNDEAEH 195


>gi|238013864|gb|ACR37967.1| unknown [Zea mays]
 gi|414584890|tpg|DAA35461.1| TPA: alternative oxidase [Zea mays]
          Length = 341

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 27/180 (15%)

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
           ++ R   R  +LET+A VP      +LH      +     ++K    ++ NE  HL+   
Sbjct: 117 YRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYLKVHFAQSLNEFHHLLIME 176

Query: 129 EVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
           E+     W +    F  + + F  YF+    Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 177 ELGGNAIWID---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDKFLK- 232

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           L +  ++ +PAP  A +Y+                   R P    L DV + +R DEA H
Sbjct: 233 LHEEELKTLPAPEAALNYYLNEDLYLFDEFQTTRIPCSRRPKIDNLYDVFVNIRDDEAEH 292


>gi|302837648|ref|XP_002950383.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
 gi|300264388|gb|EFJ48584.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
          Length = 468

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 35/201 (17%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 118
           D+ F  R   R   LETVA +P      +LH         S GW +A  E       E  
Sbjct: 260 DVLFNNRPIQRFWFLETVARMPYFSYISVLH------LYESFGWWRAGAELRKIHFAEEW 313

Query: 119 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           NE  HL     +   K W++R        V++      Y+ SP+ A+     +E  A+ +
Sbjct: 314 NELHHLQIMESLGGDKLWFDRFCALHAAVVYYWILLALYVFSPELAYNFSELIEAHAVDT 373

Query: 178 YTEFLKELDKGNIENVPAPAIATDYW--------------------RLPPNSTLKDVVLV 217
           Y EF+ + ++  ++++P P +A  Y+                    R PP   L DV   
Sbjct: 374 YGEFV-DANEELLKSLPPPLVAAMYYRSQDLYMFDSFQTSQPLKNPRRPPCKNLHDVFCN 432

Query: 218 VRADEAHHRDVNHYASDIHYQ 238
           +R DE  H        D   Q
Sbjct: 433 IRDDELEHVKTMRACQDATVQ 453


>gi|307109996|gb|EFN58233.1| hypothetical protein CHLNCDRAFT_12129, partial [Chlorella
           variabilis]
          Length = 216

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 40/204 (19%)

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC----------KSLRRFEHSG-- 107
           SL W  D+ +  R   R  +LETVA +P  V   +LH             LR+   S   
Sbjct: 7   SLCWALDVMYAGRPIERFWILETVARMPYFVYISMLHLYESLGWWRAGAELRKARRSSRA 66

Query: 108 ---GWIKALLEEAENERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKF 162
              G +     E  NE +H +  ME      +W +R L       ++ A  L YLISP  
Sbjct: 67  ELSGSLHVHFAEEWNE-LHHLQIMEALGGDLRWGDRFLAEHAAVFYYWALVLIYLISPAA 125

Query: 163 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW------------------- 203
           +++ +  +E  A  +Y EF  E ++  ++ +P P +A  Y+                   
Sbjct: 126 SYQFMEMVEGHAADTYAEF-AEQNRERLQAIPPPLVALAYYKSGDLYLFDQFQTSWKAAG 184

Query: 204 --RLPPNSTLKDVVLVVRADEAHH 225
             R P  + L DV + +R DE  H
Sbjct: 185 ELRRPRCNNLYDVFINIRDDELEH 208


>gi|159491010|ref|XP_001703466.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
 gi|158280390|gb|EDP06148.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
          Length = 416

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 26/172 (15%)

Query: 79  MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV--AKPKWY 136
           +LETVA +P      +LH      F  +G  ++ +    E   MH +  ME       W+
Sbjct: 219 VLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNEMHHLQIMESLGGDRAWF 278

Query: 137 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 196
           +R +       ++      YL+SP+ A+  +  +E  A  +Y+ F+ E ++  + ++P P
Sbjct: 279 DRFIAEHAAVFYYWVLIAFYLVSPRMAYNFMQRVELHAADTYSAFV-ERNRTALADIPPP 337

Query: 197 AIATDYW-----------------------RLPPNSTLKDVVLVVRADEAHH 225
            +A  Y+                       R PP   L DV   +R DE  H
Sbjct: 338 LVALQYYYSDDLYLFDEFQTASRGAPGVPPRRPPCENLLDVFTNIRDDELEH 389


