Query 025473
Match_columns 252
No_of_seqs 119 out of 246
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 11:03:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 64.1 2.4 0.00017 32.0 3.2 39 22-61 39-81 (137)
2 d1vhsa_ d.108.1.1 (A:) Putativ 39.7 41 0.003 23.7 6.9 63 18-81 3-72 (165)
3 d1s3za_ d.108.1.1 (A:) Aminogl 38.7 24 0.0017 24.4 5.2 58 18-79 4-63 (147)
4 d1yr0a1 d.108.1.1 (A:4-166) Ph 36.6 29 0.0021 24.5 5.5 61 19-82 4-73 (163)
5 d1yvoa1 d.108.1.1 (A:4-172) Hy 36.0 17 0.0013 26.1 4.1 61 20-82 3-72 (169)
6 d2ozga2 d.108.1.10 (A:8-290) P 28.6 78 0.0057 24.6 7.4 78 17-100 2-99 (283)
7 d2rnrb1 b.55.1.9 (B:1-108) TFI 23.5 20 0.0014 25.7 2.3 26 14-39 74-101 (108)
8 d2fe7a1 d.108.1.1 (A:3-158) Pr 22.9 1.1E+02 0.0083 21.1 8.8 58 20-79 4-67 (156)
9 d1qsma_ d.108.1.1 (A:) Histone 22.3 1.1E+02 0.0079 20.7 6.7 62 18-79 4-70 (150)
10 d1mk4a_ d.108.1.1 (A:) Hypothe 22.0 50 0.0036 23.2 4.5 23 19-41 4-26 (157)
11 d1b9la_ d.96.1.3 (A:) 7,8-dihy 20.5 1E+02 0.0074 21.2 5.9 38 21-58 49-92 (119)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=64.07 E-value=2.4 Score=31.99 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCCCcHHHHHHHHHHhhc----cCCCChhhHHHHHHcCCCcceE
Q 025473 22 PKPDDFHGVKILLQTYLD----DAQWDLSGFVDLILAQTTVGTV 61 (252)
Q Consensus 22 p~~~DfhgIK~LL~ql~~----~~~~dls~LadlIi~Q~~iGtv 61 (252)
|++-|||-+|++|.=.+. .+.||.|-||.+|=. +.-|.|
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liPk-gypGRv 81 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK-GYPGRV 81 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS-SCSTTH
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCCC-CCCccH
Confidence 566699999999987664 468999988887654 444443
No 2
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=39.67 E-value=41 Score=23.73 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=43.5
Q ss_pred EecCCCCCcHHHHHHHHHHhhc-------cCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEeeec
Q 025473 18 VFFDPKPDDFHGVKILLQTYLD-------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 81 (252)
Q Consensus 18 ef~dp~~~DfhgIK~LL~ql~~-------~~~~dls~LadlIi~Q~~iGtvIK~~~dee~dvyg~~SvLnL 81 (252)
..+...++|...|..+..++.. ..+.+..+..+.+.....-+...-.. ++++.+.|++++-+.
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAE-DENGNVAAWISFETF 72 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEE-CTTSCEEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEE-ecCCceEeeeeeeec
Confidence 3456678899999999887642 33566777888877766655555443 345689998877543
No 3
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=38.67 E-value=24 Score=24.35 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=37.9
Q ss_pred EecCCCCCcHHHHHHHHHHhhccCC--CChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEee
Q 025473 18 VFFDPKPDDFHGVKILLQTYLDDAQ--WDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 79 (252)
Q Consensus 18 ef~dp~~~DfhgIK~LL~ql~~~~~--~dls~LadlIi~Q~~iGtvIK~~~dee~dvyg~~SvL 79 (252)
+.+..++.|...+..|.++++.... .....+.+.+.. +....+|..+ ++.+.|++++-
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~---~~~~vG~~~~~ 63 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQA-DHLASFIAMA---DGVAIGFADAS 63 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHC-SSEEEEEEEE---TTEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhC-CCcEEEEEEE---CCEEEEEEEEE
Confidence 4567788999999999999985433 334556665554 4434444443 35688887764
No 4
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=36.57 E-value=29 Score=24.47 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=38.0
Q ss_pred ecCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCc--ceEEEeccCCCCCceEEEEeeecc
Q 025473 19 FFDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTV--GTVVKIEGDDDNTPFSIVTALNLR 82 (252)
Q Consensus 19 f~dp~~~DfhgIK~LL~ql~-------~~~~~dls~LadlIi~Q~~i--GtvIK~~~dee~dvyg~~SvLnL~ 82 (252)
.+...++|..+|..+++++. +..+.+..+..+.+.....- ..+|-.. ++.+.|++++....
T Consensus 4 IR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 4 LRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 35567789999999988754 23456666666665553322 2333332 35789988776654
No 5
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.05 E-value=17 Score=26.11 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=38.7
Q ss_pred cCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcc--eEEEeccCCCCCceEEEEeeecc
Q 025473 20 FDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTVG--TVVKIEGDDDNTPFSIVTALNLR 82 (252)
Q Consensus 20 ~dp~~~DfhgIK~LL~ql~-------~~~~~dls~LadlIi~Q~~iG--tvIK~~~dee~dvyg~~SvLnL~ 82 (252)
+...+.|..+|..+++++. +..+.+..+....+..+..-+ .+|-.+ .++.+.|++++-...
