Query 025474
Match_columns 252
No_of_seqs 198 out of 1621
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 4.6E-29 9.9E-34 206.7 15.7 151 68-251 3-153 (157)
2 cd02970 PRX_like2 Peroxiredoxi 100.0 1.2E-28 2.6E-33 199.3 15.1 149 74-235 1-149 (149)
3 KOG4498 Uncharacterized conser 100.0 4.4E-29 9.6E-34 209.5 9.7 190 48-252 7-196 (197)
4 cd03018 PRX_AhpE_like Peroxire 99.9 2E-24 4.3E-29 175.5 15.7 144 70-249 2-149 (149)
5 PRK00522 tpx lipid hydroperoxi 99.9 7.3E-24 1.6E-28 177.5 17.3 147 69-252 18-167 (167)
6 PRK13191 putative peroxiredoxi 99.9 5.9E-24 1.3E-28 185.4 17.0 146 69-251 7-158 (215)
7 TIGR03137 AhpC peroxiredoxin. 99.9 5.4E-24 1.2E-28 181.5 15.9 144 70-251 3-153 (187)
8 cd03016 PRX_1cys Peroxiredoxin 99.9 7.7E-24 1.7E-28 182.8 16.2 145 71-251 1-151 (203)
9 PRK13599 putative peroxiredoxi 99.9 1.3E-23 2.9E-28 183.2 16.6 146 70-252 3-154 (215)
10 PTZ00137 2-Cys peroxiredoxin; 99.9 1.3E-23 2.7E-28 187.9 16.6 147 67-251 66-222 (261)
11 PRK13190 putative peroxiredoxi 99.9 1.4E-23 3.1E-28 181.1 16.3 144 69-251 2-151 (202)
12 cd03014 PRX_Atyp2cys Peroxired 99.9 2.2E-23 4.8E-28 168.8 15.3 141 70-249 1-143 (143)
13 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 3.3E-23 7.2E-28 162.7 15.0 124 71-231 1-124 (124)
14 PRK10382 alkyl hydroperoxide r 99.9 4.7E-23 1E-27 176.2 16.6 144 70-251 3-153 (187)
15 PRK13189 peroxiredoxin; Provis 99.9 4.8E-23 1E-27 180.4 16.8 146 69-251 9-160 (222)
16 cd03013 PRX5_like Peroxiredoxi 99.9 2.6E-23 5.7E-28 172.4 14.2 136 71-238 1-143 (155)
17 cd03015 PRX_Typ2cys Peroxiredo 99.9 7.4E-23 1.6E-27 171.8 16.6 143 71-251 1-154 (173)
18 PF08534 Redoxin: Redoxin; In 99.9 8.7E-23 1.9E-27 165.6 15.7 143 70-247 1-146 (146)
19 PRK09437 bcp thioredoxin-depen 99.9 2E-22 4.4E-27 165.4 17.1 151 68-251 3-153 (154)
20 PRK15000 peroxidase; Provision 99.9 2.2E-22 4.7E-27 173.7 16.3 145 70-251 3-159 (200)
21 cd02971 PRX_family Peroxiredox 99.9 3.5E-22 7.5E-27 160.2 15.3 138 74-246 1-139 (140)
22 cd03017 PRX_BCP Peroxiredoxin 99.9 4.1E-22 9E-27 160.0 15.0 139 73-247 1-139 (140)
23 PTZ00253 tryparedoxin peroxida 99.9 6.2E-21 1.4E-25 164.0 16.1 146 68-251 5-161 (199)
24 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 1.1E-20 2.3E-25 148.6 11.9 115 118-236 1-115 (115)
25 KOG0855 Alkyl hydroperoxide re 99.8 6.9E-20 1.5E-24 151.7 14.6 177 28-251 32-209 (211)
26 cd02969 PRX_like1 Peroxiredoxi 99.8 1.3E-19 2.8E-24 151.5 14.7 137 72-251 1-149 (171)
27 PTZ00056 glutathione peroxidas 99.8 2.2E-19 4.8E-24 154.8 13.7 89 70-160 14-110 (199)
28 PLN02399 phospholipid hydroper 99.8 4.2E-19 9.1E-24 156.8 15.4 135 70-235 74-220 (236)
29 cd00340 GSH_Peroxidase Glutath 99.8 1.3E-19 2.8E-24 149.1 10.1 84 75-161 2-94 (152)
30 COG0450 AhpC Peroxiredoxin [Po 99.8 7.7E-19 1.7E-23 149.2 14.5 145 69-251 3-158 (194)
31 PLN02412 probable glutathione 99.8 5.2E-19 1.1E-23 148.2 12.8 134 72-236 6-151 (167)
32 TIGR02661 MauD methylamine deh 99.8 1.3E-18 2.8E-23 148.6 15.4 136 68-252 45-180 (189)
33 PTZ00256 glutathione peroxidas 99.8 6.6E-19 1.4E-23 149.6 13.4 88 72-160 17-113 (183)
34 PRK03147 thiol-disulfide oxido 99.8 1.8E-18 3.9E-23 143.7 15.1 139 67-251 33-172 (173)
35 TIGR02540 gpx7 putative glutat 99.8 1.4E-18 3E-23 143.0 12.0 84 75-160 2-94 (153)
36 cd03012 TlpA_like_DipZ_like Tl 99.8 1.3E-18 2.8E-23 138.5 10.9 107 85-235 13-125 (126)
37 PRK15412 thiol:disulfide inter 99.8 6.6E-18 1.4E-22 143.6 13.8 121 69-236 39-163 (185)
38 cd02968 SCO SCO (an acronym fo 99.8 1.1E-17 2.3E-22 134.6 12.1 130 74-233 1-141 (142)
39 TIGR00385 dsbE periplasmic pro 99.7 4.5E-17 9.7E-22 136.9 15.1 121 68-235 33-157 (173)
40 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.8E-16 4E-21 125.7 12.7 117 73-236 1-121 (127)
41 cd02967 mauD Methylamine utili 99.7 3.3E-16 7.1E-21 121.5 13.4 83 76-160 1-84 (114)
42 cd02966 TlpA_like_family TlpA- 99.7 1.1E-15 2.4E-20 115.7 12.6 94 77-172 1-96 (116)
43 PRK14018 trifunctional thiored 99.6 1E-14 2.2E-19 141.6 16.5 122 69-236 32-160 (521)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 9.2E-15 2E-19 114.8 13.2 89 76-171 1-91 (123)
45 PRK10606 btuE putative glutath 99.6 7E-15 1.5E-19 125.4 12.0 85 73-160 3-96 (183)
46 KOG0854 Alkyl hydroperoxide re 99.6 2.7E-14 5.9E-19 119.5 13.8 155 66-252 3-166 (224)
47 cd03008 TryX_like_RdCVF Trypar 99.5 4.1E-14 8.9E-19 116.6 10.5 84 86-171 16-110 (146)
48 TIGR01626 ytfJ_HI0045 conserve 99.5 6.4E-14 1.4E-18 119.5 11.1 132 69-250 23-179 (184)
49 PLN02919 haloacid dehalogenase 99.5 6.3E-14 1.4E-18 146.4 13.2 136 68-249 390-534 (1057)
50 cd03009 TryX_like_TryX_NRX Try 99.5 4.4E-14 9.5E-19 112.7 8.6 89 80-171 3-97 (131)
51 PRK13728 conjugal transfer pro 99.5 1.6E-13 3.6E-18 116.6 12.2 107 69-235 49-157 (181)
52 cd02964 TryX_like_family Trypa 99.4 1.5E-12 3.1E-17 104.5 10.3 65 86-152 8-75 (132)
53 KOG0852 Alkyl hydroperoxide re 99.3 4.7E-11 1E-15 100.0 13.6 144 70-251 5-158 (196)
54 COG2077 Tpx Peroxiredoxin [Pos 99.2 1.5E-10 3.2E-15 94.9 12.3 139 68-242 17-157 (158)
55 PF13905 Thioredoxin_8: Thiore 99.2 1.7E-10 3.6E-15 86.7 10.6 64 97-160 1-66 (95)
56 TIGR02738 TrbB type-F conjugat 99.0 1.5E-09 3.3E-14 90.1 10.1 49 84-141 43-91 (153)
57 KOG0541 Alkyl hydroperoxide re 99.0 3E-09 6.5E-14 87.7 8.5 150 68-249 8-170 (171)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.8 7.1E-08 1.5E-12 81.4 12.5 86 71-158 28-120 (174)
59 COG0678 AHP1 Peroxiredoxin [Po 98.8 2.6E-08 5.7E-13 81.7 9.3 107 69-175 3-120 (165)
60 TIGR02740 TraF-like TraF-like 98.6 1.2E-07 2.5E-12 85.7 7.7 52 85-141 156-207 (271)
61 COG0386 BtuE Glutathione perox 98.6 7.4E-07 1.6E-11 73.6 11.0 84 73-159 3-95 (162)
62 COG1999 Uncharacterized protei 98.5 1.5E-06 3.3E-11 75.5 12.0 141 77-251 49-201 (207)
63 KOG2501 Thioredoxin, nucleored 98.5 2.3E-07 4.9E-12 77.0 5.3 96 77-173 14-115 (157)
64 PF00255 GSHPx: Glutathione pe 98.5 1.1E-06 2.4E-11 68.9 8.8 80 77-159 3-91 (108)
65 cd02950 TxlA TRX-like protein 98.5 1E-07 2.2E-12 77.9 3.1 84 79-164 2-88 (142)
66 cd02985 TRX_CDSP32 TRX family, 98.4 1.4E-06 3.1E-11 66.9 8.0 57 96-154 14-70 (103)
67 cd02951 SoxW SoxW family; SoxW 98.4 1.6E-06 3.6E-11 68.4 7.9 46 95-141 11-60 (125)
68 PF05988 DUF899: Bacterial pro 98.4 1.7E-06 3.8E-11 75.0 8.3 99 72-171 43-147 (211)
69 KOG1651 Glutathione peroxidase 98.2 1.4E-05 3.1E-10 66.8 10.7 87 71-159 10-105 (171)
70 cd02948 TRX_NDPK TRX domain, T 98.2 2E-06 4.3E-11 65.9 4.6 54 94-147 14-67 (102)
71 PF00837 T4_deiodinase: Iodoth 98.2 2.1E-05 4.5E-10 69.5 11.2 102 68-171 72-200 (237)
72 cd02999 PDI_a_ERp44_like PDIa 98.1 6.3E-06 1.4E-10 63.2 5.1 42 96-139 17-58 (100)
73 PF13098 Thioredoxin_2: Thiore 98.1 2.2E-05 4.7E-10 60.3 8.1 54 96-149 4-60 (112)
74 cd02953 DsbDgamma DsbD gamma f 97.9 4.1E-05 8.8E-10 58.4 7.3 66 95-161 9-81 (104)
75 cd02963 TRX_DnaJ TRX domain, D 97.9 3.6E-05 7.9E-10 59.9 7.1 46 96-141 23-68 (111)
76 cd02993 PDI_a_APS_reductase PD 97.9 3.7E-05 8.1E-10 59.4 6.5 44 97-140 21-64 (109)
77 COG4312 Uncharacterized protei 97.8 4.2E-05 9E-10 66.6 6.4 93 80-172 56-154 (247)
78 cd02956 ybbN ybbN protein fami 97.8 3.1E-05 6.8E-10 57.9 4.9 45 97-142 12-56 (96)
79 cd03000 PDI_a_TMX3 PDIa family 97.8 5.9E-05 1.3E-09 57.6 6.4 45 96-140 14-60 (104)
80 cd02959 ERp19 Endoplasmic reti 97.8 4.2E-05 9E-10 60.5 5.0 71 96-167 18-91 (117)
81 cd02997 PDI_a_PDIR PDIa family 97.8 2.9E-05 6.3E-10 58.5 4.0 70 92-162 12-84 (104)
82 cd02996 PDI_a_ERp44 PDIa famil 97.7 7.1E-05 1.5E-09 57.5 6.0 50 92-141 13-67 (108)
83 cd03005 PDI_a_ERp46 PDIa famil 97.7 2.9E-05 6.3E-10 58.3 3.1 47 95-142 15-63 (102)
84 PRK10996 thioredoxin 2; Provis 97.7 1.8E-05 3.8E-10 64.3 1.8 53 89-142 44-96 (139)
85 cd02949 TRX_NTR TRX domain, no 97.7 4.5E-05 9.8E-10 57.6 3.6 48 94-142 10-57 (97)
86 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 6.3E-05 1.4E-09 57.0 4.4 58 95-156 16-74 (101)
87 cd03002 PDI_a_MPD1_like PDI fa 97.6 0.00016 3.4E-09 55.2 6.4 66 96-163 17-85 (109)
88 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.00022 4.7E-09 56.2 7.4 47 95-142 27-73 (113)
89 cd02962 TMX2 TMX2 family; comp 97.6 0.00019 4.1E-09 59.6 6.7 46 97-142 47-92 (152)
90 PRK09381 trxA thioredoxin; Pro 97.6 7.9E-05 1.7E-09 57.2 4.2 47 96-143 20-66 (109)
91 cd02998 PDI_a_ERp38 PDIa famil 97.6 0.00014 2.9E-09 54.6 4.9 44 97-140 18-62 (105)
92 TIGR01126 pdi_dom protein disu 97.6 9.5E-05 2.1E-09 55.2 4.1 70 93-165 9-82 (102)
93 TIGR01295 PedC_BrcD bacterioci 97.6 0.00012 2.6E-09 58.4 4.8 58 94-154 20-85 (122)
94 cd03004 PDI_a_ERdj5_C PDIa fam 97.5 0.00028 6.1E-09 53.5 6.6 55 96-154 18-72 (104)
95 PTZ00051 thioredoxin; Provisio 97.5 7.1E-05 1.5E-09 56.0 2.4 46 93-140 14-59 (98)
96 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.00043 9.4E-09 51.8 6.5 47 96-142 17-64 (104)
97 cd02961 PDI_a_family Protein D 97.4 0.00015 3.2E-09 53.3 3.8 67 93-162 11-81 (101)
98 cd02954 DIM1 Dim1 family; Dim1 97.4 0.0004 8.6E-09 55.0 6.4 45 97-142 14-58 (114)
99 cd02994 PDI_a_TMX PDIa family, 97.4 0.00032 7E-09 52.9 5.5 42 100-141 19-60 (101)
100 cd03001 PDI_a_P5 PDIa family, 97.4 0.00065 1.4E-08 50.9 6.8 45 96-141 17-61 (103)
101 cd02984 TRX_PICOT TRX domain, 97.4 0.00023 5.1E-09 53.0 4.2 43 97-140 14-56 (97)
102 cd02992 PDI_a_QSOX PDIa family 97.4 0.00086 1.9E-08 52.5 7.5 57 97-154 19-77 (114)
103 TIGR01068 thioredoxin thioredo 97.3 0.00043 9.3E-09 51.3 4.9 54 97-154 14-67 (101)
104 cd02947 TRX_family TRX family; 97.3 0.00058 1.3E-08 48.9 5.2 43 96-140 9-51 (93)
105 cd02986 DLP Dim1 family, Dim1- 97.3 0.00076 1.6E-08 53.4 6.1 54 96-153 13-66 (114)
106 PF00085 Thioredoxin: Thioredo 97.2 0.0012 2.6E-08 49.2 6.7 54 97-154 17-70 (103)
107 COG0526 TrxA Thiol-disulfide i 97.2 0.0015 3.3E-08 47.8 7.1 66 97-163 32-101 (127)
108 cd02952 TRP14_like Human TRX-r 97.1 0.00093 2E-08 53.3 5.5 44 97-141 21-71 (119)
109 cd01659 TRX_superfamily Thiore 97.1 0.0022 4.7E-08 41.7 6.2 45 101-147 1-45 (69)
110 PHA02278 thioredoxin-like prot 97.0 0.00091 2E-08 51.8 4.5 45 95-140 12-56 (103)
111 KOG2792 Putative cytochrome C 97.0 0.003 6.6E-08 56.5 7.7 75 76-152 120-202 (280)
112 TIGR00424 APS_reduc 5'-adenyly 97.0 0.0022 4.7E-08 62.2 7.3 46 96-141 370-415 (463)
113 KOG0907 Thioredoxin [Posttrans 96.9 0.0016 3.5E-08 50.8 5.0 53 97-154 21-73 (106)
114 PLN00410 U5 snRNP protein, DIM 96.9 0.0024 5.2E-08 52.5 5.9 55 96-154 22-76 (142)
115 cd02957 Phd_like Phosducin (Ph 96.9 0.0034 7.5E-08 48.7 6.5 50 98-153 25-74 (113)
116 PF13899 Thioredoxin_7: Thiore 96.8 0.0087 1.9E-07 43.7 7.6 64 97-161 17-82 (82)
117 cd02975 PfPDO_like_N Pyrococcu 96.7 0.0046 1E-07 48.3 6.1 53 96-153 21-73 (113)
118 TIGR01130 ER_PDI_fam protein d 96.7 0.0014 3.1E-08 61.9 3.7 60 92-154 13-74 (462)
119 PF04592 SelP_N: Selenoprotein 96.6 0.019 4E-07 50.8 9.8 74 97-170 26-107 (238)
120 PTZ00443 Thioredoxin domain-co 96.6 0.0046 1E-07 54.5 6.0 53 98-154 53-105 (224)
121 TIGR00411 redox_disulf_1 small 96.5 0.0047 1E-07 44.4 4.8 42 99-141 1-42 (82)
122 cd02989 Phd_like_TxnDC9 Phosdu 96.5 0.0044 9.5E-08 48.5 4.7 45 96-142 21-65 (113)
123 cd03065 PDI_b_Calsequestrin_N 96.4 0.0062 1.3E-07 48.6 5.3 46 96-141 26-76 (120)
124 PRK00293 dipZ thiol:disulfide 96.4 0.0079 1.7E-07 59.9 7.2 68 96-165 473-547 (571)
125 PLN02309 5'-adenylylsulfate re 96.4 0.0074 1.6E-07 58.5 6.6 44 96-139 364-407 (457)
126 cd02955 SSP411 TRX domain, SSP 96.3 0.01 2.2E-07 47.5 6.1 69 96-165 14-93 (124)
127 cd02965 HyaE HyaE family; HyaE 96.3 0.0054 1.2E-07 48.4 4.1 47 95-142 25-73 (111)
128 PF13728 TraF: F plasmid trans 96.3 0.013 2.9E-07 51.1 7.0 41 96-140 120-160 (215)
129 TIGR02196 GlrX_YruB Glutaredox 96.3 0.023 5.1E-07 39.2 7.0 53 101-160 2-56 (74)
130 PTZ00102 disulphide isomerase; 96.2 0.0064 1.4E-07 58.2 4.9 69 95-164 373-443 (477)
131 PTZ00102 disulphide isomerase; 96.2 0.0068 1.5E-07 58.0 5.0 59 93-154 45-105 (477)
132 KOG0910 Thioredoxin-like prote 95.9 0.013 2.7E-07 48.6 4.4 44 97-141 61-104 (150)
133 COG3118 Thioredoxin domain-con 95.8 0.017 3.7E-07 52.8 5.4 45 97-142 43-87 (304)
134 cd02982 PDI_b'_family Protein 95.7 0.016 3.4E-07 43.5 4.2 53 98-154 13-65 (103)
135 PF09695 YtfJ_HI0045: Bacteria 95.7 0.27 6E-06 41.1 11.6 138 70-251 2-158 (160)
136 TIGR02200 GlrX_actino Glutared 95.5 0.047 1E-06 38.5 5.9 52 101-159 2-56 (77)
137 cd02979 PHOX_C FAD-dependent P 95.2 0.12 2.6E-06 43.4 8.1 70 72-141 1-86 (167)
138 cd02987 Phd_like_Phd Phosducin 95.1 0.038 8.2E-07 46.7 5.1 42 98-141 84-125 (175)
139 TIGR00412 redox_disulf_2 small 95.1 0.05 1.1E-06 39.4 5.0 39 102-143 3-41 (76)
140 cd02973 TRX_GRX_like Thioredox 95.0 0.055 1.2E-06 37.5 4.7 51 101-156 3-54 (67)
141 TIGR01130 ER_PDI_fam protein d 95.0 0.051 1.1E-06 51.3 5.9 46 96-141 363-410 (462)
142 KOG0190 Protein disulfide isom 94.9 0.027 5.8E-07 55.0 4.0 63 91-156 36-101 (493)
143 PRK11200 grxA glutaredoxin 1; 94.7 0.16 3.5E-06 37.2 7.0 58 101-160 3-65 (85)
144 PF00462 Glutaredoxin: Glutare 94.6 0.19 4.2E-06 34.1 6.7 53 101-160 1-56 (60)
145 PRK01655 spxA transcriptional 94.6 0.087 1.9E-06 42.4 5.6 66 101-173 2-71 (131)
146 TIGR02190 GlrX-dom Glutaredoxi 94.6 0.17 3.6E-06 36.7 6.6 52 101-159 10-62 (79)
147 PF07976 Phe_hydrox_dim: Pheno 94.4 0.029 6.3E-07 47.2 2.6 107 68-174 29-167 (169)
148 PF06110 DUF953: Eukaryotic pr 94.4 0.12 2.5E-06 41.3 5.9 45 96-141 19-69 (119)
149 cd02958 UAS UAS family; UAS is 94.4 0.2 4.4E-06 38.6 7.2 67 96-164 16-89 (114)
150 TIGR02180 GRX_euk Glutaredoxin 94.4 0.18 4E-06 36.0 6.4 56 102-160 2-61 (84)
151 cd02960 AGR Anterior Gradient 94.0 0.032 7E-07 45.2 2.0 72 96-169 22-96 (130)
152 cd02976 NrdH NrdH-redoxin (Nrd 93.9 0.35 7.5E-06 33.1 6.9 55 101-162 2-58 (73)
153 PF13778 DUF4174: Domain of un 93.6 0.57 1.2E-05 37.0 8.4 51 90-140 3-53 (118)
154 PRK13703 conjugal pilus assemb 93.6 0.12 2.7E-06 46.2 5.0 41 96-140 143-183 (248)
155 cd03026 AhpF_NTD_C TRX-GRX-lik 93.5 0.094 2E-06 39.3 3.6 42 96-139 11-52 (89)
156 cd03036 ArsC_like Arsenate Red 93.3 0.18 4E-06 39.2 5.1 65 102-173 2-70 (111)
157 PRK08294 phenol 2-monooxygenas 93.3 0.42 9.1E-06 48.2 8.9 104 68-171 462-595 (634)
158 smart00594 UAS UAS domain. 93.3 0.26 5.6E-06 38.8 6.0 66 96-163 26-97 (122)
159 TIGR02739 TraF type-F conjugat 93.3 0.22 4.8E-06 44.8 6.2 41 97-141 151-191 (256)
160 TIGR02187 GlrX_arch Glutaredox 93.1 0.17 3.6E-06 43.8 5.0 43 95-139 18-62 (215)
161 TIGR02187 GlrX_arch Glutaredox 93.0 0.28 6E-06 42.4 6.3 53 96-153 132-184 (215)
162 PTZ00062 glutaredoxin; Provisi 93.0 0.18 3.9E-06 43.9 5.0 40 98-139 18-57 (204)
163 cd03418 GRX_GRXb_1_3_like Glut 92.9 0.76 1.6E-05 32.2 7.4 53 101-160 2-58 (75)
164 cd02988 Phd_like_VIAF Phosduci 92.8 0.19 4.1E-06 43.2 4.9 40 98-139 103-142 (192)
165 cd02977 ArsC_family Arsenate R 92.8 0.28 6E-06 37.5 5.3 65 101-172 1-69 (105)
166 PHA02125 thioredoxin-like prot 92.6 0.25 5.5E-06 35.4 4.6 21 101-121 2-22 (75)
167 PF05176 ATP-synt_10: ATP10 pr 92.6 1.8 4E-05 38.8 11.0 71 69-141 95-168 (252)
168 TIGR02194 GlrX_NrdH Glutaredox 92.5 0.61 1.3E-05 33.0 6.5 52 102-160 2-54 (72)
169 TIGR01617 arsC_related transcr 92.5 0.36 7.7E-06 37.8 5.7 64 102-172 2-69 (117)
170 cd03032 ArsC_Spx Arsenate Redu 92.4 0.42 9.2E-06 37.3 6.1 66 101-173 2-71 (115)
171 PF14595 Thioredoxin_9: Thiore 92.3 0.13 2.8E-06 41.4 3.0 65 96-162 40-107 (129)
172 PRK10824 glutaredoxin-4; Provi 92.2 0.66 1.4E-05 36.7 6.9 57 98-161 15-78 (115)
173 cd03029 GRX_hybridPRX5 Glutare 92.1 0.76 1.7E-05 32.3 6.6 53 101-160 3-57 (72)
174 PRK13344 spxA transcriptional 92.0 0.57 1.2E-05 37.8 6.5 66 101-173 2-71 (132)
175 PRK12559 transcriptional regul 91.8 0.58 1.3E-05 37.7 6.3 66 101-173 2-71 (131)
176 TIGR00365 monothiol glutaredox 91.7 0.95 2.1E-05 34.4 7.1 58 95-160 10-74 (97)
177 cd03027 GRX_DEP Glutaredoxin ( 91.1 1.5 3.3E-05 30.9 7.3 52 102-160 4-58 (73)
178 TIGR02183 GRXA Glutaredoxin, G 91.0 0.59 1.3E-05 34.5 5.2 58 101-160 2-64 (86)
179 PRK10329 glutaredoxin-like pro 90.8 1.5 3.2E-05 32.2 7.1 55 101-162 3-58 (81)
180 cd03419 GRX_GRXh_1_2_like Glut 90.6 1.4 3E-05 31.3 6.8 55 101-160 2-60 (82)
181 COG0695 GrxC Glutaredoxin and 90.6 0.96 2.1E-05 33.1 5.9 52 102-160 4-60 (80)
182 TIGR02189 GlrX-like_plant Glut 90.5 0.67 1.5E-05 35.3 5.2 57 95-160 6-68 (99)
183 PRK10638 glutaredoxin 3; Provi 90.5 1.3 2.9E-05 32.1 6.6 53 101-160 4-59 (83)
184 KOG0191 Thioredoxin/protein di 90.4 0.46 1E-05 44.7 5.1 56 97-156 47-103 (383)
185 cd03028 GRX_PICOT_like Glutare 90.4 0.46 9.9E-06 35.4 4.1 61 92-160 3-70 (90)
186 cd02066 GRX_family Glutaredoxi 90.2 1.5 3.2E-05 29.6 6.4 53 101-160 2-56 (72)
187 PRK06184 hypothetical protein; 90.1 2.6 5.7E-05 40.8 10.2 76 68-171 385-461 (502)
188 cd03007 PDI_a_ERp29_N PDIa fam 90.1 0.66 1.4E-05 36.8 5.0 63 90-156 11-82 (116)
189 PF13462 Thioredoxin_4: Thiore 89.7 1 2.2E-05 36.1 6.0 50 87-138 4-54 (162)
190 cd03035 ArsC_Yffb Arsenate Red 89.6 0.87 1.9E-05 35.2 5.2 63 101-172 1-67 (105)
191 PRK08132 FAD-dependent oxidore 89.3 3.1 6.8E-05 40.8 10.2 116 68-250 426-541 (547)
192 TIGR02181 GRX_bact Glutaredoxi 89.1 1.5 3.4E-05 31.2 6.0 53 101-160 1-56 (79)
193 PF05768 DUF836: Glutaredoxin- 88.2 1.5 3.2E-05 32.0 5.4 56 101-162 2-57 (81)
194 cd03023 DsbA_Com1_like DsbA fa 87.9 0.72 1.6E-05 36.4 3.9 39 96-136 4-42 (154)
195 PRK11657 dsbG disulfide isomer 87.4 9.8 0.00021 33.9 11.2 38 96-136 116-153 (251)
196 KOG3425 Uncharacterized conser 86.2 1.2 2.5E-05 35.7 4.1 34 107-141 43-76 (128)
197 KOG0190 Protein disulfide isom 85.7 0.99 2.1E-05 44.3 4.1 43 96-139 383-425 (493)
198 PHA03050 glutaredoxin; Provisi 85.1 3.5 7.7E-05 32.0 6.3 56 103-160 17-76 (108)
199 KOG0908 Thioredoxin-like prote 85.1 1.2 2.7E-05 40.0 4.1 54 96-154 20-73 (288)
200 cd02991 UAS_ETEA UAS family, E 84.9 3.7 8E-05 32.3 6.4 90 95-191 15-112 (116)
201 KOG1731 FAD-dependent sulfhydr 84.6 0.49 1.1E-05 46.9 1.5 61 97-158 57-120 (606)
202 TIGR03759 conj_TIGR03759 integ 82.4 5.4 0.00012 34.6 6.8 55 96-156 108-163 (200)
203 KOG0191 Thioredoxin/protein di 82.1 2.2 4.7E-05 40.1 4.8 57 98-154 163-220 (383)
204 PRK10026 arsenate reductase; P 82.1 4.4 9.5E-05 33.2 5.9 66 101-173 4-73 (141)
205 PTZ00062 glutaredoxin; Provisi 82.0 1.9 4E-05 37.5 4.0 61 92-160 108-175 (204)
206 PRK06183 mhpA 3-(3-hydroxyphen 81.1 13 0.00028 36.4 10.0 87 69-170 411-497 (538)
207 cd03034 ArsC_ArsC Arsenate Red 80.1 4.5 9.7E-05 31.4 5.2 66 101-173 1-70 (112)
208 KOG1752 Glutaredoxin and relat 78.7 3.5 7.6E-05 32.0 4.1 44 99-150 15-61 (104)
209 COG4232 Thiol:disulfide interc 78.6 1.7 3.7E-05 43.3 2.8 75 90-164 465-546 (569)
210 COG2179 Predicted hydrolase of 78.6 4.5 9.8E-05 34.3 5.0 40 116-155 48-87 (175)
211 TIGR00014 arsC arsenate reduct 77.9 6.3 0.00014 30.7 5.4 66 101-173 1-71 (114)
212 cd03020 DsbA_DsbC_DsbG DsbA fa 76.8 4.2 9.2E-05 34.4 4.5 36 96-136 76-111 (197)
213 PRK10877 protein disulfide iso 75.1 6.2 0.00013 34.7 5.2 37 96-136 106-142 (232)
214 cd03060 GST_N_Omega_like GST_N 74.4 6.5 0.00014 27.3 4.3 53 102-161 2-55 (71)
215 cd03019 DsbA_DsbA DsbA family, 74.0 4.8 0.0001 32.7 4.0 38 96-134 14-51 (178)
216 TIGR00995 3a0901s06TIC22 chlor 73.2 9.9 0.00022 34.5 6.1 85 70-162 77-161 (270)
217 cd03041 GST_N_2GST_N GST_N fam 70.9 23 0.00051 24.9 6.6 53 101-161 2-57 (77)
218 KOG0912 Thiol-disulfide isomer 70.8 10 0.00022 35.3 5.5 33 97-129 13-45 (375)
219 PF13192 Thioredoxin_3: Thiore 69.5 14 0.00029 26.4 5.1 34 106-142 7-40 (76)
220 PF03190 Thioredox_DsbH: Prote 69.2 13 0.00029 31.2 5.6 70 97-166 37-116 (163)
221 cd00570 GST_N_family Glutathio 68.2 6.8 0.00015 25.7 3.1 56 103-164 3-59 (71)
222 PRK10853 putative reductase; P 68.0 14 0.0003 29.2 5.2 64 101-173 2-69 (118)
223 COG1393 ArsC Arsenate reductas 67.7 9.8 0.00021 30.1 4.3 65 101-172 3-71 (117)
224 PF03960 ArsC: ArsC family; I 67.3 29 0.00063 26.5 6.9 59 105-170 2-64 (110)
225 cd02972 DsbA_family DsbA famil 66.3 8 0.00017 27.3 3.4 36 101-137 1-36 (98)
226 COG3019 Predicted metal-bindin 62.6 23 0.0005 29.2 5.6 50 98-157 25-74 (149)
227 PF06053 DUF929: Domain of unk 62.1 10 0.00022 34.1 3.8 38 92-129 53-90 (249)
228 cd03033 ArsC_15kD Arsenate Red 61.7 23 0.00051 27.6 5.4 64 101-173 2-69 (113)
229 cd03061 GST_N_CLIC GST_N famil 61.6 10 0.00022 28.6 3.2 54 107-167 20-74 (91)
230 TIGR01662 HAD-SF-IIIA HAD-supe 60.3 31 0.00068 26.6 6.0 40 117-156 28-75 (132)
231 cd03059 GST_N_SspA GST_N famil 58.1 11 0.00025 25.7 2.8 51 103-162 3-56 (73)
232 COG1651 DsbG Protein-disulfide 56.6 24 0.00053 30.5 5.3 45 80-126 69-113 (244)
233 PF01323 DSBA: DSBA-like thior 53.4 47 0.001 27.2 6.3 56 101-156 2-77 (193)
234 PRK13601 putative L7Ae-like ri 52.6 51 0.0011 24.4 5.6 51 123-174 17-71 (82)
235 TIGR03765 ICE_PFL_4695 integra 52.6 83 0.0018 24.6 6.9 61 114-175 35-95 (105)
236 cd03045 GST_N_Delta_Epsilon GS 52.4 17 0.00037 25.0 3.0 58 102-164 2-61 (74)
237 PF11072 DUF2859: Protein of u 50.8 85 0.0018 25.8 7.1 61 114-175 73-133 (142)
238 cd03051 GST_N_GTT2_like GST_N 49.1 43 0.00094 22.6 4.6 55 102-161 2-58 (74)
239 cd03037 GST_N_GRX2 GST_N famil 49.1 38 0.00082 23.2 4.3 48 104-161 4-54 (71)
240 PF00875 DNA_photolyase: DNA p 48.9 49 0.0011 26.9 5.6 66 97-163 25-98 (165)
241 cd01427 HAD_like Haloacid deha 48.5 35 0.00077 25.2 4.4 38 116-153 26-63 (139)
242 PRK12759 bifunctional gluaredo 47.5 55 0.0012 31.3 6.4 41 101-148 4-44 (410)
243 cd03055 GST_N_Omega GST_N fami 46.6 22 0.00047 26.0 2.9 54 101-161 19-73 (89)
244 TIGR01485 SPP_plant-cyano sucr 45.5 34 0.00075 29.7 4.4 55 113-167 20-76 (249)
245 PF00702 Hydrolase: haloacid d 45.1 59 0.0013 26.7 5.6 38 117-154 130-167 (215)
246 PF12710 HAD: haloacid dehalog 41.4 34 0.00073 27.8 3.5 35 121-155 96-130 (192)
247 COG4615 PvdE ABC-type sideroph 40.8 77 0.0017 31.0 6.1 53 94-148 464-519 (546)
248 COG3769 Predicted hydrolase (H 40.7 37 0.0008 30.4 3.7 44 123-166 32-76 (274)
249 PF13419 HAD_2: Haloacid dehal 40.7 44 0.00095 26.1 4.0 36 119-154 82-117 (176)
250 TIGR01689 EcbF-BcbF capsule bi 40.4 87 0.0019 25.0 5.6 42 118-159 28-85 (126)
251 PF14968 CCDC84: Coiled coil p 40.3 6.2 0.00013 37.0 -1.2 48 105-155 57-104 (336)
252 PF13417 GST_N_3: Glutathione 39.6 19 0.00041 25.2 1.5 53 104-163 2-55 (75)
253 PLN03098 LPA1 LOW PSII ACCUMUL 39.0 79 0.0017 30.9 6.0 66 72-140 273-338 (453)
254 PF02966 DIM1: Mitosis protein 38.9 70 0.0015 26.0 4.8 46 96-142 19-64 (133)
255 COG0560 SerB Phosphoserine pho 38.5 54 0.0012 28.4 4.5 39 117-155 80-118 (212)
256 PRK01018 50S ribosomal protein 38.4 1.1E+02 0.0024 23.2 5.7 51 123-173 25-79 (99)
257 TIGR02174 CXXU_selWTH selT/sel 37.9 69 0.0015 22.8 4.3 35 214-251 38-72 (72)
258 TIGR01428 HAD_type_II 2-haloal 37.3 95 0.0021 25.6 5.7 40 117-156 95-136 (198)
259 cd03053 GST_N_Phi GST_N family 37.1 51 0.0011 22.7 3.5 57 101-162 2-60 (76)
260 TIGR00591 phr2 photolyase PhrI 36.8 1.5E+02 0.0032 28.5 7.7 63 97-160 53-120 (454)
261 TIGR01490 HAD-SF-IB-hyp1 HAD-s 36.7 88 0.0019 25.8 5.4 36 119-154 92-127 (202)
262 PHA03398 viral phosphatase sup 36.5 75 0.0016 29.4 5.2 77 74-168 126-204 (303)
263 TIGR01761 thiaz-red thiazoliny 36.1 59 0.0013 30.5 4.6 48 108-162 10-57 (343)
264 KOG3414 Component of the U4/U6 35.9 1.8E+02 0.0038 23.8 6.6 55 96-154 22-76 (142)
265 TIGR01616 nitro_assoc nitrogen 35.8 1.1E+02 0.0025 24.2 5.7 64 101-173 3-70 (126)
266 TIGR01684 viral_ppase viral ph 35.6 1E+02 0.0023 28.5 6.0 42 117-158 149-192 (301)
267 TIGR01488 HAD-SF-IB Haloacid D 35.5 71 0.0015 25.6 4.6 37 118-154 77-113 (177)
268 PF10740 DUF2529: Protein of u 34.9 58 0.0012 27.7 3.9 89 71-172 59-152 (172)
269 cd03040 GST_N_mPGES2 GST_N fam 34.4 53 0.0011 22.8 3.2 20 102-121 3-22 (77)
270 cd03052 GST_N_GDAP1 GST_N fami 33.8 50 0.0011 23.1 3.0 57 102-163 2-60 (73)
271 cd00860 ThrRS_anticodon ThrRS 33.6 1.6E+02 0.0036 20.6 5.9 47 117-163 15-62 (91)
272 PRK13602 putative ribosomal pr 33.2 1.8E+02 0.0038 21.3 5.9 53 122-175 19-75 (82)
273 PF04278 Tic22: Tic22-like fam 33.2 49 0.0011 30.0 3.5 84 70-161 70-160 (274)
274 cd01453 vWA_transcription_fact 33.0 2E+02 0.0043 24.0 7.0 41 121-161 127-168 (183)
275 TIGR03556 photolyase_8HDF deox 33.0 1.8E+02 0.0039 28.2 7.6 47 114-161 52-98 (471)
276 PF13714 PEP_mutase: Phosphoen 32.5 2.2E+02 0.0048 25.2 7.5 75 100-174 138-216 (238)
277 PLN02954 phosphoserine phospha 32.4 94 0.002 26.2 5.0 39 117-155 87-125 (224)
278 PTZ00258 GTP-binding protein; 32.2 3.1E+02 0.0067 26.3 8.8 76 96-174 220-307 (390)
279 cd01821 Rhamnogalacturan_acety 32.1 1.9E+02 0.0042 23.7 6.8 27 114-140 91-117 (198)
280 PTZ00106 60S ribosomal protein 31.6 1.5E+02 0.0032 23.0 5.5 50 124-173 35-88 (108)
281 cd03056 GST_N_4 GST_N family, 31.4 67 0.0014 21.6 3.3 56 103-163 3-60 (73)
282 PF11948 DUF3465: Protein of u 31.2 72 0.0016 25.9 3.7 31 210-241 89-119 (131)
283 cd03420 SirA_RHOD_Pry_redox Si 31.0 1.2E+02 0.0026 21.1 4.6 51 103-159 3-57 (69)
284 PRK13600 putative ribosomal pr 30.8 2.1E+02 0.0045 21.3 5.9 53 121-174 20-76 (84)
285 PRK11320 prpB 2-methylisocitra 30.5 3.1E+02 0.0067 25.1 8.3 74 100-175 151-232 (292)
286 PF01206 TusA: Sulfurtransfera 30.5 1.5E+02 0.0033 20.3 5.0 54 102-160 3-59 (70)
287 smart00775 LNS2 LNS2 domain. T 30.3 1.7E+02 0.0038 23.8 6.1 51 117-167 30-89 (157)
288 PF02514 CobN-Mg_chel: CobN/Ma 30.1 1.6E+02 0.0035 32.1 7.2 73 98-173 73-162 (1098)
289 cd03031 GRX_GRX_like Glutaredo 30.0 2.2E+02 0.0048 23.3 6.6 46 108-160 15-67 (147)
290 cd03058 GST_N_Tau GST_N family 29.8 1E+02 0.0022 21.1 4.0 55 103-164 3-59 (74)
291 TIGR02463 MPGP_rel mannosyl-3- 29.7 1E+02 0.0022 26.0 4.7 47 121-167 23-70 (221)
292 PF09419 PGP_phosphatase: Mito 29.6 85 0.0018 26.4 4.1 80 74-155 17-109 (168)
293 PF04134 DUF393: Protein of un 29.5 1E+02 0.0022 23.2 4.3 17 106-122 4-20 (114)
294 PRK01158 phosphoglycolate phos 29.2 1.6E+02 0.0036 24.7 6.0 48 119-166 25-72 (230)
295 COG4469 CoiA Competence protei 29.0 13 0.00029 34.6 -0.9 35 78-117 2-36 (342)
296 TIGR00338 serB phosphoserine p 29.0 92 0.002 26.1 4.4 36 119-154 90-125 (219)
297 cd05017 SIS_PGI_PMI_1 The memb 28.6 2.3E+02 0.0051 21.5 6.3 51 96-154 42-92 (119)
298 KOG1615 Phosphoserine phosphat 28.4 1E+02 0.0023 27.0 4.5 46 119-164 93-144 (227)
299 cd03423 SirA SirA (also known 28.4 1.2E+02 0.0026 21.1 4.2 53 102-160 2-58 (69)
300 PF08235 LNS2: LNS2 (Lipin/Ned 28.3 1.7E+02 0.0036 24.4 5.6 79 79-167 2-89 (157)
301 TIGR01491 HAD-SF-IB-PSPlk HAD- 27.9 1.2E+02 0.0026 24.7 4.8 36 119-154 85-120 (201)
302 cd01460 vWA_midasin VWA_Midasi 27.8 63 0.0014 29.2 3.2 19 123-141 187-205 (266)
303 PRK10954 periplasmic protein d 27.8 64 0.0014 27.5 3.2 37 97-135 38-77 (207)
304 PF12017 Tnp_P_element: Transp 27.6 1.1E+02 0.0024 27.2 4.7 39 116-154 195-233 (236)
305 TIGR02319 CPEP_Pphonmut carbox 27.4 3.9E+02 0.0085 24.5 8.4 60 116-175 164-231 (294)
306 PF01408 GFO_IDH_MocA: Oxidore 27.4 1.5E+02 0.0032 22.1 4.9 35 129-165 24-58 (120)
307 PF04800 ETC_C1_NDUFA4: ETC co 27.3 58 0.0013 25.2 2.5 30 134-163 51-80 (101)
308 TIGR01482 SPP-subfamily Sucros 26.8 1.9E+02 0.0041 24.1 5.9 40 123-162 24-63 (225)
309 PF01297 TroA: Periplasmic sol 26.7 1E+02 0.0022 26.9 4.4 45 116-161 185-230 (256)
310 TIGR02765 crypto_DASH cryptoch 26.6 1.5E+02 0.0032 28.2 5.7 46 116-162 60-105 (429)
311 COG1636 Uncharacterized protei 26.6 1.6E+02 0.0034 25.6 5.2 60 106-171 9-81 (204)
312 PF05116 S6PP: Sucrose-6F-phos 26.5 1.2E+02 0.0025 26.7 4.7 58 110-167 15-74 (247)
313 PF10262 Rdx: Rdx family; Int 26.2 37 0.0008 24.3 1.2 35 214-251 40-74 (76)
314 PRK10826 2-deoxyglucose-6-phos 26.2 1.6E+02 0.0036 24.7 5.4 36 119-154 97-132 (222)
315 cd03050 GST_N_Theta GST_N fami 26.0 78 0.0017 21.8 2.9 58 102-164 2-61 (76)
316 KOG4530 Predicted flavoprotein 25.7 86 0.0019 26.6 3.4 28 94-121 116-143 (199)
317 TIGR03351 PhnX-like phosphonat 25.5 1.3E+02 0.0029 25.1 4.7 36 119-154 92-127 (220)
318 cd03025 DsbA_FrnE_like DsbA fa 25.3 70 0.0015 26.2 2.9 33 101-134 3-35 (193)
319 PF01583 APS_kinase: Adenylyls 25.2 2E+02 0.0044 23.8 5.6 58 113-170 57-117 (156)
320 KOG2741 Dimeric dihydrodiol de 24.9 1.2E+02 0.0025 28.8 4.4 44 111-154 13-56 (351)
321 TIGR03706 exo_poly_only exopol 24.8 3.3E+02 0.0071 24.6 7.4 55 119-173 58-120 (300)
322 PF11009 DUF2847: Protein of u 24.8 3.3E+02 0.0071 21.1 6.3 42 97-139 19-60 (105)
323 TIGR01449 PGP_bact 2-phosphogl 24.1 1.2E+02 0.0026 25.1 4.2 37 118-154 89-125 (213)
324 cd05013 SIS_RpiR RpiR-like pro 24.1 1.5E+02 0.0033 22.3 4.5 44 98-147 61-104 (139)
325 PRK06683 hypothetical protein; 24.0 2.8E+02 0.0061 20.3 5.6 51 124-175 21-75 (82)
326 PRK12702 mannosyl-3-phosphogly 23.8 1.4E+02 0.003 27.7 4.7 46 121-166 25-70 (302)
327 TIGR02461 osmo_MPG_phos mannos 23.8 2.3E+02 0.005 24.4 6.0 40 120-159 21-60 (225)
328 PF08282 Hydrolase_3: haloacid 23.7 2.2E+02 0.0047 23.6 5.7 47 119-165 20-66 (254)
329 cd00291 SirA_YedF_YeeD SirA, Y 23.7 2.2E+02 0.0047 19.2 4.8 33 129-161 25-59 (69)
330 PF02244 Propep_M14: Carboxype 23.7 84 0.0018 21.9 2.7 30 132-161 36-65 (74)
331 PRK09481 sspA stringent starva 23.4 1.3E+02 0.0028 25.3 4.2 63 99-168 9-72 (211)