>gi|452821392|gb|EME28423.1| plastid terminal oxidase [Galdieria sulphuraria]
          Length = 378

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 2/167 (1%)

Query: 56  WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 115
           W   +L    D  ++ R   R   LETVA +P      +LH      +  +G  +K    
Sbjct: 178 WIYDALCGFIDWAYKDRPVERFWFLETVARMPYFSYISVLHLYETLGWWRNGELLKIHFA 237

Query: 116 EAENERMHLMTFMEVAKP-KWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 174
           E  NE  HL+    +    KW +R +       ++    L + +SP  A+     +E  A
Sbjct: 238 EEYNEFHHLLIMESLGGDRKWLDRFVAEHAAVFYYWILVLYFFLSPSLAYNFSELVEAHA 297

Query: 175 IHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 221
           + +YTEFL + ++  ++ +P P IA  Y+         +++L V  D
Sbjct: 298 VDTYTEFL-QTNEELLKQLPPPKIAERYYLADNLYMFDEIILQVLGD 343


>gi|255086827|ref|XP_002509380.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
 gi|226524658|gb|ACO70638.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
          Length = 472

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 57/240 (23%)

Query: 33  EADLSIDLKKHHAPTTFSDKM------------ALWTVKS----LRWPTDLFF-QRRYGC 75
           EA+L  +L+   A  T S+              A W +K+    L    DL F + R   
Sbjct: 167 EAELMSELRDQLATLTLSNDAIWAREKARPEVPAPWIIKAPYLALCVFLDLVFPENRPIQ 226

Query: 76  RAMMLETVAAVPGMVGGMLL----------HCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           R   LETVA +P      +L              LRR   +  W         NE  HL+
Sbjct: 227 RFWFLETVARMPYFSYNTMLTVYELLGWWRRSSELRRVHFAEEW---------NEYHHLL 277

Query: 126 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +     W +R L F    +++ A  + +L+SP  A+     +E  A+ +Y +F +E
Sbjct: 278 IHESLGGDAAWRDRFLGFHSALLYYGALNVAWLLSPALAYNFSELIEAHAVDTYAQFAEE 337

Query: 185 LDKGNIENVPAPAIATDYWR-------------------LPPNSTLKDVVLVVRADEAHH 225
            +K  +  +PAP IA  Y+                        +TL D    +R DEA H
Sbjct: 338 -NKATLRKLPAPRIARKYYEEGDLYLFDEFQTARPRSSRRVRVTTLYDAFCAIRDDEAEH 396


>gi|412987963|emb|CCO19359.1| predicted protein [Bathycoccus prasinos]
          Length = 393

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 39/200 (19%)

Query: 58  VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKA 112
           V S  +  D  ++ R   R   LET+A VP      +LH      +E  G W     +K 
Sbjct: 82  VDSAVFVIDKLYEGRDYPRFYALETIARVPYFSFLSVLHL-----YESFGWWRRADYLKV 136

Query: 113 LLEEAENERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 170
              E  NE  HL+  ME       + +R     V  V+F    L Y++SP+ A+ +   +
Sbjct: 137 HFAETMNEYHHLL-IMEAMGGADSFKDRFFAQHVAVVYFWVAVLIYMVSPRMAYNLSEQV 195

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL------------------------- 205
           EE A  +Y +FLK  ++  ++  PA  +A  Y++L                         
Sbjct: 196 EEHAYATYDDFLKRKEE-ELKQTPACGVAVSYFQLGDLYLFDEFQTNVYEGLNKATNIRR 254

Query: 206 PPNSTLKDVVLVVRADEAHH 225
           P    + DV+  VR DE  H
Sbjct: 255 PKIKNMYDVIENVRNDELEH 274


>gi|302760829|ref|XP_002963837.1| hypothetical protein SELMODRAFT_405292 [Selaginella moellendorffii]
 gi|300169105|gb|EFJ35708.1| hypothetical protein SELMODRAFT_405292 [Selaginella moellendorffii]
          Length = 290

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 5/37 (13%)

