Query 025472
Match_columns 252
No_of_seqs 136 out of 362
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 11:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4am5_A Bacterioferritin; metal 79.1 2.7 9.4E-05 33.5 5.1 120 74-230 11-135 (159)
2 1o9i_A Pseudocatalase; oxidore 73.7 11 0.00037 34.0 7.9 126 78-228 24-184 (266)
3 2v8t_A Manganese-containing ps 70.5 2.8 9.6E-05 38.5 3.3 127 78-228 25-191 (302)
4 3k6c_A Uncharacterized protein 67.0 5 0.00017 31.2 3.6 37 171-228 30-66 (95)
5 2hz8_A De novo designed DIIRON 63.0 4.4 0.00015 32.5 2.7 31 206-239 58-88 (115)
6 2oh3_A Rubrerythrin, COG1633: 58.9 12 0.0004 30.0 4.7 105 109-235 38-148 (167)
7 1zpy_A Hypothetical protein NE 58.8 9.3 0.00032 29.6 3.8 37 171-228 30-66 (95)
8 1vjx_A Putative ferritin-like 56.2 13 0.00046 29.5 4.5 99 108-228 42-148 (157)
9 2fzf_A Hypothetical protein; s 52.2 12 0.00041 30.0 3.6 100 108-235 49-160 (175)
10 1vjx_A Putative ferritin-like 45.7 21 0.00072 28.3 4.1 45 166-232 21-65 (157)
11 2fkz_A Bacterioferritin; ferro 44.4 18 0.00062 27.5 3.4 88 110-228 40-133 (155)
12 3pwf_A Rubrerythrin; non heme 44.3 71 0.0024 26.3 7.3 117 75-242 12-133 (170)
13 1j30_A 144AA long hypothetical 43.9 25 0.00087 27.5 4.3 121 74-231 13-135 (144)
14 2fzf_A Hypothetical protein; s 41.9 47 0.0016 26.4 5.7 48 165-233 26-73 (175)
15 2oh3_A Rubrerythrin, COG1633: 37.4 47 0.0016 26.4 5.0 51 164-232 10-60 (167)
16 1jm0_A Protein (four-helix bun 34.3 31 0.0011 23.2 2.9 34 169-227 9-42 (50)
17 4etr_A Putative uncharacterize 33.1 33 0.0011 27.4 3.4 46 168-234 105-150 (153)
18 2b7e_A PRE-mRNA processing pro 26.4 90 0.0031 22.0 4.3 33 172-222 3-36 (59)
19 2e0z_A Virus-like particle; ba 25.6 15 0.0005 34.1 0.0 45 164-229 24-68 (345)
20 3b5o_A CADD-like protein of un 22.3 4.1E+02 0.014 23.5 9.0 51 148-205 123-178 (244)
21 3fbi_B Mediator of RNA polymer 21.2 77 0.0026 25.8 3.4 15 168-182 50-64 (130)
22 3bqz_B HTH-type transcriptiona 20.5 1.1E+02 0.0037 23.0 4.1 63 77-145 22-85 (194)
No 1
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=79.15 E-value=2.7 Score=33.52 Aligned_cols=120 Identities=20% Similarity=0.011 Sum_probs=75.8
Q ss_pred cceeeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHH
Q 025472 74 GCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVF 148 (252)
Q Consensus 74 ~~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf 148 (252)
+++.+-.|..|..=|+..+.+. . -+.-.|.-+.+.++|.+|+.|...|++.- .|..-..--
T Consensus 11 LN~~l~~El~A~~~Y~~~a~~~--~----~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~-------- 76 (159)
T 4am5_A 11 LNRGLRSELTAVSQYWLHYRML--E----DWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP-------- 76 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--H----HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--h----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccc--------
Confidence 3455566777776676655432 1 11122555677889999999999888752 243210000
Q ss_pred HHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 149 ~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
.-..-++.-+..-.--.|.+++..|.++++.-++ -.|...+|++..|-.||.+|.+.
