Query 025475
Match_columns 252
No_of_seqs 189 out of 3067
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01209 Ubie_methyltran: ubiE 99.9 7.7E-23 1.7E-27 165.4 9.0 167 47-225 45-218 (233)
2 COG2226 UbiE Methylase involve 99.9 4E-21 8.7E-26 154.0 13.6 109 49-165 51-162 (238)
3 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.4E-21 3.1E-26 160.2 2.1 183 41-236 48-245 (247)
4 TIGR03840 TMPT_Se_Te thiopurin 99.8 3E-19 6.5E-24 142.6 15.2 139 17-161 1-154 (213)
5 COG2227 UbiG 2-polyprenyl-3-me 99.8 8.8E-20 1.9E-24 144.0 9.8 133 21-162 25-164 (243)
6 PRK13255 thiopurine S-methyltr 99.8 9.7E-19 2.1E-23 140.2 15.1 139 15-159 2-155 (218)
7 PF08241 Methyltransf_11: Meth 99.8 4.5E-19 9.7E-24 123.6 11.1 95 54-157 1-95 (95)
8 PLN02233 ubiquinone biosynthes 99.8 1.9E-18 4.1E-23 142.7 13.3 110 47-164 71-187 (261)
9 KOG1271 Methyltransferases [Ge 99.8 2.6E-18 5.7E-23 129.1 11.5 186 8-196 10-216 (227)
10 PF12847 Methyltransf_18: Meth 99.8 7.7E-18 1.7E-22 121.3 12.6 105 49-159 1-111 (112)
11 PRK11036 putative S-adenosyl-L 99.8 3.9E-18 8.4E-23 140.6 11.4 115 41-163 36-153 (255)
12 PTZ00098 phosphoethanolamine N 99.8 1.2E-17 2.7E-22 137.9 14.2 118 39-162 41-159 (263)
13 PRK11207 tellurite resistance 99.8 8.9E-18 1.9E-22 133.1 12.4 128 15-159 5-134 (197)
14 PRK13256 thiopurine S-methyltr 99.8 3.6E-17 7.9E-22 130.7 15.5 142 14-161 7-165 (226)
15 KOG1540 Ubiquinone biosynthesi 99.8 1.7E-18 3.7E-23 136.8 7.5 163 49-224 100-278 (296)
16 PLN02396 hexaprenyldihydroxybe 99.7 7.5E-18 1.6E-22 142.1 11.0 106 49-163 131-239 (322)
17 TIGR03587 Pse_Me-ase pseudamin 99.7 2.8E-17 6.1E-22 130.6 13.4 106 46-163 40-146 (204)
18 PLN02244 tocopherol O-methyltr 99.7 2.5E-17 5.4E-22 141.0 12.6 106 48-161 117-225 (340)
19 PF05401 NodS: Nodulation prot 99.7 4.2E-17 9.1E-22 125.5 11.6 138 14-161 4-148 (201)
20 PF13847 Methyltransf_31: Meth 99.7 4.2E-17 9.1E-22 124.1 11.6 105 49-161 3-112 (152)
21 PF05724 TPMT: Thiopurine S-me 99.7 2.7E-17 5.8E-22 131.6 10.6 138 16-159 3-155 (218)
22 PF03848 TehB: Tellurite resis 99.7 5.5E-17 1.2E-21 126.2 11.6 129 15-160 5-134 (192)
23 TIGR00477 tehB tellurite resis 99.7 1E-16 2.2E-21 126.8 12.0 104 49-160 30-134 (195)
24 PRK10258 biotin biosynthesis p 99.7 2E-16 4.3E-21 130.2 13.8 110 41-162 32-143 (251)
25 TIGR02752 MenG_heptapren 2-hep 99.7 3E-16 6.4E-21 127.6 13.8 109 48-164 44-156 (231)
26 KOG1270 Methyltransferases [Co 99.7 3.2E-17 6.9E-22 130.4 7.5 101 50-162 90-198 (282)
27 PF13649 Methyltransf_25: Meth 99.7 5.7E-17 1.2E-21 114.7 7.9 95 53-153 1-101 (101)
28 TIGR00740 methyltransferase, p 99.7 4E-16 8.6E-21 127.5 13.6 168 46-227 50-227 (239)
29 PRK05785 hypothetical protein; 99.7 2.8E-16 6E-21 127.0 12.4 109 40-164 42-150 (226)
30 PRK14103 trans-aconitate 2-met 99.7 2.3E-16 5E-21 130.1 11.6 100 48-161 28-128 (255)
31 PF13489 Methyltransf_23: Meth 99.7 2.6E-16 5.5E-21 120.5 11.0 104 43-163 16-119 (161)
32 PRK12335 tellurite resistance 99.7 7.5E-16 1.6E-20 129.1 13.6 102 50-159 121-223 (287)
33 COG2230 Cfa Cyclopropane fatty 99.7 2.8E-16 6.2E-21 128.3 10.2 109 47-164 70-181 (283)
34 PRK15068 tRNA mo(5)U34 methylt 99.7 6.6E-16 1.4E-20 131.0 11.6 103 49-160 122-227 (322)
35 PLN02336 phosphoethanolamine N 99.7 9.2E-16 2E-20 137.4 13.1 106 48-161 265-371 (475)
36 smart00138 MeTrc Methyltransfe 99.7 8.1E-16 1.8E-20 127.0 11.5 105 49-159 99-242 (264)
37 TIGR00452 methyltransferase, p 99.7 9.1E-16 2E-20 128.9 11.7 104 48-160 120-226 (314)
38 TIGR02072 BioC biotin biosynth 99.7 2.1E-15 4.5E-20 122.9 13.4 104 49-162 34-138 (240)
39 PRK01683 trans-aconitate 2-met 99.7 1.3E-15 2.9E-20 125.8 12.2 100 48-159 30-130 (258)
40 PRK00107 gidB 16S rRNA methylt 99.7 4.4E-15 9.6E-20 116.1 14.4 114 44-170 40-156 (187)
41 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.1E-15 2.4E-20 129.4 11.3 107 48-163 112-219 (340)
42 KOG4300 Predicted methyltransf 99.6 4.7E-16 1E-20 119.4 8.0 105 52-163 79-186 (252)
43 PF02353 CMAS: Mycolic acid cy 99.6 1.2E-15 2.6E-20 126.2 11.0 108 47-164 60-171 (273)
44 PRK11873 arsM arsenite S-adeno 99.6 1.9E-15 4.1E-20 125.8 12.0 107 47-161 75-185 (272)
45 TIGR00138 gidB 16S rRNA methyl 99.6 5.3E-15 1.2E-19 115.4 12.5 108 50-170 43-153 (181)
46 PF07021 MetW: Methionine bios 99.6 5.2E-15 1.1E-19 113.8 11.9 113 40-167 4-117 (193)
47 PF08242 Methyltransf_12: Meth 99.6 6.4E-17 1.4E-21 114.0 0.7 95 54-155 1-99 (99)
48 PRK06922 hypothetical protein; 99.6 8.4E-15 1.8E-19 131.6 12.9 113 49-161 418-539 (677)
49 PRK08317 hypothetical protein; 99.6 1.5E-14 3.3E-19 117.8 12.8 106 47-160 17-125 (241)
50 PRK11705 cyclopropane fatty ac 99.6 1.3E-14 2.9E-19 125.7 12.7 107 47-163 165-271 (383)
51 COG4106 Tam Trans-aconitate me 99.6 6.2E-15 1.3E-19 114.1 9.3 111 39-161 19-131 (257)
52 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.2E-14 4.8E-19 115.7 13.0 108 49-164 39-148 (223)
53 smart00828 PKS_MT Methyltransf 99.6 1.2E-14 2.6E-19 117.6 11.1 101 52-161 2-106 (224)
54 PF05175 MTS: Methyltransferas 99.6 2.7E-14 5.8E-19 110.6 12.3 117 39-161 23-142 (170)
55 PLN02336 phosphoethanolamine N 99.6 2.2E-14 4.8E-19 128.5 12.8 106 49-161 37-144 (475)
56 PRK00216 ubiE ubiquinone/menaq 99.6 2.9E-14 6.3E-19 116.2 12.4 108 49-164 51-163 (239)
57 PRK14967 putative methyltransf 99.6 4.1E-14 8.8E-19 114.4 12.8 112 47-160 34-160 (223)
58 KOG2361 Predicted methyltransf 99.6 2.3E-14 4.9E-19 112.8 10.4 150 14-170 34-194 (264)
59 PRK06202 hypothetical protein; 99.6 4.6E-14 1E-18 114.8 12.1 107 48-163 59-170 (232)
60 PF08003 Methyltransf_9: Prote 99.5 2.5E-14 5.5E-19 117.1 9.2 104 49-161 115-221 (315)
61 TIGR02469 CbiT precorrin-6Y C5 99.5 1.2E-13 2.5E-18 101.1 12.0 102 48-159 18-122 (124)
62 TIGR00537 hemK_rel_arch HemK-r 99.5 7.8E-14 1.7E-18 109.0 11.5 110 49-162 19-143 (179)
63 PF05891 Methyltransf_PK: AdoM 99.5 3.2E-14 6.9E-19 111.5 9.1 141 15-161 9-163 (218)
64 KOG2352 Predicted spermine/spe 99.5 9.9E-14 2.2E-18 119.7 13.0 163 7-170 4-174 (482)
65 PF13659 Methyltransf_26: Meth 99.5 3.6E-14 7.8E-19 102.9 8.4 111 50-160 1-116 (117)
66 PRK15001 SAM-dependent 23S rib 99.5 1.7E-13 3.7E-18 117.8 13.4 117 40-160 217-341 (378)
67 TIGR02021 BchM-ChlM magnesium 99.5 1.9E-13 4.1E-18 110.2 12.7 100 48-157 54-156 (219)
68 TIGR00406 prmA ribosomal prote 99.5 2E-13 4.3E-18 114.4 13.0 108 41-161 151-261 (288)
69 PRK08287 cobalt-precorrin-6Y C 99.5 2.6E-13 5.6E-18 106.7 12.9 101 47-160 29-132 (187)
70 COG4123 Predicted O-methyltran 99.5 3.8E-13 8.2E-18 108.2 13.4 111 49-159 44-170 (248)
71 PRK00121 trmB tRNA (guanine-N( 99.5 9.1E-14 2E-18 110.6 9.8 113 49-161 40-158 (202)
72 COG2264 PrmA Ribosomal protein 99.5 1.4E-13 3E-18 113.6 10.9 110 40-162 153-266 (300)