Query: 93  MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 129
           MLLHC+SLRRFE SGG      EEAE+ER+++MT ++
Sbjct: 211 MLLHCRSLRRFEQSGG-----AEEAESERVYVMTVVQ 242


>gi|168049162|ref|XP_001777033.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671598|gb|EDQ58147.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 212

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 26/183 (14%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 125
           D+ F  R   R   LETVA +P      +LH      +   G  ++ +    E   MH +
Sbjct: 3   DVIFNDRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRIGAEVRKVHFAEEWNEMHHL 62

Query: 126 TFMEV--AKPKWYERALVFAVQGVFFNAYFLG--YLISPKFAHRMVGYLEEEAIHSYTEF 181
             ME      +W +R   FA    FF  + L   +LISPK A+     +E  A+ +Y EF
Sbjct: 63  RIMESLGGDLEWGDR--FFAQHAAFFYYWVLNLMFLISPKVAYNFSELIEMHAVDTYGEF 120

Query: 182 LKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADE 222
             + ++  ++ +P P  A +Y+                   R P  + L DV   +  DE
Sbjct: 121 -ADANEELLKTLPPPPAALEYYESEDLYMYDEFQTSQAPETRRPKINNLYDVFKAISGDE 179

Query: 223 AHH 225
             H
Sbjct: 180 LEH 182


>gi|146104475|ref|XP_001469836.1| putative alternative oxidase [Leishmania infantum JPCM5]
 gi|398024826|ref|XP_003865574.1| alternative oxidase, putative [Leishmania donovani]
 gi|134074206|emb|CAM72948.1| putative alternative oxidase [Leishmania infantum JPCM5]
 gi|322503811|emb|CBZ38897.1| alternative oxidase, putative [Leishmania donovani]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 110 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 169
           ++ LL + E+  +H      +A+    ER LV  +Q V F  Y   +L+ P+   R++ Y
Sbjct: 239 LRGLLAQCESHAVHYQVLSCMAEITLLERGLVLLLQAVHFTIYLALFLLYPRMGFRLMAY 298

Query: 170 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
             EE+   +T+ + ++D G I     P +A  YW L
Sbjct: 299 TAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 334


>gi|302782501|ref|XP_002973024.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
 gi|300159625|gb|EFJ26245.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
          Length = 255

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 24/188 (12%)

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           +L W  D+ F+ R   R   LETVA +P      +LH      +   G  ++ +    E 
Sbjct: 47  ALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEW 106

Query: 120 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYL--ISPKFAHRMVGYLEEEAI 175
             MH +  ME       W +R   F     FF  + L ++  +SPK A+     +E  A+
Sbjct: 107 NEMHHLKIMESLGGDLLWGDR--FFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAV 164

Query: 176 HSYTEFLKELDKGNIENVPAPAIATDY------------------WRLPPNSTLKDVVLV 217
            +Y +F+ E ++   +  P+P     Y                   R P   +L DV + 
Sbjct: 165 DTYGQFVDENEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFVA 224

Query: 218 VRADEAHH 225
           ++ DE  H
Sbjct: 225 IKGDEFEH 232


>gi|302805482|ref|XP_002984492.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
 gi|300147880|gb|EFJ14542.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
          Length = 255

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 24/188 (12%)

Query: 60  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
           +L W  D+ F+ R   R   LETVA +P      +LH      +   G  ++ +    E 
Sbjct: 47  ALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEW 106

Query: 120 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYL--ISPKFAHRMVGYLEEEAI 175
             MH +  ME       W +R   F     FF  + L ++  +SPK A+     +E  A+
Sbjct: 107 NEMHHLKIMESLGGDLLWGDR--FFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAV 164

Query: 176 HSYTEFLKELDKGNIENVPAPAIATDY------------------WRLPPNSTLKDVVLV 217
            +Y +F  E ++   +  P+P     Y                   R P   +L DV + 
Sbjct: 165 DTYGQFFDENEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFVA 224

Query: 218 VRADEAHH 225
           ++ DE  H
Sbjct: 225 IKGDEFEH 232


>gi|401420614|ref|XP_003874796.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322491032|emb|CBZ26296.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 484

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%)

