Query 025473
Match_columns 252
No_of_seqs 119 out of 246
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 4.2E-66 9.1E-71 449.3 19.7 191 11-214 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 2.1E-51 4.6E-56 370.7 18.1 214 7-226 51-275 (308)
3 PF02228 Gag_p19: Major core p 70.0 5 0.00011 30.7 2.9 33 22-54 38-74 (92)
4 PF06478 Corona_RPol_N: Corona 43.8 13 0.00027 35.2 1.4 80 18-98 149-230 (355)
5 PF10305 Fmp27_SW: RNA pol II 30.4 36 0.00078 26.7 1.9 68 82-153 7-74 (103)
6 PRK11593 folB bifunctional dih 28.5 2.1E+02 0.0045 22.5 6.0 33 26-58 52-89 (119)
7 PF15405 PH_5: Pleckstrin homo 26.5 32 0.00069 28.3 1.0 15 162-176 21-35 (135)
8 PF06597 Clostridium_P47: Clos 26.1 91 0.002 30.9 4.2 45 68-130 200-244 (456)
9 PRK11245 folX D-erythro-7,8-di 25.0 1.9E+02 0.0042 22.8 5.3 34 26-59 56-94 (120)
10 PF02152 FolB: Dihydroneopteri 24.3 1.1E+02 0.0024 23.6 3.7 37 21-57 43-85 (113)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=4.2e-66 Score=449.30 Aligned_cols=191 Identities=48% Similarity=0.858 Sum_probs=170.4
Q ss_pred ceEEEEEEecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEeeecccccCchhH
Q 025473 11 GVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCI 90 (252)
Q Consensus 11 e~v~vDFef~dp~~~DfhgIK~LL~ql~~~~~~dls~LadlIi~Q~~iGtvIK~~~dee~dvyg~~SvLnL~~~k~~~~i 90 (252)
|+||||||||||+|.||||||+||+|||+.++||+++|||+|++|++||||||++|++|+|||||+|||||++|++++|+
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 68999999999999999999999999999999999999999999999999999965678999999999999999999999
Q ss_pred HHHHHHHHhhcC---ChhHHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhhCCChhhhcCccCcc
Q 025473 91 KELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRNFFCFK 167 (252)
Q Consensus 91 ~~L~~yLl~~~~---~~~~~~~l~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEi~~a~~~~~~ee~~~~y~F~ 167 (252)
++|++||+++|+ +++..+.|+++|++++++|||||||||+|||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999999886 67788999999998889999999999999999999999999999999999875 789999
Q ss_pred EEEEEEeeEeecccchhhhhhhhhhcccCCCCCCceeccCchhhHHh
Q 025473 168 CYLLVSKIYKLKHKNANQKNKRNLKRRSASDSGDEIVYIKPEDEIFH 214 (252)
Q Consensus 168 ~yL~isk~y~~~~~~~~~k~~~~kk~~~~~~~~~~~~y~~pEDE~~~ 214 (252)
|||++||+|++.....+ ++++| +...++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~~~~~~---~~~~~----~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEKKKKKR---KKKKK----KKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeecccccc---ccccc----cCCcccceeCChhhhhcC
Confidence 99999999985322111 11111 123368999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=2.1e-51 Score=370.67 Aligned_cols=214 Identities=35% Similarity=0.591 Sum_probs=182.8
Q ss_pred CCCCceEEEEEEecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEeccCC-------CCCceEEEEee
Q 025473 7 LKKKGVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDD-------DNTPFSIVTAL 79 (252)
Q Consensus 7 ~~~~e~v~vDFef~dp~~~DfhgIK~LL~ql~~~~~~dls~LadlIi~Q~~iGtvIK~~~de-------e~dvyg~~SvL 79 (252)
...+++||+|||+++|+|.||||||+||+|+|.+++||+++|||+||+|+.+|+|||+++++ ++|+||++|+|
T Consensus 51 ~~e~e~vnidFE~~~p~d~D~~giknLL~Qlfl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~l 130 (308)
T KOG3034|consen 51 EVEDEEVNIDFEAYSPSDVDADGIKNLLQQLFLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFL 130 (308)
T ss_pred ccccceEeccccccCCCCcchHHHHHHHHHHhccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999753 26889999999
Q ss_pred ecccccCchhHHHHHHHHHhhcC---ChhHHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhhCCC
Q 025473 80 NLRRYKDHKCIKELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEP 156 (252)
Q Consensus 80 nL~~~k~~~~i~~L~~yLl~~~~---~~~~~~~l~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEi~~a~~~~~ 156 (252)
|++..++.+||++|.+|++++|. .+.+.+.++.+|.+++++|||||||||||||+||+||||++|++||+||..++
T Consensus 131 nl~~~~~~~~ikqL~~yvL~r~~k~~~k~v~~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~- 209 (308)
T KOG3034|consen 131 NLTARKDTKCIKQLQEYVLRRCKKNAEKEVVEQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN- 209 (308)
T ss_pred ehhhhccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC-
Confidence 99999999999999999999887 56789999999999999999999999999999999999999999999998654
Q ss_pred hhhhcCccCccEEEEEEeeEeecccchhhhhhhhhhc-ccCCCCCCceeccCchhhHHhhcCeEEEEEecc
Q 025473 157 TEELRNFFCFKCYLLVSKIYKLKHKNANQKNKRNLKR-RSASDSGDEIVYIKPEDEIFHKLSLWSFSFPMQ 226 (252)
Q Consensus 157 ~ee~~~~y~F~~yL~isk~y~~~~~~~~~k~~~~kk~-~~~~~~~~~~~y~~pEDE~~~~~A~~~f~~~~~ 226 (252)
++|.|.|++++.+.|....+....+++..||+ .+...+.+++.|+||||+++...+...+.|...
T Consensus 210 -----kp~~f~~~lll~~~y~~eakk~~~s~~~~kk~~~a~~~~~aE~~ff~eed~~~e~~~~i~~~~~~~ 275 (308)
T KOG3034|consen 210 -----KPYDFCYFLLLVKTYFVEAKKGKSSEKPSKKKKAALLVANAEVEFFYEEDRFFELKSLIEEDTDAG 275 (308)
T ss_pred -----CccceEEEEEEEEEeeehhccCCCcccccccHHHHhhhccchhhccchHhhhhhhhhccccccccC
Confidence 78999999999999986543222111222222 122346778999999999666666666666555
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=70.04 E-value=5 Score=30.69 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHHhhc----cCCCChhhHHHHHHc
Q 025473 22 PKPDDFHGVKILLQTYLD----DAQWDLSGFVDLILA 54 (252)
Q Consensus 22 p~~~DfhgIK~LL~ql~~----~~~~dls~LadlIi~ 54 (252)
|++-|||-+|++|.-.+. -++||.|-||.+|=.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 566699999999987664 468999999998755
No 4
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=43.78 E-value=13 Score=35.23 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred EecCCCCC-cHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEeccC-CCCCceEEEEeeecccccCchhHHHHHH
Q 025473 18 VFFDPKPD-DFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGD-DDNTPFSIVTALNLRRYKDHKCIKELKE 95 (252)
Q Consensus 18 ef~dp~~~-DfhgIK~LL~ql~~~~~~dls~LadlIi~Q~~iGtvIK~~~d-ee~dvyg~~SvLnL~~~k~~~~i~~L~~ 95 (252)
.|+||-|+ |+|.+=+-|...+..+.++.-.++|++++++-|| |+..+.- =.+..|-|=-.+--...-..+++.....
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VG-VlTlDNQDLnG~~YDFGDFv~t~pG~Gv~~~~SYYS 227 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVG-VLTLDNQDLNGQFYDFGDFVQTQPGMGVPVCDSYYS 227 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeE-EEccCccccCCceecccceeecCCCCCceeehhHHH
Confidence 58999997 9999999999999888999999999999999888 3444321 1234444433333222334455566666
Q ss_pred HHH
Q 025473 96 FLL 98 (252)
Q Consensus 96 yLl 98 (252)
|++
T Consensus 228 YmM 230 (355)
T PF06478_consen 228 YMM 230 (355)
T ss_pred HHh
Confidence 655
No 5
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=30.36 E-value=36 Score=26.70 Aligned_cols=68 Identities=10% Similarity=0.232 Sum_probs=46.6
Q ss_pred ccccCchhHHHHHHHHHhhcCChhHHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhh
Q 025473 82 RRYKDHKCIKELKEFLLKVCLEKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATE 153 (252)
Q Consensus 82 ~~~k~~~~i~~L~~yLl~~~~~~~~~~~l~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEi~~a~~ 153 (252)
.++-..++++.+..+-..... ...+....+.+........-.+|+++.. .-.|||.+.+++++.....