73 PLN03075 nicotianamine synthas 99.5 2.3E-13 4.9E-18 112.6 11.8 104 49-159 123-233 (296)
74 PRK11088 rrmA 23S rRNA methylt 99.5 3.7E-13 7.9E-18 112.0 13.1 104 41-162 76-184 (272)
75 PLN02232 ubiquinone biosynthes 99.5 6.3E-15 1.4E-19 112.9 1.8 139 76-228 1-148 (160)
76 TIGR02716 C20_methyl_CrtF C-20 99.5 3.4E-13 7.4E-18 114.1 12.2 105 48-161 148-256 (306)
77 TIGR01983 UbiG ubiquinone bios 99.5 3.8E-13 8.3E-18 108.7 11.9 106 49-162 45-152 (224)
78 PRK14966 unknown domain/N5-glu 99.5 3.5E-13 7.5E-18 116.2 12.1 121 39-159 241-381 (423)
79 TIGR02081 metW methionine bios 99.5 3.3E-13 7.2E-18 106.8 11.2 98 42-151 6-104 (194)
80 PRK05134 bifunctional 3-demeth 99.5 3.5E-13 7.6E-18 109.7 10.9 106 49-162 48-154 (233)
81 PRK09489 rsmC 16S ribosomal RN 99.5 1.1E-12 2.5E-17 111.9 14.3 107 50-161 197-305 (342)
82 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.1E-13 4.6E-18 107.8 9.0 112 49-162 16-135 (194)
83 TIGR03438 probable methyltrans 99.5 5.5E-13 1.2E-17 112.4 12.0 114 41-159 55-177 (301)
84 PRK13944 protein-L-isoaspartat 99.5 8.7E-13 1.9E-17 105.2 12.3 98 48-159 71-173 (205)
85 PRK04266 fibrillarin; Provisio 99.5 1.3E-12 2.8E-17 105.3 13.0 103 47-158 70-175 (226)
86 TIGR03534 RF_mod_PrmC protein- 99.5 7.4E-13 1.6E-17 108.8 11.7 109 49-159 87-217 (251)
87 PRK07580 Mg-protoporphyrin IX 99.5 9.9E-13 2.1E-17 106.7 12.2 97 48-154 62-161 (230)
88 PRK00517 prmA ribosomal protei 99.5 8.7E-13 1.9E-17 108.4 12.0 106 41-162 111-216 (250)
89 PF06325 PrmA: Ribosomal prote 99.5 5.2E-13 1.1E-17 111.1 10.6 110 40-162 152-262 (295)
90 PRK13942 protein-L-isoaspartat 99.5 8.5E-13 1.8E-17 105.8 11.3 99 47-159 74-176 (212)
91 PRK00377 cbiT cobalt-precorrin 99.5 1.1E-12 2.3E-17 104.1 11.8 103 47-159 38-145 (198)
92 PLN02585 magnesium protoporphy 99.4 1.2E-12 2.6E-17 110.3 12.5 97 49-156 144-247 (315)
93 TIGR00080 pimt protein-L-isoas 99.4 1E-12 2.2E-17 105.7 11.1 99 47-159 75-177 (215)
94 PRK11188 rrmJ 23S rRNA methylt 99.4 1.8E-12 3.8E-17 103.6 12.2 107 47-164 49-170 (209)
95 PRK00312 pcm protein-L-isoaspa 99.4 3.9E-12 8.4E-17 102.0 13.1 99 47-160 76-176 (212)
96 TIGR01177 conserved hypothetic 99.4 3.8E-12 8.2E-17 108.7 13.2 114 47-162 180-297 (329)
97 PRK09328 N5-glutamine S-adenos 99.4 4.8E-12 1E-16 105.5 13.0 110 48-159 107-238 (275)
98 cd02440 AdoMet_MTases S-adenos 99.4 5.9E-12 1.3E-16 88.2 11.2 100 52-158 1-103 (107)
99 TIGR03533 L3_gln_methyl protei 99.4 7.5E-12 1.6E-16 104.6 13.3 109 49-159 121-251 (284)
100 PHA03411 putative methyltransf 99.4 1.6E-11 3.4E-16 100.3 14.6 150 9-163 23-187 (279)
101 TIGR00536 hemK_fam HemK family 99.4 1.3E-11 2.9E-16 103.3 14.6 110 51-162 116-247 (284)
102 PRK14121 tRNA (guanine-N(7)-)- 99.4 3.7E-12 8E-17 109.2 11.3 108 49-161 122-237 (390)
103 PRK07402 precorrin-6B methylas 99.4 7.1E-12 1.5E-16 99.3 12.1 114 38-162 27-145 (196)
104 COG2242 CobL Precorrin-6B meth 99.4 4.1E-11 8.8E-16 91.8 15.6 113 38-162 21-138 (187)
105 KOG1541 Predicted protein carb 99.4 7.9E-12 1.7E-16 97.3 11.7 113 50-166 51-167 (270)
106 PRK00811 spermidine synthase; 99.4 5E-12 1.1E-16 105.6 11.5 109 48-159 75-191 (283)
107 KOG3010 Methyltransferase [Gen 99.4 2.9E-12 6.2E-17 101.1 9.2 100 52-161 36-139 (261)
108 TIGR03704 PrmC_rel_meth putati 99.4 9.7E-12 2.1E-16 102.1 12.5 110 50-160 87-217 (251)
109 PRK14968 putative methyltransf 99.4 1.1E-11 2.3E-16 97.4 12.2 110 48-160 22-149 (188)
110 COG2813 RsmC 16S RNA G1207 met 99.4 3.1E-11 6.8E-16 99.2 15.2 120 40-164 147-271 (300)
111 PF03291 Pox_MCEL: mRNA cappin 99.4 4.9E-12 1.1E-16 107.3 10.9 111 49-162 62-189 (331)
112 PHA03412 putative methyltransf 99.3 2.2E-11 4.7E-16 97.3 12.8 141 9-154 5-158 (241)
113 PRK11805 N5-glutamine S-adenos 99.3 2.5E-11 5.4E-16 102.4 13.7 107 51-159 135-263 (307)
114 PTZ00146 fibrillarin; Provisio 99.3 2.5E-11 5.5E-16 100.2 13.2 121 29-158 107-236 (293)
115 PRK14903 16S rRNA methyltransf 99.3 3E-11 6.6E-16 106.5 13.7 116 47-162 235-369 (431)
116 PRK01544 bifunctional N5-gluta 99.3 1.4E-11 3.1E-16 110.6 11.3 107 50-158 139-268 (506)
117 smart00650 rADc Ribosomal RNA 99.3 3.8E-11 8.2E-16 92.9 11.9 102 48-159 12-113 (169)
118 TIGR00446 nop2p NOL1/NOP2/sun 99.3 4.8E-11 1E-15 98.8 13.1 115 47-162 69-202 (264)
119 PRK11783 rlmL 23S rRNA m(2)G24 99.3 5.8E-11 1.3E-15 110.7 15.0 125 37-162 527-659 (702)
120 PRK10901 16S rRNA methyltransf 99.3 6.6E-11 1.4E-15 104.5 14.4 115 47-161 242-374 (427)
121 TIGR00438 rrmJ cell division p 99.3 2.2E-11 4.7E-16 95.9 9.6 106 47-161 30-148 (188)
122 PF00891 Methyltransf_2: O-met 99.3 3.1E-11 6.7E-16 98.7 10.9 100 48-161 99-201 (241)
123 PRK04457 spermidine synthase; 99.3 2.8E-11 6.1E-16 99.9 10.3 113 48-163 65-181 (262)
124 PRK15128 23S rRNA m(5)C1962 me 99.3 3.4E-11 7.4E-16 104.7 10.9 117 39-161 211-341 (396)
125 COG2518 Pcm Protein-L-isoaspar 99.3 8.6E-11 1.9E-15 92.0 11.5 109 37-160 59-170 (209)
126 PRK14904 16S rRNA methyltransf 99.3 9.8E-11 2.1E-15 104.0 13.4 113 48-162 249-380 (445)
127 PF05148 Methyltransf_8: Hypot 99.3 1.3E-10 2.7E-15 90.5 11.9 101 39-164 63-163 (219)
128 PRK01581 speE spermidine synth 99.2 8.2E-11 1.8E-15 99.7 11.5 111 47-159 148-268 (374)
129 PF01135 PCMT: Protein-L-isoas 99.2 5.3E-11 1.2E-15 94.6 9.6 100 47-160 70-173 (209)
130 PRK13943 protein-L-isoaspartat 99.2 8E-11 1.7E-15 99.5 11.1 99 47-159 78-180 (322)
131 PRK14901 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 101.6 13.6 114 48-161 251-386 (434)
132 PF01739 CheR: CheR methyltran 99.2 1.8E-10 3.9E-15 90.6 11.7 105 49-159 31-175 (196)
133 PRK14902 16S rRNA methyltransf 99.2 2E-10 4.4E-15 102.0 13.0 114 48-161 249-381 (444)
134 PRK10611 chemotaxis methyltran 99.2 1.7E-10 3.7E-15 95.8 11.4 105 50-159 116-262 (287)
135 COG2890 HemK Methylase of poly 99.2 1.7E-10 3.6E-15 96.1 11.2 106 52-160 113-239 (280)
136 TIGR00563 rsmB ribosomal RNA s 99.2 3.7E-10 8E-15 99.8 14.1 115 48-162 237-371 (426)
137 COG1092 Predicted SAM-dependen 99.2 7.6E-11 1.6E-15 101.4 9.4 127 36-163 205-340 (393)
138 TIGR00417 speE spermidine synt 99.2 1.4E-10 3E-15 96.4 10.6 107 48-159 71-186 (270)
139 KOG1975 mRNA cap methyltransfe 99.2 7.4E-11 1.6E-15 96.8 8.7 117 42-161 110-239 (389)
140 PLN02366 spermidine synthase 99.2 2.1E-10 4.6E-15 96.5 11.7 110 47-159 89-206 (308)
141 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.9E-10 4.1E-15 90.9 10.4 104 49-160 53-160 (199)
142 COG4976 Predicted methyltransf 99.2 1.3E-11 2.8E-16 96.7 3.2 111 39-160 114-226 (287)
143 PLN02781 Probable caffeoyl-CoA 99.2 3.2E-10 7E-15 92.1 10.8 101 48-158 67-177 (234)
144 PF05219 DREV: DREV methyltran 99.2 2.2E-10 4.8E-15 92.1 9.3 94 50-159 95-188 (265)
145 KOG3191 Predicted N6-DNA-methy 99.2 1E-09 2.2E-14 83.1 12.3 168 16-189 12-198 (209)