Query: 110 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 169
           ++ LL + E+  +H      +A+    ER LV  +Q V F  Y   +L  P+   R++ Y
Sbjct: 237 LRGLLAQCESHAVHYQVLSCMAEITLLERGLVLLLQAVHFTIYLALFLFYPRMGFRLMAY 296

Query: 170 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
             EE+   +T+ + ++D G I     P +A  YW L
Sbjct: 297 TAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 332


>gi|118637020|emb|CAI77910.1| plastid terminal oxidase precursor [Guillardia theta]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 15  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 74
           + DG+ W    + P    E    +D+       T S   AL TV  L+   D ++ ++  
Sbjct: 66  RKDGTTWGSKSY-PVSTVEEPEPLDI------VTKSIAQALVTV--LKGSLDWYYHKKSD 116

Query: 75  -CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP 133
             R  +LETVA VP      +LH      +     WIK    EA+NE  HL+    +   
Sbjct: 117 FARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHHLLIMEALGGN 176

Query: 134 K-----WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 178
           K     W  +   FA        YFL     P+ AH ++  +E  A H+Y
Sbjct: 177 KEFSDRWIAQHAAFAYNWFCVTFYFL----HPRGAHNVMFLIENHAYHTY 222


>gi|157877409|ref|XP_001687022.1| putative alternative oxidase [Leishmania major strain Friedlin]
 gi|68130097|emb|CAJ09405.1| putative alternative oxidase [Leishmania major strain Friedlin]
          Length = 493

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 110 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 169
           ++ LL + E+  +H      +A+    ER+LV  +Q V F  Y   +L  P+   R++ Y
Sbjct: 246 LRGLLAQCESHAVHYQVLSCMAEITLLERSLVLLLQAVHFTIYLALFLFYPRMGFRLMAY 305

Query: 170 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 205
             EE+   +T+ + ++D G I     P +A  YW L
Sbjct: 306 AAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 341


>gi|404325818|gb|AFR58666.1| plastid terminal oxidase [Dunaliella salina]
          Length = 451

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 34/196 (17%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 118
           DL +  R   R   LETVA +P       +H         + GW +A  E       E  
Sbjct: 246 DLVYNNRPIQRFWFLETVARMPYFSYISCIH------LYETLGWWRAAAELRKIHFAEEW 299

Query: 119 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 177
           NE  HL     +   + W++R L +     ++      Y+ SPK A+     LE  A+ +
Sbjct: 300 NELHHLQIMEALGGDRLWFDRFLAYHSAIAYYWVLVGLYICSPKLAYNFSELLEAHAVDT 359

Query: 178 YTEFLKELDKGNIENVPAPAIATDYWRL-------------------PPNSTLKDVVLVV 218
           Y EF+   ++  ++++  P +A  Y+R                    P    L DV + +
Sbjct: 360 YGEFVSS-NEELLKSLEPPLVAAQYYRSPDLYMFDEFQTDISSGKRNPKCDNLYDVFVNI 418

Query: 219 RADEAHHRDVNHYASD 234
           R DEA H    +   D
Sbjct: 419 RDDEAEHVKTMNACQD 434


>gi|219129931|ref|XP_002185130.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403309|gb|EEC43262.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 531

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 75  CRAMMLETVAAVPGMVGGMLLHC-KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP 133
            R  +LETVA +P      +LH  ++L  +  S G  +    E  NE  HL+    +   
Sbjct: 228 SRFFLLETVARMPYFSYITMLHLYETLGFWRRSAGMKRIHFAEELNEFHHLLIMESLGGD 287

Query: 134 K-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 192
           + W+ R L      V++ A  L + ISP  ++R    LE  A+ +Y +FL E ++  ++ 
Sbjct: 288 QAWWVRFLAQHSAIVYYVALCLLWGISPSLSYRFSELLETHAVSTYGQFLDENEEA-LKK 346

Query: 193 VPAPAIATDYW 203
           +P P  A +Y+
Sbjct: 347 LPPPLPAIEYY 357


>gi|412985307|emb|CCO20332.1| predicted protein [Bathycoccus prasinos]
          Length = 394

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 76  RAMMLETVAAVPGMV-GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
           R   LETVA +P      ML   + L  +  S    K    E  NE  HL+    +   +
Sbjct: 123 RFWFLETVARMPYFSYTTMLTLYELLGWWRRSSELRKVHFAEEWNEYHHLLIMESLGGDR 182

