BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025475
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 12 NYGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVK 69
Y + YW+ RY + +DW+ +S+ R + + R+L++GCGN+ +S ++
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFL 62
Query: 70 DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129
G+ ++ ++D SSV + M+ Y +PQL++ MDVR + F SFD V++KGTLD+L+
Sbjct: 63 GGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALL 121
Query: 130 CGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
G P + S Q+L EVSR+L PGG ++ +T P R H Y W +
Sbjct: 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLR 180
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP 96
S + PF +Y+ + VL VGCG+ + + + GY+ V +DIS V I K + E P
Sbjct: 41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK-AVGVDISEVXIQKGKERGEG-P 98
Query: 97 QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156
L +++ D+ + FE+E F+A+ +L+ T P+ A L E+ R+LK G Y
Sbjct: 99 DLSFIKGDLSSLP-FENEQFEAIXAINSLEW----TEEPLRA---LNEIKRVLKSDG-YA 149
Query: 157 LITYGDPKAR 166
I P A+
Sbjct: 150 CIAILGPTAK 159
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 45/194 (23%)
Query: 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL 98
L P + Y+ +L +GCG+ +S ++ GY + IDI+S AI + + P L
Sbjct: 20 LYPIIHNYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARS-PGL 77
Query: 99 KY-----LQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP 151
+ V + S F D SFD + + + + P S+++ EV R+LKP
Sbjct: 78 NQKTGGKAEFKVENASSLSFHDSSFDFAV----MQAFLTSVPDPKERSRIIKEVFRVLKP 133
Query: 152 GGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSMKSYLEPVPITDD 211
G L+ +G NW ++LY K YL PIT +
Sbjct: 134 GAYLYLVEFGQ-------------NWHLKLY----------------RKRYLHDFPITKE 164
Query: 212 GQLPAEFVLEDPDS 225
F+ DP++
Sbjct: 165 ---EGSFLARDPET 175
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 28 GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDM 87
S ++ R L P + KY +VL + CG S + G+E +V +DIS I
Sbjct: 17 NSQEYRSRIETLEPLLXKYXKKRGKVLDLACGVGGFSFLLEDYGFE-VVGVDISEDXIRK 75
Query: 88 MK--MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEV 145
+ K E ++++ D R +S FED++FD VI +DS++ P+ +Q+ EV
Sbjct: 76 AREYAKSRE-SNVEFIVGDARKLS-FEDKTFDYVI---FIDSIVHF--EPLELNQVFKEV 128
Query: 146 SRLLKPGGIYM 156
R+LKP G ++
Sbjct: 129 RRVLKPSGKFI 139
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMS 109
RVL + CG + + ++ + GYE +V +D+ + + + K +E ++++LQ DV +++
Sbjct: 43 RRVLDLACGTGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA 101
Query: 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156
F FDAV ++M + ++ +V+ LKPGG+++
Sbjct: 102 F--KNEFDAVT--MFFSTIMYFDEEDL--RKLFSKVAEALKPGGVFI 142
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 24 VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSV 83
V +G D+++ + L VR++ P ++ +L V CG + + D + + +++S+
Sbjct: 25 VHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA-DSFGTVEGLELSA- 82
Query: 84 AIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
DM+ + P D+RD S F AV
Sbjct: 83 --DMLAIARRRNPDAVLHHGDMRDFSL--GRRFSAVT 115
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 24 VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSV 83
V +G D+++ + L VR++ P ++ +L V CG + + D + + +++S+
Sbjct: 25 VHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA-DSFGTVEGLELSA- 82
Query: 84 AIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
DM+ + P D+RD S F AV
Sbjct: 83 --DMLAIARRRNPDAVLHHGDMRDFSL--GRRFSAVT 115
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 24 VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSV 83
V +G D+++ + L VR++ P ++ +L V CG + + D + + +++S+
Sbjct: 25 VHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA-DSFGTVEGLELSA- 82
Query: 84 AIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
DM+ + P D+RD S F AV
Sbjct: 83 --DMLAIARRRNPDAVLHHGDMRDFSL--GRRFSAVT 115