T Consensus 77 -----~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~------------------~~D~~t~~~l~~il~eEeeH~~~ 133 (159)
T 4am5_A 77 -----LRIGQTVKEVLESDLAAEREARALYQEGAAYAAS------------------VGDFPSKNLFEELMGDEEHHIDF 133 (159)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 0001244555555556788999999998876532 34677899999999999999764
Q ss_pred hh
Q 025472 229 NH 230 (252)
Q Consensus 229 NH 230 (252)
=-
T Consensus 134 l~ 135 (159)
T 4am5_A 134 LE 135 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=73.73 E-value=11 Score=34.01 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=77.9
Q ss_pred eeeehhccCChhHHHHHHHhhhhhccccCcchH-HHHHHH-HHhHHHHHHHHHHHh----C--CchHHHHH-----HHHH
Q 025472 78 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI-KALLEE-AENERMHLMTFMEVA----K--PKWYERAL-----VFAV 144 (252)
Q Consensus 78 ~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI-~~lleE-aeNErmHLl~~~el~----~--p~~~~R~l-----v~~~ 144 (252)
.++|-++|.=|=-.++++-|.--..++.+ -+ +.||.. +--|..|+.++-++- + |.-..... ....
T Consensus 24 ~L~e~~GG~~GElsAamqYl~Q~~~~~~~--~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~~~~a~~~p~~~~~~ 101 (266)
T 1o9i_A 24 RLQESLGGQWGETTGMMSFLSQGWASTGA--EKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTM 101 (266)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcchhhcccchhhHhhh
Confidence 36777887777666777777776666653 34 555544 588889988766552 2 21122210 0000
Q ss_pred HHHHHHH-HHH------------------HHHh---ChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHh
Q 025472 145 QGVFFNA-YFL------------------GYLI---SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 202 (252)
Q Consensus 145 Q~vf~~~-~~~------------------~Ylv---sPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Y 202 (252)
.+ .|. +++ .|+. .+...-+-+=-.|..|..+|.+.++.+
T Consensus 102 ~g--~n~~~~~~~g~g~~p~ds~G~pWt~~yv~~~Gdl~aDL~~niaaE~~Ar~~Y~rl~~~t----------------- 162 (266)
T 1o9i_A 102 AG--MDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMT----------------- 162 (266)
T ss_dssp HH--SCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred cC--CChHHHHhcCCCCCccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 00 010 111 1332 244444445556899999999999887
Q ss_pred hCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 203 WRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 203 w~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
+|-..+|++..|+.||..|...
T Consensus 163 ----dDp~vkd~L~fLi~RE~~H~~~ 184 (266)
T 1o9i_A 163 ----EDEGVRDMLKFLLARETQHQLQ 184 (266)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CChhHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999765
No 3
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=70.52 E-value=2.8 Score=38.52 Aligned_cols=127 Identities=12% Similarity=0.026 Sum_probs=79.1
Q ss_pred eeeehhccCChhHHHHHHHhhhhhccccCcc--hHHHHHHH-HHhHHHHHHHHHHHh-------CCchHH----------
Q 025472 78 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGG--WIKALLEE-AENERMHLMTFMEVA-------KPKWYE---------- 137 (252)
Q Consensus 78 ~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~g--wI~~lleE-aeNErmHLl~~~el~-------~p~~~~---------- 137 (252)
.++|-++|.=|=-.++++-|.--..++..++ -++.||.. +--|..|+-++-++- .|...+
T Consensus 25 ~L~eq~GG~~GElsAamqYl~Qs~~~~~~~~~~~~~dLL~dIatEEL~HlEmvat~I~~L~~Ga~~~~~~~~~~~~~~p~ 104 (302)
T 2v8t_A 25 AVQALLGGRFGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPASTPL 104 (302)
T ss_dssp HHTHHHHSTTSHHHHHHHHHHHHHHCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCCCCCCCCGGGCTT
T ss_pred HHHHHhCCCccHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCChhhhhcccccccchH
Confidence 3678888887766777777777767775532 36666555 588889987765542 111111
Q ss_pred -H--------HHHHHHH--------HHHHHHHHHHHHh---ChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCH
Q 025472 138 -R--------ALVFAVQ--------GVFFNAYFLGYLI---SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 197 (252)
Q Consensus 138 -R--------~lv~~~Q--------~vf~~~~~~~Ylv---sPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~ 197 (252)
+ ..+...+ |+.| ...|+. .+..--+-+=-.|..|..+|.+.++.+
T Consensus 105 ~~a~~~~~~~~~i~~g~g~~p~ds~G~pW---ta~Yv~~~Gdl~aDL~~NiaAE~~Ar~~Y~rL~~~t------------ 169 (302)
T 2v8t_A 105 GFAKDVRNAAHFIAGGANSLVMGAMGEHW---NGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMT------------ 169 (302)
T ss_dssp GGGGGSSCSHHHHTSSSCCCSBCTTSCBC---BGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHhhhcCCcHHHhhcCCCCCccCCCCCCC---CcchhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 1 0110000 0011 111222 234444555556999999999999887
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 198 IATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 198 iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
+|-..+|++..|+.||..|...