146 KOG3045 Predicted RNA methylas 99.1 1.7E-10 3.6E-15 92.0 7.8 90 48-163 179-268 (325)
147 PF06080 DUF938: Protein of un 99.1 6.3E-10 1.4E-14 87.0 10.6 120 36-160 11-142 (204)
148 COG2263 Predicted RNA methylas 99.1 2.5E-10 5.3E-15 87.3 8.0 76 49-128 45-121 (198)
149 PRK03612 spermidine synthase; 99.1 3.3E-10 7.2E-15 102.3 10.1 110 48-159 296-415 (521)
150 COG2519 GCD14 tRNA(1-methylade 99.1 7.8E-10 1.7E-14 88.6 10.6 104 47-164 92-200 (256)
151 COG3963 Phospholipid N-methylt 99.1 6.6E-09 1.4E-13 77.7 13.2 119 35-161 32-158 (194)
152 COG2521 Predicted archaeal met 99.1 1.9E-10 4E-15 90.4 5.2 107 47-157 132-243 (287)
153 KOG2899 Predicted methyltransf 99.1 1E-09 2.2E-14 86.8 9.3 112 43-157 52-207 (288)
154 COG1352 CheR Methylase of chem 99.1 1.8E-09 3.9E-14 88.6 10.7 104 50-159 97-241 (268)
155 PF02390 Methyltransf_4: Putat 99.1 1.2E-09 2.7E-14 86.1 9.4 103 52-161 20-135 (195)
156 KOG1499 Protein arginine N-met 99.1 6.6E-10 1.4E-14 92.7 8.2 103 48-156 59-164 (346)
157 PLN02672 methionine S-methyltr 99.0 2E-09 4.3E-14 103.0 11.8 119 50-168 119-287 (1082)
158 PRK03522 rumB 23S rRNA methylu 99.0 1.9E-09 4.1E-14 91.6 10.2 100 49-159 173-274 (315)
159 PRK13168 rumA 23S rRNA m(5)U19 99.0 3.2E-09 6.9E-14 94.3 11.6 109 48-170 296-409 (443)
160 COG1041 Predicted DNA modifica 99.0 6.4E-09 1.4E-13 87.3 12.5 125 37-163 183-314 (347)
161 PF10672 Methyltrans_SAM: S-ad 99.0 1.4E-09 3.1E-14 90.1 8.5 129 33-163 108-242 (286)
162 PLN02823 spermine synthase 99.0 4.2E-09 9.1E-14 89.6 11.5 111 48-159 102-220 (336)
163 COG4122 Predicted O-methyltran 99.0 2.8E-09 6.2E-14 84.6 9.3 102 48-159 58-166 (219)
164 PRK14896 ksgA 16S ribosomal RN 99.0 4.6E-09 1E-13 86.7 10.5 76 47-126 27-102 (258)
165 PF03602 Cons_hypoth95: Conser 99.0 1.3E-09 2.9E-14 85.0 6.9 104 49-159 42-153 (183)
166 PF01596 Methyltransf_3: O-met 99.0 3.2E-09 6.9E-14 84.3 9.0 101 49-159 45-155 (205)
167 PLN02476 O-methyltransferase 99.0 5.2E-09 1.1E-13 86.4 10.3 100 48-157 117-226 (278)
168 PF10294 Methyltransf_16: Puta 99.0 3.8E-09 8.2E-14 81.9 8.8 107 48-162 44-159 (173)
169 TIGR00095 RNA methyltransferas 99.0 6.3E-09 1.4E-13 81.8 9.9 103 49-159 49-159 (189)
170 KOG2940 Predicted methyltransf 99.0 9.9E-10 2.1E-14 86.2 5.1 105 49-161 72-176 (325)
171 TIGR02085 meth_trns_rumB 23S r 98.9 6E-09 1.3E-13 90.5 10.4 109 49-170 233-343 (374)
172 KOG3178 Hydroxyindole-O-methyl 98.9 9.9E-09 2.1E-13 85.9 10.2 103 50-164 178-280 (342)
173 PRK00274 ksgA 16S ribosomal RN 98.9 6.7E-09 1.4E-13 86.4 9.3 76 48-126 41-116 (272)
174 PF08704 GCD14: tRNA methyltra 98.9 1E-08 2.2E-13 83.4 9.4 105 47-163 38-150 (247)
175 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 1.2E-08 2.5E-13 83.2 9.5 145 13-160 16-200 (256)
176 PF02475 Met_10: Met-10+ like- 98.9 6.9E-09 1.5E-13 81.8 7.8 103 40-155 92-198 (200)
177 COG0220 Predicted S-adenosylme 98.9 1E-08 2.2E-13 82.4 8.8 103 51-160 50-165 (227)
178 TIGR00755 ksgA dimethyladenosi 98.9 4.1E-08 8.9E-13 80.9 12.5 75 48-126 28-105 (253)
179 KOG2904 Predicted methyltransf 98.9 3.6E-08 7.7E-13 79.5 11.5 113 49-161 148-287 (328)
180 PF05185 PRMT5: PRMT5 arginine 98.9 1E-08 2.2E-13 90.5 9.2 111 39-156 170-294 (448)
181 PRK04148 hypothetical protein; 98.8 6E-08 1.3E-12 71.1 11.0 106 39-162 4-112 (134)
182 PRK11933 yebU rRNA (cytosine-C 98.8 5.8E-08 1.3E-12 86.2 12.9 115 47-161 111-244 (470)
183 COG0421 SpeE Spermidine syntha 98.8 2.8E-08 6.1E-13 82.3 9.9 105 51-158 78-189 (282)
184 TIGR00478 tly hemolysin TlyA f 98.8 2.3E-08 5.1E-13 80.5 9.1 101 39-158 63-170 (228)
185 PLN02589 caffeoyl-CoA O-methyl 98.8 3.2E-08 6.9E-13 80.7 9.8 99 49-157 79-188 (247)
186 PTZ00338 dimethyladenosine tra 98.8 2.3E-08 5.1E-13 83.7 9.2 78 47-128 34-114 (294)
187 PF01170 UPF0020: Putative RNA 98.8 3.1E-08 6.8E-13 77.2 8.8 110 47-159 26-150 (179)
188 TIGR00479 rumA 23S rRNA (uraci 98.8 3.6E-08 7.7E-13 87.5 10.3 110 48-170 291-405 (431)
189 PRK11727 23S rRNA mA1618 methy 98.8 7.1E-08 1.5E-12 81.5 11.3 80 49-128 114-202 (321)
190 PF01564 Spermine_synth: Sperm 98.8 5E-08 1.1E-12 79.8 9.1 110 47-159 74-191 (246)
191 KOG3420 Predicted RNA methylas 98.7 1.3E-08 2.8E-13 74.3 4.8 77 49-126 48-125 (185)
192 PRK00536 speE spermidine synth 98.7 5.1E-08 1.1E-12 79.9 8.7 96 47-159 70-171 (262)
193 KOG1661 Protein-L-isoaspartate 98.7 6.3E-08 1.4E-12 75.2 8.4 110 36-159 69-193 (237)
194 COG0742 N6-adenine-specific me 98.7 8.9E-08 1.9E-12 73.9 9.2 105 49-159 43-154 (187)
195 PF12147 Methyltransf_20: Puta 98.7 2.7E-07 5.8E-12 75.5 12.0 106 49-159 135-249 (311)
196 COG0030 KsgA Dimethyladenosine 98.7 1.4E-07 3.1E-12 76.8 9.6 95 31-127 11-107 (259)
197 PRK04338 N(2),N(2)-dimethylgua 98.7 8E-08 1.7E-12 83.4 8.7 98 50-159 58-158 (382)
198 KOG1500 Protein arginine N-met 98.7 1.5E-07 3.2E-12 78.1 9.6 101 49-157 177-280 (517)
199 COG2520 Predicted methyltransf 98.7 2.1E-07 4.6E-12 78.7 10.7 112 40-163 179-293 (341)
200 TIGR03439 methyl_EasF probable 98.6 7E-07 1.5E-11 75.5 12.9 114 41-159 68-197 (319)
201 PF09243 Rsm22: Mitochondrial 98.6 3.3E-07 7.3E-12 76.2 10.8 108 49-165 33-145 (274)
202 PF11968 DUF3321: Putative met 98.6 1.4E-07 3.1E-12 74.1 7.7 131 11-160 7-150 (219)
203 PRK01544 bifunctional N5-gluta 98.6 2.1E-07 4.6E-12 83.8 9.2 106 49-161 347-464 (506)
204 KOG0820 Ribosomal RNA adenine 98.6 2.7E-07 5.8E-12 74.5 8.5 76 47-126 56-134 (315)
205 TIGR02143 trmA_only tRNA (urac 98.6 2.8E-07 6.1E-12 79.4 9.3 105 51-170 199-320 (353)
206 PF03141 Methyltransf_29: Puta 98.6 3E-08 6.6E-13 86.5 2.8 96 52-160 120-220 (506)
207 PRK05031 tRNA (uracil-5-)-meth 98.6 3.5E-07 7.5E-12 79.2 9.2 108 39-159 195-320 (362)
208 PF07942 N2227: N2227-like pro 98.6 8.1E-07 1.7E-11 73.0 10.7 111 38-156 39-199 (270)
209 KOG1269 SAM-dependent methyltr 98.5 1.3E-07 2.8E-12 81.1 5.8 112 42-161 103-217 (364)
210 TIGR00308 TRM1 tRNA(guanine-26 98.5 3E-07 6.6E-12 79.4 7.5 98 51-159 46-147 (374)
211 PF01728 FtsJ: FtsJ-like methy 98.5 2.6E-07 5.7E-12 72.1 6.0 107 50-165 24-145 (181)
212 KOG1331 Predicted methyltransf 98.5 2.3E-07 5E-12 75.5 5.1 113 37-162 34-146 (293)
213 PF02527 GidB: rRNA small subu 98.4 1.3E-06 2.8E-11 68.1 8.6 100 47-159 45-148 (184)
214 PRK00050 16S rRNA m(4)C1402 me 98.4 7E-07 1.5E-11 74.6 7.0 77 48-124 18-99 (296)
215 COG0144 Sun tRNA and rRNA cyto 98.4 7.4E-06 1.6E-10 70.6 13.1 114 48-161 155-290 (355)
216 PF02384 N6_Mtase: N-6 DNA Met 98.4 3E-06 6.5E-11 71.9 10.2 128 33-160 28-184 (311)
217 COG0293 FtsJ 23S rRNA methylas 98.4 3.4E-06 7.5E-11 66.2 9.1 106 47-165 43-165 (205)
218 KOG1663 O-methyltransferase [S 98.3 1E-05 2.2E-10 64.1 11.4 100 49-158 73-182 (237)
219 PF04672 Methyltransf_19: S-ad 98.3 3.4E-06 7.4E-11 68.9 9.1 107 52-162 71-193 (267)