Query: 135 -WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV 193
            W +R L      V++    + +L+SPK A+     +E  A+ +Y +F +E +K  +E++
Sbjct: 183 RWSDRFLAQHAALVYYFGLVVVWLLSPKLAYNFSEKIETHAVATYAQFTEE-NKELLESL 241

Query: 194 PAPAIATDYW 203
           PAP +A  Y+
Sbjct: 242 PAPEVAKKYY 251


>gi|397630744|gb|EJK69894.1| hypothetical protein THAOC_08807, partial [Thalassiosira oceanica]
          Length = 104

 Score = 43.5 bits (101), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 35  DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------FFQRRYGCRAMMLETVAAV 86
           DL I+L  H  P TF D+ AL+ VK +R   D+            +   RA+ LET+AAV
Sbjct: 37  DLDINLT-HVKPKTFLDRSALFAVKCVRTVFDIGTGWNRGEITTDKILNRAIFLETIAAV 95

Query: 87  PGMVGGML 94
           PGMV  ++
Sbjct: 96  PGMVAAVI 103


>gi|145354902|ref|XP_001421713.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581951|gb|ABP00007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 22/171 (12%)

Query: 76  RAMMLETVAAVPGM-VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 134
           R   LETVA +P      ML   + L  +  S    K    E  NE  HL+    +    
Sbjct: 53  RFWFLETVARMPYFSYTSMLTFYEILGWWRRSSELRKVHFAEEWNEYHHLLVMESLGGDA 112

Query: 135 -WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV 193
            W +R L      V++      +LISP  A+     +E  A+ +Y +F+ + +   ++++
Sbjct: 113 CWRDRFLGQHAAIVYYFVLVALWLISPALAYNFSELIEGHAVDTYGQFVDQ-NAELLKSM 171

Query: 194 PAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           PAP IA +Y+                   R P   +L DV   +R DE  H
Sbjct: 172 PAPRIAVEYYEAADLYLFDEFQTAREVRLRRPQIRSLFDVFSNIRDDEGEH 222


>gi|404325822|gb|AFR58668.1| plastid terminal oxidase [Dunaliella bardawil]
          Length = 451

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 36/197 (18%)

Query: 66  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 118
           D+ +  R   R   LETVA +P       +H         + GW +A  E       E  
Sbjct: 246 DVVYNNRPLQRFWFLETVARMPYFSYISCIH------LYETLGWWRAAAELRKIHFAEEW 299

Query: 119 NERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 176
           NE +H +  ME       W++R L +     ++      Y+ SP+ ++     LE  A+ 
Sbjct: 300 NE-LHHLQIMEALGGDCMWFDRFLAYHSAIAYYWVLVALYIFSPRLSYNFSELLEAHAVD 358

Query: 177 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 217
           +Y+EF+   ++  ++++  P +A  Y+                   R P    L DV + 
Sbjct: 359 TYSEFVSS-NEVLLKSLEPPLVAAQYYRSPDLYMFDEFQTDIKSEKRTPKCDNLYDVFVN 417

Query: 218 VRADEAHHRDVNHYASD 234
           +R DEA H    +   D
Sbjct: 418 IRDDEAEHVKTMNACQD 434


>gi|303284193|ref|XP_003061387.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456717|gb|EEH54017.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 27/194 (13%)

Query: 53  MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGM-VGGMLLHCKSLRRFEHSGGWIK 111
            AL T   L +P D   QR +      LE+VA +P      ML   + L  +  S    +
Sbjct: 35  FALCTFLDLVFPEDRPIQRFW-----FLESVARMPYFSYNTMLTLYELLGWWRRSSELRR 89

Query: 112 ALLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 170
               E  NE  HL+    +     W +R L       ++      +LISP  A+     +
Sbjct: 90  VHFAEEWNEYHHLLIMESLGGDALWRDRFLAQHAALAYYLVLIALWLISPALAYNFSELI 149

Query: 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR-------------------LPPNSTL 211
           E  A+ +Y +F  E +K  +  +PAP IA  Y+                     P   TL
Sbjct: 150 EAHAVDTYAQFADE-NKEKLRTLPAPRIARAYYENDDMYLFDEFQTARPRSSRRPRVRTL 208