T Consensus 170 ---------dDp~vkd~L~fLi~RE~~H~~~ 191 (302)
T 2v8t_A 170 ---------DNPVAREMIGYLLVRGGVHAAA 191 (302)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CChhHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999765
No 4
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=67.02 E-value=5 Score=31.16 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 171 EEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
|-||+.-|.+.+... +|.-++.|+.-||.||-.|.--
T Consensus 30 EleAI~~Y~q~a~~~---------------------~d~~~k~vl~~i~~EEkeH~g~ 66 (95)
T 3k6c_A 30 ELEAVDLYNQRVNAC---------------------KDKELKAILAHNRDEEKEHAAM 66 (95)
T ss_dssp HHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 558999999998885 4577999999999999999653
No 5
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=63.00 E-value=4.4 Score=32.47 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHhhhhHhHhhhhhcccccccc
Q 025472 206 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239 (252)
Q Consensus 206 p~~atlrDvi~~IRaDEa~Hr~vNH~~ad~~~~~ 239 (252)
-++.--+++|.-||.||..| ++.|..+..+|
T Consensus 58 AP~ee~k~iI~eIr~DE~rH---~~~F~~lY~TG 88 (115)
T 2hz8_A 58 ARNPEKRQVIDKILEDEEKH---IEWLKAASKQG 88 (115)
T ss_dssp CCCTTTTTTHHHHHHHHHHH---HHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 45677889999999999999 55666665544
No 6
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8
Probab=58.86 E-value=12 Score=29.97 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=69.4
Q ss_pred hHHHH-HHHHHhHHHHHHHHHHHhC----CchHHHHHHH-HHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHH
Q 025472 109 WIKAL-LEEAENERMHLMTFMEVAK----PKWYERALVF-AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 182 (252)
Q Consensus 109 wI~~l-leEaeNErmHLl~~~el~~----p~~~~R~lv~-~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l 182 (252)
-++.+ ..-|.-|+.|..++.++.+ |+. .+.-+. ...-..--...+-.+.++..+-++.--.|.+|+..|++..
T Consensus 38 ~~k~~f~~LA~eE~~H~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~E~~a~~fY~~~a 116 (167)
T 2oh3_A 38 DTATVFRDMARFSTLHGDEIKQRSRALELPKL-MSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAA 116 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC-CGGGTSCCCCCCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccccccCCCcHhhhhHhhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554 5579999999999999952 211 000000 0000000001223556788899999999999999999997
Q ss_pred HHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhcccc
Q 025472 183 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235 (252)
Q Consensus 183 ~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ad~ 235 (252)
+.. +|...++++..|-.||..|.+.=...-+.