220 COG3897 Predicted methyltransf 98.3 3.6E-06 7.8E-11 64.9 8.4 115 39-164 67-184 (218)
221 COG4076 Predicted RNA methylas 98.3 1.5E-06 3.2E-11 66.5 6.2 98 51-157 34-133 (252)
222 PF09445 Methyltransf_15: RNA 98.3 7.3E-07 1.6E-11 67.8 4.4 74 52-126 2-80 (163)
223 PF00398 RrnaAD: Ribosomal RNA 98.3 6.2E-06 1.3E-10 68.3 10.3 76 48-125 29-107 (262)
224 PRK11783 rlmL 23S rRNA m(2)G24 98.3 7.6E-06 1.7E-10 76.8 12.1 112 48-162 189-350 (702)
225 PF01269 Fibrillarin: Fibrilla 98.3 1.8E-05 4E-10 62.6 12.1 121 30-159 49-178 (229)
226 COG0500 SmtA SAM-dependent met 98.3 1.5E-05 3.3E-10 59.7 11.6 101 53-163 52-159 (257)
227 COG2265 TrmA SAM-dependent met 98.3 3.7E-06 8E-11 74.0 9.0 116 41-170 283-405 (432)
228 TIGR02987 met_A_Alw26 type II 98.3 6.9E-06 1.5E-10 74.7 10.2 78 50-127 32-124 (524)
229 COG1189 Predicted rRNA methyla 98.2 7.7E-06 1.7E-10 65.2 8.9 107 39-158 67-177 (245)
230 COG4798 Predicted methyltransf 98.2 4.1E-06 8.9E-11 64.5 7.0 181 47-235 46-238 (238)
231 KOG3987 Uncharacterized conser 98.2 2.5E-07 5.3E-12 71.8 0.3 95 49-159 112-207 (288)
232 COG0357 GidB Predicted S-adeno 98.2 5.7E-06 1.2E-10 65.8 7.7 97 50-159 68-168 (215)
233 PF08123 DOT1: Histone methyla 98.2 6.8E-06 1.5E-10 65.2 7.7 102 47-157 40-156 (205)
234 COG0116 Predicted N6-adenine-s 98.2 2.1E-05 4.6E-10 67.3 11.0 112 48-160 190-345 (381)
235 PF04816 DUF633: Family of unk 98.2 3.1E-05 6.8E-10 61.4 11.3 108 53-170 1-112 (205)
236 PRK11760 putative 23S rRNA C24 98.2 1E-05 2.2E-10 68.3 8.8 88 47-152 209-296 (357)
237 COG4262 Predicted spermidine s 98.1 2E-05 4.4E-10 66.4 9.6 107 47-159 287-407 (508)
238 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 1.4E-05 3E-10 66.9 8.2 115 47-161 83-221 (283)
239 KOG1709 Guanidinoacetate methy 98.1 6.1E-05 1.3E-09 59.1 10.5 105 48-159 100-206 (271)
240 PF05958 tRNA_U5-meth_tr: tRNA 98.0 1.5E-05 3.2E-10 68.9 7.4 85 39-124 185-287 (352)
241 COG1889 NOP1 Fibrillarin-like 98.0 0.00014 3.1E-09 56.5 11.8 122 29-159 51-180 (231)
242 PF13679 Methyltransf_32: Meth 97.8 8.9E-05 1.9E-09 55.4 7.6 75 48-124 24-108 (141)
243 PF07091 FmrO: Ribosomal RNA m 97.8 0.00016 3.4E-09 58.5 9.0 114 38-160 94-209 (251)
244 KOG4589 Cell division protein 97.8 0.00067 1.5E-08 52.2 11.4 109 47-164 67-189 (232)
245 KOG2915 tRNA(1-methyladenosine 97.8 0.00029 6.3E-09 57.3 9.6 101 47-159 103-210 (314)
246 PF03059 NAS: Nicotianamine sy 97.7 0.00022 4.9E-09 58.9 9.1 103 50-159 121-230 (276)
247 COG2384 Predicted SAM-dependen 97.7 0.00081 1.7E-08 53.2 11.6 127 40-178 7-137 (226)
248 COG4627 Uncharacterized protei 97.7 2.1E-05 4.5E-10 58.4 2.6 57 98-160 31-87 (185)
249 PRK10742 putative methyltransf 97.7 0.00012 2.5E-09 59.4 6.7 80 48-128 85-177 (250)
250 TIGR01444 fkbM_fam methyltrans 97.7 0.00018 3.8E-09 53.7 6.7 57 52-108 1-60 (143)
251 KOG2798 Putative trehalase [Ca 97.7 0.00028 6E-09 58.5 8.2 115 36-158 131-295 (369)
252 KOG1122 tRNA and rRNA cytosine 97.6 0.00039 8.4E-09 59.9 8.7 113 48-161 240-373 (460)
253 KOG2187 tRNA uracil-5-methyltr 97.6 0.0001 2.2E-09 64.9 4.9 69 39-108 371-443 (534)
254 KOG2730 Methylase [General fun 97.6 7.2E-05 1.6E-09 58.9 3.4 97 49-153 94-196 (263)
255 KOG3201 Uncharacterized conser 97.5 0.0002 4.4E-09 53.7 5.5 115 49-170 29-151 (201)
256 PF13578 Methyltransf_24: Meth 97.5 4.6E-05 1E-09 53.9 1.9 97 54-159 1-105 (106)
257 COG5459 Predicted rRNA methyla 97.4 0.00044 9.5E-09 58.2 6.7 110 50-165 114-231 (484)
258 PF06962 rRNA_methylase: Putat 97.4 0.00093 2E-08 49.4 7.1 86 74-161 1-94 (140)
259 PF11599 AviRa: RRNA methyltra 97.3 0.004 8.7E-08 49.1 10.4 109 51-159 53-214 (246)
260 PF05971 Methyltransf_10: Prot 97.3 0.0012 2.7E-08 55.1 7.7 78 50-128 103-190 (299)
261 TIGR00006 S-adenosyl-methyltra 97.3 0.0014 3E-08 55.1 8.0 78 48-125 19-102 (305)
262 KOG3115 Methyltransferase-like 97.2 0.0011 2.5E-08 51.6 6.6 111 49-159 60-183 (249)
263 KOG1596 Fibrillarin and relate 97.1 0.0024 5.2E-08 51.2 7.3 101 46-159 153-261 (317)
264 COG0286 HsdM Type I restrictio 97.1 0.013 2.8E-07 52.9 12.8 127 34-160 169-327 (489)
265 cd00315 Cyt_C5_DNA_methylase C 97.1 0.0022 4.8E-08 53.5 7.4 73 52-128 2-75 (275)
266 KOG2198 tRNA cytosine-5-methyl 97.0 0.0064 1.4E-07 51.8 9.4 119 43-161 149-298 (375)
267 PF03141 Methyltransf_29: Puta 97.0 0.0013 2.8E-08 58.1 5.1 117 52-182 368-489 (506)
268 KOG4058 Uncharacterized conser 96.9 0.0095 2.1E-07 44.2 8.4 106 49-167 72-180 (199)
269 PHA01634 hypothetical protein 96.9 0.0058 1.3E-07 44.1 7.1 46 49-94 28-73 (156)
270 KOG1562 Spermidine synthase [A 96.8 0.0027 5.9E-08 52.4 5.7 111 44-159 116-236 (337)
271 PF01861 DUF43: Protein of unk 96.8 0.024 5.2E-07 45.8 10.9 103 49-159 44-149 (243)
272 PF04989 CmcI: Cephalosporin h 96.8 0.0056 1.2E-07 48.4 6.7 102 50-159 33-147 (206)
273 PF03269 DUF268: Caenorhabditi 96.7 0.0011 2.5E-08 49.7 2.6 108 50-163 2-115 (177)
274 COG1064 AdhP Zn-dependent alco 96.7 0.014 3.1E-07 49.7 9.3 98 45-161 162-261 (339)
275 KOG2793 Putative N2,N2-dimethy 96.6 0.017 3.8E-07 47.0 8.9 105 50-162 87-202 (248)
276 KOG0822 Protein kinase inhibit 96.5 0.005 1.1E-07 54.7 5.5 115 38-158 351-477 (649)
277 PF01555 N6_N4_Mtase: DNA meth 96.4 0.0093 2E-07 47.8 6.3 51 39-90 181-231 (231)
278 KOG0024 Sorbitol dehydrogenase 96.3 0.024 5.1E-07 47.7 8.1 106 47-165 167-279 (354)
279 KOG1501 Arginine N-methyltrans 96.3 0.0068 1.5E-07 52.7 5.1 71 52-122 69-142 (636)
280 PRK11524 putative methyltransf 96.3 0.015 3.3E-07 48.7 7.1 53 40-93 199-251 (284)
281 PF03492 Methyltransf_7: SAM d 96.3 0.04 8.7E-07 47.3 9.7 116 48-164 15-188 (334)
282 PF02005 TRM: N2,N2-dimethylgu 96.3 0.014 3E-07 50.9 6.8 101 49-160 49-155 (377)
283 KOG1099 SAM-dependent methyltr 96.3 0.013 2.7E-07 46.8 6.0 106 49-164 41-168 (294)
284 KOG2920 Predicted methyltransf 96.2 0.0018 3.9E-08 53.2 1.0 105 48-159 115-234 (282)
285 PF04445 SAM_MT: Putative SAM- 96.1 0.0079 1.7E-07 48.5 4.2 76 51-127 77-163 (234)
286 COG3129 Predicted SAM-dependen 96.1 0.0092 2E-07 47.6 4.2 89 38-127 63-165 (292)
287 PRK13699 putative methylase; P 95.9 0.034 7.5E-07 45.0 7.1 54 40-94 154-207 (227)
288 KOG1227 Putative methyltransfe 95.9 0.0052 1.1E-07 50.9 2.1 73 48-122 193-269 (351)
289 PLN02668 indole-3-acetate carb 95.8 0.057 1.2E-06 47.0 8.5 54 111-164 158-242 (386)
290 PRK09424 pntA NAD(P) transhydr 95.8 0.12 2.7E-06 46.7 10.8 99 49-160 164-286 (509)
291 COG1063 Tdh Threonine dehydrog 95.7 0.032 7E-07 48.2 6.7 99 49-164 168-274 (350)
292 PRK09880 L-idonate 5-dehydroge 95.6 0.069 1.5E-06 45.8 8.4 95 48-160 168-267 (343)
293 PF01795 Methyltransf_5: MraW 95.6 0.041 8.8E-07 46.4 6.6 77 48-124 19-102 (310)
294 PF11312 DUF3115: Protein of u 95.6 0.038 8.3E-07 46.3 6.4 107 51-159 88-242 (315)