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD 107
P +++L GCG + + K G+ D++ D+ + ID K ++ P+ +++ D+
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAK---QDFPEARWVVGDL-S 99
Query: 108 MSFFEDESFDAVIDKGTLDSLMC 130
+ + FD ++ G + +
Sbjct: 100 VDQISETDFDLIVSAGNVXGFLA 122
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 35 RYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94
R + L F+ + +P +++L +GCG +E + G++ +A + +
Sbjct: 30 RSATLTKFLGE-LPAGAKILELGCGAGYQAEAXLAAGFDVDATDGSPELAAEASRRLGRP 88
Query: 95 IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISA-SQMLGEVSRLLKPGG 153
+ + Q+D D ++DAV + C + P + +L + R LKPGG
Sbjct: 89 VRTXLFHQLDAID-------AYDAVW------AHACLLHVPRDELADVLKLIWRALKPGG 135
Query: 154 I-YMLITYGDPKARMIHLKWKVYNWKIELYIIAR 186
+ Y G+ + R ++ YN+ E ++ AR
Sbjct: 136 LFYASYKSGEGEGRDKLARY--YNYPSEEWLRAR 167
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 53 VLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMK 89
VL VGCG ++S K G + ++ +D+SS+ I+M K
Sbjct: 42 VLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAK 77
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAI-DMMKMK-YEEIPQLKYLQMDVRDM 108
+ L +GCGN S + +GY D+ D ++++I ++ ++K E + L +D+ ++
Sbjct: 34 GKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL 92
Query: 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162
+F D +D ++ L L T ++ + R KPGG +++ D
Sbjct: 93 TF--DRQYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAAMD 139
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQ 97
RVL V CG + S +V++G+ ++++D S M+K +E I +
Sbjct: 59 RVLDVACGTGVDSIMLVEEGFS-VMSVDASD---KMLKYALKERWNRRKEPSFDNWVIEE 114
Query: 98 LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGI-- 154
+L +D +S + FDAVI G + + S ++ L ++ +++PGG+
Sbjct: 115 ANWLTLDKDVLS---GDGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRPGGLLV 171
Query: 155 -------YMLITYGDPKARMIHLK 171
Y+L T P + I+ K
Sbjct: 172 IDHRNYDYILSTGCAPPGKNIYYK 195
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 31/144 (21%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQ 97
RVL V CG + S +V++G+ + ++D S M+K +E I +
Sbjct: 59 RVLDVACGTGVDSIMLVEEGFS-VTSVDASD---KMLKYALKERWNRRKEPAFDKWVIEE 114
Query: 98 LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGI-- 154
+L +D +D+ + FDAVI G + + + S ++ L ++ +++PGG+
Sbjct: 115 ANWLTLD-KDVP--AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171
Query: 155 -------YMLITYGDPKARMIHLK 171
Y+L T P + I+ K
Sbjct: 172 IDHRNYDYILSTGCAPPGKNIYYK 195
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 31/144 (21%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQ 97
RVL V CG + S +V++G+ + ++D S M+K +E I +
Sbjct: 60 RVLDVACGTGVDSIMLVEEGFS-VTSVDASD---KMLKYALKERWNRRKEPAFDKWVIEE 115
Query: 98 LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGI-- 154
+L +D +D+ + FDAVI G + + + S ++ L ++ +++PGG+
Sbjct: 116 ANWLTLD-KDVP--AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
Query: 155 -------YMLITYGDPKARMIHLK 171
Y+L T P + I+ K
Sbjct: 173 IDHRNYDYILSTGCAPPGKNIYYK 196
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 31/144 (21%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQ 97
RVL V CG + S +V++G+ + ++D S M+K +E I +
Sbjct: 59 RVLDVACGTGVDSIMLVEEGFS-VTSVDASD---KMLKYALKERWNRRKEPAFDKWVIEE 114
Query: 98 LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGI-- 154
+L +D +D+ + FDAVI G + + + S ++ L ++ +++PGG+
Sbjct: 115 ANWLTLD-KDVP--AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171
Query: 155 -------YMLITYGDPKARMIHLK 171
Y+L T P + I+ K
Sbjct: 172 IDHKNYDYILSTGCAPPGKNIYYK 195
>pdb|3PS9|A Chain A, Crystal Structure Of Mnmc From E. Coli
Length = 676
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159
D+ +++ D+S + +D LD N + + ++RL +PGG T
Sbjct: 164 DINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 219