T Consensus 117 ~~~---------------------~d~~~k~~~~~la~eE~~H~~~l~~~~~~ 148 (167)
T 2oh3_A 117 ANS---------------------ADPEVKRLGADFAAEEAEHVVALDKWIEK 148 (167)
T ss_dssp HHC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 45778999999999999998875555443
No 7
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=58.83 E-value=9.3 Score=29.61 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 171 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 171 EEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
|-+|+.-|.+..... +|.-++.|+.-||++|..|.--
T Consensus 30 EleAI~~Y~q~A~~t---------------------~D~evk~vl~~iadEEkeH~g~ 66 (95)
T 1zpy_A 30 ELEAVDLYNQRVNAC---------------------KDKELKAILAHNRDEEKEHAAM 66 (95)
T ss_dssp HHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 557888888887764 5678999999999999999754
No 8
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Probab=56.21 E-value=13 Score=29.47 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=63.7
Q ss_pred chHHHHHH-HHHhHHHHHHHHHHHhCC-chHHHHHHH---HHH-HHHHH--HHHHHHHhChhhHhhhhhhhhhhHHHHHH
Q 025472 108 GWIKALLE-EAENERMHLMTFMEVAKP-KWYERALVF---AVQ-GVFFN--AYFLGYLISPKFAHRMVGYLEEEAIHSYT 179 (252)
Q Consensus 108 gwI~~lle-EaeNErmHLl~~~el~~p-~~~~R~lv~---~~Q-~vf~~--~~~~~YlvsPr~ahrfvgylEEeAv~tYt 179 (252)
.-++.+|. =|+-|..|..+|.++..- .+-... .. ... .+|.. ..-..+..++..+.++.--.|.+|+..|.
T Consensus 42 ~~~k~lF~~LA~eE~~H~~~l~~l~~~~~~~~~~-~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~ 120 (157)
T 1vjx_A 42 GEIKKTFLELADQERIHAEIFRKMSDQENWDEVD-SYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYY 120 (157)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-CBCCSBCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHH-HHHHhhhhhhccchhhhhhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 44665554 599999999999998521 110000 00 000 00000 00000223467888999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 180 ~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
+..+.+ +|...+.++..|-+||..|...
T Consensus 121 ~~a~~~---------------------~d~~~k~l~~~la~eE~~H~~~ 148 (157)
T 1vjx_A 121 ELKDGL---------------------VNSDAQKTVKKIIDQEKEHLRK 148 (157)
T ss_dssp HHHHHC---------------------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 999986 2467899999999999999753
No 9
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=52.15 E-value=12 Score=30.03 Aligned_cols=100 Identities=14% Similarity=-0.009 Sum_probs=64.3
Q ss_pred chHHHH-HHHHHhHHHHHHHHHHHhC------CchHHHHHHHHHHHHHHHHHH-----HHHHhChhhHhhhhhhhhhhHH
Q 025472 108 GWIKAL-LEEAENERMHLMTFMEVAK------PKWYERALVFAVQGVFFNAYF-----LGYLISPKFAHRMVGYLEEEAI 175 (252)
Q Consensus 108 gwI~~l-leEaeNErmHLl~~~el~~------p~~~~R~lv~~~Q~vf~~~~~-----~~YlvsPr~ahrfvgylEEeAv 175 (252)
.-++.+ .+-|+.|+.|...|.++.+ |..-.+ .-+|- .+. +-...++..+-+..--.|.+|+
T Consensus 49 ~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~L~~ai~~E~~a~ 121 (175)
T 2fzf_A 49 EALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPK------EHIGP-ELQPVARELEKVQDIIDLIRWAMKAEEIAA 121 (175)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCS------CCBSC-CCCCCCSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh------hhhhh-hhhhhHHhccccCCHHHHHHHHHHHHHHHH
Confidence 346555 4569999999999888841 100000 00000 000 0111245667777888899999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhcccc
Q 025472 176 HSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 235 (252)
Q Consensus 176 ~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ad~ 235 (252)
..|.++.+.. +|...++++..|-.||..|.+.=-.+-+.