295 COG0275 Predicted S-adenosylme 95.6 0.084 1.8E-06 44.1 8.2 76 48-123 22-104 (314)
296 PF06859 Bin3: Bicoid-interact 95.6 0.0079 1.7E-07 42.3 1.9 41 115-158 1-43 (110)
297 PF00145 DNA_methylase: C-5 cy 95.4 0.025 5.5E-07 48.0 4.8 71 52-128 2-74 (335)
298 cd08283 FDH_like_1 Glutathione 95.2 0.09 1.9E-06 46.0 7.8 107 47-160 182-307 (386)
299 TIGR00675 dcm DNA-methyltransf 95.1 0.048 1E-06 46.5 5.6 72 53-128 1-72 (315)
300 PRK11524 putative methyltransf 95.1 0.038 8.2E-07 46.4 4.9 63 97-159 8-80 (284)
301 KOG2671 Putative RNA methylase 94.8 0.025 5.5E-07 47.8 3.0 79 47-126 206-295 (421)
302 KOG2078 tRNA modification enzy 94.8 0.029 6.3E-07 48.7 3.3 76 32-108 232-311 (495)
303 COG1867 TRM1 N2,N2-dimethylgua 94.6 0.13 2.8E-06 44.1 6.8 99 50-159 53-154 (380)
304 COG4301 Uncharacterized conser 94.6 0.59 1.3E-05 38.0 10.0 105 49-158 78-192 (321)
305 PRK10458 DNA cytosine methylas 94.5 0.2 4.4E-06 44.9 8.2 79 50-128 88-182 (467)
306 TIGR00027 mthyl_TIGR00027 meth 94.5 0.6 1.3E-05 38.6 10.5 112 42-160 73-198 (260)
307 COG3510 CmcI Cephalosporin hyd 94.5 0.16 3.5E-06 39.5 6.4 101 49-159 69-180 (237)
308 PTZ00357 methyltransferase; Pr 94.4 0.24 5.2E-06 46.0 8.3 97 52-154 703-830 (1072)
309 COG1255 Uncharacterized protei 94.4 0.89 1.9E-05 32.3 9.3 98 40-161 5-104 (129)
310 COG0270 Dcm Site-specific DNA 94.3 0.17 3.7E-06 43.3 7.0 76 50-128 3-80 (328)
311 COG2933 Predicted SAM-dependen 94.2 0.2 4.3E-06 41.1 6.6 73 45-124 207-279 (358)
312 KOG2539 Mitochondrial/chloropl 94.2 0.33 7.1E-06 43.0 8.4 108 51-162 202-318 (491)
313 PF10354 DUF2431: Domain of un 94.0 0.9 2E-05 34.8 9.8 107 55-163 2-129 (166)
314 PRK13699 putative methylase; P 94.0 0.085 1.8E-06 42.7 4.3 60 99-158 3-71 (227)
315 PF07757 AdoMet_MTase: Predict 94.0 0.057 1.2E-06 37.9 2.8 31 49-80 58-88 (112)
316 PF11899 DUF3419: Protein of u 94.0 0.11 2.5E-06 45.3 5.3 63 96-163 275-338 (380)
317 PF10237 N6-adenineMlase: Prob 93.9 1.1 2.4E-05 34.2 10.0 108 38-160 14-124 (162)
318 PF02636 Methyltransf_28: Puta 93.9 0.35 7.6E-06 39.7 7.8 44 51-94 20-72 (252)
319 PF02737 3HCDH_N: 3-hydroxyacy 93.8 1.8 4E-05 33.5 11.4 104 52-170 1-125 (180)
320 COG1565 Uncharacterized conser 93.7 0.32 6.9E-06 41.7 7.3 46 49-94 77-131 (370)
321 cd08237 ribitol-5-phosphate_DH 93.4 0.63 1.4E-05 39.9 8.9 94 47-160 161-257 (341)
322 PF05711 TylF: Macrocin-O-meth 93.3 1.3 2.7E-05 36.4 10.0 117 39-164 62-217 (248)
323 TIGR01202 bchC 2-desacetyl-2-h 93.1 0.91 2E-05 38.3 9.4 88 48-160 143-232 (308)
324 KOG1253 tRNA methyltransferase 92.8 0.14 3.1E-06 45.5 4.0 101 48-159 108-216 (525)
325 PF00107 ADH_zinc_N: Zinc-bind 92.7 0.46 1E-05 34.3 6.2 87 59-162 1-92 (130)
326 cd08230 glucose_DH Glucose deh 92.5 0.7 1.5E-05 39.8 8.0 92 48-160 171-270 (355)
327 PRK05786 fabG 3-ketoacyl-(acyl 92.4 1.6 3.4E-05 35.0 9.6 74 50-124 5-90 (238)
328 PF03686 UPF0146: Uncharacteri 92.1 0.6 1.3E-05 33.9 5.9 101 39-163 4-106 (127)
329 cd08281 liver_ADH_like1 Zinc-d 92.1 0.89 1.9E-05 39.5 8.2 97 47-160 189-291 (371)
330 cd08254 hydroxyacyl_CoA_DH 6-h 91.9 1.8 3.8E-05 36.7 9.8 96 47-160 163-264 (338)
331 TIGR03451 mycoS_dep_FDH mycoth 91.9 1.2 2.5E-05 38.5 8.7 97 47-160 174-277 (358)
332 TIGR02822 adh_fam_2 zinc-bindi 91.8 3.6 7.9E-05 35.0 11.5 92 46-160 162-255 (329)
333 KOG2651 rRNA adenine N-6-methy 91.6 0.59 1.3E-05 40.4 6.2 43 49-91 153-195 (476)
334 TIGR03366 HpnZ_proposed putati 91.5 0.64 1.4E-05 38.7 6.5 94 48-160 119-219 (280)
335 PRK05872 short chain dehydroge 91.3 2.8 6E-05 35.1 10.2 75 50-125 9-95 (296)
336 COG1568 Predicted methyltransf 91.2 1.5 3.3E-05 36.4 7.8 113 49-170 152-271 (354)
337 PRK07533 enoyl-(acyl carrier p 91.1 3.7 8.1E-05 33.5 10.6 109 50-159 10-148 (258)
338 TIGR00561 pntA NAD(P) transhyd 91.0 0.93 2E-05 41.2 7.2 98 49-159 163-284 (511)
339 COG1062 AdhC Zn-dependent alco 90.9 1.8 4E-05 37.0 8.4 102 46-164 182-290 (366)
340 PF05206 TRM13: Methyltransfer 90.9 1.9 4.1E-05 35.6 8.4 117 38-160 5-141 (259)
341 KOG1201 Hydroxysteroid 17-beta 90.5 1.9 4.1E-05 36.2 8.0 77 49-126 37-125 (300)
342 PRK01747 mnmC bifunctional tRN 90.3 0.68 1.5E-05 43.7 6.1 104 50-159 58-206 (662)
343 PF02254 TrkA_N: TrkA-N domain 89.6 5 0.00011 28.2 8.9 89 58-161 4-98 (116)
344 PLN02740 Alcohol dehydrogenase 89.6 2.3 5E-05 37.1 8.5 98 46-160 195-301 (381)
345 KOG2352 Predicted spermine/spe 89.6 0.58 1.3E-05 41.7 4.6 115 48-162 294-419 (482)
346 COG0686 Ald Alanine dehydrogen 89.4 1.1 2.5E-05 37.7 5.9 99 51-159 169-268 (371)
347 PRK05808 3-hydroxybutyryl-CoA 89.4 8 0.00017 32.2 11.3 99 52-165 5-124 (282)
348 PRK07819 3-hydroxybutyryl-CoA 89.1 8.1 0.00017 32.4 11.0 104 52-169 7-131 (286)
349 PRK07417 arogenate dehydrogena 89.0 3.5 7.6E-05 34.4 8.8 84 52-155 2-87 (279)
350 COG0287 TyrA Prephenate dehydr 88.9 2.5 5.4E-05 35.4 7.7 89 51-156 4-95 (279)
351 KOG3924 Putative protein methy 88.8 2 4.4E-05 37.3 7.2 106 47-160 190-309 (419)
352 PRK06035 3-hydroxyacyl-CoA deh 88.8 9.6 0.00021 31.9 11.4 91 51-156 4-118 (291)
353 PRK08265 short chain dehydroge 88.7 4.8 0.0001 32.9 9.4 72 50-124 6-89 (261)
354 PF03721 UDPG_MGDP_dh_N: UDP-g 88.6 1.4 3E-05 34.4 5.8 108 52-165 2-126 (185)
355 TIGR00497 hsdM type I restrict 88.5 7.6 0.00016 35.4 11.2 127 33-159 197-355 (501)
356 PLN02827 Alcohol dehydrogenase 88.4 2.3 5E-05 37.1 7.6 97 46-159 190-295 (378)
357 PRK05708 2-dehydropantoate 2-r 88.3 8.4 0.00018 32.6 10.7 98 51-161 3-106 (305)
358 COG1748 LYS9 Saccharopine dehy 88.2 2.6 5.7E-05 36.9 7.7 72 51-124 2-77 (389)
359 cd08232 idonate-5-DH L-idonate 88.2 2.6 5.7E-05 35.8 7.8 93 49-159 165-262 (339)
360 KOG0821 Predicted ribosomal RN 88.2 0.67 1.5E-05 37.0 3.6 58 50-107 51-109 (326)
361 PF02153 PDH: Prephenate dehyd 88.0 2.9 6.4E-05 34.4 7.7 77 64-159 2-79 (258)
362 PRK10309 galactitol-1-phosphat 88.0 3.7 8E-05 35.1 8.6 97 47-160 158-261 (347)
363 PRK08267 short chain dehydroge 88.0 7.1 0.00015 31.7 10.0 72 52-125 3-87 (260)
364 cd00401 AdoHcyase S-adenosyl-L 87.6 3.2 6.9E-05 36.8 7.9 89 48-161 200-291 (413)
365 COG3315 O-Methyltransferase in 87.6 3.9 8.5E-05 34.5 8.2 114 40-159 82-209 (297)
366 cd08239 THR_DH_like L-threonin 87.5 6.8 0.00015 33.3 9.9 97 47-160 161-263 (339)
367 PRK08324 short chain dehydroge 87.5 3.9 8.6E-05 38.8 9.1 75 49-124 421-507 (681)
368 TIGR02437 FadB fatty oxidation 86.8 8 0.00017 37.0 10.7 107 52-169 315-438 (714)
369 PRK11730 fadB multifunctional 86.8 7.7 0.00017 37.1 10.6 103 52-169 315-438 (715)
370 PF04072 LCM: Leucine carboxyl 86.5 4.6 0.0001 31.3 7.6 89 51-145 80-182 (183)
371 cd05188 MDR Medium chain reduc 86.5 6.7 0.00015 31.6 9.0 94 48-160 133-233 (271)
372 PRK09260 3-hydroxybutyryl-CoA 86.1 15 0.00032 30.8 11.0 95 52-159 3-117 (288)