T Consensus 7 ~~~~S~SWi~ri~~~k~~~~~--~~~~~~~~~~G~~~~~~~~~~~~~il~~--~~~ppL~~~~~~~l~l~i~ 74 (103)
T PF10305_consen 7 QENNSTSWIRRIRKAKRTQKR--RIKENRSYLWGNDDVPDDIDENENILPY--PQRPPLMRAIFEDLDLTID 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCCCCCCccccCcccccC--CCCcHhHHHHHhcccEEEe
Confidence 334455677777777665443 2445556667665566777788888755 4679999999999987654
No 6
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=28.53 E-value=2.1e+02 Score=22.53 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHhhccCCCCh-----hhHHHHHHcCCCc
Q 025473 26 DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTV 58 (252)
Q Consensus 26 DfhgIK~LL~ql~~~~~~dl-----s~LadlIi~Q~~i 58 (252)
||..|-..+..+..+..+++ .++|+.|+++-.+
T Consensus 52 dY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~ 89 (119)
T PRK11593 52 SYADIAETVISHVEGARFALVERVAEEVAELLLARFNS 89 (119)
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC
Confidence 89999999999998888884 5577888877543
No 7
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=26.45 E-value=32 Score=28.32 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=13.0
Q ss_pred CccCccEEEEEEeeE
Q 025473 162 NFFCFKCYLLVSKIY 176 (252)
Q Consensus 162 ~~y~F~~yL~isk~y 176 (252)
..|=|||||+++|.=
T Consensus 21 ~~~LFDh~Lll~K~k 35 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPK 35 (135)
T ss_dssp EEEEESSEEEEEEEE
T ss_pred EEEeeccEEEEEEEE
Confidence 468999999999984
No 8
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=26.10 E-value=91 Score=30.90 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCCCceEEEEeeecccccCchhHHHHHHHHHhhcCChhHHHHHHHHhcCCCCceEEEEecccc
Q 025473 68 DDNTPFSIVTALNLRRYKDHKCIKELKEFLLKVCLEKDVIKDLRLFMGEQANDVGLLVSQRVV 130 (252)
Q Consensus 68 ee~dvyg~~SvLnL~~~k~~~~i~~L~~yLl~~~~~~~~~~~l~~lL~~~~~~vGLlinER~i 130 (252)
++...+|++++++=+....+. + +..=..+|. ...+.||+||+++.
T Consensus 200 ~~~s~lgvL~m~~~r~~~~~l--q---------------~~vD~~~l~-~~~~agflIS~~~F 244 (456)
T PF06597_consen 200 NDDSYLGVLSMTENRDISGNL--Q---------------QQVDPSALP-SGSNAGFLISEELF 244 (456)
T ss_pred CCCceEEEEEEEcCCCCcccc--c---------------cccChhhcc-CCCceeEEecHHHH
Confidence 356789999998855432110 0 011112343 34569999998763
No 9
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=25.02 E-value=1.9e+02 Score=22.85 Aligned_cols=34 Identities=6% Similarity=0.209 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhhccCCCC-----hhhHHHHHHcCCCcc
Q 025473 26 DFHGVKILLQTYLDDAQWD-----LSGFVDLILAQTTVG 59 (252)
Q Consensus 26 DfhgIK~LL~ql~~~~~~d-----ls~LadlIi~Q~~iG 59 (252)
||..+-..+.++.....+. ..+++++|+++..+.
T Consensus 56 dY~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~~~v~ 94 (120)
T PRK11245 56 NYRTITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVT 94 (120)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHccCCcc
Confidence 8999999999999877787 355777777765443
No 10
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=24.35 E-value=1.1e+02 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCCC-cHHHHHHHHHHhhccCCCC-----hhhHHHHHHcCCC
Q 025473 21 DPKPD-DFHGVKILLQTYLDDAQWD-----LSGFVDLILAQTT 57 (252)
Q Consensus 21 dp~~~-DfhgIK~LL~ql~~~~~~d-----ls~LadlIi~Q~~ 57 (252)
|..+. ||..+...+++++....++ ...+++.|.++-.
T Consensus 43 ~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~ 85 (113)
T PF02152_consen 43 DLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFP 85 (113)
T ss_dssp TGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCC
Confidence 45554 9999999999999888888 3457777777644
Done!