Query: 212 KDVVLVVRADEAHH 225
            D    +R DE  H
Sbjct: 209 HDTFCAIRDDENEH 222


>gi|308812468|ref|XP_003083541.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116055422|emb|CAL58090.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 505

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 22/180 (12%)

Query: 67  LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL-LEEAENERMHLM 125
           LF + +   R   LETVA +P       L    +  +   G  ++ +   E  NE  HL+
Sbjct: 245 LFDETKPVQRFWFLETVARMPYYSYTAALTFYEILGWYRGGAELRKIHFAEEWNEYHHLL 304

Query: 126 TFMEVAKP-KWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 184
               +     W +R L      V++    L + +SP  A+     +E  A+ +Y +F+ +
Sbjct: 305 IMESLGGDVSWRDRFLGQHAALVYYGVLILLWFMSPALAYNFSELIEAHAVDTYAQFVDQ 364

Query: 185 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
            +   ++ +PAP IA +Y+                   R P   TL DV   +R DE  H
Sbjct: 365 -NAELLKTMPAPRIAVEYYEGADLYLFDEFQTAREVRTRRPRIRTLYDVFSNIRDDEGEH 423


>gi|14595199|gb|AAK70807.1| oxidase [Oryza sativa]
          Length = 158

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 23/106 (21%)

Query: 142 FAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 198
           F  +   F  YF+    Y++SP+ A+     +E  A  +Y +F+K L +  ++ +PAP  
Sbjct: 3   FLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIK-LHEDELKKLPAPEA 61

Query: 199 ATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 225
           A +Y+                   R P    L DV + +R DEA H
Sbjct: 62  ALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEH 107


>gi|219124647|ref|XP_002182610.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405956|gb|EEC45897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 314

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 35/185 (18%)

Query: 72  RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 131
           R   R   LET+A +P      +LH            +++    E+ NE  HL+   E+ 
Sbjct: 122 RAFARFYALETIARMPYFSYLSVLHLWETLGMWRRAEYLQVHFAESWNELHHLLIMEELG 181

Query: 132 -KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 187
              +W +R   F  Q + F  Y++    Y ++P  A+ +   +EEEA  +Y  FL +   
Sbjct: 182 GNGRWGDR---FVAQHIAFFYYWIVVTLYAVNPTMAYNLNQAVEEEAYETYDGFL-QTHA 237

Query: 188 GNIENVPAPAIATDYW---------------------------RLPPNSTLKDVVLVVRA 220
             +++ PAP  A  Y+                           R P   TL D +  +R 
Sbjct: 238 EYLQSQPAPQAAIRYYTGDDLYLFHAMHWDTRQPKEPESPVEQRRPTCETLYDTIRNIRD 297

Query: 221 DEAHH 225
           DE  H
Sbjct: 298 DELEH 302


>gi|384251652|gb|EIE25129.1| hypothetical protein COCSUDRAFT_46597 [Coccomyxa subellipsoidea
           C-169]
          Length = 487

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 43/212 (20%)

Query: 44  HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 103
           HA   F   +A  T+  +    D+ + +R   R   LE VA +P      +LH       
Sbjct: 228 HAKAPFIINVAYTTLCVV---MDVLYNKRPIQRFWFLEVVARMPYFSYISMLH------L 278

Query: 104 EHSGGWIKALLE-------EAENERMHLMTFMEVAKPK-WYERALVFAVQ--GVFFNAYF 153
             S GW +A  E       E  NE  HL     +   + W +R   FA Q   VF+    
Sbjct: 279 YESLGWWRAGAELRRIHFAEEWNELHHLQIMESLGGDQFWIDR---FAAQHAAVFYYWVI 335

Query: 154 LGYL-ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW--------- 203
           +G+   SP+ A+     +E  A+ +Y EF++E +   ++ +P P +A +Y+         
Sbjct: 336 VGFFAFSPQLAYVFSELVEGHAVDTYEEFVEE-NAELLKTLPPPVVALEYYKNGDLYLFD 394

Query: 204 ----------RLPPNSTLKDVVLVVRADEAHH 225
                     R P  + L DV   +  DE  H
Sbjct: 395 ELQTTGTDPKRRPSCNNLYDVFCNIAGDEREH 426