332 COG0561 Cof Predicted hydrolas 23.2 1.5E+02 0.0032 25.8 4.7 51 118-168 24-74 (264)
333 PRK11031 guanosine pentaphosph 23.1 4.2E+02 0.0091 25.9 8.2 56 119-174 64-127 (496)
334 cd03049 GST_N_3 GST_N family, 23.1 2E+02 0.0042 19.5 4.5 53 102-161 2-57 (73)
335 TIGR00377 ant_ant_sig anti-ant 22.8 2.4E+02 0.0052 20.6 5.2 19 120-138 65-83 (108)
336 TIGR01670 YrbI-phosphatas 3-de 22.8 1.5E+02 0.0032 23.9 4.3 33 122-154 36-68 (154)
337 cd00738 HGTP_anticodon HGTP an 22.7 2.2E+02 0.0047 20.0 4.9 46 116-161 17-63 (94)
338 PRK00299 sulfur transfer prote 22.7 2.2E+02 0.0048 20.6 4.8 55 98-156 8-64 (81)
339 cd00786 cytidine_deaminase-lik 22.6 1.6E+02 0.0035 21.8 4.2 39 212-250 17-59 (96)
340 cd01284 Riboflavin_deaminase-r 22.6 1.4E+02 0.003 23.3 3.9 38 213-251 19-56 (115)
341 cd01137 PsaA Metal binding pro 22.6 1.7E+02 0.0036 26.4 5.0 39 116-154 212-251 (287)
342 PRK10854 exopolyphosphatase; P 22.5 4.7E+02 0.01 25.7 8.5 58 118-175 68-133 (513)
343 TIGR01487 SPP-like sucrose-pho 22.5 2.4E+02 0.0051 23.6 5.7 41 119-159 23-63 (215)
344 TIGR00099 Cof-subfamily Cof su 22.4 2.7E+02 0.0058 24.0 6.2 47 121-167 23-69 (256)
345 PF02541 Ppx-GppA: Ppx/GppA ph 22.2 1.4E+02 0.003 26.5 4.4 55 118-172 43-105 (285)
346 PLN02378 glutathione S-transfe 22.1 1.1E+02 0.0024 25.9 3.6 58 106-170 17-75 (213)
347 TIGR03143 AhpF_homolog putativ 22.1 1.2E+02 0.0026 30.0 4.3 43 96-140 475-517 (555)
348 TIGR01512 ATPase-IB2_Cd heavy 21.8 1.5E+02 0.0033 29.2 4.9 38 117-154 365-403 (536)
349 cd00859 HisRS_anticodon HisRS 21.7 2.7E+02 0.0059 19.0 5.7 47 115-161 13-60 (91)
350 TIGR02471 sucr_syn_bact_C sucr 21.7 2.7E+02 0.0059 23.7 6.0 49 117-166 18-68 (236)
351 cd00945 Aldolase_Class_I Class 21.4 4.3E+02 0.0094 21.2 7.2 26 126-151 138-169 (201)
352 TIGR02317 prpB methylisocitrat 21.4 5.3E+02 0.012 23.5 8.0 60 116-175 160-227 (285)
353 PF01740 STAS: STAS domain; I 21.2 3.4E+02 0.0073 20.2 5.9 54 98-154 49-102 (117)
354 TIGR01489 DKMTPPase-SF 2,3-dik 21.1 1.6E+02 0.0035 23.6 4.3 36 119-154 77-112 (188)
355 PF00626 Gelsolin: Gelsolin re 21.1 1.1E+02 0.0024 20.9 2.9 30 213-248 15-44 (76)
356 PRK15126 thiamin pyrimidine py 21.1 2.7E+02 0.0059 24.3 6.0 46 121-166 26-71 (272)
357 PF03129 HGTP_anticodon: Antic 21.0 3.1E+02 0.0068 19.5 5.4 48 115-162 13-62 (94)
358 KOG3110 Riboflavin kinase [Coe 21.0 37 0.00079 27.9 0.3 17 28-44 65-82 (153)
359 PRK10530 pyridoxal phosphate ( 21.0 1.7E+02 0.0036 25.3 4.6 46 121-166 27-72 (272)
360 PRK10200 putative racemase; Pr 20.9 1.8E+02 0.0038 25.4 4.7 40 115-154 60-100 (230)
361 TIGR00862 O-ClC intracellular 20.9 1.2E+02 0.0026 26.8 3.6 56 106-168 16-72 (236)
362 TIGR01511 ATPase-IB1_Cu copper 20.8 2.1E+02 0.0045 28.5 5.7 38 117-154 408-445 (562)
363 cd00861 ProRS_anticodon_short 20.8 2.7E+02 0.0059 19.7 5.1 47 115-161 16-63 (94)
364 cd01018 ZntC Metal binding pro 20.7 2.6E+02 0.0056 24.7 5.8 39 116-154 203-242 (266)
365 TIGR02320 PEP_mutase phosphoen 20.6 5.8E+02 0.013 23.2 8.1 59 116-174 168-237 (285)
366 PRK15317 alkyl hydroperoxide r 20.5 1.8E+02 0.0038 28.4 5.1 77 80-161 93-177 (517)
367 TIGR01509 HAD-SF-IA-v3 haloaci 20.4 2.9E+02 0.0063 21.9 5.6 37 117-154 88-124 (183)
368 PRK05370 argininosuccinate syn 20.4 2.6E+02 0.0057 27.3 6.0 71 89-169 4-81 (447)
369 PF01380 SIS: SIS domain SIS d 20.3 1.9E+02 0.0041 21.8 4.3 44 117-163 67-110 (131)
370 TIGR01668 YqeG_hyp_ppase HAD s 20.3 3.3E+02 0.007 22.2 6.0 38 117-154 46-84 (170)
371 PF12740 Chlorophyllase2: Chlo 20.3 2.2E+02 0.0048 25.7 5.2 34 99-137 18-51 (259)
372 cd01473 vWA_CTRP CTRP for CS 20.2 1.2E+02 0.0027 25.5 3.4 24 119-142 128-151 (192)
373 TIGR02253 CTE7 HAD superfamily 20.1 1.5E+02 0.0033 24.7 4.0 37 118-154 98-134 (221)
374 cd01285 nucleoside_deaminase N 20.1 1.7E+02 0.0037 22.2 3.9 37 213-251 17-58 (109)
375 TIGR02766 crypt_chrom_pln cryp 20.1 2.5E+02 0.0053 27.2 5.9 44 116-160 50-94 (475)
376 TIGR02886 spore_II_AA anti-sig 20.0 2.8E+02 0.0061 20.3 5.1 58 99-160 41-101 (106)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-29 Score=206.68 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=130.3
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
.+++|+.||||+|.|.+|++|+|+++. +++|||.||+..++|.|..|++++++.+++|++.|+.|++||+|+++..++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~-Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLR-GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhc-CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 367899999999999999999999994 5599999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 148 ~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
+++++++|++++|++++++++||+..... .++ ..+ ....+++||||++ |+
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~-~~g--------------------k~~--------~~~~R~TfvId~d-G~ 131 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKK-MYG--------------------KEY--------MGIERSTFVIDPD-GK 131 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccccc-cCc--------------------ccc--------ccccceEEEECCC-Ce
Confidence 99999999999999999999999975421 000 000 1246789999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 228 ISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 228 I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|+|+|+.-...+|+ +++|++|+
T Consensus 132 I~~~~~~v~~~~h~--~~vl~~l~ 153 (157)
T COG1225 132 IRYVWRKVKVKGHA--DEVLAALK 153 (157)
T ss_pred EEEEecCCCCcccH--HHHHHHHH
Confidence 99999666665554 59998875
No 2
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.96 E-value=1.2e-28 Score=199.25 Aligned_cols=149 Identities=32% Similarity=0.519 Sum_probs=123.9
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
.+|+|++.|.+|+.++++++.+++++||+|||++|||+|++|+++|+++++++++.|+++|+|+.++.+..++|.+++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 47999999999999999998777899999999999999999999999999999999999999999999888899999999
Q ss_pred CceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeEEEEEe
Q 025474 154 KGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 233 (252)
Q Consensus 154 ~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~~h~ 233 (252)
+||+++|+++.+|++||+.........+..+++ .+ +....+. ..++++++||+||+|++ |+|+|.|+
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~----~~~~~~~-~~~~~~~~p~~fvid~~-g~i~~~~~ 147 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWK-------NA----AIGFRGN-DEGDGLQLPGVFVIGPD-GTILFAHV 147 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhh-------Cc----ccccccC-CCCcccccceEEEECCC-CeEEEEec
Confidence 999999999999999999765433332332221 11 1111111 24566899999999998 69999998
Q ss_pred CC
Q 025474 234 DK 235 (252)
Q Consensus 234 ~~ 235 (252)
+.
T Consensus 148 ~~ 149 (149)
T cd02970 148 DR 149 (149)
T ss_pred CC
Confidence 73
No 3
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=4.4e-29 Score=209.54 Aligned_cols=190 Identities=36% Similarity=0.615 Sum_probs=155.5
Q ss_pred cCCCCCeeeeeeccCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHH
Q 025474 48 SPRRPSHVIASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD 127 (252)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~ 127 (252)
.|++|.+.++|..++....| ..++...+ .|..|+.|++++||++++.||.|.|+++|..||+++.+|.++.+-++
T Consensus 7 ~p~t~~~l~~s~i~pa~sgp--~~~q~~a~---l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld 81 (197)
T KOG4498|consen 7 APSTRLPLIASTIVPARSGP--MIGQLPAN---LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLD 81 (197)
T ss_pred CchhhhhHHHhhcccccCCc--cccccchh---hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHH
Confidence 34566677777766555443 33443333 77889999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccc
Q 025474 128 ASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDT 207 (252)
Q Consensus 128 ~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~ 207 (252)
++|+.+|+|++++..+.+.|+++.++..+||.||++.+|+.+++++.......|..+...+++ |..++.|+
T Consensus 82 ~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka--------~~~gv~gn- 152 (197)
T KOG4498|consen 82 ELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKA--------KAVGVEGN- 152 (197)
T ss_pred HhCCEEEEEeccceeecchhhcccCcceeEEEcCccceechhhhhcccccccccccHHHHHHH--------hhcccCCC-
Confidence 999999999999999999999999999999999999999999998853322223332222232 22345554
Q ss_pred cCCCccccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025474 208 VSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 208 ~~g~~~q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~~ 252 (252)
++|+++|+||.+++.+|+ +|.|.|++++++||+++++||++++.
T Consensus 153 ~~gd~~~~gG~~~V~~G~-~il~~h~dk~~gD~~~i~~Vl~v~~~ 196 (197)
T KOG4498|consen 153 LEGDGLLSGGVLVVGRGK-KILFIHVDKETGDHVPIDSVLQVVGK 196 (197)
T ss_pred cccChHHhCCeEEEecCC-eEEEEEecCCCCCCcCHHHHHHHhhc
Confidence 578889999999999984 99999999999999999999999864
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=2e-24 Score=175.48 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=127.6
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e 149 (252)
++|+.+|+|++.|.+|+.++++++.+++++||+|+|++||+.|..++++|+++++++++.|+++|+|+.++.+.+++|.+
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 81 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE 81 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHH
Confidence 67999999999999999999999844367888899999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeecCC--hHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 150 QTKFKGEVYADPN--HSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 150 ~~~~~fpll~Dp~--~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
+++++|++++|++ +++++.||+..... +...+.+||+|++ |+
T Consensus 82 ~~~~~~~~~~D~~~~~~~~~~~g~~~~~~-----------------------------------~~~~~~~~lid~~-G~ 125 (149)
T cd03018 82 ENGLTFPLLSDFWPHGEVAKAYGVFDEDL-----------------------------------GVAERAVFVIDRD-GI 125 (149)
T ss_pred hcCCCceEecCCCchhHHHHHhCCccccC-----------------------------------CCccceEEEECCC-CE
Confidence 9999999999988 99999998753210 0123479999998 69
Q ss_pred EEEEEeCCC--CCCCCCHHHHHHH
Q 025474 228 ISYIHRDKE--AGDDPDIQDILKA 249 (252)
Q Consensus 228 I~~~h~~~~--~~D~p~~~eIL~a 249 (252)
|+|.|.+.+ ..+.|+++++|+|
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 126 IRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred EEEEEecCCcccccchhHHHHhhC
Confidence 999999999 9999999998874
No 5
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=7.3e-24 Score=177.54 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=123.7
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCC-CHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFG-CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~-Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
..+|+.+|+|++.|.+|+.++++++ +++ .+|++||.+| ||.|..|+++|++.++++ .|++||+|+.|++..+++|
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk-~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGK-RKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCC-EEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence 4789999999999999999999998 444 4555555555 999999999999999998 3999999999999889999
Q ss_pred HHHhCCC-ceeeec-CChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCC
Q 025474 148 SEQTKFK-GEVYAD-PNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 148 ~e~~~~~-fpll~D-p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~gg 225 (252)
.++++++ +++++| +++.+.++||+..... + ..++..+++||||++
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~----~----------------------------~~g~~~r~tfvId~~- 140 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEG----P----------------------------LKGLLARAVFVLDEN- 140 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeeccc----c----------------------------cCCceeeEEEEECCC-
Confidence 9999998 799999 5679999999863210 0 011346689999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025474 226 SNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 226 g~I~~~h~~~~~~D~p~~~eIL~al~~ 252 (252)
|+|+|.|+..+..+.++++++|+++++
T Consensus 141 G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 141 NKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred CeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 699999999999999999999999974
No 6
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.92 E-value=5.9e-24 Score=185.39 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=123.2
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~ 148 (252)
+.+|+.+|+|++.+.+|+ +.+++.++++++||+|||+.|||.|..|+++|++++++|+++|++||+||.|+....++|.
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 468999999999999997 5665644667888899999999999999999999999999999999999999998777765
Q ss_pred H------HhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEe
Q 025474 149 E------QTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 149 e------~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid 222 (252)
+ ..+++||+++|+++++.++||+..... .+..++++||||
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 131 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES----------------------------------STATVRAVFIVD 131 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCccccc----------------------------------CCceeEEEEEEC
Confidence 4 246889999999999999999853210 012367999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++ |+|++.++....-.+ +++|+|++|+
T Consensus 132 ~~-G~Ir~~~~~~~~~gr-~~~eilr~l~ 158 (215)
T PRK13191 132 DK-GTVRLILYYPMEIGR-NIDEILRAIR 158 (215)
T ss_pred CC-CEEEEEEecCCCCCC-CHHHHHHHHH
Confidence 98 699999988766666 9999999885
No 7
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=5.4e-24 Score=181.47 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=122.8
Q ss_pred cccCCCCCcEEec-CCCC--eEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHH
Q 025474 70 DTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~ap~f~l~d-~~G~--~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~ 146 (252)
.+|+.+|+|++.+ .+|+ .++++++ +++++||+|||+.|||.|..|+++|++.+++|++.|++||+|+.++.+..++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 5699999999999 5787 5777787 5567888888899999999999999999999999999999999999988888
Q ss_pred HHHHh----CCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEe
Q 025474 147 FSEQT----KFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 147 f~e~~----~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid 222 (252)
|++.. +++||+++|++.++.++||+..... +...+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~-----------------------------------g~~~p~tfiID 126 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEA-----------------------------------GLADRGTFVID 126 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCcccCC-----------------------------------CceeeEEEEEC
Confidence 88654 6899999999999999999853210 01256899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++ |+|+|.|+...+..+ +.++||++|+
T Consensus 127 ~~-G~I~~~~~~~~~~~~-~~~~ll~~l~ 153 (187)
T TIGR03137 127 PE-GVIQAVEITDNGIGR-DASELLRKIK 153 (187)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999998777776 8999999874
No 8
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.92 E-value=7.7e-24 Score=182.80 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=122.2
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHH
Q 025474 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (252)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~ 150 (252)
+|+.+|+|++.+.+| .++++++.+++++||+|||+.|||.|..|+++|++++++|++.|++||+|+.++.+..++|.+.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 489999999999988 5899998544678899999999999999999999999999999999999999998887777765
Q ss_pred ------hCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCC
Q 025474 151 ------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 224 (252)
Q Consensus 151 ------~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~g 224 (252)
.+++||+++|+++.++++||+..... +.....+++||||++
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~---------------------------------~~~~~~r~~fiID~~ 126 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDA---------------------------------GSTLTVRAVFIIDPD 126 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccC---------------------------------CCCceeeEEEEECCC
Confidence 68999999999999999999853210 001235789999998
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 225 KSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 225 gg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|+|++.++......+ +.+|+|++++
T Consensus 127 -G~I~~~~~~~~~~gr-~~~ell~~l~ 151 (203)
T cd03016 127 -KKIRLILYYPATTGR-NFDEILRVVD 151 (203)
T ss_pred -CeEEEEEecCCCCCC-CHHHHHHHHH
Confidence 699999987655444 6899998875
No 9
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.91 E-value=1.3e-23 Score=183.16 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=122.5
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e 149 (252)
.+|+.+|+|++.+.+|+.+.++++ +++++||+|||+.|||.|..|++.|++++++|+++|++||+||.++.+..++|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999999998777776 5667889999999999999999999999999999999999999999977777654
Q ss_pred ------HhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeC
Q 025474 150 ------QTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 150 ------~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ 223 (252)
..+++||+++|+++++.++||+..... +....+++||||+
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~----------------------------------~~~~~R~tfIID~ 127 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK----------------------------------GTNTVRAVFIVDD 127 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCC----------------------------------CCceeeEEEEECC
Confidence 347899999999999999999753210 0013679999999
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025474 224 GKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 224 ggg~I~~~h~~~~~~D~p~~~eIL~al~~ 252 (252)
+ |+|++.++.....+ ..++|||+++++
T Consensus 128 d-G~Ir~~~~~p~~~g-r~~~eilr~l~~ 154 (215)
T PRK13599 128 K-GTIRLIMYYPQEVG-RNVDEILRALKA 154 (215)
T ss_pred C-CEEEEEEEcCCCCC-CCHHHHHHHHHH
Confidence 8 69999998655544 489999998853
No 10
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.91 E-value=1.3e-23 Score=187.91 Aligned_cols=147 Identities=12% Similarity=0.164 Sum_probs=125.0
Q ss_pred CCccccCCCCCcEEec-CCC--CeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHH
Q 025474 67 VSEDTKNLLDTVKVYD-VNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (252)
Q Consensus 67 ~~~~~g~~ap~f~l~d-~~G--~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~ 143 (252)
....+|+.+|+|++.+ .+| +.++|+++.+++++||+||++.|||.|..|+++|++++++|+++|++||+||.|++..
T Consensus 66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~ 145 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS 145 (261)
T ss_pred ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 3457999999999987 455 4689999877789999999999999999999999999999999999999999999877
Q ss_pred HHHHHHH-------hCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccc
Q 025474 144 ARTFSEQ-------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 144 ~~~f~e~-------~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~G 216 (252)
.++|.+. .+++||+++|+++++.++||+.... +..++
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~------------------------------------g~a~R 189 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE------------------------------------GFSHR 189 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcC------------------------------------Cceec
Confidence 8888763 5789999999999999999975320 12367
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 217 G~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++||||++ |+|+|.+.......+ +++|+|++|+
T Consensus 190 ~tFIID~d-G~I~~~~~~~~~~gr-~v~eiLr~l~ 222 (261)
T PTZ00137 190 ASVLVDKA-GVVKHVAVYDLGLGR-SVDETLRLFD 222 (261)
T ss_pred EEEEECCC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 89999998 699999976555554 8999999875
No 11
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.91 E-value=1.4e-23 Score=181.10 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=121.1
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~ 148 (252)
+.+|+.+|+|++.+.+| .++|+++ +++++||+|||+.|||+|..|+++|++++++|+++|++||+||.++.+..++|.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 36799999999999888 6999997 556678889999999999999999999999999999999999999987655554
Q ss_pred ----HHhC--CCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEe
Q 025474 149 ----EQTK--FKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 149 ----e~~~--~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid 222 (252)
++++ ++||+++|++++++++||+..... | ..++++||||
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~----------------------------g-------~~~p~~fiId 124 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENS----------------------------G-------ATVRGVFIID 124 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccC----------------------------C-------cEEeEEEEEC
Confidence 4555 689999999999999999843210 1 1367999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++ |+|+|.+.......+ +++|+|++++
T Consensus 125 ~~-G~I~~~~~~~~~~gr-~~~ellr~l~ 151 (202)
T PRK13190 125 PN-QIVRWMIYYPAETGR-NIDEIIRITK 151 (202)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999987666554 8999999875
No 12
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.91 E-value=2.2e-23 Score=168.78 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=121.1
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e 149 (252)
++|+.+|+|++.|.+|+.++|+++ +++++||.|++..|||.|+.+++.|+++++++ .|+.+|+|+.++.+.+++|.+
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~ 77 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCG 77 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHH
Confidence 369999999999999999999998 45566766666666899999999999999987 399999999999988999999
Q ss_pred HhCC-CceeeecCC-hHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 150 QTKF-KGEVYADPN-HSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 150 ~~~~-~fpll~Dp~-~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
+++. +|++++|++ +++.++||+..... +...+++||||++ |+
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~-----------------------------------~~~~~~~~iid~~-G~ 121 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDL-----------------------------------GLLARAVFVIDEN-GK 121 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccC-----------------------------------CccceEEEEEcCC-Ce
Confidence 9986 799999996 99999999843210 0125689999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHH
Q 025474 228 ISYIHRDKEAGDDPDIQDILKA 249 (252)
Q Consensus 228 I~~~h~~~~~~D~p~~~eIL~a 249 (252)
|++.|++....+.|+++++|++
T Consensus 122 I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 122 VIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred EEEEEECCCcccCCCHHHHhhC
Confidence 9999999999999999999864
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.91 E-value=3.3e-23 Score=162.67 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=112.1
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHH
Q 025474 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (252)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~ 150 (252)
+|+++|+|++.|.+|+.++|+++ +++++||+|++..|||.|+.++++|+++++++++.|+++|+|+.++.+.+++|.+.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 59999999999999999999999 66778888877779999999999999999999999999999999999999999999
Q ss_pred hCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeEEE
Q 025474 151 TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISY 230 (252)
Q Consensus 151 ~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~ 230 (252)
++++|+++.|++..+.++||+.... ...+.+++||||++ |+|+|
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~-----------------------------------~~~~~p~~~lid~~-g~I~~ 123 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEK-----------------------------------DTLALPAVFLIDPD-GKIRY 123 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETT-----------------------------------TSEESEEEEEEETT-SBEEE
T ss_pred hccccccccCcchHHHHHcCCcccc-----------------------------------CCceEeEEEEECCC-CEEEe
Confidence 9999999999999999999986432 01357899999998 69998
Q ss_pred E
Q 025474 231 I 231 (252)
Q Consensus 231 ~ 231 (252)
+
T Consensus 124 ~ 124 (124)
T PF00578_consen 124 A 124 (124)
T ss_dssp E
T ss_pred C
Confidence 5
No 14
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=4.7e-23 Score=176.20 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=122.1
Q ss_pred cccCCCCCcEEec---CCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHH
Q 025474 70 DTKNLLDTVKVYD---VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~ap~f~l~d---~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~ 146 (252)
.+|..+|+|++.. -+...++|+++ +++++||.||++.|||.|..|+++|++.+++|++.|++||+||.|+....++
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 5799999999765 34466777887 4568999999999999999999999999999999999999999999999999
Q ss_pred HHHHh----CCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEe
Q 025474 147 FSEQT----KFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 147 f~e~~----~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid 222 (252)
|++.. +++||+++|+++++.++||+..... ++..+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~-----------------------------------g~~~r~tfIID 126 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDE-----------------------------------GLADRATFVVD 126 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccC-----------------------------------CceeeEEEEEC
Confidence 99763 7899999999999999999843210 01246899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++ |+|+|.|+......+ +++|+|++|+
T Consensus 127 ~~-G~I~~~~~~~~~~~~-~~~eil~~l~ 153 (187)
T PRK10382 127 PQ-GIIQAIEVTAEGIGR-DASDLLRKIK 153 (187)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999998755554 8999999875
No 15
>PRK13189 peroxiredoxin; Provisional
Probab=99.90 E-value=4.8e-23 Score=180.42 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=123.1
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~ 148 (252)
+.+|+.+|+|++.+.+|+ +.++++++++++||+|||+.|||.|..|+++|++++++|++.|++||+||.++....++|.
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999985 7787766667799999999999999999999999999999999999999999998777776
Q ss_pred HH------hCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEe
Q 025474 149 EQ------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 149 e~------~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid 222 (252)
+. .+++||+++|+++++.++||+..... ++...+++||||
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 133 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK----------------------------------GTNTVRAVFIID 133 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc----------------------------------CCCceeEEEEEC
Confidence 64 25899999999999999999853210 001367999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++ |+|++.++......+ +++|+|++++
T Consensus 134 ~~-G~Ir~~~~~~~~~gr-~~~eilr~l~ 160 (222)
T PRK13189 134 PK-GIIRAILYYPQEVGR-NMDEILRLVK 160 (222)
T ss_pred CC-CeEEEEEecCCCCCC-CHHHHHHHHH
Confidence 98 699999987666555 7899998875
No 16
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.90 E-value=2.6e-23 Score=172.44 Aligned_cols=136 Identities=17% Similarity=0.247 Sum_probs=118.3
Q ss_pred ccCCCCCcEEecCC---CCeEeCCCccCCCcEEEEEEcCCCCHhHHHH-HHHHHHcHHHHHhCCC-EEEEEeCCCHHHHH
Q 025474 71 TKNLLDTVKVYDVN---GNAIPISDLWKDRKAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV-ALVLIGPGSVEQAR 145 (252)
Q Consensus 71 ~g~~ap~f~l~d~~---G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~e-l~~L~~~~~~l~~~Gv-~vV~Vs~~~~~~~~ 145 (252)
+|+.+|+|++.+.+ |+.++|+++++++++||+||++.|||.|..| ++.|++.+++|++.|+ .|++||.+++...+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 9999999966678999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHhCC--CceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeC
Q 025474 146 TFSEQTKF--KGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 146 ~f~e~~~~--~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ 223 (252)
+|++++++ +|++++|+++++.++||+...... .| .+.+..+++||||
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~---------------~~---------------~~~~~~R~~fiId- 129 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSA---------------AG---------------GGIRSKRYALIVD- 129 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccc---------------cC---------------CcceeeeEEEEEC-
Confidence 99999998 899999999999999999753210 00 0113467899999
Q ss_pred CCCeEEEEEeCCCCC
Q 025474 224 GKSNISYIHRDKEAG 238 (252)
Q Consensus 224 ggg~I~~~h~~~~~~ 238 (252)
+ |+|+|.|+...+.