373 cd08285 NADP_ADH NADP(H)-depen 86.1 6.5 0.00014 33.6 9.1 96 47-159 164-266 (351)
374 COG1179 Dinucleotide-utilizing 86.0 4.5 9.8E-05 32.9 7.2 90 50-148 30-145 (263)
375 PRK06701 short chain dehydroge 85.9 6.7 0.00015 32.7 8.8 109 50-159 46-181 (290)
376 PRK07984 enoyl-(acyl carrier p 85.6 18 0.00038 29.7 11.1 75 50-125 6-94 (262)
377 PRK07576 short chain dehydroge 85.3 7.5 0.00016 31.8 8.7 73 50-123 9-94 (264)
378 PRK07530 3-hydroxybutyryl-CoA 85.1 12 0.00027 31.2 10.1 91 51-156 5-116 (292)
379 TIGR02441 fa_ox_alpha_mit fatt 85.1 7.4 0.00016 37.3 9.5 103 52-169 337-460 (737)
380 TIGR02818 adh_III_F_hyde S-(hy 85.1 4.4 9.6E-05 35.1 7.6 98 46-160 182-288 (368)
381 PRK12939 short chain dehydroge 84.9 8.4 0.00018 30.9 8.8 74 50-124 7-93 (250)
382 PRK07502 cyclohexadienyl dehyd 84.9 8.1 0.00018 32.6 8.9 89 51-157 7-98 (307)
383 PLN02545 3-hydroxybutyryl-CoA 84.8 17 0.00037 30.5 10.8 92 51-156 5-116 (295)
384 PRK07806 short chain dehydroge 84.2 11 0.00023 30.3 9.1 109 50-159 6-134 (248)
385 PRK11154 fadJ multifunctional 84.0 12 0.00026 35.7 10.5 104 51-169 310-435 (708)
386 PF02086 MethyltransfD12: D12 83.7 1.9 4.2E-05 35.2 4.5 56 36-92 5-62 (260)
387 cd08300 alcohol_DH_class_III c 83.3 9.3 0.0002 33.1 8.8 97 47-160 184-289 (368)
388 cd08245 CAD Cinnamyl alcohol d 83.3 17 0.00036 30.7 10.3 96 46-159 159-256 (330)
389 cd05278 FDH_like Formaldehyde 83.3 12 0.00026 31.8 9.4 97 46-159 164-267 (347)
390 COG0569 TrkA K+ transport syst 83.2 5.5 0.00012 32.1 6.9 67 52-122 2-73 (225)
391 PRK03659 glutathione-regulated 83.0 12 0.00026 35.1 9.8 95 51-161 401-500 (601)
392 PRK06522 2-dehydropantoate 2-r 82.2 18 0.00039 30.2 10.0 97 52-161 2-102 (304)
393 TIGR02819 fdhA_non_GSH formald 82.2 14 0.00031 32.4 9.6 110 47-160 183-300 (393)
394 PLN03154 putative allyl alcoho 82.0 5.3 0.00011 34.4 6.8 96 47-159 156-258 (348)
395 TIGR02825 B4_12hDH leukotriene 82.0 21 0.00045 30.1 10.3 95 47-159 136-237 (325)
396 PRK08415 enoyl-(acyl carrier p 81.9 25 0.00055 29.0 10.6 75 50-125 5-93 (274)
397 PRK06130 3-hydroxybutyryl-CoA 81.9 19 0.00041 30.4 10.0 40 51-91 5-46 (311)
398 PRK06505 enoyl-(acyl carrier p 81.8 19 0.00042 29.6 9.8 75 50-125 7-95 (271)
399 PRK07066 3-hydroxybutyryl-CoA 81.8 21 0.00046 30.5 10.1 91 51-155 8-115 (321)
400 PRK08293 3-hydroxybutyryl-CoA 81.4 17 0.00037 30.3 9.4 92 52-157 5-118 (287)
401 PRK06079 enoyl-(acyl carrier p 81.4 20 0.00043 29.1 9.7 73 50-125 7-93 (252)
402 cd08277 liver_alcohol_DH_like 81.2 5.6 0.00012 34.4 6.7 97 47-160 182-287 (365)
403 cd08255 2-desacetyl-2-hydroxye 81.0 18 0.00039 29.5 9.4 95 46-159 94-190 (277)
404 cd08301 alcohol_DH_plants Plan 80.8 7.7 0.00017 33.5 7.4 98 46-160 184-290 (369)
405 PRK06139 short chain dehydroge 80.6 9.3 0.0002 32.7 7.7 75 50-125 7-94 (330)
406 COG0863 DNA modification methy 80.6 6.9 0.00015 32.7 6.9 54 40-94 213-266 (302)
407 PRK07774 short chain dehydroge 80.4 18 0.00038 29.1 9.0 75 50-125 6-93 (250)
408 cd08238 sorbose_phosphate_red 80.4 24 0.00053 31.0 10.5 99 47-158 173-287 (410)
409 PRK11064 wecC UDP-N-acetyl-D-m 80.3 8.4 0.00018 34.2 7.5 106 51-163 4-123 (415)
410 COG4017 Uncharacterized protei 80.2 4.1 8.8E-05 32.0 4.7 69 48-128 43-112 (254)
411 PLN02586 probable cinnamyl alc 80.2 9 0.00019 33.1 7.6 96 47-160 181-279 (360)
412 cd08234 threonine_DH_like L-th 80.1 18 0.00038 30.5 9.3 97 47-160 157-258 (334)
413 cd08294 leukotriene_B4_DH_like 80.1 18 0.00038 30.4 9.3 95 47-159 141-241 (329)
414 PRK08340 glucose-1-dehydrogena 80.0 8.7 0.00019 31.2 7.1 72 52-124 2-85 (259)
415 cd08293 PTGR2 Prostaglandin re 79.9 17 0.00036 30.9 9.1 96 47-159 150-254 (345)
416 PF03514 GRAS: GRAS domain fam 79.9 13 0.00028 32.5 8.5 107 49-156 110-241 (374)
417 cd08233 butanediol_DH_like (2R 79.4 16 0.00034 31.3 8.8 97 47-160 170-273 (351)
418 PRK03562 glutathione-regulated 79.3 29 0.00063 32.7 11.0 65 51-121 401-470 (621)
419 PLN02896 cinnamyl-alcohol dehy 79.3 19 0.00042 30.8 9.4 77 47-125 7-89 (353)
420 PRK09072 short chain dehydroge 79.3 11 0.00025 30.6 7.6 75 50-125 5-90 (263)
421 COG0677 WecC UDP-N-acetyl-D-ma 79.2 18 0.00038 31.9 8.7 106 51-164 10-133 (436)
422 PRK15001 SAM-dependent 23S rib 79.1 30 0.00065 30.4 10.3 94 52-162 47-145 (378)
423 PF11899 DUF3419: Protein of u 79.0 5 0.00011 35.2 5.6 45 47-92 33-77 (380)
424 TIGR03201 dearomat_had 6-hydro 78.9 14 0.00031 31.6 8.4 44 47-91 164-209 (349)
425 PRK10669 putative cation:proto 78.7 19 0.00042 33.3 9.6 65 51-121 418-487 (558)
426 PF01488 Shikimate_DH: Shikima 78.7 6.7 0.00015 28.8 5.5 73 49-125 11-85 (135)
427 cd05285 sorbitol_DH Sorbitol d 78.6 22 0.00048 30.2 9.4 96 46-160 159-266 (343)
428 PRK10083 putative oxidoreducta 78.2 9.1 0.0002 32.5 7.0 99 47-160 158-260 (339)
429 PRK06500 short chain dehydroge 78.0 22 0.00049 28.4 9.0 72 50-124 6-89 (249)
430 PRK06249 2-dehydropantoate 2-r 77.9 24 0.00053 29.8 9.4 98 50-161 5-108 (313)
431 PRK12921 2-dehydropantoate 2-r 77.7 27 0.00058 29.2 9.6 96 52-161 2-104 (305)
432 PRK05476 S-adenosyl-L-homocyst 77.7 11 0.00025 33.5 7.4 89 49-162 211-302 (425)
433 PLN00203 glutamyl-tRNA reducta 77.1 21 0.00046 32.7 9.2 105 50-165 266-373 (519)
434 PRK06603 enoyl-(acyl carrier p 77.0 39 0.00084 27.5 10.5 74 50-124 8-95 (260)
435 PRK08159 enoyl-(acyl carrier p 76.9 40 0.00087 27.7 10.5 75 50-125 10-98 (272)
436 PF05050 Methyltransf_21: Meth 76.9 6 0.00013 29.5 5.0 51 55-105 1-61 (167)
437 KOG1098 Putative SAM-dependent 76.9 2.4 5.3E-05 39.0 3.0 102 46-157 41-156 (780)
438 PRK09496 trkA potassium transp 76.6 16 0.00035 32.5 8.4 69 49-121 230-303 (453)
439 TIGR02440 FadJ fatty oxidation 76.5 32 0.00069 32.9 10.5 104 52-170 306-431 (699)
440 cd08278 benzyl_alcohol_DH Benz 76.3 26 0.00057 30.2 9.3 96 47-159 184-285 (365)
441 PRK08339 short chain dehydroge 76.3 14 0.00031 30.2 7.4 74 50-124 8-94 (263)
442 TIGR00936 ahcY adenosylhomocys 76.2 15 0.00033 32.5 7.8 91 48-162 193-285 (406)
443 PF04378 RsmJ: Ribosomal RNA s 76.2 11 0.00023 31.0 6.3 106 54-167 62-172 (245)
444 cd08261 Zn_ADH7 Alcohol dehydr 76.1 20 0.00043 30.3 8.5 97 46-159 156-258 (337)
445 PLN03209 translocon at the inn 76.0 23 0.0005 32.9 9.0 75 49-124 79-168 (576)
446 PRK07024 short chain dehydroge 75.9 15 0.00033 29.8 7.4 74 51-125 3-88 (257)
447 PRK07063 short chain dehydroge 75.8 14 0.0003 30.0 7.1 74 50-124 7-95 (260)
448 COG0541 Ffh Signal recognition 75.4 25 0.00055 31.3 8.7 107 49-161 99-223 (451)
449 COG0031 CysK Cysteine synthase 75.3 13 0.00028 31.4 6.7 44 40-83 159-207 (300)
450 PF03446 NAD_binding_2: NAD bi 75.1 19 0.0004 27.2 7.2 94 52-165 3-100 (163)
451 PRK12548 shikimate 5-dehydroge 74.9 16 0.00035 30.7 7.4 77 49-126 125-210 (289)