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~vG~~~~~~~~ 72 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASD--AAGEVLGYASYGDWR 72 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEEC--TTCCEEEEEEEEESS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEe--cCCCEEEeecccccc
Confidence 4557789999999988754 334556677776665543322 333332 356799998875543
No 6
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=28.57 E-value=78 Score=24.64 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=46.2
Q ss_pred EEecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEeee----------------
Q 025473 17 FVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALN---------------- 80 (252)
Q Consensus 17 Fef~dp~~~DfhgIK~LL~ql~~~~~~dls~LadlIi~Q~~iGtvIK~~~dee~dvyg~~SvLn---------------- 80 (252)
|.+...+++|...|..|+.+.|.....+....-+-+-.++. -|+..+ +-+.|.++++.
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~~--~v~~~~----~~ivg~~~~~~~~~~~~g~~~~~~~i~ 75 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF--RVIYRE----QKVAGGLAILPMGQWWGGQRVPMAGIA 75 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGGE--EEEEET----TEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCCE--EEEEEC----CEEEEEEEEEEeeeeECCeeeeEeeEE
Confidence 67788899999999999999996544433333333322221 233221 33444444443
Q ss_pred ----cccccCchhHHHHHHHHHhh
Q 025473 81 ----LRRYKDHKCIKELKEFLLKV 100 (252)
Q Consensus 81 ----L~~~k~~~~i~~L~~yLl~~ 100 (252)
..+|+.......|.+.+++.
T Consensus 76 ~v~v~p~~rg~G~~~~L~~~~~~~ 99 (283)
T d2ozga2 76 AVGIAPEYRGDGAAIALIQHTLQE 99 (283)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHH
T ss_pred EEEECcccccCChHHHHHHHHHHH
Confidence 23566666677777777754
No 7
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.47 E-value=20 Score=25.73 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEEecCCCCC--cHHHHHHHHHHhhc
Q 025473 14 QADFVFFDPKPD--DFHGVKILLQTYLD 39 (252)
Q Consensus 14 ~vDFef~dp~~~--DfhgIK~LL~ql~~ 39 (252)
.--|+|-|+..- |.+.||.+|+|++.
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~ 101 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLP 101 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHH
Confidence 467888887653 88999999999884
No 8
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.90 E-value=1.1e+02 Score=21.09 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=38.2
Q ss_pred cCCCCCcHHHHHHHHHHhhc------cCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEee
Q 025473 20 FDPKPDDFHGVKILLQTYLD------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 79 (252)
Q Consensus 20 ~dp~~~DfhgIK~LL~ql~~------~~~~dls~LadlIi~Q~~iGtvIK~~~dee~dvyg~~SvL 79 (252)
+...+.|...|-.|.+++.. ...++...+.+.+..++.-..++-... ++.+.|++++.
T Consensus 4 R~a~~~D~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~--~~~ivG~~~~~ 67 (156)
T d2fe7a1 4 RPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLS--EGRPIGYAVFF 67 (156)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTCGGGCCCCHHHHHHHHTSTTCSEEEEEEEE--TTEEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhccCCCceEEEEee--CCEEEEEEeEe
Confidence 45677899999999987642 223456677777777766555554442 35688886554
No 9
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.32 E-value=1.1e+02 Score=20.65 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=34.1
Q ss_pred EecCCCCCcHHHHHHHHHHhhc--cCCCCh---hhHHHHHHcCCCcceEEEeccCCCCCceEEEEee
Q 025473 18 VFFDPKPDDFHGVKILLQTYLD--DAQWDL---SGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 79 (252)
Q Consensus 18 ef~dp~~~DfhgIK~LL~ql~~--~~~~dl---s~LadlIi~Q~~iGtvIK~~~dee~dvyg~~SvL 79 (252)
..+...++|++.+..|.+.|.. .....- ..+..-+.++..-+...-...++++.+.|+..+.
T Consensus 4 ~IR~~~~~D~e~~~~L~~~y~~fy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~ 70 (150)
T d1qsma_ 4 TVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFF 70 (150)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCEEEEEEEESSSCCEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhCCCcccceeeeehhhcCcEEEEEEEe
Confidence 3456678899999999887653 233332 2233335554443322222223356778876653
No 10
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]}
Probab=22.00 E-value=50 Score=23.20 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.5
Q ss_pred ecCCCCCcHHHHHHHHHHhhccC
Q 025473 19 FFDPKPDDFHGVKILLQTYLDDA 41 (252)
Q Consensus 19 f~dp~~~DfhgIK~LL~ql~~~~ 41 (252)
.+...++|++.|-.|+++++...
T Consensus 4 iR~~~~~D~~~i~~l~~~~~~~~ 26 (157)
T d1mk4a_ 4 IRTITSSDYEMVTSVLNEWWGGR 26 (157)
T ss_dssp EEECCGGGHHHHHHHTTTSSTTC
T ss_pred EEeCCHHHHHHHHHHHHHHhcCC
Confidence 35677889999999999988543
No 11
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase {Escherichia coli [TaxId: 562]}
Probab=20.48 E-value=1e+02 Score=21.22 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCCCC-cHHHHHHHHHHhhccCCCC-----hhhHHHHHHcCCCc
Q 025473 21 DPKPD-DFHGVKILLQTYLDDAQWD-----LSGFVDLILAQTTV 58 (252)
Q Consensus 21 dp~~~-DfhgIK~LL~ql~~~~~~d-----ls~LadlIi~Q~~i 58 (252)
|..+. ||..|...+.+++...+++ ..++++.|+....+
T Consensus 49 ~l~~tvdY~~i~~~i~~~~~~~~~~liE~la~~i~~~i~~~~~v 92 (119)
T d1b9la_ 49 DINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWV 92 (119)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTSEESCHHHHHHHHHHHHTCSTTC
T ss_pred chhhhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCCC
Confidence 34444 9999999999999877777 34466666665544
Done!