T Consensus 122 ~~Y~~~a~~~---------------------~d~~~r~l~~~ia~eE~~H~~~l~~~l~~ 160 (175)
T 2fzf_A 122 EFYLKLEEMV---------------------KEEEKKRLMRYLADMERGHYYTLRAEYEL 160 (175)
T ss_dssp HHHHHHHHTS---------------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 24568899999999999998765444433
No 10
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Probab=45.66 E-value=21 Score=28.29 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=34.9
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhc
Q 025472 166 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232 (252)
Q Consensus 166 fvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ 232 (252)
..--.|+++...|..+.+ . .+..++++|..+..+|..|++.=..+
T Consensus 21 ~Ai~~E~~~~~~Y~~lA~-~---------------------~~~~~k~lF~~LA~eE~~H~~~l~~l 65 (157)
T 1vjx_A 21 VAIRLEEEGERFYRELSE-H---------------------FNGEIKKTFLELADQERIHAEIFRKM 65 (157)
T ss_dssp HHHHHHHHHHHHHHHHTT-S---------------------CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-c---------------------CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334568999999988766 4 24678999999999999999874433
No 11
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=44.39 E-value=18 Score=27.54 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=60.2
Q ss_pred HHHHH-HHHHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHH
Q 025472 110 IKALL-EEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183 (252)
Q Consensus 110 I~~ll-eEaeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~ 183 (252)
++..| +++.+|+.|...+.+.. .|..-. + .. + -.--++.-+.+..--.|+.++..|.++++
T Consensus 40 l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~--~---~~-~-------~~~~~~~e~l~~~l~~E~~~~~~~~~~~~ 106 (155)
T 2fkz_A 40 LGKHEYHESIDEMKHADKLIKRILFLEGLPNLQE--L---GK-L-------LIGEHTKEMLECDLKLEQAGLPDLKAAIA 106 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC--C---CC-C-------CCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C---CC-C-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655 89999999999988763 343221 0 00 0 00125666666666778889999999887
Q ss_pred HhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 228 (252)
Q Consensus 184 ~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v 228 (252)
..++ ..|...+|++..+-.||.+|...
T Consensus 107 ~a~~------------------~~D~~t~~~l~~~~~eee~h~~~ 133 (155)
T 2fkz_A 107 YCES------------------VGDYASRELLEDILESEEDHIDW 133 (155)
T ss_dssp HHHH------------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------------cCCHHHHHHHHHHHHHHHHHHHH
Confidence 6532 24677899999999999999653
No 12
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.29 E-value=71 Score=26.31 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=71.0
Q ss_pred ceeeeeehhccCChhHHHHHHHhhhhhccccCc-chHH-HHHHHHHhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 025472 75 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSG-GWIK-ALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 152 (252)
Q Consensus 75 ~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~-gwI~-~lleEaeNErmHLl~~~el~~p~~~~R~lv~~~Q~vf~~~~ 152 (252)
++++--|+-|+.=|+.++.. -++.| .-|. ...+.|+||+.|-..+.+..+.
T Consensus 12 ~~afagEs~A~~~Y~~~A~~--------A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~------------------- 64 (170)
T 3pwf_A 12 EEAFAGESMAHMRYLIFAEK--------AEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGK------------------- 64 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 34445566666666665553 23332 2254 4567799999999988886532
Q ss_pred HHHHHhChhhHhhhhhhhh--h-hHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 025472 153 FLGYLISPKFAHRMVGYLE--E-EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 229 (252)
Q Consensus 153 ~~~YlvsPr~ahrfvgylE--E-eAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vN 229 (252)
+ +.+.=+|-.-++ . |....|-+|++.-.. -.+....+.|..|..||..|.+-=
T Consensus 65 -----i-~~t~enL~~a~~gE~~e~~~mY~~~a~~A~e------------------eg~~~~a~~f~~i~~~E~~H~~~~ 120 (170)
T 3pwf_A 65 -----L-GKTPENLQMGIEGETFEVEEMYPVYNKAAEF------------------QGEKEAVRTTHYALEAEKIHAELY 120 (170)
T ss_dssp -----C-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----C-CChHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 233333333332 2 345567676665322 234567789999999999999877
Q ss_pred hhccccccccccc
Q 025472 230 HYASDIHYQGRQL 242 (252)
Q Consensus 230 H~~ad~~~~~~~~ 242 (252)
-.+.+...+|...