452 PRK07231 fabG 3-ketoacyl-(acyl 74.8 16 0.00036 29.2 7.3 74 50-124 5-90 (251)
453 PLN02253 xanthoxin dehydrogena 74.7 17 0.00037 29.8 7.5 74 50-124 18-103 (280)
454 PRK07889 enoyl-(acyl carrier p 74.6 45 0.00097 27.1 9.9 107 50-159 7-145 (256)
455 TIGR00518 alaDH alanine dehydr 74.6 6.1 0.00013 34.5 4.9 100 50-160 167-268 (370)
456 PRK08306 dipicolinate synthase 74.5 16 0.00036 30.7 7.3 90 49-160 151-242 (296)
457 COG0300 DltE Short-chain dehyd 74.4 41 0.00089 27.9 9.4 79 49-128 5-97 (265)
458 COG0604 Qor NADPH:quinone redu 74.0 32 0.0007 29.4 9.1 100 47-162 140-244 (326)
459 PRK05867 short chain dehydroge 73.9 15 0.00034 29.6 7.0 75 50-125 9-96 (253)
460 COG2910 Putative NADH-flavin r 73.9 18 0.00038 28.4 6.6 86 53-151 3-94 (211)
461 PRK08507 prephenate dehydrogen 73.9 22 0.00048 29.4 8.0 84 52-156 2-88 (275)
462 PF02719 Polysacc_synt_2: Poly 73.7 6.3 0.00014 33.2 4.6 71 58-128 5-90 (293)
463 PF01555 N6_N4_Mtase: DNA meth 73.4 3.2 6.8E-05 32.9 2.7 26 136-161 33-58 (231)
464 PLN02494 adenosylhomocysteinas 73.4 15 0.00032 33.2 7.0 92 49-164 253-346 (477)
465 cd08295 double_bond_reductase_ 73.3 16 0.00034 31.1 7.2 96 46-159 148-251 (338)
466 PRK06484 short chain dehydroge 73.3 37 0.0008 30.8 9.9 108 49-159 268-400 (520)
467 PLN02514 cinnamyl-alcohol dehy 73.2 22 0.00047 30.6 8.1 95 48-160 179-276 (357)
468 PRK07890 short chain dehydroge 73.2 17 0.00037 29.3 7.1 75 50-125 5-92 (258)
469 PF02558 ApbA: Ketopantoate re 73.1 31 0.00067 25.4 7.9 98 53-163 1-105 (151)
470 COG2961 ComJ Protein involved 72.8 52 0.0011 27.1 10.1 109 47-164 87-200 (279)
471 TIGR02279 PaaC-3OHAcCoADH 3-hy 72.8 71 0.0015 29.3 11.4 90 51-155 6-116 (503)
472 cd08242 MDR_like Medium chain 72.5 37 0.00081 28.4 9.2 91 47-159 153-245 (319)
473 PRK06124 gluconate 5-dehydroge 72.4 20 0.00042 29.0 7.3 75 49-124 10-97 (256)
474 PRK09291 short chain dehydroge 72.4 18 0.0004 29.1 7.1 73 51-124 3-82 (257)
475 PRK05650 short chain dehydroge 72.4 12 0.00025 30.7 6.0 73 52-125 2-87 (270)
476 PRK05693 short chain dehydroge 72.3 38 0.00082 27.7 9.0 68 52-125 3-82 (274)
477 PRK15057 UDP-glucose 6-dehydro 72.3 62 0.0013 28.5 10.6 108 52-164 2-122 (388)
478 PF06460 NSP13: Coronavirus NS 72.2 28 0.00061 28.8 7.7 129 38-179 47-190 (299)
479 TIGR03026 NDP-sugDHase nucleot 72.2 42 0.00091 29.7 9.7 106 52-163 2-124 (411)
480 PRK07326 short chain dehydroge 72.1 22 0.00048 28.2 7.4 72 50-123 6-90 (237)
481 TIGR02354 thiF_fam2 thiamine b 72.0 45 0.00097 26.3 8.9 93 50-151 21-137 (200)
482 PRK06997 enoyl-(acyl carrier p 71.9 52 0.0011 26.8 9.7 75 50-125 6-94 (260)
483 cd08236 sugar_DH NAD(P)-depend 71.8 36 0.00079 28.8 9.1 96 47-159 157-258 (343)
484 COG5379 BtaA S-adenosylmethion 71.7 10 0.00022 31.9 5.2 46 47-93 61-106 (414)
485 PRK12829 short chain dehydroge 71.6 22 0.00047 28.8 7.4 74 49-124 10-95 (264)
486 PRK06196 oxidoreductase; Provi 71.6 13 0.00029 31.3 6.2 73 49-125 25-109 (315)
487 cd08231 MDR_TM0436_like Hypoth 71.1 43 0.00092 28.7 9.4 94 49-159 177-280 (361)
488 PRK07985 oxidoreductase; Provi 71.1 44 0.00095 27.9 9.2 109 50-159 49-185 (294)
489 PRK07035 short chain dehydroge 70.9 20 0.00044 28.8 7.0 74 50-124 8-94 (252)
490 PF05430 Methyltransf_30: S-ad 70.9 2 4.3E-05 31.2 0.9 56 97-157 32-88 (124)
491 PRK07454 short chain dehydroge 70.7 25 0.00055 28.0 7.5 75 50-125 6-93 (241)
492 PRK06172 short chain dehydroge 70.7 22 0.00047 28.6 7.1 74 50-124 7-93 (253)
493 PLN02819 lysine-ketoglutarate 70.6 20 0.00044 35.7 7.8 109 50-161 569-704 (1042)
494 KOG1205 Predicted dehydrogenas 70.5 60 0.0013 27.3 9.6 110 49-159 11-149 (282)
495 PRK07677 short chain dehydroge 70.5 20 0.00044 28.9 6.9 73 51-124 2-87 (252)
496 PRK05854 short chain dehydroge 70.4 22 0.00048 30.0 7.4 75 50-125 14-103 (313)
497 PRK06128 oxidoreductase; Provi 70.3 49 0.0011 27.6 9.4 108 50-158 55-190 (300)
498 PLN02178 cinnamyl-alcohol dehy 70.2 17 0.00037 31.7 6.7 94 48-160 177-274 (375)
499 cd08265 Zn_ADH3 Alcohol dehydr 70.0 45 0.00097 29.0 9.3 96 46-159 200-307 (384)
500 PRK07904 short chain dehydroge 69.9 19 0.00042 29.2 6.7 77 48-124 6-96 (253)
No 1
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.88 E-value=7.7e-23 Score=165.36 Aligned_cols=167 Identities=24% Similarity=0.413 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||||.++..+++. + ..+|+++|+|+.|++.|+++.... .+++++++|+++++ +++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHH
Confidence 356779999999999999999886 3 469999999999999999998643 38999999999999 999999999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhccccccceeEEEEEecCCCCCCCCCCC--CCCc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCS--SSMK 200 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 200 (252)
+.++.+ .++.+.+++++|+|||||.+++.++..|...... ..+.++ ...++|..|.-+..... ..+.
T Consensus 124 fglrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~---~~~~~y-~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 124 FGLRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRNPLLR---ALYKFY-FKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp S-GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH---HHHHH-------------------------
T ss_pred hhHHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhh---ceeeee-ecccccccccccccccccccccc
Confidence 999999 8899999999999999999999999887653222 223333 22455554433222211 1111
Q ss_pred -ccCCCcccCCCCCCccccccCCCCc
Q 025475 201 -SYLEPVPITDDGQLPAEFVLEDPDS 225 (252)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~gf~~~~~ 225 (252)
+...-.+..+...+++++||..+..
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 2223333456666899999997763
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=4e-21 Score=154.00 Aligned_cols=109 Identities=28% Similarity=0.527 Sum_probs=100.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||||.++..+++. |.++++++|+|+.|++.++++..+. .+++++++|++++| +++.+||+|.+...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 6889999999999999999998 4679999999999999999999653 25999999999999 999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+++ .+..++|+|++|+|||||++++.++..|..
T Consensus 130 rnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 130 RNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999 899999999999999999999999887643
No 3
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.83 E-value=1.4e-21 Score=160.17 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=134.0
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~ 114 (252)
.++...++++.+|||+|||+|..+..+++. ...+++++|+|+.|++.|++++... .+++++++|+.+.+ ++
T Consensus 48 ~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~~-- 124 (247)
T PRK15451 48 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE-- 124 (247)