T Consensus 130 ~-g~I~~~~~~~~~~ 143 (155)
T cd03013 130 D-GKVKYLFVEEDPG 143 (155)
T ss_pred C-CEEEEEEEecCCC
Confidence 5 5999999998764
No 17
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.90 E-value=7.4e-23 Score=171.81 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=121.3
Q ss_pred ccCCCCCcEEecCCC----CeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHH
Q 025474 71 TKNLLDTVKVYDVNG----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 71 ~g~~ap~f~l~d~~G----~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~ 146 (252)
+|+.+|+|++.+.+| +.++|+++ +++++||.|+++.|||.|..++++|++++++|++.|+.||+|+.++.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 589999999999887 79999998 4567777777799999999999999999999999999999999998877777
Q ss_pred HHHH-------hCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEE
Q 025474 147 FSEQ-------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 219 (252)
Q Consensus 147 f~e~-------~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~f 219 (252)
|.+. .+++|++++|++.+++++||+..... ++.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~-----------------------------------~~~~p~~~ 124 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEE-----------------------------------GVALRGTF 124 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccC-----------------------------------CceeeEEE
Confidence 8766 46899999999999999999854310 12356899
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 220 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 220 Vid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|||++ |+|+|.|++..+.+ ++.++||+.|+
T Consensus 125 lID~~-G~I~~~~~~~~~~~-~~~~~il~~l~ 154 (173)
T cd03015 125 IIDPE-GIIRHITVNDLPVG-RSVDETLRVLD 154 (173)
T ss_pred EECCC-CeEEEEEecCCCCC-CCHHHHHHHHH
Confidence 99998 69999999876654 47889998875
No 18
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.90 E-value=8.7e-23 Score=165.65 Aligned_cols=143 Identities=20% Similarity=0.308 Sum_probs=119.0
Q ss_pred cccCCCCCcEEec--CCCCeEeCCCccCCCcEEEEEEcCC-CCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHH
Q 025474 70 DTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~ap~f~l~d--~~G~~v~ls~l~~~~~vvlvF~R~~-~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~ 146 (252)
++|+.+|+|++.+ .+|+.++++++ +++++|++||++ |||+|+.+++.|.++++++++.|+.+|+|+.++...+++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~--~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF--KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG--TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh--CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 4799999999966 99999999996 455566677777 999999999999999999999999999999998877999
Q ss_pred HHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCC
Q 025474 147 FSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 226 (252)
Q Consensus 147 f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg 226 (252)
|+++++++|+++.|++..+.++||+..... . +.++..|..||||++ |
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-----~---------------------------~~~~~~P~~~lId~~-G 125 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPDGALAKALGVTIMED-----P---------------------------GNGFGIPTTFLIDKD-G 125 (146)
T ss_dssp HHHHTTTTSEEEEETTSHHHHHTTCEEECC-----T---------------------------TTTSSSSEEEEEETT-S
T ss_pred HHHhhCCCceEEechHHHHHHHhCCccccc-----c---------------------------ccCCeecEEEEEECC-C
Confidence 999999999999999999999999763311 0 011357789999998 6
Q ss_pred eEEEEEeCCCCCCCCCHHHHH
Q 025474 227 NISYIHRDKEAGDDPDIQDIL 247 (252)
Q Consensus 227 ~I~~~h~~~~~~D~p~~~eIL 247 (252)
+|+|.|.+....+.++++++|
T Consensus 126 ~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 126 KVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp BEEEEEESSBTTSHHSHHHHH
T ss_pred EEEEEEeCCCCCCCCChhhcC
Confidence 999999998883377777665
No 19
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.90 E-value=2e-22 Score=165.37 Aligned_cols=151 Identities=14% Similarity=0.192 Sum_probs=125.4
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
..+.|+.+|+|++.|.+|+.++++++ +++++||.|++..|||.|..+++.|.++++++++.|+++|+|+.++.+.+++|
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~ 81 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF 81 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 46789999999999999999999997 55566666666679999999999999999999999999999999999999999
Q ss_pred HHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 148 ~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
+++++++|++++|++..+.++||+...... .+ ..+. ...+.+||||++ |+
T Consensus 82 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~---------------~~------~~~~--------~~~~~~~lid~~-G~ 131 (154)
T PRK09437 82 AEKELLNFTLLSDEDHQVAEQFGVWGEKKF---------------MG------KTYD--------GIHRISFLIDAD-GK 131 (154)
T ss_pred HHHhCCCCeEEECCCchHHHHhCCCccccc---------------cc------cccc--------CcceEEEEECCC-CE
Confidence 999999999999999999999998532100 00 0000 113578999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 228 ISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 228 I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|++.|.+..+.++ .+++|++++
T Consensus 132 i~~~~~g~~~~~~--~~~~~~~~~ 153 (154)
T PRK09437 132 IEHVFDKFKTSNH--HDVVLDYLK 153 (154)
T ss_pred EEEEEcCCCcchh--HHHHHHHHh
Confidence 9999998777665 789999886
No 20
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=2.2e-22 Score=173.70 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=119.3
Q ss_pred cccCCCCCcEEecCC--CCe---EeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHH
Q 025474 70 DTKNLLDTVKVYDVN--GNA---IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~--G~~---v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~ 144 (252)
.+|+.+|+|++.+.. |+. ++|+++++++++||.||++.|||.|..|+++|++++++|+++|++||+||.|+....
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999999864 454 455555567788888888899999999999999999999999999999999998777
Q ss_pred HHHHHH----hC---CCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccce
Q 025474 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 217 (252)
Q Consensus 145 ~~f~e~----~~---~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG 217 (252)
++|.+. .+ ++||+++|+++++.++||+.... .+..+++
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~-----------------------------------~g~~~r~ 127 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPD-----------------------------------EGVALRG 127 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCC-----------------------------------CCcEEeE
Confidence 776543 43 68999999999999999975321 0123679
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 218 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 218 ~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
+||||++ |+|++.+.+...-.+ +++|+|++++
T Consensus 128 tfiID~~-G~I~~~~~~~~~~gr-~~~eilr~l~ 159 (200)
T PRK15000 128 SFLIDAN-GIVRHQVVNDLPLGR-NIDEMLRMVD 159 (200)
T ss_pred EEEECCC-CEEEEEEecCCCCCC-CHHHHHHHHH
Confidence 9999998 699999998766665 8999999875
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.89 E-value=3.5e-22 Score=160.22 Aligned_cols=138 Identities=13% Similarity=0.221 Sum_probs=120.4
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHh-C
Q 025474 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-K 152 (252)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~-~ 152 (252)
.+|+|++.|.+|+.++++++ +++++||+|++..||+.|..++++|.+++++|++.|+.+|+|+.++.+.+++|.+++ +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 47999999999999999998 566788888889999999999999999999999999999999999999999999999 8
Q ss_pred CCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeEEEEE
Q 025474 153 FKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 232 (252)
Q Consensus 153 ~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~~h 232 (252)
.+|++++|++..++++||+...... ++....+.+||+|++ |+|+|.|
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~~~--------------------------------~~~~~~p~~~lid~~-g~i~~~~ 126 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEKSA--------------------------------GGGLAARATFIIDPD-GKIRYVE 126 (140)
T ss_pred CCceEEECCChHHHHHcCCcccccc--------------------------------ccCceeEEEEEECCC-CcEEEEE
Confidence 9999999999999999998653210 112346789999997 6999999
Q ss_pred eCCCCCCCCCHHHH
Q 025474 233 RDKEAGDDPDIQDI 246 (252)
Q Consensus 233 ~~~~~~D~p~~~eI 246 (252)
.+.++ ++...+.+
T Consensus 127 ~~~~~-~~~~~~~~ 139 (140)
T cd02971 127 VEPLP-TGRNAEEL 139 (140)
T ss_pred ecCCC-CCcChHhh
Confidence 99999 77776655
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.89 E-value=4.1e-22 Score=159.98 Aligned_cols=139 Identities=18% Similarity=0.243 Sum_probs=116.5
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Q 025474 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (252)
Q Consensus 73 ~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~ 152 (252)
+.+|+|++.|.+|+.++++++ +++++||.|+++.|||.|..++++|.+.++++++.|+++|+|+.++.+.+++|.++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 578999999999999999998 4566677666689999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeEEEEE
Q 025474 153 FKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 232 (252)
Q Consensus 153 ~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~~h 232 (252)
++|++++|+++.++++||+..... + +.....+.+||+|++ |+|++.|
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~~~---------------------------~-----~~~~~~p~~~lid~~-G~v~~~~ 126 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGEKK---------------------------K-----KYMGIERSTFLIDPD-GKIVKVW 126 (140)
T ss_pred CCceEEECCccHHHHHhCCccccc---------------------------c-----ccCCcceeEEEECCC-CEEEEEE
Confidence 999999999999999999864310 0 011235689999998 6999999
Q ss_pred eCCCCCCCCCHHHHH
Q 025474 233 RDKEAGDDPDIQDIL 247 (252)
Q Consensus 233 ~~~~~~D~p~~~eIL 247 (252)
.+...+ -+++|+|
T Consensus 127 ~g~~~~--~~~~~~~ 139 (140)
T cd03017 127 RKVKPK--GHAEEVL 139 (140)
T ss_pred ecCCcc--chHHHHh
Confidence 886644 3444665
No 23
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.86 E-value=6.2e-21 Score=164.03 Aligned_cols=146 Identities=11% Similarity=0.094 Sum_probs=120.1
Q ss_pred CccccCCCCCcEEec----CCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHH
Q 025474 68 SEDTKNLLDTVKVYD----VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d----~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~ 143 (252)
+..+|+.+|+|++.+ .+|+.++|+++ +++++||+|+++.||+.|..++.+|.+++++|+++|++||+|+.++...
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA 83 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 357899999999664 56789999998 4567888888899999999999999999999999999999999999876
Q ss_pred HHHHHHH-------hCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccc
Q 025474 144 ARTFSEQ-------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 144 ~~~f~e~-------~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~G 216 (252)
..+|... .+++||+++|+++++.++||+.... ++...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~-----------------------------------~g~~~r 128 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE-----------------------------------QGVAYR 128 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccC-----------------------------------CCceEE
Confidence 6665421 1489999999999999999984321 012357
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 217 G~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++||||++ |+|++.++.... ...+++|+|++|+
T Consensus 129 ~~fiID~~-G~i~~~~~~~~~-~~r~~~e~l~~l~ 161 (199)
T PTZ00253 129 GLFIIDPK-GMLRQITVNDMP-VGRNVEEVLRLLE 161 (199)
T ss_pred EEEEECCC-CEEEEEEecCCC-CCCCHHHHHHHHH
Confidence 99999998 699999998655 5568999998875
No 24
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.85 E-value=1.1e-20 Score=148.62 Aligned_cols=115 Identities=31% Similarity=0.523 Sum_probs=90.4
Q ss_pred HHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhh
Q 025474 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQ 197 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~ 197 (252)
+|.+..++|+++|+++|+|++++.+.+++|++..++|||||+||++++|++||+.......+.+..+...+..+. +.
T Consensus 1 ~L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (115)
T PF13911_consen 1 QLSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIV---QS 77 (115)
T ss_pred ChhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHH---HH
Confidence 367789999999999999999999889999999999999999999999999999987655554444433333222 22
Q ss_pred cccccccccccCCCccccceEEEEeCCCCeEEEEEeCCC
Q 025474 198 DWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKE 236 (252)
Q Consensus 198 ~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~~h~~~~ 236 (252)
.++.++.++...|+.+|+||+||+|++ |+|+|+|++++
T Consensus 78 ~~~~~~~~~~~~g~~~q~GG~fv~d~~-g~v~~~hr~~~ 115 (115)
T PF13911_consen 78 AKNGGIPGNKDQGDGWQLGGTFVFDPG-GKVLYEHRDRH 115 (115)
T ss_pred HHHcCCCCcccCCCceecCeEEEEcCC-CeEEEEEecCC
Confidence 233344554225778999999999998 59999999975
No 25
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.9e-20 Score=151.69 Aligned_cols=177 Identities=14% Similarity=0.207 Sum_probs=140.0
Q ss_pred eccCCCCCCCccccCCcccccCCCCCeee-eeeccCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcC
Q 025474 28 ILPNQSPLWRPRHWNKTLKLSPRRPSHVI-ASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARH 106 (252)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~ 106 (252)
..|.-+..-|||.+-++ |++ -++.|..+ -.++.|+.+|||+|.|.||..|+|.++.+++++|+.||.+
T Consensus 32 ~vpkK~~ks~~~~~~~~---------~~~~~s~~Ssds--~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~ 100 (211)
T KOG0855|consen 32 SVPKKSSKSNFFGSTLT---------HSSYISPVSSDS--LKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPA 100 (211)
T ss_pred cccccccccCccccccc---------ceeeeccccccc--eeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEecc
Confidence 34555666677755443 333 23333222 2578999999999999999999999998888999999999
Q ss_pred CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHH
Q 025474 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLK 186 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~ 186 (252)
.-.|-|.++++.+++.|++|++.|++|+++|.|+....++|..++++||.+++||.+++.+.+|......
T Consensus 101 asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~---------- 170 (211)
T KOG0855|consen 101 ASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPF---------- 170 (211)
T ss_pred CCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999876431
Q ss_pred HHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 187 IIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 187 ~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
++......||++.||++..+ +.....-..+++|-++.+.
T Consensus 171 ------------------------gg~~~Rsh~if~kg~~k~~i--k~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 171 ------------------------GGLPGRSHYIFDKGGVKQLI--KNNQISPEVSVDEALKFLK 209 (211)
T ss_pred ------------------------CCcccceEEEEecCCeEEEE--EecccCccccHHHHHHHHh
Confidence 11234578999987544444 4445555566778777654
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.83 E-value=1.3e-19 Score=151.48 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=116.3
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC--------HHH
Q 025474 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--------VEQ 143 (252)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~--------~~~ 143 (252)
|+.+|+|++.|.+|+.++++++. +++++|++||++|||.|..++++|.++++++++.++++|+|+.++ .+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~-~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFA-DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 67899999999999999999974 456788888899999999999999999999999999999999864 678
Q ss_pred HHHHHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeC
Q 025474 144 ARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 144 ~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ 223 (252)
+++|.++++++|+++.|+++.+.+.||+.. .|.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----------------------------------------~P~~~lid~ 118 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC-----------------------------------------TPDFFLFDP 118 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCc-----------------------------------------CCcEEEECC
Confidence 999999999999999999999888888631 135899999
Q ss_pred CCCeEEEEEeCCCC----CCCCCHHHHHHHhh
Q 025474 224 GKSNISYIHRDKEA----GDDPDIQDILKACC 251 (252)
Q Consensus 224 ggg~I~~~h~~~~~----~D~p~~~eIL~al~ 251 (252)
+ |+|+|.+..... ..++..+++.++++
T Consensus 119 ~-G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 149 (171)
T cd02969 119 D-GKLVYRGRIDDSRPGNDPPVTGRDLRAALD 149 (171)
T ss_pred C-CeEEEeecccCCcccccccccHHHHHHHHH
Confidence 8 699988754332 35677888877764
No 27
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.82 E-value=2.2e-19 Score=154.78 Aligned_cols=89 Identities=18% Similarity=0.370 Sum_probs=82.6
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~ 141 (252)
+.+..+|+|++.|.+|+.++|+++ ++++||++||++|||+|++|++.|.++++++++.|++||+|++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~--kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSL--KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh--CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 457789999999999999999998 4678999999999999999999999999999999999999986 567
Q ss_pred HHHHHHHHHhCCCceeeec
Q 025474 142 EQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 142 ~~~~~f~e~~~~~fpll~D 160 (252)
+.+++|+++++++||+++|
T Consensus 92 e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred HHHHHHHHHcCCCceeeee
Confidence 8999999999999999987
No 28
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.81 E-value=4.2e-19 Score=156.82 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=102.9
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~ 141 (252)
.+|+.+|+|++.|.+|+.++|+++ ++++||++||++||+.|+.|+++|++++++++++|++||+|++ ++.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~--kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKF--KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh--CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 578999999999999999999998 4578888889999999999999999999999999999999996 456
Q ss_pred HHHHHHH-HHhCCCceeeecCC--h-HHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccce
Q 025474 142 EQARTFS-EQTKFKGEVYADPN--H-SSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 217 (252)
Q Consensus 142 ~~~~~f~-e~~~~~fpll~Dp~--~-~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG 217 (252)
+++++|+ ++++++||++.|.+ . .+...|++... ...+ +.|+. ....+-
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~----------------~~~~--------~~g~~----i~~~Pt 203 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKS----------------NAGG--------FLGDL----IKWNFE 203 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHH----------------hcCC--------ccCCc----cccCce
Confidence 7899997 68899999996533 2 33333322100 0000 00110 012457
Q ss_pred EEEEeCCCCeEEEEEeCC
Q 025474 218 IIVAGPGKSNISYIHRDK 235 (252)
Q Consensus 218 ~fVid~ggg~I~~~h~~~ 235 (252)
+||||++ |+|++.|.+.
T Consensus 204 tfLIDk~-GkVv~~~~G~ 220 (236)
T PLN02399 204 KFLVDKN-GKVVERYPPT 220 (236)
T ss_pred EEEECCC-CcEEEEECCC
Confidence 9999998 6999999864
No 29
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.81 E-value=1.3e-19 Score=149.12 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=76.7
Q ss_pred CCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHHHHHH
Q 025474 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (252)
Q Consensus 75 ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~~~~~ 146 (252)
+|+|++.|.+|+.++|+++ ++++||++||++||| |+.|+++|+++++++++.|+.+|+|+. ++.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~--~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKY--KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHh--CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 6899999999999999998 467888899999999 999999999999999999999999986 34678999
Q ss_pred HHHH-hCCCceeeecC
Q 025474 147 FSEQ-TKFKGEVYADP 161 (252)
Q Consensus 147 f~e~-~~~~fpll~Dp 161 (252)
|+++ ++++||+++|+
T Consensus 79 f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 79 FCETNYGVTFPMFAKI 94 (152)
T ss_pred HHHHhcCCCceeeeeE
Confidence 9987 89999999885
No 30
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.7e-19 Score=149.18 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=124.4
Q ss_pred ccccCCCCCcEEecC-CCC---eEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHH
Q 025474 69 EDTKNLLDTVKVYDV-NGN---AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~-~G~---~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~ 144 (252)
..+|+.+|+|++... .|+ .|+|+++.+ +++||+|+...+.+.|-.|+..++++|++|+++|++||+||.|+....
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 468999999999887 775 999999876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----hC---CCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccce
Q 025474 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 217 (252)
Q Consensus 145 ~~f~e~----~~---~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG 217 (252)
.+|.+. .+ ++|||++|+++++.++||+..... +..+.|
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~-----------------------------------g~a~R~ 126 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE-----------------------------------GLALRG 126 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC-----------------------------------CcceeE
Confidence 999876 55 789999999999999999865321 123669
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 218 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 218 ~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
+|||||+ |+|++..+....-.| +++|+|..++
T Consensus 127 ~FIIDp~-g~ir~~~v~~~~iGR-n~dEilR~id 158 (194)
T COG0450 127 TFIIDPD-GVIRHILVNPLTIGR-NVDEILRVID 158 (194)
T ss_pred EEEECCC-CeEEEEEEecCCCCc-CHHHHHHHHH
Confidence 9999998 699999988666333 5668877654
No 31
>PLN02412 probable glutathione peroxidase
Probab=99.80 E-value=5.2e-19 Score=148.21 Aligned_cols=134 Identities=11% Similarity=0.089 Sum_probs=100.2
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHHH
Q 025474 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQ 143 (252)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~~ 143 (252)
.+.+|+|++.|.+|+.++|+++ ++++||++||++|||.|++++++|+++++++++.|+.||+|+. ++.++
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~--~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQY--KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHh--CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHH
Confidence 4789999999999999999998 4678888899999999999999999999999999999999996 34455
Q ss_pred H-HHHHHHhCCCceeeec--CCh-HHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEE
Q 025474 144 A-RTFSEQTKFKGEVYAD--PNH-SSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 219 (252)
Q Consensus 144 ~-~~f~e~~~~~fpll~D--p~~-~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~f 219 (252)
+ +.|.++++++||++.| ++. .....|+....- . .+..+ .+....+.+|
T Consensus 84 ~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~----------------~--------~~~~~----~~v~~~p~tf 135 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAE----------------K--------GGLFG----DAIKWNFTKF 135 (167)
T ss_pred HHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhh----------------C--------CCCCC----CCcCCCCeeE
Confidence 5 4456899999999874 442 444433321110 0 00000 0011256899
Q ss_pred EEeCCCCeEEEEEeCCC
Q 025474 220 VAGPGKSNISYIHRDKE 236 (252)
Q Consensus 220 Vid~ggg~I~~~h~~~~ 236 (252)
|||++ |+|++.|.+..
T Consensus 136 lId~~-G~vv~~~~g~~ 151 (167)
T PLN02412 136 LVSKE-GKVVQRYAPTT 151 (167)
T ss_pred EECCC-CcEEEEECCCC
Confidence 99998 69999997533
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.80 E-value=1.3e-18 Score=148.60 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=105.5
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
+.++|+.+|+|++.|.+|+.+++++...+++.+|++||++|||+|+++++.+.+.++ +.|+++++|+.++.+.+++|
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~---~~~~~vv~Is~~~~~~~~~~ 121 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIAR---AEETDVVMISDGTPAEHRRF 121 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHH---hcCCcEEEEeCCCHHHHHHH
Confidence 468999999999999999999996432245567777789999999999999998764 35889999999999999999
Q ss_pred HHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 148 ~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
+++++++|+.|. .+.++.++||+. .+|..|++|++ |+
T Consensus 122 ~~~~~~~~~~~~-~~~~i~~~y~v~-----------------------------------------~~P~~~lID~~-G~ 158 (189)
T TIGR02661 122 LKDHELGGERYV-VSAEIGMAFQVG-----------------------------------------KIPYGVLLDQD-GK 158 (189)
T ss_pred HHhcCCCcceee-chhHHHHhccCC-----------------------------------------ccceEEEECCC-Ce
Confidence 999999987665 455555554431 14568999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhhC
Q 025474 228 ISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 228 I~~~h~~~~~~D~p~~~eIL~al~~ 252 (252)
|++.+. ..-...++++|+++++
T Consensus 159 I~~~g~---~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 159 IRAKGL---TNTREHLESLLEADRE 180 (189)
T ss_pred EEEccC---CCCHHHHHHHHHHHHc
Confidence 998632 2333558899988764
No 33
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.80 E-value=6.6e-19 Score=149.60 Aligned_cols=88 Identities=11% Similarity=0.243 Sum_probs=77.5
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC--------CHHH
Q 025474 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (252)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~--------~~~~ 143 (252)
++.+|+|++.|.+|+.++|+++ +++++||+|+|++|||+|++|+++|+++++++++.|+.||+|+++ +.+.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 6789999999999999999998 455677777799999999999999999999999999999999863 3467
Q ss_pred HHHHHH-HhCCCceeeec
Q 025474 144 ARTFSE-QTKFKGEVYAD 160 (252)
Q Consensus 144 ~~~f~e-~~~~~fpll~D 160 (252)
+++|.. +++++||+++|
T Consensus 96 ~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred HHHHHHHhcCCCCCCceE
Confidence 888874 78999999976
No 34
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=1.8e-18 Score=143.71 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=114.6
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHH
Q 025474 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR 145 (252)
Q Consensus 67 ~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~ 145 (252)
.....|+.+|+|++.+.+|+.++++++ +++.++++|++.||+.|+.+++.|.+..+++.+.++++++|+.++. +.++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~--~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDL--KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHc--CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 356789999999999999999999997 3455666777999999999999999999999999999999999765 6889
Q ss_pred HHHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCC
Q 025474 146 TFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 146 ~f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~gg 225 (252)
.|.++++++|+++.|++..+.++||+.. .|..||+|++
T Consensus 111 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----------------------------------------~P~~~lid~~- 148 (173)
T PRK03147 111 NFVNRYGLTFPVAIDKGRQVIDAYGVGP-----------------------------------------LPTTFLIDKD- 148 (173)
T ss_pred HHHHHhCCCceEEECCcchHHHHcCCCC-----------------------------------------cCeEEEECCC-
Confidence 9999999999999999999999888621 3468999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 226 SNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 226 g~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|+|++.+.+....+ ++++.|+.++
T Consensus 149 g~i~~~~~g~~~~~--~l~~~l~~~~ 172 (173)
T PRK03147 149 GKVVKVITGEMTEE--QLEEYLEKIK 172 (173)
T ss_pred CcEEEEEeCCCCHH--HHHHHHHHhc
Confidence 69998887744322 2445555543
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.78 E-value=1.4e-18 Score=142.96 Aligned_cols=84 Identities=11% Similarity=0.174 Sum_probs=76.3
Q ss_pred CCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHHHHHH
Q 025474 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (252)
Q Consensus 75 ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~~~~~ 146 (252)
+-+|++.|.+|++++|+++ +++++|+++|++|||+|..++++|+++++++++.|+.|++|++ ++.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~--~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY--RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHh--CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 4579999999999999998 4567888899999999999999999999999999999999985 66788999
Q ss_pred HHHH-hCCCceeeec
Q 025474 147 FSEQ-TKFKGEVYAD 160 (252)
Q Consensus 147 f~e~-~~~~fpll~D 160 (252)
|+++ ++++||+++|
T Consensus 80 f~~~~~~~~fp~~~d 94 (153)
T TIGR02540 80 FARRNYGVTFPMFSK 94 (153)
T ss_pred HHHHhcCCCCCccce
Confidence 9986 8999999987
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.78 E-value=1.3e-18 Score=138.47 Aligned_cols=107 Identities=13% Similarity=0.240 Sum_probs=93.4
Q ss_pred CCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC------CCHHHHHHHHHHhCCCceee
Q 025474 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTFSEQTKFKGEVY 158 (252)
Q Consensus 85 G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~------~~~~~~~~f~e~~~~~fpll 158 (252)
|+.++++++ +++++|++|+++|||+|+++++.|+++++++++.|+.+|+|+. ++.+.+++|+++++++||++
T Consensus 13 ~~~v~l~~~--~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQL--RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHh--CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 578999998 4567777788999999999999999999999999999999976 45789999999999999999
Q ss_pred ecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeEEEEEeCC
Q 025474 159 ADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDK 235 (252)
Q Consensus 159 ~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I~~~h~~~ 235 (252)
.|++..++++||+.. .|.+||||++ |+|+|.|.+.
T Consensus 91 ~D~~~~~~~~~~v~~-----------------------------------------~P~~~vid~~-G~v~~~~~G~ 125 (126)
T cd03012 91 NDNDYATWRAYGNQY-----------------------------------------WPALYLIDPT-GNVRHVHFGE 125 (126)
T ss_pred ECCchHHHHHhCCCc-----------------------------------------CCeEEEECCC-CcEEEEEecC
Confidence 999999998887521 2468999998 6999999874
No 37
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.77 E-value=6.6e-18 Score=143.60 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=98.3
Q ss_pred ccccCCCCCcEEecCCC--CeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC-CHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQAR 145 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G--~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~-~~~~~~ 145 (252)
..+|+.+|+|++.|.+| +.++++++. +++++|++||++||++|+++++.|.++ .+.|++||+|+.+ +.+.++
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~-~gk~vvv~FwatwC~~C~~e~p~l~~l----~~~~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLT-QGKPVLLNVWATWCPTCRAEHQYLNQL----SAQGIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHH----HHcCCEEEEEECCCCHHHHH
Confidence 46799999999999984 677766653 456788888899999999999999765 3469999999974 567899
Q ss_pred HHHHHhCCCce-eeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCC
Q 025474 146 TFSEQTKFKGE-VYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 224 (252)
Q Consensus 146 ~f~e~~~~~fp-ll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~g 224 (252)
+|.++++++|+ ++.|++..+.++||+.. .|.+||+|++
T Consensus 114 ~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-----------------------------------------~P~t~vid~~ 152 (185)
T PRK15412 114 SWLKELGNPYALSLFDGDGMLGLDLGVYG-----------------------------------------APETFLIDGN 152 (185)
T ss_pred HHHHHcCCCCceEEEcCCccHHHhcCCCc-----------------------------------------CCeEEEECCC
Confidence 99999999999 58899887777666421 3569999998
Q ss_pred CCeEEEEEeCCC
Q 025474 225 KSNISYIHRDKE 236 (252)
Q Consensus 225 gg~I~~~h~~~~ 236 (252)
|+|++.|.+..
T Consensus 153 -G~i~~~~~G~~ 163 (185)
T PRK15412 153 -GIIRYRHAGDL 163 (185)
T ss_pred -ceEEEEEecCC
Confidence 69999999844
No 38
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.75 E-value=1.1e-17 Score=134.60 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=104.6
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHh-HHHHHHHHHHcHHHHHhCC---CEEEEEeCC----CHHHHH
Q 025474 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASG---VALVLIGPG----SVEQAR 145 (252)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~-C~~el~~L~~~~~~l~~~G---v~vV~Vs~~----~~~~~~ 145 (252)
.+|+|++.|.+|+.++++++ +++++|++|+++||+. |+.+++.|++.++++.+.| +++++|+.+ +.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~--~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL--KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh--CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 47999999999999999998 4567778889999997 9999999999999998875 999999985 457899
Q ss_pred HHHHHhCCCceeeecCC---hHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEe
Q 025474 146 TFSEQTKFKGEVYADPN---HSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 146 ~f~e~~~~~fpll~Dp~---~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid 222 (252)
+|.++++.+|+++.|++ ..+.++||+........ . .+ .+....++.||||
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~----------------------~-~~----~~~~~~~~~~lid 131 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPED----------------------D-GD----YLVDHSAAIYLVD 131 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCC----------------------C-Cc----eeEeccceEEEEC
Confidence 99999999999999986 78889999764321000 0 00 0001356899999
Q ss_pred CCCCeEEEEEe
Q 025474 223 PGKSNISYIHR 233 (252)
Q Consensus 223 ~ggg~I~~~h~ 233 (252)
++ |+|++.|.
T Consensus 132 ~~-G~i~~~~~ 141 (142)
T cd02968 132 PD-GKLVRYYG 141 (142)
T ss_pred CC-CCEEEeec
Confidence 98 69999885
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.75 E-value=4.5e-17 Score=136.89 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=96.9
Q ss_pred CccccCCCCCcEEecCCCCeEeC--CCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPI--SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQA 144 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~l--s~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~ 144 (252)
+..+|+.+|+|++.|.+|+..++ +++. +++++|++||++|||.|+++++.|.+.+ +.|+++|+|+.++ .+..
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~~~ 107 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFI-QGKPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQNA 107 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhc-CCCEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChHHH
Confidence 35789999999999999985444 4553 4567777788999999999999987654 4689999999754 4677
Q ss_pred HHHHHHhCCCce-eeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeC
Q 025474 145 RTFSEQTKFKGE-VYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 145 ~~f~e~~~~~fp-ll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ 223 (252)
++|.++++++|+ ++.|++..+.++||+.. .|.+|++|+
T Consensus 108 ~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~-----------------------------------------~P~~~~id~ 146 (173)
T TIGR00385 108 LKFLKELGNPYQAILIDPNGKLGLDLGVYG-----------------------------------------APETFLVDG 146 (173)
T ss_pred HHHHHHcCCCCceEEECCCCchHHhcCCee-----------------------------------------CCeEEEEcC
Confidence 899999999998 67899988887776421 346999999
Q ss_pred CCCeEEEEEeCC
Q 025474 224 GKSNISYIHRDK 235 (252)
Q Consensus 224 ggg~I~~~h~~~ 235 (252)
+ |+|+|.|.+.
T Consensus 147 ~-G~i~~~~~G~ 157 (173)
T TIGR00385 147 N-GVILYRHAGP 157 (173)
T ss_pred C-ceEEEEEecc
Confidence 8 6999999873
No 40
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.71 E-value=1.8e-16 Score=125.66 Aligned_cols=117 Identities=18% Similarity=0.113 Sum_probs=95.1
Q ss_pred CCCCCcEEecCCC--CeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC-CCHHHHHHHHH
Q 025474 73 NLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSE 149 (252)
Q Consensus 73 ~~ap~f~l~d~~G--~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~-~~~~~~~~f~e 149 (252)
+.+|+|++.|.+| +.++++++ + ++.+|+.||++|||.|+++++.|.++.+++ +++||+|+. ++.+.+++|.+
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~-~-gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADL-K-GKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHHHc-C-CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999998 88888888 3 455666667999999999999999876553 599999996 56689999999
Q ss_pred HhCCCce-eeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCeE
Q 025474 150 QTKFKGE-VYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNI 228 (252)
Q Consensus 150 ~~~~~fp-ll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~I 228 (252)
+++++|+ ++.|++..+.+.||+. .+|.+|++|++ |+|
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~-----------------------------------------~~P~~~~ld~~-G~v 113 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVY-----------------------------------------GVPETFLIDGD-GII 113 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCC-----------------------------------------CCCeEEEECCC-ceE
Confidence 9999986 7789888777766652 14579999998 699
Q ss_pred EEEEeCCC
Q 025474 229 SYIHRDKE 236 (252)
Q Consensus 229 ~~~h~~~~ 236 (252)
++.+.+.-
T Consensus 114 ~~~~~G~~ 121 (127)
T cd03010 114 RYKHVGPL 121 (127)
T ss_pred EEEEeccC
Confidence 99988743
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.70 E-value=3.3e-16 Score=121.52 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-
Q 025474 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK- 154 (252)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~- 154 (252)
|+|++.|.+|+.++++++. +++.+|++||++||+.|+++++.|.++++++ +.++.+++|+.++.+..++|+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~-~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS-PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEccccc-CCCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7899999999999999984 3566666778999999999999999987776 457899999888889999999999985
Q ss_pred ceeeec
Q 025474 155 GEVYAD 160 (252)
Q Consensus 155 fpll~D 160 (252)
+|.+.|
T Consensus 79 ~p~~~~ 84 (114)
T cd02967 79 FPYVLS 84 (114)
T ss_pred CcEEec
Confidence 887754
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.67 E-value=1.1e-15 Score=115.73 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=84.9
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC--HHHHHHHHHHhCCC
Q 025474 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFK 154 (252)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~--~~~~~~f~e~~~~~ 154 (252)
+|++.+.+|+.+++.++ .++.+|++|++.||+.|+..++.|.++.+++.+.++.+++|+.++ .+.+++|.++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~--~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDL--KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHc--CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 57889999999999998 366788888899999999999999999999988899999999998 89999999999999
Q ss_pred ceeeecCChHHHHHcCCc
Q 025474 155 GEVYADPNHSSYEALSFV 172 (252)
Q Consensus 155 fpll~Dp~~~ly~alGv~ 172 (252)
++++.|++..+.+.||+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 79 FPVLLDPDGELAKAYGVR 96 (116)
T ss_pred cceEEcCcchHHHhcCcC
Confidence 999999988888877763
No 43
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.62 E-value=1e-14 Score=141.56 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=102.3
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC------CHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SVE 142 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~------~~~ 142 (252)
...++.+|+|++.|.+|+.+.++ ++++||++||++||++|+.+++.|.+++++++..++.||+|+.+ +.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 56778999999999999999886 46788899999999999999999999999988889999999862 235
Q ss_pred HHHHHHHHhCC-CceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEE
Q 025474 143 QARTFSEQTKF-KGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVA 221 (252)
Q Consensus 143 ~~~~f~e~~~~-~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVi 221 (252)
.+++|.+..++ .++++.|++..+.+.||+.. +|.+|||
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g-----------------------------------------iPTt~II 146 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISV-----------------------------------------YPSWAII 146 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCCCC-----------------------------------------cCeEEEE
Confidence 67778777776 48999999998888877531 4578999
Q ss_pred eCCCCeEEEEEeCCC
Q 025474 222 GPGKSNISYIHRDKE 236 (252)
Q Consensus 222 d~ggg~I~~~h~~~~ 236 (252)
|++ |+|++.+.+..