>pdb|3AWI|A Chain A, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|B Chain B, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|C Chain C, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|D Chain D, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|E Chain E, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|F Chain F, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
Length = 688
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159
D+ +++ D+S + +D LD N + + ++RL +PGG T
Sbjct: 176 DINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 231
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
++ E I QL LQ S ++ SFD + L L+ G+ + ++++L E++R+
Sbjct: 45 RVSVENIKQL--LQ------SAHKESSFDII-----LSGLVPGSTT-LHSAEILAEIARI 90
Query: 149 LKPGGIYML 157
L+PGG L
Sbjct: 91 LRPGGCLFL 99
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
++ E I QL LQ S ++ SFD + L L+ G+ + ++++L E++R+
Sbjct: 48 RVSVENIKQL--LQ------SAHKESSFDII-----LSGLVPGSTT-LHSAEILAEIARI 93
Query: 149 LKPGGIYML 157
L+PGG L
Sbjct: 94 LRPGGCLFL 102
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAI-DMMKMK-YEEIPQLKYLQMDVRDMS 109
+ L +GCGN S + +GY D+ D ++++I ++ ++K E + L +D+ +++
Sbjct: 36 KTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT 94
Query: 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162
F D +D ++ L L T ++ + R KPGG +++ D
Sbjct: 95 F--DGEYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAAMD 140
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-Cn
Length = 202
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI 95
+ RV+ +GCG + + ++KD +E I +D+S ++++ + + + +
Sbjct: 19 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL 66
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91
W + + F+ +Y+ RVL +G G S + + G+E +V +D S +++ + K
Sbjct: 37 WKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE-VVLVDPSKEXLEVAREK 95
Query: 92 YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP 151
+ ++ D+ F +F+AV+ G + S + + S E+ R+L P
Sbjct: 96 GVK----NVVEAKAEDLP-FPSGAFEAVLALGDVLSYVENKDKAFS------EIRRVLVP 144
Query: 152 GGIYM 156
G+ +
Sbjct: 145 DGLLI 149
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-C
Length = 217
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI 95
+ RV+ +GCG + + ++KD +E I +D+S ++++ + + + +
Sbjct: 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL 76
>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
Clostridium Difficile 630
Length = 385
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 66 DMVKDGYEDIVN--------IDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE-SF 116
D+ KD + I N DI +ID+ + E +Y++ +V D + F+ E F
Sbjct: 243 DVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEF 302
Query: 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK---ARMIHLKWK 173
+I + ++ + LG R LK Y++ +Y D + + K K
Sbjct: 303 GFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEYEFGQKADKKRK 362
Query: 174 VYNWKIELYIIARPGFEKP 192
+YN ++ PG + P
Sbjct: 363 LYNGXLKTNFFQYPGPKPP 381
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 30 FDWYQRYSALRPFV----RKYIP---TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISS 82
F + +++ R V R+YIP RVL +GCG E ++G E I +DI+
Sbjct: 15 FLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESI-GVDINE 73
Query: 83 VAIDMMKMKY 92
I + K+
Sbjct: 74 DMIKFCEGKF 83
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 67 MVKDGYEDIVNIDISSVAIDMMK-MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125
V+DGY+ I+IS + + + E +L + D+R + F +DES V GT+
Sbjct: 42 FVEDGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPF-KDESXSFVYSYGTI 99
Query: 126 DSLMCGTNAPISASQMLGEVSRLLKPGGI 154
N + + E+ R+LKPGG+
Sbjct: 100 --FHXRKN---DVKEAIDEIKRVLKPGGL 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,388,844
Number of Sequences: 62578
Number of extensions: 363264
Number of successful extensions: 879
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 29
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)