T Consensus 121 ~~~l~~l~~~~~~ 133 (170)
T 3pwf_A 121 RKAKEKAEKGEDI 133 (170)
T ss_dssp HHHHHHHTTTCCC
T ss_pred HHHHHHHhcCCcC
Confidence 7766666665544
No 13
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=43.90 E-value=25 Score=27.45 Aligned_cols=121 Identities=12% Similarity=-0.029 Sum_probs=71.5
Q ss_pred cceeeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHH
Q 025472 74 GCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP-KWYERALVFAVQGVFFNAY 152 (252)
Q Consensus 74 ~~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~~p-~~~~R~lv~~~Q~vf~~~~ 152 (252)
+++.+-.|+-|..=|+..+...-= +.-.+.-+.+.++|.+|+.|-+.+.+...- +... + .+. +-
T Consensus 13 Ln~a~~~E~~A~~~Y~~~A~~a~~------~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg~---p--~~~--~p-- 77 (144)
T 1j30_A 13 LKQGFIGESMANRRYLYFAKRADE------EGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTD---P--ATD--KP-- 77 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC---T--TTS--CB--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---C--CcC--CC--
Confidence 345556666666666665543111 111255567788999999999987665310 0000 0 000 00
Q ss_pred HHHHHhChhhHhhhhhhhhhhH-HHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhh
Q 025472 153 FLGYLISPKFAHRMVGYLEEEA-IHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHY 231 (252)
Q Consensus 153 ~~~YlvsPr~ahrfvgylEEeA-v~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~ 231 (252)
+=+++-.....--.|.++ ...|..+++.-++ ..|...+++|..|-.||..|.+.=-+
T Consensus 78 ----~~~~~e~L~~al~~E~~~~~~~y~~~~~~A~~------------------egd~~~~~~f~~i~~~E~~H~~~~~~ 135 (144)
T 1j30_A 78 ----IGTLEQMIESAIAGETYEWTQMYPGFAKVARE------------------EGFPEVAEWFETLARAEKSHAEKFQN 135 (144)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------cCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124455555555567778 5888888776432 33566789999999999999765433
No 14
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=41.87 E-value=47 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=37.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhcc
Q 025472 165 RMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 233 (252)
Q Consensus 165 rfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~a 233 (252)
+..--.|.+|+..|+.+.+.. .+..++++|..+..+|..|.+.=..+.
T Consensus 26 ~~A~~~E~~a~~~Y~~~A~~~---------------------~~~~~~~~f~~lA~~E~~H~~~l~~~~ 73 (175)
T 2fzf_A 26 GMAIKAEIGAREFYKSLAEKI---------------------KIEALKEKINWLAEEEKKHEALLRKLY 73 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC---------------------CCTTHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446899999999888764 236789999999999999998755443
No 15
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8
Probab=37.43 E-value=47 Score=26.37 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=37.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhc
Q 025472 164 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 232 (252)
Q Consensus 164 hrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ 232 (252)
.+..--.|++|...|..+.+..+. ..+..++++|..+..||..|++.=..+
T Consensus 10 L~~Ai~~E~~~~~~Y~~lA~~~~~------------------~~~~~~k~~f~~LA~eE~~H~~~l~~~ 60 (167)
T 2oh3_A 10 LAHAIALETEAAERYVELADMMEA------------------HNNLDTATVFRDMARFSTLHGDEIKQR 60 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445799999999998883211 224578999999999999999874444
No 16
>1jm0_A Protein (four-helix bundle model); alpha-helical bundle, protein design, de novo protein; 1.70A {Synthetic} SCOP: k.8.1.1 PDB: 1jmb_A 1ovu_A 1ovv_A 1lt1_A 1ec5_A 1nvo_A 1ovr_A 2kik_A 1u7j_A 1y47_A 1mft_A 1u7m_A
Probab=34.27 E-value=31 Score=23.21 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=27.8
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHh
Q 025472 169 YLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 227 (252)
Q Consensus 169 ylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~ 227 (252)
-+|.+|+..|.+.++- .=||+|..|-.||-+|-+
T Consensus 9 ~~E~~~i~~l~eai~~-------------------------vsr~lle~iL~dEEeH~d 42 (50)
T 1jm0_A 9 KLELQAIKQYREALEY-------------------------VKLPVLAKILEDEEKHIE 42 (50)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHH
Confidence 3688899888887776 336999999999999975
No 17
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=33.13 E-value=33 Score=27.37 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=36.9
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhccc
Q 025472 168 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 234 (252)
Q Consensus 168 gylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ad 234 (252)
..-|+.|+..|.+.|++ +-+.+.+.+|..+++++-.|.+..+.+-|
T Consensus 105 ~~gE~~~~~~Y~~al~~---------------------~lp~~~r~ll~~q~~~~~~~~d~~~~Lr~ 150 (153)
T 4etr_A 105 ERGEDVAKHRYQAALEK---------------------SLPAEIHQVIERQYQGVLRHHDRVRALRD 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHS---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34488999999999984 12356789999999999999998887755
No 18
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.44 E-value=90 Score=21.99 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHH-Hhhh
Q 025472 172 EEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV-RADE 222 (252)
Q Consensus 172 EeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~I-RaDE 222 (252)
|||...+.++|++. +.+++.|+--++..| -.|.