T Consensus 147 Dkd-GkIV~~~~G~~ 160 (521)
T PRK14018 147 GKD-GDVQRIVKGSI 160 (521)
T ss_pred cCC-CeEEEEEeCCC
Confidence 998 69999998854
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.62 E-value=9.2e-15 Score=114.83 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC--CHHHHHHHHHHhCC
Q 025474 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF 153 (252)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~--~~~~~~~f~e~~~~ 153 (252)
|+|++.|.+|+.+++.++ +++.+|++|++.||+.|+.+++.|.+++++ +.+++|+.+ +.+.+++|.+++++
T Consensus 1 p~f~l~~~~g~~~~~~~~--~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESL--SGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHh--CCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 789999999999999987 346666667799999999999999988765 677888765 46889999999999
Q ss_pred CceeeecCChHHHHHcCC
Q 025474 154 KGEVYADPNHSSYEALSF 171 (252)
Q Consensus 154 ~fpll~Dp~~~ly~alGv 171 (252)
+|+++.|++.++.+.|++
T Consensus 74 ~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 74 GFPVINDPDGVISARWGV 91 (123)
T ss_pred CccEEECCCcHHHHhCCC
Confidence 999999999888887775
No 45
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.61 E-value=7e-15 Score=125.42 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=75.7
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHHHH
Q 025474 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (252)
Q Consensus 73 ~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~~~ 144 (252)
+.+++|++.|.+|+.++|+++ ++++||+.++++||++|. ++++|+++++++++.|+.|++|.+ ++.+++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~--~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY--AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh--CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 468999999999999999998 456777777999999995 799999999999999999999987 567899
Q ss_pred HHHHH-HhCCCceeeec
Q 025474 145 RTFSE-QTKFKGEVYAD 160 (252)
Q Consensus 145 ~~f~e-~~~~~fpll~D 160 (252)
++|++ +++++||+++|
T Consensus 80 ~~f~~~~~g~~Fpv~~k 96 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSK 96 (183)
T ss_pred HHHHHHccCCCceeEEE
Confidence 99997 78999999954
No 46
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.7e-14 Score=119.51 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=125.1
Q ss_pred CCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHH
Q 025474 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (252)
Q Consensus 66 ~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~ 145 (252)
.+....|+.+|+|+.....| .|.+.|++++.+.||.-..+.+.|.|..|+..++++.++|+++|+++|+.|+|+.+..+
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 35578899999999776665 68999999999999988899999999999999999999999999999999999987665
Q ss_pred HHHHH-------hC--CCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccc
Q 025474 146 TFSEQ-------TK--FKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 146 ~f~e~-------~~--~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~G 216 (252)
.|.+. .. ++|||+.|+++++.-.|||..... . + -.+.+....
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e------------------~---------~--~~~~~~T~R 132 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEE------------------K---------K--NIGDGKTVR 132 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhH------------------c---------C--CCCCCceEE
Confidence 55543 34 899999999999999998754211 0 0 012335578
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025474 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 217 G~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~~ 252 (252)
++||+|++ .+|+..+..+.+..| ..+|||.++.|
T Consensus 133 avfvi~pd-kKirLs~lYP~ttGR-N~dEiLRvids 166 (224)
T KOG0854|consen 133 AVFVIDPD-KKIRLSFLYPSTTGR-NFDEILRVIDS 166 (224)
T ss_pred EEEEECCC-ceEEEEEEcccccCc-CHHHHHHHHHH
Confidence 99999999 499988877666554 57899988754
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.54 E-value=4.1e-14 Score=116.59 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=65.4
Q ss_pred CeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC-------CCEEEEEeCCCH-HHHHHHHHHhCCCce-
Q 025474 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-------GVALVLIGPGSV-EQARTFSEQTKFKGE- 156 (252)
Q Consensus 86 ~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~-------Gv~vV~Vs~~~~-~~~~~f~e~~~~~fp- 156 (252)
+.++|+++ ++++|+++||++|||+|+++++.|.+++.++++. ++.||+|+.+.. +.+++|.++++++++
T Consensus 16 ~~~~ls~~--kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~ 93 (146)
T cd03008 16 EREIVARL--ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLF 93 (146)
T ss_pred ccccHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCcee
Confidence 45677888 5789999999999999999999999999888754 699999999855 568899999986653
Q ss_pred --eeecCChHHHHHcCC
Q 025474 157 --VYADPNHSSYEALSF 171 (252)
Q Consensus 157 --ll~Dp~~~ly~alGv 171 (252)
+..|.+..+.++||+
T Consensus 94 ~p~~~~~~~~l~~~y~v 110 (146)
T cd03008 94 LPFEDEFRRELEAQFSV 110 (146)
T ss_pred ecccchHHHHHHHHcCC
Confidence 333334455555554
No 48
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.53 E-value=6.4e-14 Score=119.50 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=100.0
Q ss_pred ccccCCCCCcEEecC-----CCC-----eEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEE-----
Q 025474 69 EDTKNLLDTVKVYDV-----NGN-----AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL----- 133 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~-----~G~-----~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~v----- 133 (252)
...|+.+|.+.+.|- +|+ ..+.++| .+++.|++||++||+.|+.|++.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l--~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL--AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHc--CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 567888888887764 443 4455566 589999999999999999999999887 6778888
Q ss_pred -EEEeCCCH-----HHHHHHHHHhCCCce---eeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhccccccc
Q 025474 134 -VLIGPGSV-----EQARTFSEQTKFKGE---VYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFE 204 (252)
Q Consensus 134 -V~Vs~~~~-----~~~~~f~e~~~~~fp---ll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~ 204 (252)
++|+.++. ..++.|.++.+..|| ++.|++..+..+||+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~------------------------------- 145 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS------------------------------- 145 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC-------------------------------
Confidence 99999863 346667777787887 99999888888777532
Q ss_pred ccccCCCccccceE-EEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 025474 205 RDTVSRGGWQQGGI-IVAGPGKSNISYIHRDKEAGDDPDIQDILKAC 250 (252)
Q Consensus 205 g~~~~g~~~q~GG~-fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al 250 (252)
+|.+ ||+|++ |+|++.|.+.-..+ ++++++..+
T Consensus 146 ----------~P~T~fVIDk~-GkVv~~~~G~l~~e--e~e~~~~li 179 (184)
T TIGR01626 146 ----------EDSAIIVLDKT-GKVKFVKEGALSDS--DIQTVISLV 179 (184)
T ss_pred ----------CCceEEEECCC-CcEEEEEeCCCCHH--HHHHHHHHH
Confidence 2234 999998 69999999954333 444555544
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.53 E-value=6.3e-14 Score=146.42 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=109.4
Q ss_pred CccccCCCCCcEEec--CCCCeEeCC-CccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC---C--
Q 025474 68 SEDTKNLLDTVKVYD--VNGNAIPIS-DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP---G-- 139 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d--~~G~~v~ls-~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~---~-- 139 (252)
....|..+|+|...+ .+|+++++. ++ ++++||+.||++||+.|+.+++.|+++++++++.|+.||+|+. +
T Consensus 390 ~~~~g~~~p~f~~~~~~~~g~~~~l~~~l--kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 390 SKKTATKVPEFPPKLDWLNTAPLQFRRDL--KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred ccccCCcCCCCcccccccCCccccchhhc--CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 346799999999876 689999984 66 5688999999999999999999999999999999999999973 2
Q ss_pred -CHHHHHHHHHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceE
Q 025474 140 -SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGI 218 (252)
Q Consensus 140 -~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~ 218 (252)
+.+.+++|.++++++||++.|.+.++.+.||+. -+|..
T Consensus 468 ~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~-----------------------------------------~iPt~ 506 (1057)
T PLN02919 468 KDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVS-----------------------------------------SWPTF 506 (1057)
T ss_pred ccHHHHHHHHHHhCCCccEEECCchHHHHhcCCC-----------------------------------------ccceE
Confidence 346788999999999999999988887776642 14578
Q ss_pred EEEeCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q 025474 219 IVAGPGKSNISYIHRDKEAGDDPDIQDILKA 249 (252)
Q Consensus 219 fVid~ggg~I~~~h~~~~~~D~p~~~eIL~a 249 (252)
||+|++ |+|++.+.+.. +...++++++.
T Consensus 507 ilid~~-G~iv~~~~G~~--~~~~l~~~l~~ 534 (1057)
T PLN02919 507 AVVSPN-GKLIAQLSGEG--HRKDLDDLVEA 534 (1057)
T ss_pred EEECCC-CeEEEEEeccc--CHHHHHHHHHH
Confidence 999998 69998877633 33444555543
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.52 E-value=4.4e-14 Score=112.69 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=67.5
Q ss_pred EecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC--CCEEEEEeCCCH-HHHHHHHHHhCC---
Q 025474 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTKF--- 153 (252)
Q Consensus 80 l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~vV~Vs~~~~-~~~~~f~e~~~~--- 153 (252)
|.|.+|+.++++++ +++++|++||++||+.|+++++.|++.++++++. +++|++|+.+.. +..++|.+++++
T Consensus 3 l~~~~G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 3 LLRNDGGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred ccccCCCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 46889999999998 5678899999999999999999999999999876 789999999865 456667665432
Q ss_pred CceeeecCChHHHHHcCC
Q 025474 154 KGEVYADPNHSSYEALSF 171 (252)
Q Consensus 154 ~fpll~Dp~~~ly~alGv 171 (252)
+|+. .|++..+.++||+
T Consensus 81 ~~~~-~~~~~~~~~~~~v 97 (131)
T cd03009 81 PFSD-RERRSRLNRTFKI 97 (131)
T ss_pred ccCC-HHHHHHHHHHcCC
Confidence 2222 2344455555554
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.51 E-value=1.6e-13 Score=116.59 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=81.9
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~ 148 (252)
.......++|++. +|+.++++++ + |++||++|||+|+++++.|++.++++ |+.|++|+.+...
T Consensus 49 ~~~~~~~~~f~l~--dG~~v~lsd~--~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------ 111 (181)
T PRK13728 49 RTEKPAPRWFRLS--NGRQVNLADW--K----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------ 111 (181)
T ss_pred ccCCCCCCccCCC--CCCEeehhHc--e----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC------
Confidence 3455678888886 8999999998 2 66689999999999999999988875 7999999987542
Q ss_pred HHhCCCceeeec-CChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 149 EQTKFKGEVYAD-PNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 149 e~~~~~fpll~D-p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
...||++.| ++..+.+.||... ...|.+||+|++ |+
T Consensus 112 ---~~~fPv~~dd~~~~~~~~~g~~~---------------------------------------~~iPttfLId~~-G~ 148 (181)
T PRK13728 112 ---DTAFPEALPAPPDVMQTFFPNIP---------------------------------------VATPTTFLVNVN-TL 148 (181)
T ss_pred ---CCCCceEecCchhHHHHHhCCCC---------------------------------------CCCCeEEEEeCC-Cc
Confidence 368999885 5555555555310 125689999998 68
Q ss_pred EEE-EEeCC
Q 025474 228 ISY-IHRDK 235 (252)
Q Consensus 228 I~~-~h~~~ 235 (252)
+.+ .|++.
T Consensus 149 i~~~~~~G~ 157 (181)
T PRK13728 149 EALPLLQGA 157 (181)
T ss_pred EEEEEEECC
Confidence 875 68873
No 52
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.41 E-value=1.5e-12 Score=104.46 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=57.9
Q ss_pred CeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC--CCEEEEEeCCCH-HHHHHHHHHhC
Q 025474 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK 152 (252)
Q Consensus 86 ~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~vV~Vs~~~~-~~~~~f~e~~~ 152 (252)
++++++++ +++++|++||++||+.|+++++.|+++++++++. +++|++|+.+.. +.+++|.++++
T Consensus 8 ~~v~l~~~--~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~ 75 (132)
T cd02964 8 GVVPVSAL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP 75 (132)
T ss_pred ccccHHHh--CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC
Confidence 59999998 5688999999999999999999999999999875 799999998854 68889999886
No 53
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.7e-11 Score=100.01 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=112.1
Q ss_pred cccCCCCCcE---EecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHH
Q 025474 70 DTKNLLDTVK---VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~ap~f~---l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~ 146 (252)
.+..++|+|+ +.|-.-+.++|+++ .++-+|+.||...+...|-.|+..+++.+++|++.|.+|+++|.|+.....+
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 4456668875 45555578999998 4567788888889999999999999999999999999999999999988888
Q ss_pred HH----HHhCCC---ceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEE
Q 025474 147 FS----EQTKFK---GEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 219 (252)
Q Consensus 147 f~----e~~~~~---fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~f 219 (252)
|+ ++-|+. .|+++|+++++.+.||+.... +|..+.|.|
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~-----------------------------------~G~~lRglf 128 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKED-----------------------------------EGIALRGLF 128 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecC-----------------------------------CCcceeeeE
Confidence 86 344554 899999999999999986542 123467999
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 220 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 220 Vid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|||++ |.++..-.+ +..---+++|+|..++
T Consensus 129 IId~~-gi~R~it~N-DlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 129 IIDPD-GILRQITIN-DLPVGRSVDETLRLVQ 158 (196)
T ss_pred EEccc-cceEEeeec-ccCCCccHHHHHHHHH
Confidence 99998 577765555 3333346777776554
No 54
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-10 Score=94.92 Aligned_cols=139 Identities=10% Similarity=0.162 Sum_probs=116.3
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
.+++|+.+|+|++.+.+.+.++++++ .+++.||..|+.--.|.|-.+.+.+.+....+. ++.|+.||.|-+...++|
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRF 93 (158)
T ss_pred CCccCCcCCceEEEcCcccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhh
Confidence 36899999999999999999999998 566788888899999999999999999877654 489999999999999999
Q ss_pred HHHhCCC-ceeeec-CChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCC
Q 025474 148 SEQTKFK-GEVYAD-PNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 148 ~e~~~~~-fpll~D-p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~gg 225 (252)
+..+|+. .-.++| .++.+.++||+....+.+ .|+.-+++||+|+.
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL--------------------------------~gLlARaV~V~De~- 140 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPL--------------------------------AGLLARAVFVLDEN- 140 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccc--------------------------------cCeeeeEEEEEcCC-
Confidence 9999998 678888 466677888876432100 12346699999987
Q ss_pred CeEEEEEeCCCCCCCCC
Q 025474 226 SNISYIHRDKEAGDDPD 242 (252)
Q Consensus 226 g~I~~~h~~~~~~D~p~ 242 (252)
|+|.|...-.+..++|+
T Consensus 141 g~V~y~elv~eit~ePn 157 (158)
T COG2077 141 GKVTYSELVPEITEEPN 157 (158)
T ss_pred CcEEEEEccchhhcCCC
Confidence 69999999999988886
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.21 E-value=1.7e-10 Score=86.72 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHH-hCCCEEEEEeCCCH-HHHHHHHHHhCCCceeeec
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSV-EQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~-~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~fpll~D 160 (252)
+++++++||++||+.|+++++.|.++++++. +.++++|+|+.+.. +..+++.++.+.++..+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 66 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPF 66 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEET
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEee
Confidence 4788999999999999999999999999998 78899999999865 7888999988777765544
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.04 E-value=1.5e-09 Score=90.13 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=41.1
Q ss_pred CCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 84 ~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
.|+.+.++++ .|++||++|||+|+++++.|++.++++ |+.|++|+.++.
T Consensus 43 ~G~~~~l~~~------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDDY------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCCC------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 3777777665 288899999999999999999988765 789999998753
No 57
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3e-09 Score=87.69 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=114.8
Q ss_pred CccccCCCCC--cEEecCC-----CCeEeCCCccCCCcEEEEEEcCCCCHh-HHHHHHHHHHcHHHHHhCCCE-EEEEeC
Q 025474 68 SEDTKNLLDT--VKVYDVN-----GNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASGVA-LVLIGP 138 (252)
Q Consensus 68 ~~~~g~~ap~--f~l~d~~-----G~~v~ls~l~~~~~vvlvF~R~~~Cp~-C~~el~~L~~~~~~l~~~Gv~-vV~Vs~ 138 (252)
...+|+.+|+ .++.+.+ |.++++++|.++++++|+=.++++.|. |..+++.+.+..++|+++|++ ||.|+.
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 3577999999 4433222 338999999999999999999999999 688999999999999999997 888899
Q ss_pred CCHHHHHHHHHHhCCC--ceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccc
Q 025474 139 GSVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 139 ~~~~~~~~f~e~~~~~--fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~G 216 (252)
+++-..++|.+.++.. ..+++|++.++.+++|+.......+ .|+| . -+
T Consensus 88 nDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~-------------~g~R-------------S----~R 137 (171)
T KOG0541|consen 88 NDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKL-------------LGVR-------------S----RR 137 (171)
T ss_pred CcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeecccc-------------Cccc-------------c----cc
Confidence 9999999999998875 5699999999999999976543211 1111 1 11
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCC--CCCHHHHHHH
Q 025474 217 GIIVAGPGKSNISYIHRDKEAGD--DPDIQDILKA 249 (252)
Q Consensus 217 G~fVid~ggg~I~~~h~~~~~~D--~p~~~eIL~a 249 (252)
=..|++ + |+|.+..++.+..| --..+.||+.
T Consensus 138 ~a~vve-n-gkV~~~nvE~~g~~~t~ssa~~il~~ 170 (171)
T KOG0541|consen 138 YALVVE-N-GKVTVVNVEEGGTDFTVSSAEDILKQ 170 (171)
T ss_pred EEEEEe-C-CeEEEEEeccCCCceEEecHHHHhhc
Confidence 245666 3 59999999988774 3345555554
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.82 E-value=7.1e-08 Score=81.43 Aligned_cols=86 Identities=16% Similarity=0.260 Sum_probs=70.2
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCC-HhHHHHHHHHHHcHHHHHhC--CCEEEEEeCCC----HHH
Q 025474 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGC-VLCRKRADYLAAKKDVMDAS--GVALVLIGPGS----VEQ 143 (252)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~C-p~C~~el~~L~~~~~~l~~~--Gv~vV~Vs~~~----~~~ 143 (252)
.....++|++.|.+|+.++++++ +++++|++|-.+.| -.|-..+..|.+..+++.+. .+++|.|+.|+ ++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 45678889999999999999998 56777778888889 47999999999999998865 68899999874 578
Q ss_pred HHHHHHHhCCCceee
Q 025474 144 ARTFSEQTKFKGEVY 158 (252)
Q Consensus 144 ~~~f~e~~~~~fpll 158 (252)
+++|.+.++..+.-+
T Consensus 106 L~~Y~~~~~~~~~~l 120 (174)
T PF02630_consen 106 LKKYAKKFGPDFIGL 120 (174)
T ss_dssp HHHHHHCHTTTCEEE
T ss_pred HHHHHHhcCCCccee
Confidence 999999988766533
No 59
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.6e-08 Score=81.73 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=94.1
Q ss_pred ccccCCCCCcEEecC------CC-CeEeCCCccCCCcEEEEEEcCCCCHhHHH-HHHHHHHcHHHHHhCCCE-EEEEeCC
Q 025474 69 EDTKNLLDTVKVYDV------NG-NAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVA-LVLIGPG 139 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~------~G-~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~-el~~L~~~~~~l~~~Gv~-vV~Vs~~ 139 (252)
..+|+++|..++... +| ..++..+|.+++++||.=+++++.|.|.. +++.+.+++++|+++|+. |++|+..
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 468999999988754 23 45777888899999999999999999998 999999999999999997 8899999
Q ss_pred CHHHHHHHHHHhCCC--ceeeecCChHHHHHcCCcccc
Q 025474 140 SVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 140 ~~~~~~~f~e~~~~~--fpll~Dp~~~ly~alGv~~~~ 175 (252)
+.--..+|.+..+.. ..++.|.+.++.+++|+....
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~ 120 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDK 120 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeec
Confidence 999999999998887 569999999999999997553
No 60
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.60 E-value=1.2e-07 Score=85.73 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=42.4
Q ss_pred CCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 85 G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
.+...++++ .++.+|++|++.||++|+.+++.|++..+++ |+.|++|+.+..
T Consensus 156 ~~~~~l~~l--~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~ 207 (271)
T TIGR02740 156 QKDRVMKDL--AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGG 207 (271)
T ss_pred HHHHHHHHh--cCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCC
Confidence 344667777 4567888888999999999999999987765 799999998864
No 61
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.4e-07 Score=73.60 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHHHH
Q 025474 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (252)
Q Consensus 73 ~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~~~ 144 (252)
..+-||++.|.+|+.++|+++ +++||||---++-|.+-- +...|+.+|++++++|..|+++-+ ++.+++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~--~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDY--KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccccceeeccCCCCccHHHh--CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 346789999999999999998 678888888899999987 889999999999999999999964 567899
Q ss_pred HHHHHH-hCCCceeee
Q 025474 145 RTFSEQ-TKFKGEVYA 159 (252)
Q Consensus 145 ~~f~e~-~~~~fpll~ 159 (252)
++|++. ++.+|||+.
T Consensus 80 ~~fC~~~YgVtFp~f~ 95 (162)
T COG0386 80 AKFCQLNYGVTFPMFS 95 (162)
T ss_pred HHHHHhccCceeeeee
Confidence 999965 568899886
No 62
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.51 E-value=1.5e-06 Score=75.51 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=93.8
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCH-hHHHHHHHHHHcHHHHH---hCCCEEEEEeCCC----HHHHHHHH
Q 025474 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMD---ASGVALVLIGPGS----VEQARTFS 148 (252)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp-~C~~el~~L~~~~~~l~---~~Gv~vV~Vs~~~----~~~~~~f~ 148 (252)
+|++.|.+|+.+++.++ ++++.|+||-.+.|| .|-..+..|....+++. +..++++.|+.|+ ++.+++|.
T Consensus 49 ~f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 79999999999999999 556667777788888 69999999999998887 4457789998865 57788888
Q ss_pred H-HhCCCceeeec---CChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCC
Q 025474 149 E-QTKFKGEVYAD---PNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 224 (252)
Q Consensus 149 e-~~~~~fpll~D---p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~g 224 (252)
+ ...-.+.-++. ...++.++|++.........+ ....- ---...|++|++
T Consensus 127 ~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~-------------------~~y~~-------~Hs~~~~lid~~ 180 (207)
T COG1999 127 ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDS-------------------QNYTI-------DHSAGFYLIDAD 180 (207)
T ss_pred cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCC-------------------CCcee-------eeeeEEEEECCC
Confidence 7 32222333333 334566667665421100000 00000 013478999998
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 225 KSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 225 gg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
|++...+..... .++|++.++
T Consensus 181 -G~~~~~~~~~~~-----~~~i~~~l~ 201 (207)
T COG1999 181 -GRFLGTYDYGEP-----PEEIAADLK 201 (207)
T ss_pred -CeEEEEecCCCC-----hHHHHHHHH
Confidence 688877766544 667776654
No 63
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.46 E-value=2.3e-07 Score=77.03 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=74.5
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCCH-HHHHHHHHHhCC
Q 025474 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV-EQARTFSEQTKF 153 (252)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~~-~~~~~f~e~~~~ 153 (252)
...+.+.+|..+..++.+ .+++|.++|++.|||+||..-+.|.+.|+++++.+ ..||.||.|.. ++..+|.+.+..
T Consensus 14 g~~l~~~~~~~~~~~~~l-~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~ 92 (157)
T KOG2501|consen 14 GNRLRKQDGTEVLASEAL-QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHG 92 (157)
T ss_pred CCeeeccCCccchHhHhh-CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCC
Confidence 367888899888888555 45999999999999999999999999999998775 67999999865 677788776554
Q ss_pred C---ceeeecCChHHHHHcCCcc
Q 025474 154 K---GEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 154 ~---fpll~Dp~~~ly~alGv~~ 173 (252)
+ .|..-|-.+++-+.|++..
T Consensus 93 ~W~~iPf~d~~~~~l~~ky~v~~ 115 (157)
T KOG2501|consen 93 DWLAIPFGDDLIQKLSEKYEVKG 115 (157)
T ss_pred CeEEecCCCHHHHHHHHhcccCc
Confidence 4 2444445556666666653
No 64
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.46 E-value=1.1e-06 Score=68.93 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=67.6
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHHHHHHHH
Q 025474 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQARTFS 148 (252)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~~~~~f~ 148 (252)
+|++.|.+|+.++|+++ +++++||.-=++-|.+-. +..+|+++++++.+.|..|+++-+ ++.+++++|+
T Consensus 3 df~~~~~~G~~v~l~~y--~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY--KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG--TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc--CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 68999999999999998 455555555699999999 999999999999999999999965 3457899999
Q ss_pred HH-hCCCceeee
Q 025474 149 EQ-TKFKGEVYA 159 (252)
Q Consensus 149 e~-~~~~fpll~ 159 (252)
.. ++..|||+.
T Consensus 80 ~~~~~~~F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVTFPVFE 91 (108)
T ss_dssp CHCHT-SSEEBS
T ss_pred HhccCCcccceE
Confidence 87 688898875
No 65
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.46 E-value=1e-07 Score=77.92 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=61.3
Q ss_pred EEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC---Cc
Q 025474 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF---KG 155 (252)
Q Consensus 79 ~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~---~f 155 (252)
++.+.+++...+.+....++.+|++|++.||+.|+..++.|.++.+++.. .+.++.|..+... ...+++++++ |.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~~V~~iPt 79 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRYRVDGIPH 79 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHcCCCCCCE
Confidence 45566777777777766778888899999999999999999999888754 4788888877542 2234445554 44
Q ss_pred eeeecCChH
Q 025474 156 EVYADPNHS 164 (252)
Q Consensus 156 pll~Dp~~~ 164 (252)
-++.|++.+
T Consensus 80 ~v~~~~~G~ 88 (142)
T cd02950 80 FVFLDREGN 88 (142)
T ss_pred EEEECCCCC
Confidence 477786554
No 66
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.40 E-value=1.4e-06 Score=66.89 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+++.||+.|+++||+.|+..++.|.++.+++ .++.++.|..+......++++++++.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~ 70 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKII 70 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCC
Confidence 3678999999999999999999999998887 56889999987655556777776654
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.37 E-value=1.6e-06 Score=68.40 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=34.3
Q ss_pred CCC-cEEEEEEcCCCCHhHHHHHHHHH---HcHHHHHhCCCEEEEEeCCCH
Q 025474 95 KDR-KAVVAFARHFGCVLCRKRADYLA---AKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 95 ~~~-~vvlvF~R~~~Cp~C~~el~~L~---~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
+++ +.++++|++.||++|+...+.+. ++.+.++ .++.++.|..+..
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 456 77888889999999999999885 3444444 4677888877654
No 68
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.36 E-value=1.7e-06 Score=74.95 Aligned_cols=99 Identities=14% Similarity=0.264 Sum_probs=79.6
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEE--EEc----CCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHH
Q 025474 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVA--FAR----HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (252)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlv--F~R----~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~ 145 (252)
+..-.+..+...+|+ ++|.||++++..||| |++ ..+||.|...+..+......|.+.++.+++||..+.+++.
T Consensus 43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~ 121 (211)
T PF05988_consen 43 VEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIE 121 (211)
T ss_pred ccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHH
Confidence 334445666666776 999999987765444 332 3599999999999988889999999999999999999999
Q ss_pred HHHHHhCCCceeeecCChHHHHHcCC
Q 025474 146 TFSEQTKFKGEVYADPNHSSYEALSF 171 (252)
Q Consensus 146 ~f~e~~~~~fpll~Dp~~~ly~alGv 171 (252)
.|+++.|+.||.||.-+..+-..|++
T Consensus 122 afk~rmGW~~pw~Ss~gs~Fn~D~~~ 147 (211)
T PF05988_consen 122 AFKRRMGWTFPWYSSYGSDFNYDFGV 147 (211)
T ss_pred HHHHhcCCCceEEEcCCCcccccccc
Confidence 99999999999999765555444444
No 69
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.4e-05 Score=66.76 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=73.5
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--------CCHH
Q 025474 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVE 142 (252)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--------~~~~ 142 (252)
.-..+-+|++.|.+|+.|+|+.+ +++|||+--=++.|.+-..+-.+|.+++++++..|..|++.-+ ++.+
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~y--rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQY--RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHh--CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 34567899999999999999999 6778777778999999998888999999999999999999975 3446
Q ss_pred HHHHHH-HHhCCCceeee
Q 025474 143 QARTFS-EQTKFKGEVYA 159 (252)
Q Consensus 143 ~~~~f~-e~~~~~fpll~ 159 (252)
++..|+ .+++..|+|+.
T Consensus 88 Ei~~f~~~r~~~~f~if~ 105 (171)
T KOG1651|consen 88 EILNFVKVRYGAEFPIFQ 105 (171)
T ss_pred HHHHHHHhccCCCCccEe
Confidence 788877 56677787764
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.20 E-value=2e-06 Score=65.90 Aligned_cols=54 Identities=7% Similarity=0.166 Sum_probs=43.2
Q ss_pred cCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
.+.++.+++.|+++||+.|+..++.|.++++++....+.++.|..+..+.+++|
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~ 67 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRY 67 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHc
Confidence 345677888999999999999999999998888766678888888855544444
No 71
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.18 E-value=2.1e-05 Score=69.52 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=75.6
Q ss_pred CccccCCCCCcEEecCCCCe-EeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC------
Q 025474 68 SEDTKNLLDTVKVYDVNGNA-IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS------ 140 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~-v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~------ 140 (252)
....|..|||..|...+|+. .++.|+.++++.||++|...-||+=+..+.+++++.++|.+. ++.+.|....
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDG 150 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCC
Confidence 45789999999999999999 999999888878888888888999999999999999998752 3444443221
Q ss_pred ---------------H----HHHHHHHHHhCCCceeeecC-ChHHHHHcCC
Q 025474 141 ---------------V----EQARTFSEQTKFKGEVYADP-NHSSYEALSF 171 (252)
Q Consensus 141 ---------------~----~~~~~f~e~~~~~fpll~Dp-~~~ly~alGv 171 (252)
. ..++.+.++ ...+|++.|. +....++||.
T Consensus 151 W~~~~~~~~i~qh~sledR~~aA~~l~~~-~~~~pi~vD~mdN~~~~~YgA 200 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRAAKLLKEE-FPQCPIVVDTMDNNFNKAYGA 200 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHHHHHHHhh-CCCCCEEEEccCCHHHHHhCC
Confidence 1 234445544 3667888885 4555555553
No 72
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.07 E-value=6.3e-06 Score=63.22 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=35.8
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
+++++|+.|++.||++|+..++.|.++.+++. ++.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 46788888999999999999999999988875 5778888665
No 73
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.07 E-value=2.2e-05 Score=60.34 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=33.6
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHH--hCCCEEEEEeCCCHH-HHHHHHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD--ASGVALVLIGPGSVE-QARTFSE 149 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~--~~Gv~vV~Vs~~~~~-~~~~f~e 149 (252)
+++.+|++|...|||+|+..-+++.+..+-.+ +.++.++.+..+... ....+.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLD 60 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccc
Confidence 34555666679999999988888876443222 336888888887664 3334443
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.93 E-value=4.1e-05 Score=58.35 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=46.1
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHH---HHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCC-ce--eeecC
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GE--VYADP 161 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L---~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~-fp--ll~Dp 161 (252)
+.++.+|+.|++.||++|+...+.+ .+..+.+.+ ++.++.|..+.. ....++++++++. +| ++.|+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 4567778888899999999998877 455666655 788888887642 3356677776653 34 55665
No 75
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.93 E-value=3.6e-05 Score=59.88 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=40.5
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
.++++|++|++.||+.|+...+.+.++.++++..++.+..|..+..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 4578888999999999999999999999999877888899988754
No 76
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.88 E-value=3.7e-05 Score=59.44 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
++.++++|++.||+.|++..+.+.++..++++.++.+..|..+.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 46788888899999999999999999998987789999998875
No 77
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=4.2e-05 Score=66.64 Aligned_cols=93 Identities=15% Similarity=0.289 Sum_probs=78.7
Q ss_pred EecCCCCeEeCCCccCCCcEEEE--EEcC----CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 80 VYDVNGNAIPISDLWKDRKAVVA--FARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 80 l~d~~G~~v~ls~l~~~~~vvlv--F~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
+.|......+|.||++++..||| |+.+ .+||.|..-+..+......|+..++.+++|+-.+.+++..|..+.|+
T Consensus 56 ~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW 135 (247)
T COG4312 56 VFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGW 135 (247)
T ss_pred EeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCC
Confidence 44544458999999987655544 4433 48999999999999999999999999999999999999999999999
Q ss_pred CceeeecCChHHHHHcCCc
Q 025474 154 KGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 154 ~fpll~Dp~~~ly~alGv~ 172 (252)
.||.+++.+..+-..|.+.
T Consensus 136 ~f~w~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 136 QFPWVSSTDSDFNRDFQVS 154 (247)
T ss_pred cceeEeccCcccccccccc
Confidence 9999999998887777664
No 78
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.82 E-value=3.1e-05 Score=57.87 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=37.1
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
++.+|++|++.||+.|+...+.|.++..++.. .+.++.|..+...
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~ 56 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQP 56 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCH
Confidence 56788888999999999999999999888854 4677888777643
No 79
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.81 E-value=5.9e-05 Score=57.60 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGS 140 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~ 140 (252)
+.+.++++|++.||++|+...+.|.++..+++..+ +.+..+..+.
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~ 60 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence 34578899999999999999999999999887655 5566666654
No 80
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.76 E-value=4.2e-05 Score=60.47 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH--HHHHHHHHHh-CCCceeeecCChHHHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQT-KFKGEVYADPNHSSYE 167 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~--~~~~~f~e~~-~~~fpll~Dp~~~ly~ 167 (252)
+++.|+++|++.||+.|+...+.+.+...... .+..++.|..+.. ...+.|.... ++|.-++.|++.++-+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 45667778889999999999999888655432 4445666655533 2234443221 2677799998876544
No 81
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.76 E-value=2.9e-05 Score=58.45 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=45.8
Q ss_pred CccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCC-Cce-eeecCC
Q 025474 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPGSVEQARTFSEQTKF-KGE-VYADPN 162 (252)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~-Gv~vV~Vs~~~~~~~~~f~e~~~~-~fp-ll~Dp~ 162 (252)
++.++++.++++|++.||+.|+...+.+.+....+.+. .+.++.|..+.. ....+++++++ .+| ++.+++
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~Pt~~~~~~ 84 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYNVKGFPTFKYFEN 84 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCCCccccEEEEEeC
Confidence 34445567888999999999999999999998888753 345555666542 13344455555 344 333333
No 82
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.75 E-value=7.1e-05 Score=57.48 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=38.0
Q ss_pred CccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC-----CCEEEEEeCCCH
Q 025474 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-----GVALVLIGPGSV 141 (252)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~-----Gv~vV~Vs~~~~ 141 (252)
+..+..+.++++|++.||+.|+...+.+.+...++++. .+.+..|.++..
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 34455678889999999999999999999988877542 255666666643
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.70 E-value=2.9e-05 Score=58.32 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=37.7
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHh--CCCEEEEEeCCCHH
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~--~Gv~vV~Vs~~~~~ 142 (252)
.+++ +++.|++.||+.|+..++.+.+...+++. ..+.++.|.++...
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 15 AEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred hcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 3455 77778899999999999999999998876 46778888777543
No 84
>PRK10996 thioredoxin 2; Provisional
Probab=97.69 E-value=1.8e-05 Score=64.34 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=41.3
Q ss_pred eCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 89 ~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
.+.++.++++.++++|++.||+.|+...+.|.+...++.. ++.++.|..+...
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~ 96 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAER 96 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCH
Confidence 4445555678889999999999999999999998877643 5777788776543
No 85
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.66 E-value=4.5e-05 Score=57.60 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=38.9
Q ss_pred cCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
.+..++++++|++.||+.|+...+.|.+..+++.. ++.++.|..+...
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~ 57 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQ 57 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCH
Confidence 34677889999999999999999999998877753 5778888876543
No 86
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.66 E-value=6.3e-05 Score=57.00 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=44.3
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ce
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE 156 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fp 156 (252)
.+++.++++|++.||+.|+...+.+.++.++++. .+.+..|.++... .+++++++. +|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~---~~~~~~~v~~~P 74 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR---MLCRSQGVNSYP 74 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH---HHHHHcCCCccC
Confidence 4457788888999999999999999999888864 3788889888643 345555553 44
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.64 E-value=0.00016 Score=55.15 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=46.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ce--eeecCCh
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNH 163 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fp--ll~Dp~~ 163 (252)
.++.+|++|++.||+.|+...+.+.++..++. ..+.++.|.++.. ...++++++++. +| ++.+++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~-~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDED-KNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCcc-ccHHHHHHcCCCcCCEEEEEeCCC
Confidence 35668888899999999999999999888775 3578888888762 123344454543 33 4455554
No 88
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.64 E-value=0.00022 Score=56.24 Aligned_cols=47 Identities=9% Similarity=-0.059 Sum_probs=39.3
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
++.+.+|+.|++.||+.|+...+.+.++.+++++. +.++.|.++...