>gi|159468876|ref|XP_001692600.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158278313|gb|EDP04078.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 471

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAENERMHLMTFMEVAK 132
           LETVA +P      +LH         S GW +A  E       E  NE  HL     +  
Sbjct: 277 LETVARMPYFSYISMLH------LYESLGWWRAGAELRKIHFAEEWNELHHLQIMESLGG 330

Query: 133 PK-WYERALVFAVQ--GVFFNAYFLG-YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
            + W++R   FA Q   + +    LG Y+ SP+ A+     +E  A+ +Y EF+ + ++ 
Sbjct: 331 DQLWFDR---FAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFV-DANEE 386

Query: 189 NIENVPAPAIATDYWR 204
            ++++P P +A  Y+R
Sbjct: 387 LLKSLPPPLVAAVYYR 402


>gi|397605676|gb|EJK59088.1| hypothetical protein THAOC_20735 [Thalassiosira oceanica]
          Length = 695

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 66  DLFFQRRYG-CRAMMLETVAAVPGMVGGMLLHC-KSLRRFEHSGGWIKALLEEAENERMH 123
           D+ F+ R    R  +LETVA +P      +LH  +SL  +  S    +    E  NE  H
Sbjct: 360 DVVFEGRNAFSRFFLLETVARMPYFSYITMLHLYESLGFWRRSSDIKRIHFAEEWNEFHH 419

Query: 124 L--MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           L  M  M   +P W  R L       ++ A  L ++ SP  +++    LE  A+ +Y +F
Sbjct: 420 LLIMESMGGDQPYWV-RFLAQHSAVAYYVALCLLWIASPSLSYKFSEMLETHAVDTYGQF 478

Query: 182 LKELDKGNIENVPAPAIATDYWRL 205
           + E ++  ++ +P   +A +Y+ +
Sbjct: 479 VDE-NESKLKELPPSLVAVEYYTI 501


>gi|388491666|gb|AFK33899.1| unknown [Lotus japonicus]
          Length = 50

 Score = 38.9 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/18 (83%), Positives = 18/18 (100%)

Query: 216 LVVRADEAHHRDVNHYAS 233
           +VVRA+EAHHRDVNH+AS
Sbjct: 1   MVVRANEAHHRDVNHFAS 18


>gi|260436099|ref|ZP_05790069.1| plastoquinol oxidase [Synechococcus sp. WH 8109]
 gi|260413973|gb|EEX07269.1| plastoquinol oxidase [Synechococcus sp. WH 8109]
          Length = 211

 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 76  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA----ENERMHLMTFMEV- 130
           RA  LE +A           H       + SG  I+  LE A     NE+ H   F    
Sbjct: 37  RAASLEIIARTAYTAEESACHYLETIGLDQSGA-IRKTLELARRQDSNEQTHEDIFSRDL 95

Query: 131 -AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 189
                W +R +   V  + +  + L  L+  + A  +   +E EA+ +Y   L E  +G 
Sbjct: 96  GGLSLWIDRFVARHVAVLVYWIFALTTLLDHELASLLGEAVEAEAVKTYRRMLLEQPEGW 155

Query: 190 IENVPAPAIATDYWRLPPN----------STLKDVVLVVRADEAHHRDVN 229
           ++  P   IAT YWR   N           TL+DV+ ++  DE  H   N
Sbjct: 156 LQQ-PVTPIATAYWRKEGNMWAARDEREPETLRDVIELIARDELDHVAAN 204


>gi|58259693|ref|XP_567259.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57229309|gb|AAW45742.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1400

 Score = 38.1 bits (87), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 18/140 (12%)

Query: 100  LRRFEHSGGWIKALLEEAENERMHLMTFM-EVAKPKWYERALVFAVQ-GVFFNAYF--LG 155
            ++    S GW + L    E + M L TF+   AK +  E+AL++  Q GVF   ++  LG
Sbjct: 990  VKDLSCSSGWKRTLYAVIELKWMKLATFLIGEAKRQTDEKALIYLCQEGVFQTMWYIILG 1049