T Consensus 3 eEae~aF~~lL~~~------------------~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKEN------------------QVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHT------------------TCCSSCCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHc------------------CCCCCCcHHHHHHHhccCCC
Confidence 78999999999997 457778888888877 4554
No 19
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}
Probab=25.60 E-value=15 Score=34.13 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 025472 164 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 229 (252)
Q Consensus 164 hrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vN 229 (252)
.|+.=-.|.+|+.-|.+..+.. +|..++.++..|+.||..|...-
T Consensus 24 ir~ai~~E~eAi~~Y~q~A~~~---------------------~d~~~K~vl~~ia~EEk~H~~~f 68 (345)
T 2e0z_A 24 LRLAIIAELDAINLYEQMARYS---------------------EDENVRKILLDVAREEKAHVGEF 68 (345)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456788888888877775 35678899999999999998743
No 20
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=22.33 E-value=4.1e+02 Score=23.53 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhChhhHhhhhhhhhhhHHH-----HHHHHHHHhcCCCCCCCCCCHHHHHhhCC
Q 025472 148 FFNAYFLGYLISPKFAHRMVGYLEEEAIH-----SYTEFLKELDKGNIENVPAPAIATDYWRL 205 (252)
Q Consensus 148 f~~~~~~~YlvsPr~ahrfvgylEEeAv~-----tYt~~l~~id~g~l~~~paP~iA~~Yw~L 205 (252)
|.-.+.-+| ||..+.-+-+..--|+.. -|.+.++.+ .....|.-+..|+.+
T Consensus 123 ~idt~~~lc--s~d~~~aLGA~yatE~iaipe~~ly~~li~gL-----~~~~~~~~~l~FF~~ 178 (244)
T 3b5o_A 123 LLRTVLSLF--DRQVDYVLGATYAIEATSIPELTLIVKLVEWL-----HEGAIPKDLQYFFSK 178 (244)
T ss_dssp HHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSSCCCHHHHHHHHH
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-----HhCCCchhHHHHHHH
Confidence 445555556 777777777766667663 355555555 323678888899964
No 21
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=21.23 E-value=77 Score=25.76 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHH
Q 025472 168 GYLEEEAIHSYTEFL 182 (252)
Q Consensus 168 gylEEeAv~tYt~~l 182 (252)
||++++|+..|-++|
T Consensus 50 gy~~d~~FinYLkYL 64 (130)
T 3fbi_B 50 QIWKSPNFKNYLKYL 64 (130)
T ss_dssp GGGTSTHHHHHHHHG
T ss_pred ccccCHHHHHHHHHH
Confidence 899999999998887
No 22
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=20.50 E-value=1.1e+02 Score=22.98 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=35.9
Q ss_pred eeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHh-CCchHHHHHHHHHH
Q 025472 77 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-KPKWYERALVFAVQ 145 (252)
Q Consensus 77 ~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~-~p~~~~R~lv~~~Q 145 (252)
.+=++-||.--|+.-+++-|. ++...+.+..++++..++..-.+. ..+. ..+..+++..++..
T Consensus 22 ~~ti~~Ia~~agvs~~t~Y~~-----F~sK~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 85 (194)
T 3bqz_B 22 ATTTGEIVKLSESSKGNLYYH-----FKTKENLFLEILNIEESKWQEQWK-KEQIKAKTNREKFYLYNEL 85 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHH-----TSSHHHHHHHHHHHHHHHHHHHHH-HHGGGCCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHh-----CCCHHHHHHHHHHHHHHHHHHHHH-HHhccCCCHHHHHHHHHHH
Confidence 345677888888887776555 444456667776665554433221 1122 45667776554443
Done!