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 45678888889999999999999999999888643 788888887554
No 89
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.60 E-value=0.00019 Score=59.58 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
++.+|+.|++.||+.|+...+.|.++.+++...+++++.|..+...
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~ 92 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH
Confidence 4678888999999999999999999998887677999999987654
No 90
>PRK09381 trxA thioredoxin; Provisional
Probab=97.59 E-value=7.9e-05 Score=57.15 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=38.9
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~ 143 (252)
.+..+++.|++.|||.|+...+.|+++..++.. ++.++.|..+....
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG 66 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChh
Confidence 355678888899999999999999999988864 58889998886543
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.55 E-value=0.00014 Score=54.63 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHh-CCCEEEEEeCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGS 140 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~vV~Vs~~~ 140 (252)
++.++++|++.||+.|++..+.+.++..+++. .++.++.|..+.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 44678888899999999999999999888863 357777777766
No 92
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.55 E-value=9.5e-05 Score=55.18 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=48.1
Q ss_pred ccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC-CEEEEEeCCCHHHHHHHHHHhCCC-ce--eeecCChHH
Q 025474 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNHSS 165 (252)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G-v~vV~Vs~~~~~~~~~f~e~~~~~-fp--ll~Dp~~~l 165 (252)
..++++++++.|+..||+.|+...+.+.+....++..+ +.++.|..+.. ..+.+++++. +| ++.+++..+
T Consensus 9 ~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 9 IVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred HhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCCCCcCCEEEEecCCCcc
Confidence 33456788888899999999999999999888886654 66666666543 3344555544 34 455655543
No 93
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.55 E-value=0.00012 Score=58.37 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=44.2
Q ss_pred cCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH--------HHHHHHHHHhCCC
Q 025474 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--------EQARTFSEQTKFK 154 (252)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~--------~~~~~f~e~~~~~ 154 (252)
.+.+..++++|.+.|||+|+...+.|.+..++ .++.++-|..+.. +.+.+|.+++++.
T Consensus 20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 20 LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred HHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 34567788889999999999999999998775 5577888888732 2556676666543
No 94
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.54 E-value=0.00028 Score=53.51 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
.++.+++.|++.||+.|+...+.+.++..++. .++.+..|.++.... .++++++.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~---~~~~~~i~ 72 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYES---LCQQANIR 72 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchHH---HHHHcCCC
Confidence 34578888899999999999999999988874 357888888886433 34444543
No 95
>PTZ00051 thioredoxin; Provisional
Probab=97.47 E-value=7.1e-05 Score=56.04 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=36.3
Q ss_pred ccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
+.+.++.++++|++.||+.|+...+.|.++..++ .++.++.|..+.
T Consensus 14 ~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~ 59 (98)
T PTZ00051 14 TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDE 59 (98)
T ss_pred HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcc
Confidence 3445678888889999999999999998887754 357777777664
No 96
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.44 E-value=0.00043 Score=51.85 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHh-CCCEEEEEeCCCHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVE 142 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~vV~Vs~~~~~ 142 (252)
.++.++++|++.||+.|+...+.+.+..++++. ..+.+..|..+..+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 64 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND 64 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh
Confidence 346788889999999999999999999988876 46777888877543
No 97
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.44 E-value=0.00015 Score=53.26 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=48.4
Q ss_pred ccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHH-hCCCEEEEEeCCCHHHHHHHHHHhCCC-ce--eeecCC
Q 025474 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYADPN 162 (252)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~-~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fp--ll~Dp~ 162 (252)
..++++.++++|+..||+.|+...+.+.+....++ ..++.++.|..+. ...+++++++. +| ++.+++
T Consensus 11 ~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 11 LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCCCEEEEEcCC
Confidence 33455577888889999999999999999888876 5678888888775 33455555654 34 455555
No 98
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.44 E-value=0.0004 Score=55.03 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=35.6
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
.+.+|+.|++.||++|+.-.+.|.++.+++... +.++-|..+...
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~ 58 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVP 58 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCH
Confidence 567888899999999999999999988877432 567777777543
No 99
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.42 E-value=0.00032 Score=52.87 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=34.8
Q ss_pred EEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 100 vlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
+|+.|++.||+.|+...+.+.++..+++..++.+..|..+..
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~ 60 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence 568889999999999999999998877666788887776643
No 100
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.39 E-value=0.00065 Score=50.95 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=35.1
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
.++.+++.|++.||+.|+...+.+.+...++.. .+.++.|..+..
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~ 61 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH 61 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch
Confidence 355566677799999999999999998877753 477888877654
No 101
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.38 E-value=0.00023 Score=53.00 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
++.++++|++.||+.|+...+.|.++..++ ..++.++.|..+.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~ 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence 467888888999999999999999888776 4467777776553
No 102
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.37 E-value=0.00086 Score=52.51 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=40.1
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC-C-CEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-G-VALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~-G-v~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++.+++.|++.||+.|+...+.+.++.++++.. + +.+..|.++.. ....+++++++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhCCCC
Confidence 468888899999999999999999998888653 2 56666665432 233444454443
No 103
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.30 E-value=0.00043 Score=51.30 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++.++++|+..||+.|+...+.|.++.+++. .++.++.|..+... .+.+++++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~---~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENP---DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCH---HHHHHcCCC
Confidence 4577778889999999999999998887774 35888888877543 334455543
No 104
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.27 E-value=0.00058 Score=48.94 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
+.+.++++|+..||+.|++..+.|.+...+ ..++.++.|..+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 346678888899999999999999887766 5678899988876
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.27 E-value=0.00076 Score=53.43 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
++++||+.|.+.||++|+.-.+-|.++.+++.+. +.++-|..+. +.++.+++++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe---v~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK---VPVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc---cHHHHHhcCc
Confidence 4678899999999999999999999999888533 7788887774 4445555554
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.23 E-value=0.0012 Score=49.15 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=42.4
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
.+.+|++|...||+.|+...+.|.++..++.+ ++.++-|..+.. ..+++++++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhccCCC
Confidence 45566666778999999999999999999877 899999998854 4455555554
No 107
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.22 E-value=0.0015 Score=47.78 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=43.4
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC--CHHHHHHHHH-HhCCC-ceeeecCCh
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSE-QTKFK-GEVYADPNH 163 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~--~~~~~~~f~e-~~~~~-fpll~Dp~~ 163 (252)
++.+++.|++.||+.|+..++.|.+..+++.. ++.++.|... ..+....|.. -..+| +.++.|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 34444445699999999999999999888766 7888888885 3344444432 22333 334445544
No 108
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.14 E-value=0.00093 Score=53.27 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=35.0
Q ss_pred CcEEEEEEcC-------CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 97 RKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 97 ~~vvlvF~R~-------~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
++.+++.|++ .||++|+...+.|.+..+++. .++.++-|..+..
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~ 71 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDR 71 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCc
Confidence 3456666677 999999999999999888775 3588888888754
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.10 E-value=0.0022 Score=41.66 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=37.4
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
|++|+..||+.|++....+.+. +....++.++.|..+.......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 4677899999999999999988 56677899999999887655554
No 110
>PHA02278 thioredoxin-like protein
Probab=97.04 E-value=0.00091 Score=51.80 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=34.9
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
..++.+|+.|++.||++|+...+.|.++.+++. ..+.++-|..+.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 345678888899999999999999999876542 236677777774
No 111
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.98 E-value=0.003 Score=56.48 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=62.2
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCH-hHHHHHHHHHHcHHHHHhC-CCE--EEEEeCCC----HHHHHHH
Q 025474 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS-GVA--LVLIGPGS----VEQARTF 147 (252)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp-~C~~el~~L~~~~~~l~~~-Gv~--vV~Vs~~~----~~~~~~f 147 (252)
-.|+|.|.+|+.++=.+| .++.+|+.|-.+.|| .|=+|+..|....+++++. |+. -|+|++|+ ++.+++|
T Consensus 120 GpF~L~d~~Gk~~te~df--~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDF--LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred CceEEEecCCCeeccccc--ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 579999999999999999 567788888889999 5999999999999998765 433 47788765 5788888
Q ss_pred HHHhC
Q 025474 148 SEQTK 152 (252)
Q Consensus 148 ~e~~~ 152 (252)
.+++.
T Consensus 198 ~~eF~ 202 (280)
T KOG2792|consen 198 VSEFH 202 (280)
T ss_pred HHhcC
Confidence 88754
No 112
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.96 E-value=0.0022 Score=62.23 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
.++.+|+.|++.||++|+...+.|.++.++++..++.++.|..+..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4667888999999999999999999999999877899999988853
No 113
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0016 Score=50.83 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=43.7
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++.+|+.|.++||++|+.-.|-+.++..++.+ +.++-|..|. ...++++++..
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhcCce
Confidence 57788888999999999999999999888765 8888898887 66676666543
No 114
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.89 E-value=0.0024 Score=52.50 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+.++||+-|++.||++|+...+-|.++.+++.+. +.++-|..|... ++.+++++.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~---dla~~y~I~ 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP---DFNTMYELY 76 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH---HHHHHcCcc
Confidence 3567888888999999999999999988876433 677888888544 444455554
No 115
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.88 E-value=0.0034 Score=48.70 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=38.3
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
+.+|+.|++.||+.|+...+.|.++.+++. ++.++-|..+.. ..++++++
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~~i 74 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYLDI 74 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhcCC
Confidence 677888899999999999999999887763 577777776643 45555555
No 116
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.76 E-value=0.0087 Score=43.75 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=44.0
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHc--HHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~--~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp 161 (252)
++.|+++|.+.||+.|+..-..+-+. ..++-..++..+-|..++.+....+.. .++|.-++.||
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 45566666899999999998887443 233234678888888887765444433 56777777775
No 117
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.71 E-value=0.0046 Score=48.29 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
....++++|++.||++|+.-.+-|.+..++. ..++++.|..+... +..+++++
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~---~l~~~~~v 73 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDK---EKAEKYGV 73 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCH---HHHHHcCC
Confidence 3445888889999999999888888877664 34777888776532 34445443
No 118
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.71 E-value=0.0014 Score=61.95 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred CccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++.++++.++++|++.||+.|+...+.+.+....+++.+ +.++.|.++... +.++++++.
T Consensus 13 ~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~ 74 (462)
T TIGR01130 13 DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYGVS 74 (462)
T ss_pred HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCCCc
Confidence 334566778899999999999999999999988888776 778888877543 345555654
No 119
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.61 E-value=0.019 Score=50.84 Aligned_cols=74 Identities=15% Similarity=0.317 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC---CEEEEEeCCCH-HHHH--HHHHHhCCCceeee-c-CChHHHHH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG---VALVLIGPGSV-EQAR--TFSEQTKFKGEVYA-D-PNHSSYEA 168 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G---v~vV~Vs~~~~-~~~~--~f~e~~~~~fpll~-D-p~~~ly~a 168 (252)
+.|+||-+-.++|.+|..++..|..+..+|++.| +..++|..... ..+. .+.++..-.||||. | .+..+...
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~ 105 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWEL 105 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHHH
Confidence 5666666667799999999999999999999887 46778877654 3332 33333333389996 3 33444444
Q ss_pred cC
Q 025474 169 LS 170 (252)
Q Consensus 169 lG 170 (252)
|+
T Consensus 106 L~ 107 (238)
T PF04592_consen 106 LN 107 (238)
T ss_pred hC
Confidence 43
No 120
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.61 E-value=0.0046 Score=54.49 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=38.2
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..+++.|++.||+.|+...+.+.++.++++. .+.+..|..+.. ...++++++.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~---~~l~~~~~I~ 105 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA---LNLAKRFAIK 105 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc---HHHHHHcCCC
Confidence 4567778899999999999999999888764 355666655543 3455566654
No 121
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.54 E-value=0.0047 Score=44.37 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=33.0
Q ss_pred EEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 99 vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
|.|..|+..||++|....+.|.++..++.. .+.++-|..+..
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~ 42 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN 42 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC
Confidence 346678899999999999999998887743 377777876543
No 122
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.51 E-value=0.0044 Score=48.48 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=35.8
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
....+++.|++.||+.|+...+.|.++.+++ .+++++-|..+...
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~ 65 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAP 65 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCH
Confidence 3456777888999999999999999988765 35788888877643
No 123
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.45 E-value=0.0062 Score=48.57 Aligned_cols=46 Identities=4% Similarity=0.072 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCCCHh--HH--HHHHHHHHcHHH-HHhCCCEEEEEeCCCH
Q 025474 96 DRKAVVAFARHFGCVL--CR--KRADYLAAKKDV-MDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~--C~--~el~~L~~~~~~-l~~~Gv~vV~Vs~~~~ 141 (252)
...+||+||+++||++ |+ .-.+.|.+...+ +++.++.++-|..+..
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~ 76 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD 76 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 4569999999999987 99 444556565444 5667899999988854
No 124
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.44 E-value=0.0079 Score=59.86 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHH---HHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCC---CceeeecCChHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF---KGEVYADPNHSS 165 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L---~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~---~fpll~Dp~~~l 165 (252)
+++.|++.|++.||+.|+...+.. .+..++++ ++.++-|..++. ++.+++.++++. |.-++.|++.+.
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 356788888899999999876653 33444443 577777776543 355667777664 444777877654
No 125
>PLN02309 5'-adenylylsulfate reductase
Probab=96.41 E-value=0.0074 Score=58.48 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=39.7
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
.++.+||+|.+.||++|+...+.+.++.+++...++.++.|..+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 46778888899999999999999999999998888999999988
No 126
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.34 E-value=0.01 Score=47.51 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHH-HH--cHHHHHhCCCEEEEEeCCCH-HHHHHHHH-------HhCCCceeeecCChH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYL-AA--KKDVMDASGVALVLIGPGSV-EQARTFSE-------QTKFKGEVYADPNHS 164 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L-~~--~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e-------~~~~~fpll~Dp~~~ 164 (252)
+++.|+++|-+.||+.|+.--... .+ ..+.+ ..+..+|-|..+.. +..+.+.+ ..|+|.-++.||+.+
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 456677778999999999776643 22 23333 33566666655433 22232322 237888899999865
Q ss_pred H
Q 025474 165 S 165 (252)
Q Consensus 165 l 165 (252)
.
T Consensus 93 ~ 93 (124)
T cd02955 93 P 93 (124)
T ss_pred E
Confidence 4
No 127
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.30 E-value=0.0054 Score=48.38 Aligned_cols=47 Identities=9% Similarity=-0.036 Sum_probs=33.1
Q ss_pred CCCcEEEEEEcCCC--CHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 95 KDRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vvlvF~R~~~--Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
+.+..+|++|.+.| ||.|+.-.+.|.++.+++.+. +.++-|..+...
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~ 73 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ 73 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH
Confidence 33445566666775 999999999999988877533 556666666543
No 128
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.29 E-value=0.013 Score=51.15 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=33.9
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
++-.|++||++ .|++|+.+.+-|+...+++ |+.|+.||.|.
T Consensus 120 ~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG 160 (215)
T PF13728_consen 120 QKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDG 160 (215)
T ss_pred hCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCC
Confidence 44567777766 8999999999999987755 99999999985
No 129
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.28 E-value=0.023 Score=39.25 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=38.8
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCC-ceeeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GEVYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~-fpll~D 160 (252)
|.+|...|||+|+.....|. +.|+.+..|..++. +..+++.+.++.. .|.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 56788999999998765554 46888888877654 4556778887755 776665
No 130
>PTZ00102 disulphide isomerase; Provisional
Probab=96.19 E-value=0.0064 Score=58.18 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC-CEEEEEeCCCHHHH-HHHHHHhCCCceeeecCChH
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQA-RTFSEQTKFKGEVYADPNHS 164 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G-v~vV~Vs~~~~~~~-~~f~e~~~~~fpll~Dp~~~ 164 (252)
+.++.+|++|++.||+.|+...+.+.++..++++.+ +.+..|..+..+.. +.|. -.++|--++.+.+..
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~-v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS-WSAFPTILFVKAGER 443 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC-CcccCeEEEEECCCc
Confidence 456778888899999999999999999888876643 55555666543322 2232 224454455565544
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=96.18 E-value=0.0068 Score=57.99 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=43.0
Q ss_pred ccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 93 l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..++++.++++|++.||+.|++..+.+.+....+++.+ +.+.-|.++... ..++++++.
T Consensus 45 ~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~i~ 105 (477)
T PTZ00102 45 FITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFGVR 105 (477)
T ss_pred HHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcCCC
Confidence 34556788889999999999999999999888887655 556666665432 344555543
No 132
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.013 Score=48.58 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=34.6
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
.+.|||-|++.||.+|+.-.+.|.++..++ +--+++.-|..|+.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~ 104 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEH 104 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEccccc
Confidence 445666778999999999999999998887 33477777777654
No 133
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.017 Score=52.79 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
+..|||.||+.||+.|+.-.+.|.++..+++. .+.+.-|.+|...
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p 87 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEP 87 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcch
Confidence 34567778999999999999999999887643 2556666666543
No 134
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.72 E-value=0.016 Score=43.47 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=38.0
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..++++|...||+.|....+.|.++..+++.. +.++-|..+. ...+++.+++.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~---~~~~~~~~~i~ 65 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD---FGRHLEYFGLK 65 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh---hHHHHHHcCCC
Confidence 34556667999999999999999999998733 5666665554 33455666664
No 135
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.66 E-value=0.27 Score=41.08 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=79.0
Q ss_pred cccCCCCCcEEecC-----CCCeEeCCCccC---CCcEEEEEEcCCCCHhHHHHHHHHHHc-HHH-HHhCCCEEEEEeC-
Q 025474 70 DTKNLLDTVKVYDV-----NGNAIPISDLWK---DRKAVVAFARHFGCVLCRKRADYLAAK-KDV-MDASGVALVLIGP- 138 (252)
Q Consensus 70 ~~g~~ap~f~l~d~-----~G~~v~ls~l~~---~~~vvlvF~R~~~Cp~C~~el~~L~~~-~~~-l~~~Gv~vV~Vs~- 138 (252)
..|+++|.+.+.|. +|+.++...+-. .++|-|+++- +|-+--.+.-..|.+. ... |....++...|--
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 46888888887763 455665544311 3678777763 2333333333334332 111 4444566665543
Q ss_pred C-----CHHHHHHHHHHhC--CCce-eeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCC
Q 025474 139 G-----SVEQARTFSEQTK--FKGE-VYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSR 210 (252)
Q Consensus 139 ~-----~~~~~~~f~e~~~--~~fp-ll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g 210 (252)
+ +..-++..+++.. +|.. ++.|.+..+-+++++....
T Consensus 81 dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~----------------------------------- 125 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEES----------------------------------- 125 (160)
T ss_pred ccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCCC-----------------------------------
Confidence 2 2234555555544 5554 7889877666655554221
Q ss_pred CccccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 211 GGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 211 ~~~q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
-+.+|+|+. |+|.|.+-++-. ..+++++++.++
T Consensus 126 -----SaiiVlDK~-G~V~F~k~G~Ls--~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 126 -----SAIIVLDKQ-GKVQFVKEGALS--PAEVQQVIALLK 158 (160)
T ss_pred -----ceEEEEcCC-ccEEEEECCCCC--HHHHHHHHHHHh
Confidence 158899998 699999887443 345667777665
No 136
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.51 E-value=0.047 Score=38.46 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=31.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH-HHHh-C-CCceeee
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF-SEQT-K-FKGEVYA 159 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f-~e~~-~-~~fpll~ 159 (252)
+..|.+.|||+|++....|. +.|+..-.|..+......++ .+.. + ...|.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~-------~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLD-------KLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEE
Confidence 45678999999999766554 44666556666544444333 3332 3 3456553
No 137
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=95.16 E-value=0.12 Score=43.35 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=45.1
Q ss_pred cCCCCCcEEec-CCCCeEeCCCccC--CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHH-------------hCCCEEEE
Q 025474 72 KNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-------------ASGVALVL 135 (252)
Q Consensus 72 g~~ap~f~l~d-~~G~~v~ls~l~~--~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~-------------~~Gv~vV~ 135 (252)
|..+|++.+.. .+|+++.|.+.+. ++.-|++|--.--++..+..+..|.+..+.-. ..=++++.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 56788898887 4999999988764 35668887655565566665655555331111 01256888
Q ss_pred EeCCCH
Q 025474 136 IGPGSV 141 (252)
Q Consensus 136 Vs~~~~ 141 (252)
|.....
T Consensus 81 I~~~~~ 86 (167)
T cd02979 81 IHAAPR 86 (167)
T ss_pred EecCCc
Confidence 887754
No 138
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.13 E-value=0.038 Score=46.72 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=34.3
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
..||+.|++.||+.|+.-.+.|.++..++. +++++=|..+..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~ 125 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT 125 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch
Confidence 378888899999999999898988887763 578888887754
No 139
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.09 E-value=0.05 Score=39.37 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=27.7
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHH
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~ 143 (252)
+.|.+.|||.|..-.+.+.+..+++ |..+-.+..++.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~~ 41 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMNE 41 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHHH
Confidence 3445799999999999998887764 44455555555443
No 140
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.96 E-value=0.055 Score=37.49 Aligned_cols=51 Identities=6% Similarity=0.131 Sum_probs=32.7
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-Cce
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGE 156 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fp 156 (252)
|..|...|||+|.+-.+.|.++..+ ..++++.-|..+... +..++++. ..|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~~~---~l~~~~~i~~vP 54 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAEFP---DLADEYGVMSVP 54 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEcccCH---hHHHHcCCcccC
Confidence 5567789999998888888776443 345777777665432 23445554 244
No 141
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.95 E-value=0.051 Score=51.35 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=38.4
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC--CCEEEEEeCCCH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~vV~Vs~~~~ 141 (252)
.++.+|++|++.||+.|....+.+.++..++... ++.++-|.++..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 4677888999999999999999999999998763 677887877643
No 142
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.027 Score=54.95 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=47.5
Q ss_pred CCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCC-ce
Q 025474 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK-GE 156 (252)
Q Consensus 91 s~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~~~~~~~f~e~~~~~-fp 156 (252)
.++..+...++|-|.++||..|.+.++++.+....+++.| +.+.=|-+. +. ..++.++.++ ||
T Consensus 36 ~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~~-~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 36 KETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--EE-SDLASKYEVRGYP 101 (493)
T ss_pred HHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--hh-hhhHhhhcCCCCC
Confidence 3455566778888889999999999999999999999985 444444443 33 6777777765 55
No 143
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.75 E-value=0.16 Score=37.20 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=38.8
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhC---CCce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK---FKGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~---~~fp-ll~D 160 (252)
|..|-..|||+|.+-...|.++..++ .|+...-|..+.. ...+++.+..+ ..+| |+.|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~ 65 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD 65 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC
Confidence 45667899999999999999877653 4777777766532 23344444444 3567 5555
No 144
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.60 E-value=0.19 Score=34.15 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=37.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhC-CCce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~-~~fp-ll~D 160 (252)
|+.|...|||+|......| ++.|+..-.+..++. +..+++.+..+ ..+| ++.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 4567789999999876665 677888888888765 45555656545 4577 5544
No 145
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.60 E-value=0.087 Score=42.44 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=51.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|-..+|+.|++....| +++|+....|.. + +.+++..+.+..+.++.-+..+....|+.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCc
Confidence 5678899999999976555 455666555543 3 3478999999988888778889999999999875
No 146
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.55 E-value=0.17 Score=36.70 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=35.8
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-Cceeee
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYA 159 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~ 159 (252)
|+.|-..|||+|++--..|. +.|+....|..+......++.+.++. .+|++.
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred EEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 34567899999998877774 46777777777655555666666664 577443
No 147
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=94.44 E-value=0.029 Score=47.17 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=64.8
Q ss_pred CccccCCCCCcEEec-CCCCeEeCCCccC--CCcEEEEEEcCCCCHhHHHHHHHHHHcHH-------HHHhCC------C
Q 025474 68 SEDTKNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKD-------VMDASG------V 131 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d-~~G~~v~ls~l~~--~~~vvlvF~R~~~Cp~C~~el~~L~~~~~-------~l~~~G------v 131 (252)
.+.+|..+|+..+.. .||+++.|.+.+. ++.-|++|--..-.+-+...+..|.+..+ .|...+ +
T Consensus 29 ~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 29 GLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp TS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred CcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 568999999999877 5999999998764 45678888877777777666666666442 333322 7
Q ss_pred EEEEEeCCCHH---------HHHHHHHHhCCCc-eeeecC------ChHHHHHcCCccc
Q 025474 132 ALVLIGPGSVE---------QARTFSEQTKFKG-EVYADP------NHSSYEALSFVSG 174 (252)
Q Consensus 132 ~vV~Vs~~~~~---------~~~~f~e~~~~~f-pll~Dp------~~~ly~alGv~~~ 174 (252)
+++.|...+.. ..+.|.+++++.+ .||+|. ...+|+.||+...
T Consensus 109 ~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 109 DVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp EEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred EEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 89999887532 2333444455553 489985 4889999998653
No 148
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.43 E-value=0.12 Score=41.29 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=31.7
Q ss_pred CCcEEEEEE------cCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 96 DRKAVVAFA------RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vvlvF~------R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
++++.|+|+ -.+|||.|++.-+-+.+.... ...+..+|-|..++.
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r 69 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDR 69 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCH
Confidence 356777777 335999999999999997776 344788888888865
No 149
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.43 E-value=0.2 Score=38.65 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=43.1
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHH---cHHHHHhCCCEEEEEeCCCHHHHHHHHHHh---CCCceeeecC-ChH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSVEQARTFSEQT---KFKGEVYADP-NHS 164 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~---~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~---~~~fpll~Dp-~~~ 164 (252)
+++.|++++.+.||+.|..-..+.-. ..+.+. ...-.+.+..+++ +..+|.+.+ ++|.-++.|+ +.+
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCc-cHHHHHHHhCccCCCeEEEEeCccCc
Confidence 56889999999999999987765422 233343 3455555555553 344566555 4566688898 443
No 150
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.35 E-value=0.18 Score=36.05 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=35.9
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHHHH-HHHHhCC-Cce-eeec
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQART-FSEQTKF-KGE-VYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~-f~e~~~~-~fp-ll~D 160 (252)
+.|...|||+|++..+-|.++. +. ..++++-|..++ .+..++ +.+.++. .+| ++.|
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN 61 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 4566899999999999888865 11 126777777653 344444 4455554 466 5544
No 151
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.05 E-value=0.032 Score=45.17 Aligned_cols=72 Identities=8% Similarity=0.161 Sum_probs=42.5
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcH--HHHHhCCCEEEEEeCCCHH-HHHHHHHHhCCCceeeecCChHHHHHc
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKK--DVMDASGVALVLIGPGSVE-QARTFSEQTKFKGEVYADPNHSSYEAL 169 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~--~~l~~~Gv~vV~Vs~~~~~-~~~~f~e~~~~~fpll~Dp~~~ly~al 169 (252)
+++.|+++|-..||++|+.--..+-+.. .++-+.+.-+|-+-.+..+ .... ...++|.-++.|++.++...+
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEEECCCCCCcccc
Confidence 3556777788999999999888765432 2333334433334333221 1111 224677779999998665443
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.88 E-value=0.35 Score=33.14 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=35.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHHHHHHHHhC-CCceeeecCC
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-FKGEVYADPN 162 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~f~e~~~-~~fpll~Dp~ 162 (252)
+.+|...|||.|++-...|. +.|+....+..+. .+..++|.+.++ ..+|.+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~-------~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLD-------ERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHH-------HCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 45667899999998555444 4577777777664 344455655544 4578776644
No 153
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=93.61 E-value=0.57 Score=37.02 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 90 ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
|+++.-++++||+|-...--+.=..++..|.+....|.+..+.++.|..+.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~ 53 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDG 53 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCc
Confidence 445544567899999899999999999999999999999999988886554
No 154
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=93.55 E-value=0.12 Score=46.24 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=33.7
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
++--|++||| ..||+|..+++-|+...++ .|+.|++||.|.
T Consensus 143 ~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~---yg~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYR-GQDPIDGQLAQVINDFRDT---YGLSVIPVSVDG 183 (248)
T ss_pred hcceEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCC
Confidence 3456777777 6799999999999887764 499999999985
No 155
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.55 E-value=0.094 Score=39.35 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
++|+-|.+|-+.||++|..-.+-+.++..+. -++++..|..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~ 52 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGA 52 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhH
Confidence 6799899999999999998777776665443 24666666654
No 156
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.34 E-value=0.18 Score=39.21 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=49.8
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
.+|...+|++|++...-|.+ +|+....|.. + +.++++++.++.+.+..-+.......|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccc
Confidence 46788999999998776654 5655555443 3 3478999999999988877778888999999863
No 157
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.30 E-value=0.42 Score=48.21 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=60.6
Q ss_pred CccccCCCCCcEEec-CCCCeEeCCCccC--CCcEEEEEEcCCCCHhHHHHHHHHHHcH--------HHHHhCC------
Q 025474 68 SEDTKNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKK--------DVMDASG------ 130 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d-~~G~~v~ls~l~~--~~~vvlvF~R~~~Cp~C~~el~~L~~~~--------~~l~~~G------ 130 (252)
.+..|..+|++.+.. .+++++.|.+.+. ++..|++|--..-.+.....+..|.+.. ..|...+
T Consensus 462 ~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (634)
T PRK08294 462 GFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDAV 541 (634)
T ss_pred CCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCcE
Confidence 467899999999887 4888888876552 4567777765555566666666555543 1122222
Q ss_pred CEEEEEeCCCHHH---------HHHHHHHhCC-Cce-eeecC--ChHHHHHcCC
Q 025474 131 VALVLIGPGSVEQ---------ARTFSEQTKF-KGE-VYADP--NHSSYEALSF 171 (252)
Q Consensus 131 v~vV~Vs~~~~~~---------~~~f~e~~~~-~fp-ll~Dp--~~~ly~alGv 171 (252)
+.++.|....... ...|.+.+++ .+. +|+|. ....|+.||+
T Consensus 542 ~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 595 (634)
T PRK08294 542 IDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGI 595 (634)
T ss_pred EEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCC
Confidence 5677777664321 2233344444 443 66652 2345555554
No 158
>smart00594 UAS UAS domain.
Probab=93.30 E-value=0.26 Score=38.81 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHc---HHHHHhCCCEEEEEeCCCHHHHHHHHHHhC---CCceeeecCCh
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAK---KDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPNH 163 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~---~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~---~~fpll~Dp~~ 163 (252)
++|.+++++...||+.|+....++-.. .+.+ +.+.-++.+...+.+. .++.+.++ +|+-++.|++.
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 567899999999999999988875332 3334 4455555566655543 45666654 55567888775
No 159
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.28 E-value=0.22 Score=44.80 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=33.5
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
+--|++||| ..||+|+..++-|+...++ .|+.|++||.|..
T Consensus 151 ~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~ 191 (256)
T TIGR02739 151 SYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT 191 (256)
T ss_pred ceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 456777776 7799999999999887764 4999999999853
No 160
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=93.13 E-value=0.17 Score=43.84 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=29.6
Q ss_pred CCCcEEEEEEc--CCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 95 KDRKAVVAFAR--HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 95 ~~~~vvlvF~R--~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
+.+..+++|+- +.||+.|+...+-|.++.+++. ++++..|..+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 34445555554 4999999999999988877763 3555555554
No 161
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=93.01 E-value=0.28 Score=42.45 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=33.0
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
++|++|+.|+..||++|..-.+.+.++..+ .-.+.+.-|..+.. .+..+++++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~---~~~~~~~~V 184 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANEN---PDLAEKYGV 184 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCC---HHHHHHhCC
Confidence 568888889999999999766555554432 22355555555543 233345555
No 162
>PTZ00062 glutaredoxin; Provisional
Probab=93.00 E-value=0.18 Score=43.87 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
..+|+||++.|||.|+.-.+-|.++.+++. .++.+-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 557889999999999988888888877663 4666666544
No 163
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.90 E-value=0.76 Score=32.24 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=35.5
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHHHHHHHHhCC--Cce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF--KGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~f~e~~~~--~fp-ll~D 160 (252)
|..|-..+||+|.+-...|++ .|+..-.|..+. .+..+++.+..+. .+| |+.|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 456778999999987766654 567766666654 4555666666554 577 4444
No 164
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.84 E-value=0.19 Score=43.17 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
..|||.|++.||+.|+.-.+.|.++..++. .++++-|..+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 467788899999999999999999888763 4777777665
No 165
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.77 E-value=0.28 Score=37.49 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=49.6
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC----CCHHHHHHHHHHhCCCceeeecCChHHHHHcCCc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~----~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~ 172 (252)
|.+|...+|+.|++-...|. ++|+....|.. .+.++++++.++.+.+..-+..+....|+.+|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLE-------EHGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred CEEEECCCCHHHHHHHHHHH-------HcCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 35788999999998866654 45655444443 2357899999998888887778898999999986
No 166
>PHA02125 thioredoxin-like protein
Probab=92.60 E-value=0.25 Score=35.39 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.7
Q ss_pred EEEEcCCCCHhHHHHHHHHHH
Q 025474 101 VAFARHFGCVLCRKRADYLAA 121 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~ 121 (252)
|+.|.+.||+.|+.-.+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 677889999999988887754
No 167
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=92.56 E-value=1.8 Score=38.78 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=48.1
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCc-EEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC--CCEEEEEeCCCH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRK-AVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV 141 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~-vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~vV~Vs~~~~ 141 (252)
.+..-..|++...+.+|+.+++.+.++++. +|.+|++.++=..+..+...+.+.+. .+. .+++|-|+..+.
T Consensus 95 ~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~--~~~~~~~q~v~In~~e~ 168 (252)
T PF05176_consen 95 ADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFL--QEPYGRVQIVEINLIEN 168 (252)
T ss_pred HHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHh--hCCCCceEEEEEecchH
Confidence 345567899999999999999999987764 56666665555555555443322222 233 689999988754
No 168
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.54 E-value=0.61 Score=32.97 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-Cceeeec
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~D 160 (252)
.+|-..+||+|++-...|. +.|+..-.|..+......+..++.+. .+|++..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 5678899999999887775 46777777776654444444444564 6785554
No 169
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.50 E-value=0.36 Score=37.81 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=50.4
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC----CHHHHHHHHHHhCCCceeeecCChHHHHHcCCc
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~----~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~ 172 (252)
.+|-..+|+.|++-...|.+ +|+.+..|... +.+++.++.+..+..+.-+.+.....|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 46788999999998776655 56666666543 246888999998888888888999999999974
No 170
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=92.43 E-value=0.42 Score=37.31 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|...+|+.|++....|. ++|+.+..|.. + +.+++++|.+..+.++.-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLE-------EHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc
Confidence 45788999999998766654 45666666654 3 3478999999988888888899999999999865
No 171
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.29 E-value=0.13 Score=41.41 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCCce--eeecCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGE--VYADPN 162 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~fp--ll~Dp~ 162 (252)
.++.-++.+-..|||.|+..++-|.+..+.- -++++=.|..|.. +....|....+...| |+.|.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEAN--PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhC--CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3455555567999999999999999988753 2677777776643 445556553233344 777765
No 172
>PRK10824 glutaredoxin-4; Provisional
Probab=92.21 E-value=0.66 Score=36.74 Aligned_cols=57 Identities=9% Similarity=0.188 Sum_probs=34.5
Q ss_pred cEEEEEEcC----CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC-CHHHHHHHHHHhCCC-ce-eeecC
Q 025474 98 KAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFK-GE-VYADP 161 (252)
Q Consensus 98 ~vvlvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~-~~~~~~~f~e~~~~~-fp-ll~Dp 161 (252)
.-|++|..+ +|||+|.+-..-|.+. |+..-.|-.+ +.+....+.+..+++ +| ||.|-
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 346667777 5999999887766554 4333333333 334344455556664 77 88773
No 173
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.11 E-value=0.76 Score=32.29 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=32.8
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-Cce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fp-ll~D 160 (252)
|+.|-..|||+|.+-...|. +.|+....+..+.....+.+.+..+. .+| |+.|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~ 57 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFID 57 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEEC
Confidence 34556799999999866665 45666666666544444455444443 466 4444
No 174
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.04 E-value=0.57 Score=37.81 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=51.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC----CCHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~----~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|-..+|+.|++-... |+++|+....|.. -+.++++.|.+..+.++.-+.......|+.++...