Query: 156  YLIS---------PKFAHRMVGYLEEEAIHSYTEFLKELDKG-NIENVPAPAIATDYWRL 205
            Y IS          ++ +R+V YL  ++         E D G ++E +   A   D+W  
Sbjct: 1050 YAISGCIFGLSIVNEYFYRVV-YLYRDSTPDIPVLALEADNGYSVEEL---AELQDFWSS 1105

Query: 206  PPNSTLKDVVLVVRADEAHH 225
            PPN  + D    +   EA +
Sbjct: 1106 PPNCLISDRANAILNKEARY 1125


>gi|33865421|ref|NP_896980.1| plastoquinol terminal oxidase [Synechococcus sp. WH 8102]
 gi|33632590|emb|CAE07402.1| possible oxidase [Synechococcus sp. WH 8102]
          Length = 207

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 17/138 (12%)

Query: 108 GWIKALLEEAE----NERMHLMTFMEVAK--PKWYERALVFAVQGVFFNAYFLGYLISPK 161
           G I+  LE A     NE+ H   F         W +R L   +  V +  + +  LI  +
Sbjct: 64  GTIRDTLELARYQDTNEQTHEDIFARDLDGLKNWGDRFLARHIAVVIYWVFAITTLIDHE 123

Query: 162 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN----------STL 211
            A  +   +E EA+ +Y   LKE  +  ++  PA   AT YW  P +           ++
Sbjct: 124 MAALLGEAVEVEAVKTYRRMLKEQPEEWLDQ-PAAPTATHYWEKPNSMWRVRGDHMPGSM 182

Query: 212 KDVVLVVRADEAHHRDVN 229
           +DVV  +  DEA H   N
Sbjct: 183 RDVVEAIVRDEADHVKAN 200


>gi|20149254|gb|AAM12876.1|AF494290_1 quinol-to-oxygen oxidoreductase [Chlamydomonas reinhardtii]
          Length = 471

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 80  LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAENERMHLMTFMEVAK 132
           LETVA +P      +LH         S GW +A  E       E  NE  HL     +  
Sbjct: 277 LETVARMPYFSYISMLH------LYESLGWWRAGAELRKIHFAEEWNELHHLQIMESLGG 330

Query: 133 PK-WYERALVFAVQ--GVFFNAYFLG-YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
            + W++R   FA Q   + +    LG Y+ SP+ A+     +E  A+ +Y EF  + ++ 
Sbjct: 331 DQLWFDR---FAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFW-DANEE 386

Query: 189 NIENVPAPAIATDYWR 204
            ++++P P +A  Y+R
Sbjct: 387 LLKSLPPPLVAAVYYR 402


>gi|224014510|ref|XP_002296917.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968297|gb|EED86645.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 636

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 32/190 (16%)

Query: 66  DLFFQRRYG-CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL-LEEAENERMH 123
           D+ F+ R    R  +LETVA +P      +LH      F      IK +   E  NE  H
Sbjct: 289 DVVFEGRNPFSRFFLLETVARMPYFSYITMLHLYETMGFWRRSSDIKRIHFAEEWNEFHH 348

Query: 124 LMTFMEVA--KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           L+    +   +P W  R +       ++ A  + +++SP  +++    LE  A+ +Y +F
Sbjct: 349 LLIMESLGGDQPYWV-RLMAQHSALAYYIALCMLWMLSPTLSYKFSEMLETHAVDTYGQF 407

Query: 182 LKELDKGNIENVPAPAIATDYW------------------------RLPPNS--TLKDVV 215
           + E ++  ++ +P    A +Y+                        R+P  +  +L DV 
Sbjct: 408 VDE-NEDKLKELPPSIAAVEYYTVGVSDPMFGEYQTASVSDPNRRVRVPGTNLRSLYDVF 466

Query: 216 LVVRADEAHH 225
           + +R DE  H
Sbjct: 467 VAIRNDEGDH 476


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,295,794,644
Number of Sequences: 23463169
Number of extensions: 176814987
Number of successful extensions: 352492
Number of sequences better than 100.0: 704
Number of HSP's better than 100.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 351235
Number of HSP's gapped (non-prelim): 763
length of query: 252
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 113
effective length of database: 9,097,814,876
effective search space: 1028053080988
effective search space used: 1028053080988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)