T Consensus 2 i~iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch
Confidence 457788999999996544 5566776666653 24579999999998888877779999999999764
No 175
>PRK12559 transcriptional regulator Spx; Provisional
Probab=91.77 E-value=0.58 Score=37.71 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=51.0
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe--C--CCHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--P--GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs--~--~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|-..+|+.|++....| +++|+..-.|. . -+.++++.|.+..+.+..-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWL-------EENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc
Confidence 5678899999999976555 45566655544 3 34589999999988887777789999999999864
No 176
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.67 E-value=0.95 Score=34.35 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCcEEEEEEcC----CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHHHHHHHHhCC-Cce-eeec
Q 025474 95 KDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 95 ~~~~vvlvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~f~e~~~~-~fp-ll~D 160 (252)
..++ |++|..+ .|||+|.+--.-|. +.|+....|..+. .+..++..+..+. ++| |+.|
T Consensus 10 ~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~-------~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 10 KENP-VVLYMKGTPQFPQCGFSARAVQILK-------ACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred ccCC-EEEEEccCCCCCCCchHHHHHHHHH-------HcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3444 5566665 79999998766554 4566666666543 3333344444554 477 6655
No 177
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.13 E-value=1.5 Score=30.87 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhC-CCce-eeec
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGE-VYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~-~~fp-ll~D 160 (252)
..|-..|||+|++-..-|. ++|+....+..+.. +..+++.+..+ ..+| ++.|
T Consensus 4 ~ly~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~ 58 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLR-------EKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFN 58 (73)
T ss_pred EEEecCCChhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 4566799999998777665 46777777777643 34455665555 3466 4444
No 178
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=91.04 E-value=0.59 Score=34.48 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=36.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC-CHHHHHHHHHHhC---CCce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~-~~~~~~~f~e~~~---~~fp-ll~D 160 (252)
|+.|-..|||+|.+-...|.++..+. .++...-|..+ +....+++.+..+ ...| |+.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD 64 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC
Confidence 45667889999999888887754332 24555555554 2223445666666 4677 5555
No 179
>PRK10329 glutaredoxin-like protein; Provisional
Probab=90.78 E-value=1.5 Score=32.16 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=35.8
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeecCC
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp~ 162 (252)
|..|-..|||+|..--..| +++|+..-.|..+...+..+.....+. ..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 4456789999999865555 567888878877754444333333454 578666544
No 180
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.57 E-value=1.4 Score=31.30 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=33.5
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHH-HHHHHhCC-Cce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR-TFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~-~f~e~~~~-~fp-ll~D 160 (252)
|++|-..|||+|..-...|.++.- ..+.+=|..++. ...+ .+.+..+. .+| ++.|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~ 60 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIG 60 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 355668999999998888777533 345666665543 3443 34444555 466 4444
No 181
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.96 Score=33.13 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=33.8
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCE--EEEEeCCCHHHHHHHHHHhC--CCce-eeec
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTK--FKGE-VYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~--vV~Vs~~~~~~~~~f~e~~~--~~fp-ll~D 160 (252)
..|-..+||+|.+--..|. ++|+. .+-|..++.+..++++++.. .++| |+.|
T Consensus 4 ~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 4456678999998766655 56655 44445555557778887763 5688 4444
No 182
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.51 E-value=0.67 Score=35.32 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH----HHHHHHHHHhCC-Cce-eeec
Q 025474 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV----EQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 95 ~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~----~~~~~f~e~~~~-~fp-ll~D 160 (252)
++.++ ++| -.+|||+|.+--.-|. +.|+..-.|-.+.. +..+.+.+..+. ++| |+.|
T Consensus 6 ~~~~V-vvy-sk~~Cp~C~~ak~~L~-------~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 6 SEKAV-VIF-SRSSCCMCHVVKRLLL-------TLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred ccCCE-EEE-ECCCCHHHHHHHHHHH-------HcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 44453 344 4599999997666444 44554444444322 223344444444 477 5655
No 183
>PRK10638 glutaredoxin 3; Provisional
Probab=90.45 E-value=1.3 Score=32.11 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=34.4
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCC-ceee-ec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GEVY-AD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~-fpll-~D 160 (252)
|.+|-..|||+|++-...|.+ +|+....+..+.. +..+++.+..+.. +|.+ .|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~ 59 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFID 59 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 446678999999988777654 4566555655443 3446677766654 6744 44
No 184
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=0.46 Score=44.70 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=38.4
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ce
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE 156 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fp 156 (252)
....++.|...||..|.+.++.+.++...++. -+.+..|.++ ..+..++++++. ||
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~---~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD---EHKDLCEKYGIQGFP 103 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch---hhHHHHHhcCCccCc
Confidence 44555666799999999999999988777766 2344444444 455566666655 45
No 185
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.36 E-value=0.46 Score=35.41 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=34.3
Q ss_pred CccCCCcEEEEEEcC----CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHH-HHHHHHhCC-Cce-eeec
Q 025474 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 92 ~l~~~~~vvlvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~-~~f~e~~~~-~fp-ll~D 160 (252)
++.++.++ ++|.-+ .|||+|.+-..-|.+ .|+..-.|..+...++ ++..+..+. .+| |+.|
T Consensus 3 ~~i~~~~v-vvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 3 KLIKENPV-VLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred hhhccCCE-EEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 34445554 455554 699999987666654 4455555554333334 444454453 467 5555
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=90.21 E-value=1.5 Score=29.60 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=34.0
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH-HHHHHHHHhCC-Cceeeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~-~~~~f~e~~~~-~fpll~D 160 (252)
|+.|-..|||+|++-...|.+ .|+...-+..+... ..+++.+..+. .+|++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 345668999999988777654 45666666666543 34555666664 5775543
No 187
>PRK06184 hypothetical protein; Provisional
Probab=90.06 E-value=2.6 Score=40.82 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=48.4
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCC-CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKD-RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~-~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~ 146 (252)
....|..+|++.+.+.+|+.+++-|++.+ +.+||.|--..+ ......|+.++.|....
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~~------ 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDAA------ 443 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEecccC------
Confidence 35679999999998778888888888864 566666422222 01234577777776542
Q ss_pred HHHHhCCCceeeecCChHHHHHcCC
Q 025474 147 FSEQTKFKGEVYADPNHSSYEALSF 171 (252)
Q Consensus 147 f~e~~~~~fpll~Dp~~~ly~alGv 171 (252)
....+.|++..+++.||+
T Consensus 444 -------~~~~~~d~~g~~~~~~~~ 461 (502)
T PRK06184 444 -------EGGDLVDDAGHFRDAYGL 461 (502)
T ss_pred -------CCCceeCCCccHHHHhcC
Confidence 223467777666665543
No 188
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=90.06 E-value=0.66 Score=36.79 Aligned_cols=63 Identities=8% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CCCccCCCcEEEEEEcC--CCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCCH--HHHHHHHHHhCCC---ce
Q 025474 90 ISDLWKDRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV--EQARTFSEQTKFK---GE 156 (252)
Q Consensus 90 ls~l~~~~~vvlvF~R~--~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~~--~~~~~f~e~~~~~---fp 156 (252)
+.+..++.+.+||-|-+ .||. + ++...++.+++.+.. +.|--|.+++. ..-++.++++++. ||
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 34455566777777888 5665 3 344555555553322 44555566432 1236688888874 77
No 189
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.70 E-value=1 Score=36.13 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=36.4
Q ss_pred eEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHH-HhCCCEEEEEeC
Q 025474 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM-DASGVALVLIGP 138 (252)
Q Consensus 87 ~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l-~~~Gv~vV~Vs~ 138 (252)
.+.+++- +.++.|+.|--+.||+|......+.++.+++ +.-.+.++.+..
T Consensus 4 ~~~~G~~--~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNP--DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEES-T--TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeecCC--CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3455653 6788899999999999999999999888886 333566666644
No 190
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=89.58 E-value=0.87 Score=35.19 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~ 172 (252)
+.+|...+|+.|++....|. ++|+..-.|.. + +.++++.+.++.| ..-+.......|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~-------~~~i~~~~~di~~~p~s~~eL~~~l~~~g--~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLE-------ARGVAYTFHDYRKDGLDAATLERWLAKVG--WETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCCHHHHHHHHHHhC--hHHHHccCchHHHhCChh
Confidence 35788999999999776654 45655555543 3 4589999999877 466667888999999886
No 191
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=89.33 E-value=3.1 Score=40.82 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=68.7
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
....|..+|+..+. .+|+.+++.|++..+.+||.|-...+ .. ...+. ......+++++.|..+...
T Consensus 426 ~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~~~~----~~---~~~~~-~~~~~~~~~~~~~~~~~~~----- 491 (547)
T PRK08132 426 GPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGDDAA----AA---ALLQA-LAAAALPVRVVAVVPAGAA----- 491 (547)
T ss_pred CCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecCCch----hh---hhhhh-hhccCCceEEEEEecCccc-----
Confidence 45679999999987 46778899999866667776532111 01 11111 1123445667777655311
Q ss_pred HHHhCCCceeeecCChHHHHHcCCccccccccChHHHHHHHHHHhhhhhhcccccccccccCCCccccceEEEEeCCCCe
Q 025474 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKVCLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 148 ~e~~~~~fpll~Dp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~~~~~k~~~~g~~~~g~~~q~GG~fVid~ggg~ 227 (252)
.-+...+.|++..+++.||+. .++.+|+.|| |-
T Consensus 492 ----~~~~~~~~d~~~~~~~~~~~~------------------------------------------~~~~~LvRPD-g~ 524 (547)
T PRK08132 492 ----QAAAGVLEDADGLAAERYDAR------------------------------------------PGTVYLIRPD-QH 524 (547)
T ss_pred ----ccCcccccCcccHHHHHhCCC------------------------------------------CCeEEEECCC-ce
Confidence 012235677777766655532 1268999999 68
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHh
Q 025474 228 ISYIHRDKEAGDDPDIQDILKAC 250 (252)
Q Consensus 228 I~~~h~~~~~~D~p~~~eIL~al 250 (252)
|.|.+.. ..++.+++.|
T Consensus 525 va~~~~~------~~~~~~~~~l 541 (547)
T PRK08132 525 VAARWRT------PDAAAVRAAL 541 (547)
T ss_pred EEEEecC------CCHHHHHHHH
Confidence 9887644 2555665554
No 192
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=89.06 E-value=1.5 Score=31.17 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=33.2
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHHHHHHHHhCC-Cce-eeec
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~f~e~~~~-~fp-ll~D 160 (252)
|..|...|||+|.+-..-|.+ .|+..--+..+. ++..+++.+..+. .+| |+.|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 356778999999988777754 455544444443 3455667666553 467 4554
No 193
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=88.22 E-value=1.5 Score=31.99 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCC
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~ 162 (252)
|++|-..+|+.|..--..|.+... +.++.+..|.+++.+. +.++++...|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHhcCCCCEEEEcC
Confidence 578899999999988888876433 4458888898885433 7778898888665444
No 194
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.92 E-value=0.72 Score=36.40 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEE
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~V 136 (252)
+.++.|+.|.-++||+|+..-+.+.+...+.. .++++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 45778888889999999999988877655432 2455543
No 195
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=87.38 E-value=9.8 Score=33.87 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=26.0
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEE
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~V 136 (252)
+.+.+|+.|--+-||+|++...++.+..+ .-+++|..+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~---~g~V~v~~i 153 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD---SGKVQLRHI 153 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh---cCceEEEEE
Confidence 45666666779999999999988876433 222655444
No 196
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.20 E-value=1.2 Score=35.75 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.4
Q ss_pred CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH
Q 025474 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~ 141 (252)
+|||.|....+-+.+.... ...++.+|-|..|+.
T Consensus 43 SWCPdCV~AEPvi~~alk~-ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKH-APEDVHFVHVYVGNR 76 (128)
T ss_pred cCCchHHHhhHHHHHHHHh-CCCceEEEEEEecCC
Confidence 4999999999999886653 245678888888864
No 197
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=0.99 Score=44.27 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
.++-||+-|.+.||+.|.+-.+.++++.+.++.. -.||.-=+|
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~-~~vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD-ENVVIAKMD 425 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC-CCcEEEEec
Confidence 3566777777999999999999999999999874 234433343
No 198
>PHA03050 glutaredoxin; Provisional
Probab=85.12 E-value=3.5 Score=31.98 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=29.8
Q ss_pred EEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--CCHHHHHHHHHHhCC-Cce-eeec
Q 025474 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--GSVEQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~~~~~~~~f~e~~~~-~fp-ll~D 160 (252)
.|-..|||+|.+-..-|.+..- +...++++=|.. +..+..+++.+..+. +.| |+.|
T Consensus 17 vys~~~CPyC~~ak~~L~~~~i--~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 17 IFVKFTCPFCRNALDILNKFSF--KRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred EEECCCChHHHHHHHHHHHcCC--CcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 4568999999887666655321 011234444443 123334455555554 467 4444
No 199
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=1.2 Score=40.04 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=37.9
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+.+.|+|-|-+.||.+|.+-++-++.+..++ .|.-.+=|. .++.+.-+..+|..
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY--p~aVFlkVd---Vd~c~~taa~~gV~ 73 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY--PGAVFLKVD---VDECRGTAATNGVN 73 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC--cccEEEEEe---HHHhhchhhhcCcc
Confidence 5689999999999999999999999988776 333333333 33444444455543
No 200
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=84.88 E-value=3.7 Score=32.27 Aligned_cols=90 Identities=6% Similarity=0.028 Sum_probs=47.9
Q ss_pred CCCcEEEEEEcCC----CCHhHHHHHH--HHHHcHHHHHhCCCEEEEEeCCCHHH--HHHHHHHhCCCceeeecCChHHH
Q 025474 95 KDRKAVVAFARHF----GCVLCRKRAD--YLAAKKDVMDASGVALVLIGPGSVEQ--ARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 95 ~~~~vvlvF~R~~----~Cp~C~~el~--~L~~~~~~l~~~Gv~vV~Vs~~~~~~--~~~f~e~~~~~fpll~Dp~~~ly 166 (252)
++.|.|+|++... ||.+|+.-+. ++.+. + +.+.-+++....+.+. +....+-..+|+-++.++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~-- 88 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN-- 88 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC--
Confidence 3567888888888 8999976553 22222 2 3456666666666543 222233335666677755433
Q ss_pred HHcCCccccccccChHHHHHHHHHH
Q 025474 167 EALSFVSGVLVTFTPKVCLKIIQSY 191 (252)
Q Consensus 167 ~alGv~~~~~~~~~P~~~~~~~~~~ 191 (252)
.+.+.....+...|..+...++.+
T Consensus 89 -~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 89 -RMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred -ceEEEEEEeCCCCHHHHHHHHHHH
Confidence 222222223334566665554443
No 201
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.65 E-value=0.49 Score=46.91 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=45.1
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC--CCEEEEEeCCCHHHHHHHHHHhCCC-ceee
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVEQARTFSEQTKFK-GEVY 158 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~vV~Vs~~~~~~~~~f~e~~~~~-fpll 158 (252)
++.-+|-|-.+||+.|+..++.+.+....++.= =+.|-+|.+... .-.+.+.+++++ ||.+
T Consensus 57 ~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~-~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 57 RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE-ENVKLCREFSVSGYPTL 120 (606)
T ss_pred chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch-hhhhhHhhcCCCCCcee
Confidence 346667777999999999999999988777643 266788888765 445567777776 5643
No 202
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=82.36 E-value=5.4 Score=34.62 Aligned_cols=55 Identities=25% Similarity=0.488 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe-CCCHHHHHHHHHHhCCCce
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGE 156 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs-~~~~~~~~~f~e~~~~~fp 156 (252)
.+..+.+|.. .-|+.|...+..+.. ....+.|..|+ .++.+.++.|+.+++++-.
T Consensus 108 ~~~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~ 163 (200)
T TIGR03759 108 GGGRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPA 163 (200)
T ss_pred CCCeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHH
Confidence 4456888888 899999999999855 35567888888 4566899999999999854
No 203
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.11 E-value=2.2 Score=40.15 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=40.1
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHh-CCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
...++.|-..||++|+..++++.+....++. .++.+..+..+....+....+-.++|
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 3444455799999999999999999988874 67888888877333444433333444
No 204
>PRK10026 arsenate reductase; Provisional
Probab=82.06 E-value=4.4 Score=33.22 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=51.2
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe--CC--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs--~~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|....|.-|++.+.-|.+ +|+.+..+. .+ +.++++.|.+..+.+..-+.......|+.+++..
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCc
Confidence 568889999999998877655 455555554 34 3479999999999877766678889999999864
No 205
>PTZ00062 glutaredoxin; Provisional
Probab=82.01 E-value=1.9 Score=37.53 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=36.2
Q ss_pred CccCCCcEEEEEEcC----CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHH-HHHHHHhCC-Cce-eeec
Q 025474 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 92 ~l~~~~~vvlvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~-~~f~e~~~~-~fp-ll~D 160 (252)
++.... -|++|..+ ++||+|++-..-|.+ .|+....+..+..+.+ +...+..++ ++| |+.+
T Consensus 108 ~li~~~-~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 108 RLIRNH-KILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred HHHhcC-CEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 344344 46667776 599999987666654 4555555555433344 344455555 467 7766
No 206
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=81.10 E-value=13 Score=36.43 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=52.7
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHH
Q 025474 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~ 148 (252)
..+|+.+|+..+.+.+|....+.++...+.+||.| ++.. ...+. ......++..|+.+|.+.++....
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~----~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----- 478 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW----GCDP-LAGLS--DEQRARWRALGARFVQVVPAVQAH----- 478 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEe----cCCc-hhcCC--HHHHHHHHHcCCeEEEEecccccc-----
Confidence 46799999999987776666677777666777765 2211 01111 111233667899999888764211
Q ss_pred HHhCCCceeeecCChHHHHHcC
Q 025474 149 EQTKFKGEVYADPNHSSYEALS 170 (252)
Q Consensus 149 e~~~~~fpll~Dp~~~ly~alG 170 (252)
.-..+.+.|++..+.+.|+
T Consensus 479 ---~~~~~~~~d~~g~~~~~~~ 497 (538)
T PRK06183 479 ---TAQDDHDSDVDGALRAWLA 497 (538)
T ss_pred ---cCCCceeecCCchHHHHHH
Confidence 0233467787777665444
No 207
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=80.11 E-value=4.5 Score=31.41 Aligned_cols=66 Identities=11% Similarity=0.232 Sum_probs=51.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++.+..| +++|+.+..+.. + +.++++.+.+..+.+..-+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 1 ITIYHNPRCSKSRNALALL-------EEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLAD 70 (112)
T ss_pred CEEEECCCCHHHHHHHHHH-------HHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCc
Confidence 3577889999999976655 455666666643 3 4589999999999888877789999999999874
No 208
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=78.72 E-value=3.5 Score=32.05 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC---HHHHHHHHHH
Q 025474 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS---VEQARTFSEQ 150 (252)
Q Consensus 99 vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~---~~~~~~f~e~ 150 (252)
.||+|-+ +|||+|.. +++| |...|+...+|-.|. ..+++++..+
T Consensus 15 ~VVifSK-s~C~~c~~-~k~l------l~~~~v~~~vvELD~~~~g~eiq~~l~~ 61 (104)
T KOG1752|consen 15 PVVIFSK-SSCPYCHR-AKEL------LSDLGVNPKVVELDEDEDGSEIQKALKK 61 (104)
T ss_pred CEEEEEC-CcCchHHH-HHHH------HHhCCCCCEEEEccCCCCcHHHHHHHHH
Confidence 4566665 99999998 6655 333565544444432 2466655544
No 209
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=78.61 E-value=1.7 Score=43.29 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=47.3
Q ss_pred CCCccCCCc--EEEEEEcCCCCHhHHHHHHH-HHHcHHHHHhCCCEEEEEeCC-CHHHHHHHHHHhC---CCceeeecCC
Q 025474 90 ISDLWKDRK--AVVAFARHFGCVLCRKRADY-LAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKGEVYADPN 162 (252)
Q Consensus 90 ls~l~~~~~--vvlvF~R~~~Cp~C~~el~~-L~~~~~~l~~~Gv~vV~Vs~~-~~~~~~~f~e~~~---~~fpll~Dp~ 162 (252)
+++.+.+.+ .|++.|-+.||.-|++--+. +++...+++..|+.++=+... +..++.++.++++ .|.-++.|++
T Consensus 465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 334444444 78888889999999986554 444555666677776655543 2246666666665 4455777765
Q ss_pred hH
Q 025474 163 HS 164 (252)
Q Consensus 163 ~~ 164 (252)
.+
T Consensus 545 g~ 546 (569)
T COG4232 545 GS 546 (569)
T ss_pred CC
Confidence 44
No 210
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=78.58 E-value=4.5 Score=34.30 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~f 155 (252)
.+++.+-..+++++|+.++++|-.+...++.|.+.++++|
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 3577777888999999999999999999999999988887
No 211
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=77.93 E-value=6.3 Score=30.73 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=49.2
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCc-eeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKG-EVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~f-pll~Dp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++....|. ++|+.+..+.. + +.++++.+.+..+++. .=+.......|+.+|+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLE-------DKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSD 71 (114)
T ss_pred CEEEECCCCHHHHHHHHHHH-------HCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCc
Confidence 35788899999999777664 45666655542 3 4479999999987653 336788999999999864
No 212
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=76.85 E-value=4.2 Score=34.37 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEE
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~V 136 (252)
+++..|+.|--..||+|++..+.+.+ ...+++|..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~ 111 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIF 111 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEE
Confidence 35666666778999999999998877 2345554444
No 213
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=75.05 E-value=6.2 Score=34.73 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=27.8
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEE
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~V 136 (252)
+++..|+.|--.-||+|++.-+++.++ .+.|++|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 456667777899999999988887654 3467887665
No 214
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.42 E-value=6.5 Score=27.26 Aligned_cols=53 Identities=9% Similarity=-0.063 Sum_probs=33.3
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeecC
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp 161 (252)
.+|...+||+|++-...|.+. +...+.+-|...+. ..+|.+.++. ..|++.|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~--~~~~~~~np~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKNK--PAEMLAASPKGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCC--CHHHHHHCCCCCCCEEEEC
Confidence 356778999999877666543 22345666655432 2456666554 47888775
No 215
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.04 E-value=4.8 Score=32.75 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEE
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV 134 (252)
+.++.|+.|--+.||+|...-+.+.+...++ ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 4577777888999999999999998877765 3345544
No 216
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=73.17 E-value=9.9 Score=34.53 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=55.2
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e 149 (252)
+..+..|-|++.|.+|+.+-.+.- .++++.-+|+-.- -.-...+.+|++..+++ +.+++|+.|+-|..-++ .
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~s~q--edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl---~- 148 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDN-DGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKL---K- 148 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECC-CCCceEEEEECCH--HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHH---h-
Confidence 466789999999999999877643 2345544443211 12344455566556665 46799999998876544 2
Q ss_pred HhCCCceeeecCC
Q 025474 150 QTKFKGEVYADPN 162 (252)
Q Consensus 150 ~~~~~fpll~Dp~ 162 (252)
..++.|.++.|+.
T Consensus 149 ~e~l~F~fiP~~~ 161 (270)
T TIGR00995 149 VEGIGFRFLPDPA 161 (270)
T ss_pred hcCccEEEeCCHH
Confidence 3357888887753
No 217
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=70.94 E-value=23 Score=24.93 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=33.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCC--EEEEEeCCCHHHHHHHHHHhCC-CceeeecC
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv--~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp 161 (252)
+..|-..+||+|++-...|.+ +|+ +++-|..+. ....+|.+.++. ..|++.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~-------~gi~y~~~~v~~~~-~~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTE-------LELDVILYPCPKGS-PKRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHH-------cCCcEEEEECCCCh-HHHHHHHHhCCCCcccEEEeC
Confidence 346777899999987666644 444 445444332 234567666554 47888875
No 218
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=70.82 E-value=10 Score=35.34 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~ 129 (252)
.-+|++.|-+.||+|.+.-.+-+.+..+.+++.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 457888888999999999999999988877754
No 219
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=69.55 E-value=14 Score=26.35 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
+.+||.|..-...+++...++ |+.+-.+...+.+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~ 40 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFE 40 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHH
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHH
Confidence 778999997766666665544 5666555554433
No 220
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=69.18 E-value=13 Score=31.17 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=35.7
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHc--HHHHHhCCCEEEEEeCCCHHHHHHHH--------HHhCCCceeeecCChHHH
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFS--------EQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~--~~~l~~~Gv~vV~Vs~~~~~~~~~f~--------e~~~~~fpll~Dp~~~ly 166 (252)
.+.|++.+-..||..|..-..+--+. ..++-+...--|-|..+....+...- ..-|+|..++.+|+.+..
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 56777788899999999877643222 22222333444455555544444322 345899999999988754
No 221
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.20 E-value=6.8 Score=25.68 Aligned_cols=56 Identities=21% Similarity=0.096 Sum_probs=32.1
Q ss_pred EEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeecCChH
Q 025474 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNHS 164 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp~~~ 164 (252)
+|-..+||+|++-...|... +...+++-+..+..... ++.+..+. ..|++.+.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALNPLGKVPVLEDGGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEECCEE
Confidence 45567899999766665543 22345666665443222 45554443 36877776443
No 222
>PRK10853 putative reductase; Provisional
Probab=68.01 E-value=14 Score=29.17 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=48.7
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC----CCHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~----~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|....|.-|++.+.-|. ++|+.+..+.. =+.++++.|.++.|+. -+.......|+.++...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~--~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE-------AQGIDYRFHDYRVDGLDSELLQGFIDELGWE--ALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH-------HcCCCcEEeehccCCcCHHHHHHHHHHcCHH--HHHhcCCchHHhCCHhH
Confidence 56888999999999776664 45777666653 2457999999887754 47788999999998753
No 223
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=67.68 E-value=9.8 Score=30.07 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=51.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEE--eC--CCHHHHHHHHHHhCCCceeeecCChHHHHHcCCc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GP--GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~V--s~--~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~ 172 (252)
+.+|...-|.-|++-...| +++|+..-.| .. =+.+++.+|.+..+.++.-+.......|++||..
T Consensus 3 itiy~~p~C~t~rka~~~L-------~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWL-------EEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLD 71 (117)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCc
Confidence 6688889999999876554 5667665333 32 3458999999999999998889999999999954
No 224
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=67.29 E-value=29 Score=26.50 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=44.1
Q ss_pred cCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC----CHHHHHHHHHHhCCCceeeecCChHHHHHcC
Q 025474 105 RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALS 170 (252)
Q Consensus 105 R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~----~~~~~~~f~e~~~~~fpll~Dp~~~ly~alG 170 (252)
-..-|.-|++.+..| +++|+.+..|..- +.+++.++.+..+.++.-+.++....|+.++
T Consensus 2 ~~~~C~t~rka~~~L-------~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 2 GNPNCSTCRKALKWL-------EENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp E-TT-HHHHHHHHHH-------HHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred cCCCCHHHHHHHHHH-------HHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 346799998876655 5678888888764 3478999999999999888899999999999
No 225
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=66.27 E-value=8 Score=27.32 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=25.7
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs 137 (252)
|.+|....||+|...-+.|.+... ....++++.-+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~-~~~~~~~~~~~~ 36 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY-ADDGGVRVVYRP 36 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh-hcCCcEEEEEec
Confidence 356778999999999999988762 334456655443
No 226
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=62.57 E-value=23 Score=29.19 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=38.8
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCcee
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEV 157 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpl 157 (252)
..=+++|..+-|.-|.++++.| +++|.+|=.+..++-+.+++ ++++|.++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK~---~~gIp~e~ 74 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALKR---RLGIPYEM 74 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHHH---hcCCChhh
Confidence 4456788999999999998776 57899999999998765554 57777643
No 227
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=62.05 E-value=10 Score=34.07 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=31.6
Q ss_pred CccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhC
Q 025474 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (252)
Q Consensus 92 ~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~ 129 (252)
|+..++++-|+|.-.-|||+|-.+--.|-....+|-..
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 45568899999999999999999999988777766544
No 228
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=61.66 E-value=23 Score=27.59 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=45.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe--CC--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs--~~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++....| +++|+..-.+. .+ +.++++.+.++.+ ..-+.......|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L-------~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g--~~~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALL-------EAAGHEVEVRDLLTEPWTAETLRPFFGDLP--VAEWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHH-------HHcCCCcEEeehhcCCCCHHHHHHHHHHcC--HHHHHhcccHHHHhcCCCc
Confidence 4577889999999876555 44565544444 33 4479999999765 3555567789999887764
No 229
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=61.59 E-value=10 Score=28.63 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=35.8
Q ss_pred CCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ceeeecCChHHHH
Q 025474 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fpll~Dp~~~ly~ 167 (252)
-.||+|++-.-.|.+. ....+++-|..++.. +.|.+.+.+. .|++.|.+..+++
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p--~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKP--EDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCC--HHHHHhCCCCCCCEEEECCEEecC
Confidence 5799999988887654 233456666655532 4577666654 7899987665554
No 230
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=60.35 E-value=31 Score=26.61 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCC--------HHHHHHHHHHhCCCce
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGS--------VEQARTFSEQTKFKGE 156 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~--------~~~~~~f~e~~~~~fp 156 (252)
+...+...++++.|++++.++-.. .+.++.+.+.+++.+.
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~ 75 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPID 75 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEE
Confidence 456667788889999999999988 6778888888888754
No 231
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.07 E-value=11 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=29.5
Q ss_pred EEcCCCCHhHHHHHHHHHHcHHHHHhCCC--EEEEEeCCCHHHHHHHHHHhCC-CceeeecCC
Q 025474 103 FARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv--~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp~ 162 (252)
.|-..+||+|++-...|.+ +|+ +++-|..+. ...+|.+.+.. ..|++.|.+
T Consensus 3 ly~~~~~~~~~~v~~~l~~-------~gi~~~~~~v~~~~--~~~~~~~~~p~~~vP~l~~~~ 56 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAE-------KGVSVEIIDVDPDN--PPEDLAELNPYGTVPTLVDRD 56 (73)
T ss_pred EEECCCChhHHHHHHHHHH-------cCCccEEEEcCCCC--CCHHHHhhCCCCCCCEEEECC
Confidence 4567899999998776643 344 344444332 22455555444 367777654
No 232
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.59 E-value=24 Score=30.50 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.4
Q ss_pred EecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHH
Q 025474 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM 126 (252)
Q Consensus 80 l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l 126 (252)
-...+|+.+.+++. ..++.++.|.-.-||+|.+.++.+.+.+-..
T Consensus 69 ~~~~~~~~~~~G~~--~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 69 YLTPDGKDVVLGNP--YAPVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred eecCCCCcccccCC--CCCceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 34456777777776 3488888899999999999999998854443
No 233
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=53.39 E-value=47 Score=27.16 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=37.0
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH--------------------HHHHHHHHHhCCCce
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--------------------EQARTFSEQTKFKGE 156 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~--------------------~~~~~f~e~~~~~fp 156 (252)
|.||.-+-||+|-.-.+.|.++..++.+..++...+..... ..++.+.+.+++++.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~ 77 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN 77 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence 56788999999999999999988877333344444543433 234566677777654
No 234
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=52.57 E-value=51 Score=24.36 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHhCCCEEEEEeCCCH----HHHHHHHHHhCCCceeeecCChHHHHHcCCccc
Q 025474 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 123 ~~~l~~~Gv~vV~Vs~~~~----~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~ 174 (252)
...++...+++|.|..|-. ..+..+++.+++|+ ++.....++-++.|+..+
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~v~ 71 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGIDVG 71 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCccC
Confidence 3445566788999988755 35556688889999 688888999999998765
No 235
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=52.56 E-value=83 Score=24.57 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHHHcCCcccc
Q 025474 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~ 175 (252)
.-...|+++.+++++.++.=++|..++.+.+++..+-. -..++.-.+.-++.+.+|+..+.
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la-pgl~l~P~sgddLa~rL~l~hYP 95 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA-PGLPLLPVSGDDLAERLGLRHYP 95 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCcccCCCHHHHHHHhCCCccc
Confidence 34456778889999999999999999998888887653 34667778888999999987654
No 236
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=52.45 E-value=17 Score=24.97 Aligned_cols=58 Identities=14% Similarity=-0.026 Sum_probs=34.0
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH-HHHHHHHHhCC-CceeeecCChH
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYADPNHS 164 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~-~~~~f~e~~~~-~fpll~Dp~~~ 164 (252)
.+|...+||.|++-.-.|.+. ....+++-|.....+ ...+|.+.+.. ..|++.|.+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 356678999998655555442 223456666543322 23566666555 47888876543
No 237
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=50.81 E-value=85 Score=25.82 Aligned_cols=61 Identities=5% Similarity=0.025 Sum_probs=49.5
Q ss_pred HHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHHHcCCcccc
Q 025474 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~ 175 (252)
.-...|+++.++|++.|+.=++|..++.+.+++..+-- -..+++-...-++.+.||+..+.
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la-pgl~l~P~sgddLA~rL~l~HYP 133 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA-PGLPLLPVSGDDLARRLGLSHYP 133 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCeecCCCHHHHHHHhCCCccc
Confidence 34456778889999999999999999999998887653 34677878888999999998654
No 238
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=49.06 E-value=43 Score=22.56 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=32.9
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCC-CceeeecC
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~-~fpll~Dp 161 (252)
..|...+||+|++-...|.+. +...+++-|..... ....+|.+.+.. ..|++.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~ 58 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD 58 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-----CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC
Confidence 356778999999877776554 22345566654322 123456666554 47888643
No 239
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=49.05 E-value=38 Score=23.16 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=25.8
Q ss_pred EcCCCCHhHHHHHHHHHHcHHHHHhCCC--EEEEEeCCCHHHHHHHHHHhCC-CceeeecC
Q 025474 104 ARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~Gv--~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp 161 (252)
|-..+||+|++-.-.|. .+|+ +.+.+..+... .+.+..+. ..|++.|.
T Consensus 4 y~~~~~p~~~rvr~~L~-------~~gl~~~~~~~~~~~~~---~~~~~~~~~~vP~L~~~ 54 (71)
T cd03037 4 YIYEHCPFCVKARMIAG-------LKNIPVEQIILQNDDEA---TPIRMIGAKQVPILEKD 54 (71)
T ss_pred EecCCCcHhHHHHHHHH-------HcCCCeEEEECCCCchH---HHHHhcCCCccCEEEeC
Confidence 44678999997655554 3454 34444443221 22233332 36778765
No 240
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=48.90 E-value=49 Score=26.90 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred CcEEEEEEcCCC-------CHhHHHH-HHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCCh
Q 025474 97 RKAVVAFARHFG-------CVLCRKR-ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 97 ~~vvlvF~R~~~-------Cp~C~~e-l~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~ 163 (252)
.+++.+|+.-.. .+.-... ...|.++..+|++.|+.++.+..+..+.+.++++++++. .|+.+.+-
T Consensus 25 ~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~V~~~~~~ 98 (165)
T PF00875_consen 25 DPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT-AVYFNEEY 98 (165)
T ss_dssp SEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES-EEEEE---
T ss_pred CCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC-eeEecccc
Confidence 466666654332 3333333 346888899999999999999988888999999998743 36666543
No 241
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=48.47 E-value=35 Score=25.20 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
.+.+.+...++++.|+.++.++......++.+.++.++
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 35566677788889999999999999999999998887
No 242
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=47.49 E-value=55 Score=31.34 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=25.4
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHH
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~ 148 (252)
|+-|-.+|||+|.+--.-| ++.|+..-.|..+......++.
T Consensus 4 V~vys~~~Cp~C~~aK~~L-------~~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWF-------GANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHCCCCeEEEECCCChhHHHHH
Confidence 4456789999999765555 4457775566655443333433
No 243
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=46.59 E-value=22 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=31.2
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeecC
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp 161 (252)
+.+|-...||+|++-...|.+. ....+++-|..... -++|.+.+.. ..|++.+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~--~~~~~~~np~~~vPvL~~~ 73 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDK--PDWFLEKNPQGKVPALEID 73 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCC--cHHHHhhCCCCCcCEEEEC
Confidence 4455678899999776665443 22245555554332 2345555544 47888765
No 244
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=45.52 E-value=34 Score=29.74 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=43.7
Q ss_pred HHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCce--eeecCChHHHH
Q 025474 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (252)
Q Consensus 113 ~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fp--ll~Dp~~~ly~ 167 (252)
....+.+.+...++.++|+.+|.++--+...++.+.++++++.| ++++-...+|.
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~ 76 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYY 76 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEe
Confidence 34567888888889999998888888888999999888887777 77766666654
No 245
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=45.12 E-value=59 Score=26.73 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=30.8
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++..+...+++++|+++..++-|+...+....++.++.
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 34555667788889999999988888899999998883
No 246
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=41.42 E-value=34 Score=27.83 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=30.1
Q ss_pred HcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc
Q 025474 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~f 155 (252)
+...++++.|++++.||.+....++.+++..+++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 55556678899999999998899999999989885
No 247
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=40.80 E-value=77 Score=30.98 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=38.9
Q ss_pred cCCCcEEEEEEcCC-CCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH--HHHHHHH
Q 025474 94 WKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFS 148 (252)
Q Consensus 94 ~~~~~vvlvF~R~~-~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~--~~~~~f~ 148 (252)
+++++++|.-=|++ -.|.-|++.. .++.+.++++|-+|++|++|+. +.+.++.
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~FY--~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREFY--QVLLPLLKEQGKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHHH--HHHhHHHHHhCCeEEEEecCchhhhhHHHHH
Confidence 45688888877765 5677776653 4567889999999999999987 3444443
No 248
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.70 E-value=37 Score=30.37 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=35.4
Q ss_pred HHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ceeeecCChHHH
Q 025474 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSY 166 (252)
Q Consensus 123 ~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fpll~Dp~~~ly 166 (252)
+.+++++|+.||.++.-+..+...+.+..+.+ -|+++.....+|
T Consensus 32 ~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~ 76 (274)
T COG3769 32 LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIY 76 (274)
T ss_pred HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEE
Confidence 56788999999999999998999999999988 566665554443
No 249
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=40.67 E-value=44 Score=26.13 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=29.0
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+.+...+++++|+++++++..+.+.+....+++++.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 344556677789999999999988888888888876
No 250
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=40.43 E-value=87 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=29.6
Q ss_pred HHHHcHHHHHhCCCEEEEEeCCCH---H------------HHHHHHHHhCCCce-eee
Q 025474 118 YLAAKKDVMDASGVALVLIGPGSV---E------------QARTFSEQTKFKGE-VYA 159 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Vs~~~~---~------------~~~~f~e~~~~~fp-ll~ 159 (252)
+..+...+++++|..|+.++.-+. . ...+|.+++++||+ |+.
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 333445556688999999986543 2 56889999999986 554
No 251
>PF14968 CCDC84: Coiled coil protein 84
Probab=40.25 E-value=6.2 Score=36.97 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=25.4
Q ss_pred cCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc
Q 025474 105 RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 105 R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~f 155 (252)
+.+||++|..++.+... .|.-.|+-==.-+++-...+++|+-+++...
T Consensus 57 ~~fWC~fC~~ev~~~~s---~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~~ 104 (336)
T PF14968_consen 57 NRFWCVFCDCEVREHDS---SFACGGAIEHLASPEHRKNVKKFWWKNGADM 104 (336)
T ss_pred ceeEeeCccchhhhccc---hhhhccHHhhcCCHHHHHHHHHHHHHcCCCc
Confidence 46899999999987744 1111111000012333356666766666553
No 252
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=39.58 E-value=19 Score=25.25 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=32.1
Q ss_pred EcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeecCCh
Q 025474 104 ARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNH 163 (252)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp~~ 163 (252)
|...+||+|++-.-.|+. +....+++-|..+.. -..|.+..+. ..|++.|.+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~--~~~~~~~~p~~~vPvL~~~g~ 55 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEK--RPEFLKLNPKGKVPVLVDDGE 55 (75)
T ss_dssp EEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTST--SHHHHHHSTTSBSSEEEETTE
T ss_pred CCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccc--hhHHHhhcccccceEEEECCE
Confidence 557899999987665543 223355666665543 4445555443 4788876544
No 253
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=39.04 E-value=79 Score=30.92 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=49.5
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
.+.+..+.+.=.+|+.|++.+|....++||+ +-.--+|.+-+...+....+|.+.||-||-|..+.
T Consensus 273 ee~L~rL~v~l~~~~~v~l~~LRg~~RvvIv---AG~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 273 DETLSRLPVRLSTNRIVELVQLRDITRPVIL---AGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhhccceEeccCCCEEeHHHhcCcceEEEE---ECCHHHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 3444555555446889999999655555554 23337899999999999999999999999998763
No 254
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=38.90 E-value=70 Score=26.04 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=35.1
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
+.++|++-|-+.|-|.|.+.=.-|.+..++++.. +.+.+|..+...
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vp 64 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVP 64 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTH
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccch
Confidence 4689999999999999997777777777766543 677788777544
No 255
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.54 E-value=54 Score=28.36 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~f 155 (252)
+...++...+++.|.+++.||-+...-++.+.+++++.+
T Consensus 80 ~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 80 PGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred ccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 345556677889999999999999889999999999875
No 256
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=38.36 E-value=1.1e+02 Score=23.18 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=38.5
Q ss_pred HHHHHhCCCEEEEEeCCCH----HHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 123 ~~~l~~~Gv~vV~Vs~~~~----~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
...++...+.+|.|+.|-+ +.+..+++++++|+-.|.....++-++.|...
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~ 79 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPF 79 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCC
Confidence 3445666789999998864 35667788888888777678889999999753
No 257
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=37.85 E-value=69 Score=22.77 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=27.8
Q ss_pred ccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 214 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 214 q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
+.+|.|-+--+ |+++|.-... +..|+.++|+++++
T Consensus 38 ~~~G~Fev~~~-g~~v~sk~~~--~~fp~~~~~~~~ir 72 (72)
T TIGR02174 38 PTTGAFEVTVN-GQLVWSKLRG--GGFPEPEELKQLIR 72 (72)
T ss_pred CCCcEEEEEEC-CEEEEEeccC--CCCCCHHHHHHhhC
Confidence 35788988766 5899887764 57999999998864
No 258
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=37.33 E-value=95 Score=25.60 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=32.0
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC--ce
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GE 156 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~--fp 156 (252)
+...+..++++++|+++.+++-++.+.++...+..++. |+
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd 136 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFD 136 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhh
Confidence 44555667788899999999999988888888888873 55
No 259
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=37.11 E-value=51 Score=22.67 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=34.1
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH-HHHHHHHHhCCC-ceeeecCC
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFK-GEVYADPN 162 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~-~~~~f~e~~~~~-fpll~Dp~ 162 (252)
+.+|....||.|++-.-.|.+. +...+++.|.....+ .-..|.+.+.+. .|++.|.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-----GVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-----CCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECC
Confidence 4577788899998877666553 222455555543222 224566665553 78888754
No 260
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.85 E-value=1.5e+02 Score=28.48 Aligned_cols=63 Identities=13% Similarity=-0.084 Sum_probs=43.0
Q ss_pred CcEEEEEEcCC-C---CHhHHHH-HHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeec
Q 025474 97 RKAVVAFARHF-G---CVLCRKR-ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 97 ~~vvlvF~R~~-~---Cp~C~~e-l~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~D 160 (252)
.+++.+|+.-. . .+..... +..|.++..+|++.|..+++...++.+.+.++++++++. .|+.|
T Consensus 53 ~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~-~V~~~ 120 (454)
T TIGR00591 53 LPLHVCFCLVDFFLAATRRHYFFMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAA-AVVTD 120 (454)
T ss_pred CCEEEEEEeCCCcccccHHHHHHHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCC-EEEEe
Confidence 35666665431 1 2333333 347888899999999999998877778889999887665 24444
No 261
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=36.70 E-value=88 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..+..+.++++|.+++.|+.+....++.+.+..++.
T Consensus 92 ~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 92 ARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 344455667899999999988888889999888875
No 262
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=36.53 E-value=75 Score=29.42 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
..|.+-+.|.||..++-.+ .+-+ .-+...+...+++++|+.+..++.++.+.+....+..++
T Consensus 126 ~~~~~i~~D~D~TL~~~~~-----~v~i-------------rdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL 187 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE-----PVRI-------------RDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKL 187 (303)
T ss_pred eeccEEEEecCCCccCCCC-----cccc-------------CChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCC
Confidence 4566667777776554321 1101 124566778889999999999999988889999999998
Q ss_pred C--ceeeecCChHHHHH
Q 025474 154 K--GEVYADPNHSSYEA 168 (252)
Q Consensus 154 ~--fpll~Dp~~~ly~a 168 (252)
. |+++.-.+...++.
T Consensus 188 ~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 188 EGYFDIIICGGRKAGEY 204 (303)
T ss_pred CccccEEEECCCccccc
Confidence 7 66565555555554
No 263
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=36.12 E-value=59 Score=30.46 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCC
Q 025474 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~ 162 (252)
||.+.+.++..+.+.. .++++++|.--+.+.++++.++++++ .|.|.+
T Consensus 10 G~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~--~y~~~e 57 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP--LYCEVE 57 (343)
T ss_pred eHHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC--ccCCHH
Confidence 4455666666665431 16899999999999999999998876 455533
No 264
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=35.93 E-value=1.8e+02 Score=23.76 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..++||+-|-+.|.|.|...=.-|.+..+.+.+- +.|..|-.+ ++..|.+-+++.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid---eV~~~~~~~~l~ 76 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID---EVPDFVKMYELY 76 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc---hhhhhhhhhccc
Confidence 3589999999999999998877788877776543 556666666 455555555544
No 265
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=35.81 E-value=1.1e+02 Score=24.23 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=45.9
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--C--CHHHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~--~~~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
+.+|....|.-|++....|. ++|+.+-.+.. + +.++++.|.+.. +..-+.......|+.++...
T Consensus 3 i~iY~~p~Cst~RKA~~~L~-------~~gi~~~~~d~~~~p~t~~eL~~~l~~~--g~~~lin~~~~~~r~l~~~~ 70 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK-------ASGHDVEVQDILKEPWHADTLRPYFGNK--PVGSWFNRAAPRVKSGEVNP 70 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCcEEEeccCCCcCHHHHHHHHHHc--CHHHHHhccchHhhhCCCCc
Confidence 45788899999999776654 55766666653 3 347999999885 44556667788899888543
No 266
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=35.63 E-value=1e+02 Score=28.46 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC--ceee
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GEVY 158 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~--fpll 158 (252)
+...+...+++++|+.+..++.++.+.+....++.|+. |+.+
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvI 192 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDII 192 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEE
Confidence 56677788899999999999999988899999999988 5533
No 267
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=35.48 E-value=71 Score=25.60 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=30.1
Q ss_pred HHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
.+.+..+.+++.|..++.||.+....++.+.+.+++.
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 4555566778899999999999888888888888775
No 268
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=34.90 E-value=58 Score=27.68 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=31.9
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe-CCCH-HHHHHHH
Q 025474 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSV-EQARTFS 148 (252)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs-~~~~-~~~~~f~ 148 (252)
--+++|...-.+.+.+. ++++-...+ |++|-|++.-. ++..+ .+++.++|+.+|+|+ ..+. ..+..++
T Consensus 59 g~E~l~~~k~l~~~~~~--~~~lt~~DR-Vllfs~~~~~~----e~~~~---a~~L~~~gi~~v~Vs~~~~~~~~l~~~~ 128 (172)
T PF10740_consen 59 GAEPLPSAKRLSEDLEN--FDELTETDR-VLLFSPFSTDE----EAVAL---AKQLIEQGIPFVGVSPNKPDEEDLEDLA 128 (172)
T ss_dssp STT--TTEEE--TT----------TT-E-EEEEES-S--H----HHHHH---HHHHHHHT--EEEEE-SS---TTGGG-S
T ss_pred CCCCCchhhcCcccccc--cccccccce-EEEEeCCCCCH----HHHHH---HHHHHHCCCCEEEEEecCCCCCchhhhh
Confidence 34677777665544321 223322223 66665554432 44333 446678899999999 3222 1222222
Q ss_pred H---HhCCCceeeecCChHHHHHcCCc
Q 025474 149 E---QTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 149 e---~~~~~fpll~Dp~~~ly~alGv~ 172 (252)
. .++++-|++-|++. ..+|..
T Consensus 129 ~~~Idl~~~~~LvP~EdG---~Rig~P 152 (172)
T PF10740_consen 129 DVHIDLKLPKPLVPTEDG---DRIGFP 152 (172)
T ss_dssp SS-EE----S-SEE-TTS----EE---
T ss_pred hheeecccCCCcccCCCC---CEecch
Confidence 1 22456678877773 345543
No 269
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.36 E-value=53 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.6
Q ss_pred EEEcCCCCHhHHHHHHHHHH
Q 025474 102 AFARHFGCVLCRKRADYLAA 121 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~ 121 (252)
.+|-...||+|++-...|.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 45567889999988766543
No 270
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=33.78 E-value=50 Score=23.12 Aligned_cols=57 Identities=11% Similarity=-0.054 Sum_probs=34.1
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH-HHHHHHHHhCC-CceeeecCCh
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYADPNH 163 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~-~~~~f~e~~~~-~fpll~Dp~~ 163 (252)
.+|....|+.|++-.-.|.+. +...+++.|.....+ ...+|.+-+.. ..|++.|.+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCE
Confidence 467788999997766544332 223456666553322 23457666654 4788888554
No 271
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.64 E-value=1.6e+02 Score=20.62 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHcHHHHHhCCCEEEEE-eCCCHHHHHHHHHHhCCCceeeecCCh
Q 025474 117 DYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~V-s~~~~~~~~~f~e~~~~~fpll~Dp~~ 163 (252)
....+....|++.|+.+..- ...+....-+++++.|+++-++.+.+.
T Consensus 15 ~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 15 DYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcch
Confidence 34445567788889988763 444556666778888999988877544
No 272
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=33.25 E-value=1.8e+02 Score=21.27 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=37.4
Q ss_pred cHHHHHhCCCEEEEEeCCCHH----HHHHHHHHhCCCceeeecCChHHHHHcCCcccc
Q 025474 122 KKDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 122 ~~~~l~~~Gv~vV~Vs~~~~~----~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~ 175 (252)
....++...+++|.|..|-.+ .+..+++++++|+- +.+...++-++.|.....
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~-~~~s~~eLG~a~G~~~~~ 75 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVS-KVDSMKKLGKACGIEVGA 75 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHHCCCcCE
Confidence 344566667889999887553 45667888888884 444678888888877653
No 273
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=33.22 E-value=49 Score=30.03 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=41.9
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccC-CCcEEEEEEcCCCCHhHHHHHHHHHHc----HHHHHhCCCEEEEEeCCCHHHH
Q 025474 70 DTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAAK----KDVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~-~~~vvlvF~R~~~Cp~C~~el~~L~~~----~~~l~~~Gv~vV~Vs~~~~~~~ 144 (252)
+..+.+|-|++.|.+|+.+-...=-. ++.+.++|+ |++++..+-+. .+++ +.+++|+.|+-+..-++
T Consensus 70 ~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 70 EKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HHHTTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred HHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 35778999999999999986655311 234455543 66666655332 2333 67899999999866433
Q ss_pred -HHHH-HHhCCCceeeecC
Q 025474 145 -RTFS-EQTKFKGEVYADP 161 (252)
Q Consensus 145 -~~f~-e~~~~~fpll~Dp 161 (252)
++.. +..++.|.++.|+
T Consensus 142 ~~~~~~k~~~~~F~~vP~~ 160 (274)
T PF04278_consen 142 AQENKKKPEGLQFRFVPDP 160 (274)
T ss_dssp HHHTTT-TT-EEEEEE--H
T ss_pred HHHhhcCCcCceEEEcCCH
Confidence 2221 2334556666654
No 274
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=33.02 E-value=2e+02 Score=23.97 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=29.1
Q ss_pred HcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCCceeeecC
Q 025474 121 AKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~fpll~Dp 161 (252)
+..+++++.|++|..|+.++. +.+++.++..|=.|-...|+
T Consensus 127 ~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~ 168 (183)
T cd01453 127 ETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVILDE 168 (183)
T ss_pred HHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCH
Confidence 345667888999988888754 55778888877665555554
No 275
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=32.99 E-value=1.8e+02 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred HHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecC
Q 025474 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp 161 (252)
-.+..|.++..+|++.|+.+++..-+..+.+.++++++++.- |+.+.
T Consensus 52 Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~-V~~~~ 98 (471)
T TIGR03556 52 YLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKA-VYWNL 98 (471)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCE-EEEec
Confidence 355678889999999999999887777788889998876552 44443
No 276
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=32.54 E-value=2.2e+02 Score=25.15 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=46.4
Q ss_pred EEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe-CCCHHHHHHHHHHhCCCceeeec---CChHHHHHcCCccc
Q 025474 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGEVYAD---PNHSSYEALSFVSG 174 (252)
Q Consensus 100 vlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs-~~~~~~~~~f~e~~~~~fpll~D---p~~~ly~alGv~~~ 174 (252)
++++-|-.-...=...+.+--++...|.+.|+..|.|- ..+.+++++|.+..+.|.-+... ++.+-.+.+|+..-
T Consensus 138 ~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~~v 216 (238)
T PF13714_consen 138 FVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVKRV 216 (238)
T ss_dssp SEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTESEE
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCcEE
Confidence 55555543211113344444555667889999988875 46678899999998777555543 33455677887654
No 277
>PLN02954 phosphoserine phosphatase
Probab=32.42 E-value=94 Score=26.15 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~f 155 (252)
+.+.+....+++.|.++..|+.+....++...+.++++.
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~ 125 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPP 125 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCCh
Confidence 345556677788999999999998888999999988873
No 278
>PTZ00258 GTP-binding protein; Provisional
Probab=32.25 E-value=3.1e+02 Score=26.26 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=46.2
Q ss_pred CCcEEEEEEcC--CCCHhHHHHHHHHHHcHHHHHhC-CCEEEEEeCC---------CHHHHHHHHHHhCCCceeeecCCh
Q 025474 96 DRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPG---------SVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 96 ~~~vvlvF~R~--~~Cp~C~~el~~L~~~~~~l~~~-Gv~vV~Vs~~---------~~~~~~~f~e~~~~~fpll~Dp~~ 163 (252)
.+|+|++.--. ..++.-++.+..+.+ ..++. +..+|.|+.. +.++..+|.+.+|+.=+-+-.--+
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~---~~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~ 296 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKE---WVGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIK 296 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHH---HHHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHH
Confidence 47877776544 221122333333333 33344 5788888841 346777899999985445555557
Q ss_pred HHHHHcCCccc
Q 025474 164 SSYEALSFVSG 174 (252)
Q Consensus 164 ~ly~alGv~~~ 174 (252)
..|+.||+...
T Consensus 297 ~~~~lL~li~f 307 (390)
T PTZ00258 297 TGYKLLNLIHF 307 (390)
T ss_pred HHHHHhCCEEE
Confidence 88999998643
No 279
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=32.14 E-value=1.9e+02 Score=23.68 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 114 KRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
++...|+++...+++.|+.+|.+++-.
T Consensus 91 ~~~~nl~~ii~~~~~~~~~~il~tp~~ 117 (198)
T cd01821 91 TYKEYLRRYIAEARAKGATPILVTPVT 117 (198)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 455667777888889999999988643
No 280
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=31.61 E-value=1.5e+02 Score=23.01 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=37.8
Q ss_pred HHHHhCCCEEEEEeCCCH----HHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 124 DVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 124 ~~l~~~Gv~vV~Vs~~~~----~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
..++...+.+|.|..|-+ +.++.+++.+++|+-.|.+...++-++.|...
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHF 88 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCcc
Confidence 345556688999988765 35666788888887777788899999999754
No 281
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=31.37 E-value=67 Score=21.63 Aligned_cols=56 Identities=13% Similarity=-0.111 Sum_probs=32.1
Q ss_pred EEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCC-CceeeecCCh
Q 025474 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPNH 163 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~-~fpll~Dp~~ 163 (252)
+|...+||.|++-.-.|.+. +...+.+-|..... .....|.+.+.. ..|++.|.+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL-----GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGR 60 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCE
Confidence 46678899998765555443 22345566654322 233456655544 4788887543
No 282
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=31.19 E-value=72 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCccccceEEEEeCCCCeEEEEEeCCCCCCCC
Q 025474 210 RGGWQQGGIIVAGPGKSNISYIHRDKEAGDDP 241 (252)
Q Consensus 210 g~~~q~GG~fVid~ggg~I~~~h~~~~~~D~p 241 (252)
||....-|.|.-++.||.|.|.|.++. +.||
T Consensus 89 GD~V~f~GeYe~n~kggvIHWTH~dp~-~~h~ 119 (131)
T PF11948_consen 89 GDQVEFYGEYEWNPKGGVIHWTHHDPR-GRHP 119 (131)
T ss_pred CCEEEEEEEEEECCCCCEEEeeccCCC-CCCC
Confidence 444567799999998899999999855 5555
No 283
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=31.00 E-value=1.2e+02 Score=21.10 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=29.0
Q ss_pred EEcCCCCHhHHHHHHHHHHcHHHHHh--CCCEEEEEeCCC--HHHHHHHHHHhCCCceeee
Q 025474 103 FARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGS--VEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~--~Gv~vV~Vs~~~--~~~~~~f~e~~~~~fpll~ 159 (252)
..|+.-||.=.-. ....+++ .|-.+.++.-++ .+.+..|++.+|..+-...
T Consensus 3 D~rG~~CP~Pvl~------~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 3 DACGLQCPGPILK------LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred ccCCCcCCHHHHH------HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 4577788862221 2222322 344444444443 3789999999888765443
No 284
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=30.79 E-value=2.1e+02 Score=21.29 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=39.4
Q ss_pred HcHHHHHhCCCEEEEEeCCCH----HHHHHHHHHhCCCceeeecCChHHHHHcCCccc
Q 025474 121 AKKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~----~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~ 174 (252)
+-...+++-.+.++.|..|-. ..+...+++.++|+ +|.|.-.+|-++.|+..+
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~-v~V~s~~~LGkAcgi~V~ 76 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV-SFFKSKHALGKHVGINVN 76 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCcC
Confidence 334455555677888877643 46778889988887 788999999999998754
No 285
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=30.49 E-value=3.1e+02 Score=25.12 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=46.0
Q ss_pred EEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEE-eCCCHHHHHHHHHHhCCCc--eeeecC-----ChHHHHHcCC
Q 025474 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYADP-----NHSSYEALSF 171 (252)
Q Consensus 100 vlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~V-s~~~~~~~~~f~e~~~~~f--pll~Dp-----~~~ly~alGv 171 (252)
+++.-|-.-- .. ..+.+--++...+.+.|+.+|.| ++.+.+++++|.+..+.|. .+..-+ +.+-.+++|+
T Consensus 151 ~~IiARTDa~-~~-~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv 228 (292)
T PRK11320 151 FVIMARTDAL-AV-EGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGV 228 (292)
T ss_pred eEEEEecCcc-cc-cCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCC
Confidence 5555563321 11 12444445567788999998887 4567799999999876654 233211 3455777888
Q ss_pred cccc
Q 025474 172 VSGV 175 (252)
Q Consensus 172 ~~~~ 175 (252)
..-.
T Consensus 229 ~~v~ 232 (292)
T PRK11320 229 AMVL 232 (292)
T ss_pred cEEE
Confidence 7643
No 286
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=30.47 E-value=1.5e+02 Score=20.28 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEcCCCCHhHHHHHHH-HHHcHHHHHhCCCEEEEEeCCCH--HHHHHHHHHhCCCceeeec
Q 025474 102 AFARHFGCVLCRKRADY-LAAKKDVMDASGVALVLIGPGSV--EQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~-L~~~~~~l~~~Gv~vV~Vs~~~~--~~~~~f~e~~~~~fpll~D 160 (252)
+..|+.-||...-.+.. |.++ +.|-.+.++.-++. +.+..|++++|+.+--..+
T Consensus 3 lD~rg~~CP~Pll~~~~~l~~l-----~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 3 LDLRGLSCPMPLLKAKKALKEL-----PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp EECSS-STTHHHHHHHHHHHTS-----GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHhc-----CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE
Confidence 56789999998665543 2222 23555655555543 7899999999987544433
No 287
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=30.29 E-value=1.7e+02 Score=23.80 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=36.9
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHH---HHHHHH-----hCCC-ceeeecCChHHHH
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQA---RTFSEQ-----TKFK-GEVYADPNHSSYE 167 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~---~~f~e~-----~~~~-fpll~Dp~~~ly~ 167 (252)
+...+.+.+++++|..++.++--+.... ++|.++ +++| .+++.-++..++.
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~ 89 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAA 89 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhh
Confidence 4455667778889999998888776554 578877 4576 5788877766643
No 288
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=30.07 E-value=1.6e+02 Score=32.11 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC----CHHHHHHHHHHhC-CC---------ceeeecC--
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTK-FK---------GEVYADP-- 161 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~----~~~~~~~f~e~~~-~~---------fpll~Dp-- 161 (252)
.+.|+|+|+.|..-+...+..| ..+|+++|+.+|.|... ..+.++.|....+ .. |.+...+
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaL---I~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~ 149 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDAL---IRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAG 149 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHH---HHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcc
Confidence 4788899999977776666655 55778899999999954 3356777766522 11 2333322
Q ss_pred -ChHHHHHcCCcc
Q 025474 162 -NHSSYEALSFVS 173 (252)
Q Consensus 162 -~~~ly~alGv~~ 173 (252)
...+.+.+|+..
T Consensus 150 ~~~~~L~~LnVPV 162 (1098)
T PF02514_consen 150 GAIELLKELNVPV 162 (1098)
T ss_pred hhHHHHHHCCCCE
Confidence 467888898863
No 289
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.02 E-value=2.2e+02 Score=23.29 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=26.7
Q ss_pred CCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-HHHHHHHHHHhC-----CCce-eeec
Q 025474 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-----FKGE-VYAD 160 (252)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~f~e~~~-----~~fp-ll~D 160 (252)
+||+|++--.-| ++.|+.+--+..+. .+..++..+..+ .+.| |+.|
T Consensus 15 t~~~C~~ak~iL-------~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 15 TFEDCNNVRAIL-------ESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred cChhHHHHHHHH-------HHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 899997654444 45567666666643 333444444433 3566 6666
No 290
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=29.85 E-value=1e+02 Score=21.11 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=32.1
Q ss_pred EEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC--CceeeecCChH
Q 025474 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--KGEVYADPNHS 164 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~--~fpll~Dp~~~ 164 (252)
+|....||+|++-.-.|.+. +...+++.+... ..-..|.+.+.. ..|++.|.+..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~-----gl~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~~~~~ 59 (74)
T cd03058 3 LLGAWASPFVLRVRIALALK-----GVPYEYVEEDLG--NKSELLLASNPVHKKIPVLLHNGKP 59 (74)
T ss_pred EEECCCCchHHHHHHHHHHc-----CCCCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEECCEE
Confidence 45567899999877766553 223455555443 222346555542 57888875443
No 291
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=29.68 E-value=1e+02 Score=26.02 Aligned_cols=47 Identities=6% Similarity=0.103 Sum_probs=37.4
Q ss_pred HcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ceeeecCChHHHH
Q 025474 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fpll~Dp~~~ly~ 167 (252)
+...+++++|+.++.++--+...++.+.+..++. .++++.....+|.
T Consensus 23 ~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 23 PWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEc
Confidence 4455578899999999999999999999998877 6677766666654
No 292
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.64 E-value=85 Score=26.42 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=49.4
Q ss_pred CCCCcEEecCCCCeEeCCC--ccCCC-cEEEEEEcCCCCHhHHHHH-HHHHHcHHHHHhCCC--EEEEEeCC-------C
Q 025474 74 LLDTVKVYDVNGNAIPISD--LWKDR-KAVVAFARHFGCVLCRKRA-DYLAAKKDVMDASGV--ALVLIGPG-------S 140 (252)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~--l~~~~-~vvlvF~R~~~Cp~C~~el-~~L~~~~~~l~~~Gv--~vV~Vs~~-------~ 140 (252)
-.|+..+.|... +++.. |.+.+ +.||+-+=.+-++.=..++ +++.+..+++++.+. +|+.||-. +
T Consensus 17 ~~P~l~V~si~~--I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 17 LLPHLYVPSIRD--IDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred cCCCEEcCChhh--CCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 456666665442 34444 53333 6677666666554444443 466677777777765 48999876 3
Q ss_pred HHHHHHHHHHhCCCc
Q 025474 141 VEQARTFSEQTKFKG 155 (252)
Q Consensus 141 ~~~~~~f~e~~~~~f 155 (252)
.++++.+.+.+++|+
T Consensus 95 ~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 95 GERAEALEKALGIPV 109 (168)
T ss_pred HHHHHHHHHhhCCcE
Confidence 567888888877664
No 293
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=29.50 E-value=1e+02 Score=23.24 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=15.2
Q ss_pred CCCCHhHHHHHHHHHHc
Q 025474 106 HFGCVLCRKRADYLAAK 122 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~ 122 (252)
-..||+|+.++..+.+.
T Consensus 4 Dg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRR 20 (114)
T ss_pred CCCCHhHHHHHHHHHhc
Confidence 56899999999999886
No 294
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=29.17 E-value=1.6e+02 Score=24.69 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHH
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly 166 (252)
..+...+++++|+.++.++--+...+..+.+..+++.++++.....+|
T Consensus 25 ~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~ 72 (230)
T PRK01158 25 AVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVIS 72 (230)
T ss_pred HHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEE
Confidence 334455677899999988888888888888888887666665544444
No 295
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=29.01 E-value=13 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=25.2
Q ss_pred cEEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHH
Q 025474 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRAD 117 (252)
Q Consensus 78 f~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~ 117 (252)
++..|.+|++|.+-+-+.+. +.- .+.||.|-.++.
T Consensus 2 ltA~~~ngq~v~ll~~~~k~--~~~---~ffCPaC~~~l~ 36 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKT--QLQ---RFFCPACGSQLI 36 (342)
T ss_pred ceeecCCCCEEEehhhHHHh--hhh---ccccCCCCCeee
Confidence 57889999999988764332 221 478999987653
No 296
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=28.97 E-value=92 Score=26.09 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..+..+.++++|.+++.||.+....++.+.+..++.
T Consensus 90 ~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 90 AEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred HHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 344456677889999999999888888898888775
No 297
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.56 E-value=2.3e+02 Score=21.51 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++.-+++++-.+|. -.++.+..+..+++|+++|+|..+. .+.+++++.+..
T Consensus 42 ~~~dl~I~iS~SG~------t~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~ 92 (119)
T cd05017 42 DRKTLVIAVSYSGN------TEETLSAVEQAKERGAKIVAITSGG--KLLEMAREHGVP 92 (119)
T ss_pred CCCCEEEEEECCCC------CHHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcCCc
Confidence 34456666666664 2344444455677899999999655 377777776544
No 298
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.42 E-value=1e+02 Score=27.00 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCc------eeeecCChH
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG------EVYADPNHS 164 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~f------pll~Dp~~~ 164 (252)
+.++-..|+++|++|+.||-+=...+..-++++++|+ .++-|.+.+
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk 144 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGK 144 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCc
Confidence 4555667889999999999998878888889999998 355555544
No 299
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.42 E-value=1.2e+02 Score=21.12 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=29.9
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhC--CCEEEEE--eCCCHHHHHHHHHHhCCCceeeec
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLI--GPGSVEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~vV~V--s~~~~~~~~~f~e~~~~~fpll~D 160 (252)
+..|+.-||.=-- +....+++. |-.+.++ .+.+.+.+..|+++.|..+-...+
T Consensus 2 lD~~G~~CP~P~i------~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 2 LDTRGLRCPEPVM------MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred ccccCCcCCHHHH------HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEE
Confidence 3457788886222 222233332 4333333 344457999999998888654443
No 300
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=28.27 E-value=1.7e+02 Score=24.44 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=51.2
Q ss_pred EEecCCCCeEeCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCH---HHHHHHHHHh----
Q 025474 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV---EQARTFSEQT---- 151 (252)
Q Consensus 79 ~l~d~~G~~v~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~---~~~~~f~e~~---- 151 (252)
-+.|.|| +++.+|.++. ++-+ +-..| .+ +...+++..+.++|.+++-++.-+. ...+.|.++.
T Consensus 2 VvsDIDG-TiT~SD~~G~--i~~~-~G~d~---~h---~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~ 71 (157)
T PF08235_consen 2 VVSDIDG-TITKSDVLGH--ILPI-LGKDW---TH---PGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQG 71 (157)
T ss_pred EEEeccC-CcCccchhhh--hhhc-cCchh---hh---hcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCC
Confidence 3567887 5777775322 1111 11123 22 2345567788899999999998765 4677898888
Q ss_pred -CCC-ceeeecCChHHHH
Q 025474 152 -KFK-GEVYADPNHSSYE 167 (252)
Q Consensus 152 -~~~-fpll~Dp~~~ly~ 167 (252)
++| .|++.-|++.+-.
T Consensus 72 ~~lP~Gpv~~sP~~l~~a 89 (157)
T PF08235_consen 72 HNLPDGPVLLSPDSLFSA 89 (157)
T ss_pred ccCCCCCEEECCcchhhh
Confidence 887 6888888765433
No 301
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=27.88 E-value=1.2e+02 Score=24.73 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.9
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..+....++++|+.++.||-+....++...+.+++.
T Consensus 85 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 85 AEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 345566778889999999998888888888888865
No 302
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=27.84 E-value=63 Score=29.22 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=14.5
Q ss_pred HHHHHhCCCEEEEEeCCCH
Q 025474 123 KDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 123 ~~~l~~~Gv~vV~Vs~~~~ 141 (252)
..++++.|+.++.|..+++
T Consensus 187 ~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 187 LREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHcCCeEEEEEEcCC
Confidence 4567788888888887765
No 303
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=27.79 E-value=64 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHH---HHcHHHHHhCCCEEEE
Q 025474 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVL 135 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L---~~~~~~l~~~Gv~vV~ 135 (252)
++. |+.|..+.||+|...-+.| ....+.+ ..|+.++-
T Consensus 38 ~~~-VvEffdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~ 77 (207)
T PRK10954 38 EPQ-VLEFFSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTK 77 (207)
T ss_pred CCe-EEEEeCCCCccHHHhcccccchHHHHHhC-CCCCeEEE
Confidence 444 5556689999999976654 3333333 34555543
No 304
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=27.62 E-value=1.1e+02 Score=27.16 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=28.9
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+..|.++..++.+.|+.||||.+|-...-...+.++|+.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~ 233 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCC
Confidence 556677788899999999999999765444444555653
No 305
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=27.37 E-value=3.9e+02 Score=24.51 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=41.3
Q ss_pred HHHHHHcHHHHHhCCCEEEEE-eCCCHHHHHHHHHHhCCCc--eeeec-----CChHHHHHcCCcccc
Q 025474 116 ADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGV 175 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~V-s~~~~~~~~~f~e~~~~~f--pll~D-----p~~~ly~alGv~~~~ 175 (252)
+.+--++...+.+.|+.+|.| +..+.++++++.++...|. .++.- .+.+-.+++|+..-.
T Consensus 164 ~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~ 231 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAI 231 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEE
Confidence 344444566788999999998 4567799999999876654 34432 245567778887644
No 306
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.37 E-value=1.5e+02 Score=22.15 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHH
Q 025474 129 SGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (252)
Q Consensus 129 ~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~l 165 (252)
.++++++|.-.+++..+.|.++++++ .|.|.+.-+
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll 58 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYGIP--VYTDLEELL 58 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTTSE--EESSHHHHH
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhccc--chhHHHHHH
Confidence 36799999998999999999887777 787755333
No 307
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=27.28 E-value=58 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=22.7
Q ss_pred EEEeCCCHHHHHHHHHHhCCCceeeecCCh
Q 025474 134 VLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 134 V~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~ 163 (252)
+-+..++.+++.+|++++|++|.|.....+
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p~~r 80 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEPKKR 80 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-STT-
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCCCCC
Confidence 556778899999999999999988865443
No 308
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=26.76 E-value=1.9e+02 Score=24.15 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCC
Q 025474 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 123 ~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~ 162 (252)
..+++++|+.++..+--+...+..+.++.+++.++++.-.
T Consensus 24 l~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nG 63 (225)
T TIGR01482 24 IRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENG 63 (225)
T ss_pred HHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecC
Confidence 4557789999988888888888889888887666655433
No 309
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.75 E-value=1e+02 Score=26.86 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=24.4
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCCceeeecC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~fpll~Dp 161 (252)
..+|.++.+.+++.++++|...+... ..++...++.+.+. +..|+
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~v-v~ld~ 230 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKV-VYLDP 230 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EE-EESST
T ss_pred HHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcE-EEeCC
Confidence 34555566666777777777766544 34455555655554 44443
No 310
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=26.63 E-value=1.5e+02 Score=28.19 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=36.3
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~ 162 (252)
+..|.++..+|++.|+.+++...++.+.+.++++++++. .|+.|.+
T Consensus 60 ~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~-~V~~~~~ 105 (429)
T TIGR02765 60 LESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR-TVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC-EEEEecc
Confidence 357888889999999999998777778889999987654 3666643
No 311
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.61 E-value=1.6e+02 Score=25.62 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC-----------HHHHHHHHHHhCCCce--eeecCChHHHHHcCC
Q 025474 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-----------VEQARTFSEQTKFKGE--VYADPNHSSYEALSF 171 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~-----------~~~~~~f~e~~~~~fp--ll~Dp~~~ly~alGv 171 (252)
|..|.+|..++-+ .+.+.|.++++-...+ .+..++|+++++++|- -|.|.+.-+-++=|+
T Consensus 9 H~CCAPcs~y~le------~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg~ 81 (204)
T COG1636 9 HSCCAPCSGYVLE------KLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKGM 81 (204)
T ss_pred EeecCCCcHHHHH------HHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHHhhcc
Confidence 8999999987643 3445577776655432 2467889999998862 444444334444444
No 312
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=26.48 E-value=1.2e+02 Score=26.69 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCce--eeecCChHHHH
Q 025474 110 VLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (252)
Q Consensus 110 p~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fp--ll~Dp~~~ly~ 167 (252)
.-+...+.+|.+......+.++.++.++--+.+.+++..++.+++.| +++|-..++|.
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYY 74 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEE
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Confidence 55666677777766644466777777777788999999998888877 88888888777
No 313
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=26.17 E-value=37 Score=24.32 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=26.3
Q ss_pred ccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 214 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 214 q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
..+|.|-|.-+ |+++|.-.. .+..|+.++|+++++
T Consensus 40 ~~~G~FEV~v~-g~lI~SK~~--~g~fP~~~~i~~~I~ 74 (76)
T PF10262_consen 40 GSTGAFEVTVN-GELIFSKLE--SGRFPDPDEIVQLIR 74 (76)
T ss_dssp ESTT-EEEEET-TEEEEEHHH--HTSSS-HHHHHHHHH
T ss_pred ccCCEEEEEEc-cEEEEEehh--cCCCCCHHHHHHHHh
Confidence 35688998887 699987665 459999999999886
No 314
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=26.16 E-value=1.6e+02 Score=24.74 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+.+....++++|+++..++......++.+.++.++.
T Consensus 97 ~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 132 (222)
T PRK10826 97 VREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR 132 (222)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch
Confidence 445556677889999999998888888888887754
No 315
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=25.99 E-value=78 Score=21.83 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=33.9
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHH-HHHHHHHHhCC-CceeeecCChH
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYADPNHS 164 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~-~~~~f~e~~~~-~fpll~Dp~~~ 164 (252)
.+|.+..|+.|++-.-.|.+. +...+++.|.....+ ...+|.+.+.+ ..|++.|.+..
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~-----g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~ 61 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLN-----KIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFT 61 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHc-----CCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEE
Confidence 356778899998776655442 223456666554322 22356665554 37888876543
No 316
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=25.72 E-value=86 Score=26.62 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=25.7
Q ss_pred cCCCcEEEEEEcCCCCHhHHHHHHHHHH
Q 025474 94 WKDRKAVVAFARHFGCVLCRKRADYLAA 121 (252)
Q Consensus 94 ~~~~~vvlvF~R~~~Cp~C~~el~~L~~ 121 (252)
|.++|.+++-|-+.+-.-|+.+++++.-
T Consensus 116 W~gKPalivSyGGhGGg~c~~qL~~v~~ 143 (199)
T KOG4530|consen 116 WAGKPALIVSYGGHGGGRCQYQLRQVGV 143 (199)
T ss_pred hcCCceEEEEecCCCCchHHHHHHHHHh
Confidence 7889999999999999999999988765
No 317
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=25.51 E-value=1.3e+02 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..+...+++++|+.+..|+....+.++...+.+++.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 455667788889999999988888888888887765
No 318
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.25 E-value=70 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=25.3
Q ss_pred EEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEE
Q 025474 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (252)
Q Consensus 101 lvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV 134 (252)
|.||--+.||.|..-.+.|.++..++ ..+++|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~-~~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY-GGGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh-CCCceEE
Confidence 45777899999999999999888777 2345544
No 319
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.22 E-value=2e+02 Score=23.79 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC--C-ceeeecCChHHHHHcC
Q 025474 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--K-GEVYADPNHSSYEALS 170 (252)
Q Consensus 113 ~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~--~-fpll~Dp~~~ly~alG 170 (252)
.+.+..+.+....|.+.|..||+-......+.+++..+.-- . ++||.|-..+..++=.
T Consensus 57 ~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 57 EENIRRIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 35666777778888999998887777776777776655422 2 5799998887776543
No 320
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.94 E-value=1.2e+02 Score=28.77 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 111 LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 111 ~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
.|..-...+......+.+.+.+|++|..-+.+.+++|++++++|
T Consensus 13 g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 13 GAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP 56 (351)
T ss_pred ehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC
Confidence 35566666666555555688999999988889999999999993
No 321
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=24.79 E-value=3.3e+02 Score=24.57 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=34.0
Q ss_pred HHHcHHHHHhCCC-EEEEEeCC------CH-HHHHHHHHHhCCCceeeecCChHHHHHcCCcc
Q 025474 119 LAAKKDVMDASGV-ALVLIGPG------SV-EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 119 L~~~~~~l~~~Gv-~vV~Vs~~------~~-~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~ 173 (252)
|.+..+.+++.|+ ++.+|..+ +. +-+....+++|+++.+++..+-..|..+|+..
T Consensus 58 l~~f~~~~~~~~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~ 120 (300)
T TIGR03706 58 LKRFAELLRGFPVDEVRAVATAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAH 120 (300)
T ss_pred HHHHHHHHHhCCCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHh
Confidence 3444444556676 46666654 33 33455557789999988877777666666543
No 322
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=24.75 E-value=3.3e+02 Score=21.14 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=27.5
Q ss_pred CcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCC
Q 025474 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 97 ~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~ 139 (252)
.+.+++|=..+.||....-..+|++.++...+. +.+..+-.-
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~ 60 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI 60 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE
Confidence 466778888889999999999999988776543 666655543
No 323
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=24.08 E-value=1.2e+02 Score=25.09 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
...+....++++|+++..++..+...++.+.++.++.
T Consensus 89 g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 89 GVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 3445556778889999999998888888888888864
No 324
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.08 E-value=1.5e+02 Score=22.30 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHH
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f 147 (252)
..+++++=..+.. .++.+..+..+++|+++|+|.......+.++
T Consensus 61 ~~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 61 GDVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred CCEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 4566666666654 3445555667888999999998765555544
No 325
>PRK06683 hypothetical protein; Provisional
Probab=24.05 E-value=2.8e+02 Score=20.28 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=36.2
Q ss_pred HHHHhCCCEEEEEeCCCHH----HHHHHHHHhCCCceeeecCChHHHHHcCCcccc
Q 025474 124 DVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 124 ~~l~~~Gv~vV~Vs~~~~~----~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~ 175 (252)
..++...+++|.|..|-.+ .+...++.+++|+-.+ +...++-++.|+..+.
T Consensus 21 kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~-~t~~eLG~A~G~~~~~ 75 (82)
T PRK06683 21 EAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV-ESVRKLGKVAGIQVGA 75 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCcccE
Confidence 3455566889999887653 4555678888887444 4778899999987653
No 326
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.81 E-value=1.4e+02 Score=27.69 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=35.6
Q ss_pred HcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHH
Q 025474 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly 166 (252)
+...+++++|+.||..+--+..++..+.++.++..|+++.....+|
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~ 70 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIY 70 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEE
Confidence 3355677899999999999999999999999988766655444443
No 327
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=23.76 E-value=2.3e+02 Score=24.37 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=30.9
Q ss_pred HHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeee
Q 025474 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 120 ~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~ 159 (252)
.+...+++++|+.++.++--+...+..+.++.++..++++
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~ 60 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIV 60 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEE
Confidence 3445567889999999988888889999999887544443
No 328
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=23.73 E-value=2.2e+02 Score=23.59 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=34.5
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHH
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~l 165 (252)
..+...+++++|+.++..+--+...+..+.++.++..++++....-+
T Consensus 20 ~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i 66 (254)
T PF08282_consen 20 TIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALI 66 (254)
T ss_dssp HHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEE
T ss_pred HHHHHHhhcccceEEEEEccCcccccccccccccchhhhccccccee
Confidence 33344457779999988888888899999999888866665444333
No 329
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.71 E-value=2.2e+02 Score=19.25 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCC--HHHHHHHHHHhCCCceeeecC
Q 025474 129 SGVALVLIGPGS--VEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 129 ~Gv~vV~Vs~~~--~~~~~~f~e~~~~~fpll~Dp 161 (252)
.|-.+.++.-+. ...+..|++..|+.+-...+.
T Consensus 25 ~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~~ 59 (69)
T cd00291 25 SGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEE 59 (69)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEe
Confidence 354555555443 578999999999887544443
No 330
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=23.67 E-value=84 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=24.2
Q ss_pred EEEEEeCCCHHHHHHHHHHhCCCceeeecC
Q 025474 132 ALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 132 ~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp 161 (252)
.=|.|.+......+.+.+..+++|.++.|-
T Consensus 36 ~dv~V~p~~~~~f~~~L~~~~i~~~v~i~d 65 (74)
T PF02244_consen 36 VDVMVPPEKLEEFEELLKEHGIEYEVLIED 65 (74)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT-EEEEEES-
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEeHH
Confidence 357788888899999999999999988774
No 331
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=23.40 E-value=1.3e+02 Score=25.31 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ceeeecCChHHHHH
Q 025474 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYEA 168 (252)
Q Consensus 99 vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fpll~Dp~~~ly~a 168 (252)
..+-.|.+.+|++|++-.-.|.+. +..++++-|..+. .-.+|.+.+... .|++.|.+..+++.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~-----gl~~e~~~v~~~~--~~~~~~~~nP~g~VPvL~~~g~~l~ES 72 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEK-----GVSVEIEQVEKDN--LPQDLIDLNPYQSVPTLVDRELTLYES 72 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHC-----CCCCEEEeCCccc--CCHHHHHhCCCCCCCEEEECCEEeeCH
Confidence 345677778999999977666542 2234555554432 234677665553 78888766544443
No 332
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=23.19 E-value=1.5e+02 Score=25.80 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHHH
Q 025474 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEA 168 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~a 168 (252)
...+...+++++|+.++.++--+...+..+.++.++..++++.-...+|..
T Consensus 24 ~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 24 ETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred HHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 344445578899999999998888999999999999988888877777776
No 333
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=23.10 E-value=4.2e+02 Score=25.94 Aligned_cols=56 Identities=7% Similarity=-0.016 Sum_probs=39.0
Q ss_pred HHHcHHHHHhCCC-EEEEEeCC------CH-HHHHHHHHHhCCCceeeecCChHHHHHcCCccc
Q 025474 119 LAAKKDVMDASGV-ALVLIGPG------SV-EQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 119 L~~~~~~l~~~Gv-~vV~Vs~~------~~-~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~ 174 (252)
|.+..+.+++.++ ++.+|... +. +-+++..+++|++..+++..+-.-|..+|+...
T Consensus 64 L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~ 127 (496)
T PRK11031 64 LRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHT 127 (496)
T ss_pred HHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhc
Confidence 4444455566676 47777764 22 345566677899999999998888888887654
No 334
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.07 E-value=2e+02 Score=19.50 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=29.1
Q ss_pred EEEcCCCCHhHHHHHHHHHHcHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCC-CceeeecC
Q 025474 102 AFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp 161 (252)
-+|....||+|++-.-.|... +.| .+++.|... ..-.+|.+.+.. ..|++.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~-----~~~i~~~~~~~~~~--~~~~~~~~~~p~~~vP~l~~~ 57 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHET-----GLGDDVELVLVNPW--SDDESLLAVNPLGKIPALVLD 57 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHh-----CCCCCcEEEEcCcc--cCChHHHHhCCCCCCCEEEEC
Confidence 356778999999766665441 133 445555432 222345555443 36777643
No 335
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=22.79 E-value=2.4e+02 Score=20.59 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=7.6
Q ss_pred HHcHHHHHhCCCEEEEEeC
Q 025474 120 AAKKDVMDASGVALVLIGP 138 (252)
Q Consensus 120 ~~~~~~l~~~Gv~vV~Vs~ 138 (252)
.+...+++++|.++..++.
T Consensus 65 ~~~~~~~~~~~~~~~l~~~ 83 (108)
T TIGR00377 65 LGRYKQVRRVGGQLVLVSV 83 (108)
T ss_pred HHHHHHHHhcCCEEEEEeC
Confidence 3333333444444444433
No 336
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=22.77 E-value=1.5e+02 Score=23.88 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred cHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 122 ~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
..++|+++|+++..++-.+...++.+.+++++.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 356678899999999999888888898888876
No 337
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=22.71 E-value=2.2e+02 Score=20.04 Aligned_cols=46 Identities=9% Similarity=0.066 Sum_probs=31.4
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeC-CCHHHHHHHHHHhCCCceeeecC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~-~~~~~~~~f~e~~~~~fpll~Dp 161 (252)
.....+...+++..|+.+..-.. .+....-.++++.+++|-++.++
T Consensus 17 ~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECC
Confidence 33444456678888998776543 44456666778889998877765
No 338
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=22.70 E-value=2.2e+02 Score=20.58 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeC--CCHHHHHHHHHHhCCCce
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--GSVEQARTFSEQTKFKGE 156 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~--~~~~~~~~f~e~~~~~fp 156 (252)
+-..+..|+.-||.=.-.+. +..+++ +.|-.+.++.- ...+.+..|++..|..+-
T Consensus 8 ~~~~lD~~Gl~CP~Pll~~k---k~l~~l-~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 8 PDHTLDALGLRCPEPVMMVR---KTVRNM-QPGETLLIIADDPATTRDIPSFCRFMDHELL 64 (81)
T ss_pred cCeEEecCCCCCCHHHHHHH---HHHHcC-CCCCEEEEEeCCccHHHHHHHHHHHcCCEEE
Confidence 34567889999997322211 111222 23444444443 344789999999887763
No 339
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=22.63 E-value=1.6e+02 Score=21.79 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=25.5
Q ss_pred ccccceEEEEeCCCCeEEEEEeCCC----CCCCCCHHHHHHHh
Q 025474 212 GWQQGGIIVAGPGKSNISYIHRDKE----AGDDPDIQDILKAC 250 (252)
Q Consensus 212 ~~q~GG~fVid~ggg~I~~~h~~~~----~~D~p~~~eIL~al 250 (252)
..+.|+.+|-+.+++.|...|-..+ +..|++...|.++.
T Consensus 17 ~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~ 59 (96)
T cd00786 17 NFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAG 59 (96)
T ss_pred CCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHH
Confidence 4678888876534334544554443 77888888887764
No 340
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=22.61 E-value=1.4e+02 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=27.0
Q ss_pred cccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025474 213 WQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 213 ~q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~al~ 251 (252)
.+.|+++| +++|..|.-.|-...+..|+++..|.++.+
T Consensus 19 ~pvGaviv-~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~ 56 (115)
T cd01284 19 PPVGCVIV-DDDGEIVGEGYHRKAGGPHAEVNALASAGE 56 (115)
T ss_pred CCEEEEEE-eCCCeEEEEecCCCCCcccHHHHHHHHHhh
Confidence 46777666 444345666777777889999999988765
No 341
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.57 E-value=1.7e+02 Score=26.37 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK 154 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~ 154 (252)
..+|.++...+++.|+++|.+.++.. ..++...++.|.+
T Consensus 212 ~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 212 PKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 34455566666777777777766533 4556666666665
No 342
>PRK10854 exopolyphosphatase; Provisional
Probab=22.49 E-value=4.7e+02 Score=25.71 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHcHHHHHhCCC-EEEEEeCC------CH-HHHHHHHHHhCCCceeeecCChHHHHHcCCcccc
Q 025474 118 YLAAKKDVMDASGV-ALVLIGPG------SV-EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv-~vV~Vs~~------~~-~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~~~~ 175 (252)
.|.+..+.+++.|+ ++.+|... +. +-+++..+++|++..+++..+-.-|..+|+...+
T Consensus 68 ~L~~F~~~~~~~~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l 133 (513)
T PRK10854 68 CLSLFAERLQGFSPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQ 133 (513)
T ss_pred HHHHHHHHHHhCCCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhccc
Confidence 34445555667776 47777764 22 3455666778999999999888888888876543
No 343
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=22.49 E-value=2.4e+02 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeee
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~ 159 (252)
..+...+++++|+.++..+--+...++.+.+..++..++++
T Consensus 23 ~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~ 63 (215)
T TIGR01487 23 AIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVA 63 (215)
T ss_pred HHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEE
Confidence 34445567788999988888888888888888887644443
No 344
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=22.43 E-value=2.7e+02 Score=24.01 Aligned_cols=47 Identities=6% Similarity=0.133 Sum_probs=35.1
Q ss_pred HcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHHH
Q 025474 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYE 167 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly~ 167 (252)
+...+++++|+.++.++-.+...+..+.++.++..++++.-...+|.
T Consensus 23 ~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~ 69 (256)
T TIGR00099 23 EALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVID 69 (256)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEEC
Confidence 34556778899999999988888999988888876666555544443
No 345
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=22.23 E-value=1.4e+02 Score=26.55 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=35.0
Q ss_pred HHHHcHHHHHhCCCE-EEEEeCC------CH-HHHHHHHHHhCCCceeeecCChHHHHHcCCc
Q 025474 118 YLAAKKDVMDASGVA-LVLIGPG------SV-EQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~-vV~Vs~~------~~-~~~~~f~e~~~~~fpll~Dp~~~ly~alGv~ 172 (252)
.|++....+++.|++ +.+|..+ +. +-+++..+++|+++.+++..+-.-|..+|+.
T Consensus 43 ~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~ 105 (285)
T PF02541_consen 43 ALKRFKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVL 105 (285)
T ss_dssp HHHHHHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHH
Confidence 344555556677764 6677654 33 3456667788999999988777776666654
No 346
>PLN02378 glutathione S-transferase DHAR1
Probab=22.09 E-value=1.1e+02 Score=25.91 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=34.1
Q ss_pred CCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ceeeecCChHHHHHcC
Q 025474 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYEALS 170 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~-fpll~Dp~~~ly~alG 170 (252)
...||+|++-.-.|.+. ...++++-|...+. -.+|.+.+... .|++.|.+..+++...
T Consensus 17 ~~~~p~~~rv~~~L~e~-----gl~~e~~~v~~~~~--~~~~l~inP~G~VPvL~~~~~~l~ES~a 75 (213)
T PLN02378 17 LGDCPFSQRALLTLEEK-----SLTYKIHLINLSDK--PQWFLDISPQGKVPVLKIDDKWVTDSDV 75 (213)
T ss_pred CCCCcchHHHHHHHHHc-----CCCCeEEEeCcccC--CHHHHHhCCCCCCCEEEECCEEecCHHH
Confidence 46799999987777443 22345565554332 22566665553 6777776655544433
No 347
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.06 E-value=1.2e+02 Score=29.97 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC
Q 025474 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 96 ~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~ 140 (252)
++|+-|-.|-..+||+|..-...+.+...+.. ++..-.|-...
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~ 517 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSH 517 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcc
Confidence 36776777779999999977777755544321 56665655543
No 348
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=21.78 E-value=1.5e+02 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=32.2
Q ss_pred HHHHHcHHHHHhCCC-EEEEEeCCCHHHHHHHHHHhCCC
Q 025474 117 DYLAAKKDVMDASGV-ALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv-~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++..+..++++++|+ ++..++-++...++...++.++.
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~ 403 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID 403 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh
Confidence 456666778889999 99999999999999999998874
No 349
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.71 E-value=2.7e+02 Score=18.98 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=32.0
Q ss_pred HHHHHHHcHHHHHhCCCEEEEEeCC-CHHHHHHHHHHhCCCceeeecC
Q 025474 115 RADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 115 el~~L~~~~~~l~~~Gv~vV~Vs~~-~~~~~~~f~e~~~~~fpll~Dp 161 (252)
......++..+|++.|+.+.....+ +....-.+++..++++-++.+.
T Consensus 13 ~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 13 ALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcH
Confidence 3344455677788889987665443 5566667788888888777664
No 350
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=21.67 E-value=2.7e+02 Score=23.68 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCce--eeecCChHHH
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSY 166 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fp--ll~Dp~~~ly 166 (252)
..+.+... ..++|+.++.++--+...++.+.++.+++.| ++.+-...++
T Consensus 18 ~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i~ 68 (236)
T TIGR02471 18 ASFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEIY 68 (236)
T ss_pred HHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceEE
Confidence 33444444 4788999988888889999999999888655 6676655553
No 351
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.42 E-value=4.3e+02 Score=21.19 Aligned_cols=26 Identities=19% Similarity=0.412 Sum_probs=14.8
Q ss_pred HHhCCCEEEEEeCC------CHHHHHHHHHHh
Q 025474 126 MDASGVALVLIGPG------SVEQARTFSEQT 151 (252)
Q Consensus 126 l~~~Gv~vV~Vs~~------~~~~~~~f~e~~ 151 (252)
+++.|+..|-.+.+ +.+.+++..+..
T Consensus 138 ~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 138 AAEAGADFIKTSTGFGGGGATVEDVKLMKEAV 169 (201)
T ss_pred HHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhc
Confidence 34456666666665 555555555544
No 352
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=21.37 E-value=5.3e+02 Score=23.48 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHcHHHHHhCCCEEEEEe-CCCHHHHHHHHHHhCCCc--eeeec-----CChHHHHHcCCcccc
Q 025474 116 ADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGV 175 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs-~~~~~~~~~f~e~~~~~f--pll~D-----p~~~ly~alGv~~~~ 175 (252)
+.+--++...+.+.|+.+|.|- ..+.+++++|.++...|. .++.- .+.+-.+++|+..-.
T Consensus 160 ~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~ 227 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVI 227 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEE
Confidence 3444445667889999988884 566789999999876554 22321 135557788887643
No 353
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=21.16 E-value=3.4e+02 Score=20.16 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+.||+.+.+ .+.....-+..|.+..++++.+|++++.++..+ .+....+..++.
T Consensus 49 ~~vIlD~s~-v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~--~v~~~l~~~~~~ 102 (117)
T PF01740_consen 49 KNVILDMSG-VSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP--DVRRILERSGLI 102 (117)
T ss_dssp SEEEEEETT-ESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH--HHHHHHHHTTGH
T ss_pred eEEEEEEEe-CCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHcCCC
Confidence 466666644 467777888899999999999999999998853 455556666654
No 354
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=21.14 E-value=1.6e+02 Score=23.55 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=27.3
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+.+..+.+++.|+.+..+|.+....++...+.+++.
T Consensus 77 ~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 77 FKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh
Confidence 344556677889999999888888788887777764
No 355
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=21.14 E-value=1.1e+02 Score=20.94 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=21.9
Q ss_pred cccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHH
Q 025474 213 WQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILK 248 (252)
Q Consensus 213 ~q~GG~fVid~ggg~I~~~h~~~~~~D~p~~~eIL~ 248 (252)
+-.+++||+|.+ .-+|.|.++. ++..+-..
T Consensus 15 L~s~~~yIld~~--~~i~vW~G~~----~~~~e~~~ 44 (76)
T PF00626_consen 15 LNSDDCYILDCG--YEIFVWVGKK----SSPEEKAF 44 (76)
T ss_dssp EETTSEEEEEES--SEEEEEEHTT----SHHHHHHH
T ss_pred cCCCCEEEEEeC--CCcEEEEecc----CCHHHHHH
Confidence 456789999974 6999999987 45444433
No 356
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.12 E-value=2.7e+02 Score=24.25 Aligned_cols=46 Identities=4% Similarity=0.014 Sum_probs=34.6
Q ss_pred HcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHH
Q 025474 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly 166 (252)
+...+++++|+.++..+--+...++.+.++.+++.++++.-...+|
T Consensus 26 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~ 71 (272)
T PRK15126 26 STLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVH 71 (272)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEE
Confidence 3345577899999888888888899999998887666655554444
No 357
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=20.99 E-value=3.1e+02 Score=19.53 Aligned_cols=48 Identities=6% Similarity=0.054 Sum_probs=32.3
Q ss_pred HHHHH-HHcHHHHHhCCCEEEEEeC-CCHHHHHHHHHHhCCCceeeecCC
Q 025474 115 RADYL-AAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 115 el~~L-~~~~~~l~~~Gv~vV~Vs~-~~~~~~~~f~e~~~~~fpll~Dp~ 162 (252)
++.++ .++...|.+.|+.+..-.. .+....-..++..++||-++..++
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECch
Confidence 33433 4467889999988776643 444555566777899998887643
No 358
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=20.98 E-value=37 Score=27.87 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.1
Q ss_pred eccC-CCCCCCccccCCc
Q 025474 28 ILPN-QSPLWRPRHWNKT 44 (252)
Q Consensus 28 ~~~~-~~~~~~~~~~~~~ 44 (252)
|+|- +|.-|||+|.|+-
T Consensus 65 v~kMvmSIGwNP~Y~N~~ 82 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKK 82 (153)
T ss_pred ceeEEEEcccCcccCCcc
Confidence 6665 8999999998864
No 359
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.96 E-value=1.7e+02 Score=25.33 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=34.4
Q ss_pred HcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCChHHH
Q 025474 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 121 ~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~~ly 166 (252)
+...+++++|+.++..+--+...+..+.++.++..++++.-...+|
T Consensus 27 ~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~ 72 (272)
T PRK10530 27 EALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLY 72 (272)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEE
Confidence 4455678899998888777778888899998887666666555555
No 360
>PRK10200 putative racemase; Provisional
Probab=20.93 E-value=1.8e+02 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=29.8
Q ss_pred HHHHHHHcHHHHHhCCCEEEEEeCCCHHH-HHHHHHHhCCC
Q 025474 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFK 154 (252)
Q Consensus 115 el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~-~~~f~e~~~~~ 154 (252)
-.+.|.+....|++.|++.|+|.+-+... .....++.++|
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iP 100 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLP 100 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 45778888889999999999999998743 44455554444
No 361
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=20.90 E-value=1.2e+02 Score=26.81 Aligned_cols=56 Identities=4% Similarity=-0.067 Sum_probs=35.2
Q ss_pred CCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeecCChHHHHH
Q 025474 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNHSSYEA 168 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~-~fpll~Dp~~~ly~a 168 (252)
...||+|++-.-.|.+ +....+++-|..... -..|.+.+.. ..|++.|.+..+++.
T Consensus 16 ~~~cp~~~rv~i~L~e-----kgi~~e~~~vd~~~~--~~~fl~inP~g~vPvL~~~g~~l~ES 72 (236)
T TIGR00862 16 IGNCPFSQRLFMILWL-----KGVVFNVTTVDLKRK--PEDLQNLAPGTHPPFLTYNTEVKTDV 72 (236)
T ss_pred CCCCHhHHHHHHHHHH-----cCCCcEEEEECCCCC--CHHHHHHCcCCCCCEEEECCEEeecH
Confidence 3679999999888875 233356666665532 3456666555 367777765555443
No 362
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=20.81 E-value=2.1e+02 Score=28.50 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
++..+..+++++.|++++.++-++...++...++++++
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 34555567788889999988888888889999998885
No 363
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.78 E-value=2.7e+02 Score=19.72 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=30.1
Q ss_pred HHHHHHHcHHHHHhCCCEEEEEeC-CCHHHHHHHHHHhCCCceeeecC
Q 025474 115 RADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 115 el~~L~~~~~~l~~~Gv~vV~Vs~-~~~~~~~~f~e~~~~~fpll~Dp 161 (252)
......++..+|++.|+.+..-.. .+....-+++++.+++|-++..+
T Consensus 16 ~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~ 63 (94)
T cd00861 16 QQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGK 63 (94)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECC
Confidence 334445566778888988876432 33444555667788998877653
No 364
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.74 E-value=2.6e+02 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCC
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK 154 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~~~-~~~~~f~e~~~~~ 154 (252)
..+|.++.+.+++.++++|.+-+... ..++...++.|.+
T Consensus 203 ~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~ 242 (266)
T cd01018 203 PADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAK 242 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCe
Confidence 34555555666677777666665533 3455555666654
No 365
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=20.57 E-value=5.8e+02 Score=23.19 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHcHHHHHhCCCEEEEEe--CCCHHHHHHHHHHhCC---CceeeecC------ChHHHHHcCCccc
Q 025474 116 ADYLAAKKDVMDASGVALVLIG--PGSVEQARTFSEQTKF---KGEVYADP------NHSSYEALSFVSG 174 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs--~~~~~~~~~f~e~~~~---~fpll~Dp------~~~ly~alGv~~~ 174 (252)
+.+--++...+.+.|+.+|.|- ..+.++++++.+.... +.|++.-+ +.+-.+++|+.+-
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v 237 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVV 237 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEE
Confidence 3444445667789999999996 4677899999988753 34544422 4556777888764
No 366
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.54 E-value=1.8e+02 Score=28.42 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=43.4
Q ss_pred EecCCCCeEeCCCcc----C--CCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Q 025474 80 VYDVNGNAIPISDLW----K--DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 80 l~d~~G~~v~ls~l~----~--~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~ 153 (252)
+.+..|....|++=. + ++|+-+-.|=...||+|..-++.+.++..+ .-++..-.| +.....++.+++++
T Consensus 93 i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~--~~~i~~~~i---d~~~~~~~~~~~~v 167 (517)
T PRK15317 93 LLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL--NPNITHTMI---DGALFQDEVEARNI 167 (517)
T ss_pred HHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh--CCCceEEEE---EchhCHhHHHhcCC
Confidence 344555555554321 1 467767777799999999877777665432 234554444 22234445555554
Q ss_pred C-ce-eeecC
Q 025474 154 K-GE-VYADP 161 (252)
Q Consensus 154 ~-fp-ll~Dp 161 (252)
. .| ++.|.
T Consensus 168 ~~VP~~~i~~ 177 (517)
T PRK15317 168 MAVPTVFLNG 177 (517)
T ss_pred cccCEEEECC
Confidence 4 34 55554
No 367
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=20.39 E-value=2.9e+02 Score=21.88 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=25.9
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
+...+....+++.|+++.+++..+... ....++.++.
T Consensus 88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~ 124 (183)
T TIGR01509 88 PGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR 124 (183)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH
Confidence 445566677788899999998887766 5555546653
No 368
>PRK05370 argininosuccinate synthase; Validated
Probab=20.38 E-value=2.6e+02 Score=27.33 Aligned_cols=71 Identities=7% Similarity=-0.064 Sum_probs=48.7
Q ss_pred eCCCccCCCcEEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEeCCC----H---HHHHHHHHHhCCCceeeecC
Q 025474 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS----V---EQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 89 ~ls~l~~~~~vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs~~~----~---~~~~~f~e~~~~~fpll~Dp 161 (252)
-|++|.++++|||.|--+--..+|...+ ++.|++||++..|- . +.+++=+...|..=-.+.|-
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL----------~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWM----------RQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHH----------HhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 3567777889999887777777776554 33478888886532 2 35555555666655588898
Q ss_pred ChHHHHHc
Q 025474 162 NHSSYEAL 169 (252)
Q Consensus 162 ~~~ly~al 169 (252)
..++++.|
T Consensus 74 r~eF~e~~ 81 (447)
T PRK05370 74 RAQLVAEG 81 (447)
T ss_pred HHHHHHHH
Confidence 88887765
No 369
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.32 E-value=1.9e+02 Score=21.75 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=28.2
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeecCCh
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~fpll~Dp~~ 163 (252)
.++.+..+.+++.|+++|+|.......+.++. ...+.+-.+++.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a---d~~l~~~~~~~~ 110 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLA---DIVLYIPTGEES 110 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS---SEEEEEESSCGS
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC---CEEEEecCCCcc
Confidence 45555555678899999999977665555554 344555555443
No 370
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=20.26 E-value=3.3e+02 Score=22.24 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHcHHHHHhCCCEEEEEeCCC-HHHHHHHHHHhCCC
Q 025474 117 DYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~l~~~Gv~vV~Vs~~~-~~~~~~f~e~~~~~ 154 (252)
+.+.+..+++++.|.+++.++-.+ ...++.+.+.+++.
T Consensus 46 pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 46 PALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 455666788889999999999887 45666666666654
No 371
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=20.26 E-value=2.2e+02 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCHhHHHHHHHHHHcHHHHHhCCCEEEEEe
Q 025474 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (252)
Q Consensus 99 vvlvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~vV~Vs 137 (252)
.||+|+.++.|.... ...+.+.+...|..||++-
T Consensus 18 PVv~f~~G~~~~~s~-----Ys~ll~hvAShGyIVV~~d 51 (259)
T PF12740_consen 18 PVVLFLHGFLLINSW-----YSQLLEHVASHGYIVVAPD 51 (259)
T ss_pred CEEEEeCCcCCCHHH-----HHHHHHHHHhCceEEEEec
Confidence 477788787754443 6667777888999998887
No 372
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=20.22 E-value=1.2e+02 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.6
Q ss_pred HHHcHHHHHhCCCEEEEEeCCCHH
Q 025474 119 LAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 119 L~~~~~~l~~~Gv~vV~Vs~~~~~ 142 (252)
+.+....++++|++|++|+.++..
T Consensus 128 ~~~~a~~lk~~gV~i~~vGiG~~~ 151 (192)
T cd01473 128 LQDISLLYKEENVKLLVVGVGAAS 151 (192)
T ss_pred HHHHHHHHHHCCCEEEEEEecccc
Confidence 445556788999999999998763
No 373
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=20.11 E-value=1.5e+02 Score=24.69 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Q 025474 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 118 ~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~ 154 (252)
.+.+...+++++|+.+.+|+..+...+....++.++.
T Consensus 98 g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 98 GVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH
Confidence 4555667788899999999998887777778887764
No 374
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=20.11 E-value=1.7e+02 Score=22.17 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=23.6
Q ss_pred cccceEEEEeCCCCeEEEEEeCC-----CCCCCCCHHHHHHHhh
Q 025474 213 WQQGGIIVAGPGKSNISYIHRDK-----EAGDDPDIQDILKACC 251 (252)
Q Consensus 213 ~q~GG~fVid~ggg~I~~~h~~~-----~~~D~p~~~eIL~al~ 251 (252)
.+.|+++ ++++ |+|+..-++. ++..|+++..|.++.+
T Consensus 17 ~~vgavi-v~~~-~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~ 58 (109)
T cd01285 17 VPFGAVI-VDDD-GKVIARGHNRVEQDGDPTAHAEIVAIRNAAR 58 (109)
T ss_pred CcEEEEE-EeCC-CEEEEEEeCCCCCCCCCcccHHHHHHHHHHH
Confidence 4455555 5655 4665544443 3789999998887754
No 375
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=20.09 E-value=2.5e+02 Score=27.19 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHcHHHHHhCCCEEEEEeCC-CHHHHHHHHHHhCCCceeeec
Q 025474 116 ADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 116 l~~L~~~~~~l~~~Gv~vV~Vs~~-~~~~~~~f~e~~~~~fpll~D 160 (252)
+..|.++..+|++.|..++++..+ ..+.+.++++++++. .|+.+
T Consensus 50 ~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~-~v~~~ 94 (475)
T TIGR02766 50 KQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGAT-RLFFN 94 (475)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCC-EEEEe
Confidence 468888899999999999988554 457788888887765 24444
No 376
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=20.00 E-value=2.8e+02 Score=20.31 Aligned_cols=58 Identities=5% Similarity=0.091 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCHhHHH-HHHHHHHcHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC--ceeeec
Q 025474 99 AVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GEVYAD 160 (252)
Q Consensus 99 vvlvF~R~~~Cp~C~~-el~~L~~~~~~l~~~Gv~vV~Vs~~~~~~~~~f~e~~~~~--fpll~D 160 (252)
.+++- -.+++++-. -+..|.....+++++|.+++.++... .+++..+..++. ++++.|
T Consensus 41 ~vilD--ls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~i~~~ 101 (106)
T TIGR02886 41 HLILN--LKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSP--AVKRLFELSGLFKIIRIYES 101 (106)
T ss_pred EEEEE--CCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhCCceEEEEcCC
Confidence 44443 355555555 34556777777888888888887764 455555666654 344443
Done!