T ss_pred HHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-CC--
Confidence 334455677889999999999999888773 3459999999999999999998542 36899999998876 43
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh-hhhhhccccccceeEEEEEecCCCCCCCC
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHLKWKVYNWKIELYIIARPGFEKPG 193 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (252)
.+|+|+++.++||+ ++.++..++++++++|+|||.+++.+...+. ...... ....|. ......|+....
T Consensus 125 ~~D~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~--~~~~~~---~~~~~~g~s~~e 194 (247)
T PRK15451 125 NASMVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL--LFNMHH---DFKRANGYSELE 194 (247)
T ss_pred CCCEEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH--HHHHHH---HHHHHcCCCHHH
Confidence 59999999999999 6677889999999999999999998844221 111111 011111 111234555433
Q ss_pred C--CCCCCcccCCCcccCCCCCCccccccCCCCceE------EEEEEecCC
Q 025475 194 G--CSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHF------IYVCKKMND 236 (252)
Q Consensus 194 ~--~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~------~~~~~K~~~ 236 (252)
. ..+.+++...+.++.....|++++||..+.++| .++|+|++.
T Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~~ 245 (247)
T PRK15451 195 ISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 245 (247)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhheeccc
Confidence 3 123455677888899999999999999999655 477777543
No 4
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.82 E-value=3e-19 Score=142.62 Aligned_cols=139 Identities=19% Similarity=0.314 Sum_probs=108.9
Q ss_pred hhHHHHhccCCCceeeeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--
Q 025475 17 LYWNARYVQEGGSFDWYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-- 93 (252)
Q Consensus 17 ~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-- 93 (252)
++|+++|......+.-....+.+.+++... .+++.+|||+|||.|..+..++++|+ +|+|+|+|+.+++.+.....
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCC
Confidence 489999987755443333344455555542 25667999999999999999999998 89999999999998644221
Q ss_pred ------------CCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 94 ------------EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 94 ------------~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
...+++++++|+.+++....++||.|+...+++|+ +++.+...++.+.++|+|||++++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12368899999998762224679999999999999 8899999999999999999987776654
No 5
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.81 E-value=8.8e-20 Score=143.96 Aligned_cols=133 Identities=29% Similarity=0.502 Sum_probs=108.1
Q ss_pred HHhccCCCceeeeccchhhH-HHHHhhCC-----CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 21 ARYVQEGGSFDWYQRYSALR-PFVRKYIP-----TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 21 ~~y~~~~~~~~~~~~~~~l~-~~~~~~~~-----~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..|....+.+.-++....++ .++..... ++.+|||+|||.|.++..+++.|. .|+|+|+++.+|+.|+.+...
T Consensus 25 ~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e 103 (243)
T COG2227 25 SRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALE 103 (243)
T ss_pred hhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhh
Confidence 45555555565555554443 23444433 678999999999999999999995 999999999999999998765
Q ss_pred CC-CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 95 IP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 95 ~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+ .+.+.+..++++. ...++||+|+|..+++|+ +++..+++.|.+++||||.+++++.++
T Consensus 104 ~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEHv-------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 104 SGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEHV-------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccccccchhhhHHHHH-hcCCCccEEEEhhHHHcc-------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 43 5678888888876 444899999999999999 999999999999999999999999764
No 6
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.81 E-value=9.7e-19 Score=140.20 Aligned_cols=139 Identities=19% Similarity=0.330 Sum_probs=108.5
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHh-hCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRK-YIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
++++|+++|.+....+.-....+.+.+.+.. ..+++.+|||+|||.|..+..++++|. +|+|||+|+.+++.+.....
T Consensus 2 ~~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 2 DPDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENG 80 (218)
T ss_pred CHhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcC
Confidence 3679999998876544333334445555543 235667999999999999999999987 89999999999998743211
Q ss_pred --------------CCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 94 --------------EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 94 --------------~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...++++.++|+.++.....+.||.|+...+++|+ +++.+..++..+.++|+|||++++.+
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 12368899999998852233589999999999999 88999999999999999999766544
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=4.5e-19 Score=123.63 Aligned_cols=95 Identities=31% Similarity=0.571 Sum_probs=84.1
Q ss_pred EEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCC
Q 025475 54 LMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 133 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~ 133 (252)
||+|||+|..+..+++.+..+++++|+++.+++.++++... ..+.+.++|+.+++ +++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-S-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-cccccccccccccceeec-----
Confidence 89999999999999999555999999999999999999854 35669999999998 999999999999999999
Q ss_pred ChhhHHHHHHHHHHcccCCcEEEE
Q 025475 134 APISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 134 ~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+++.++++++.|+|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999975
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=1.9e-18 Score=142.66 Aligned_cols=110 Identities=22% Similarity=0.401 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc-----CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE-----EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
++++.+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++.. ...+++++++|+.+++ +++++||+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEE
Confidence 456779999999999999988876 3 3589999999999999987653 1247899999999998 888899999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++.++||+ .++..++++++|+|||||++++.++..+.
T Consensus 150 ~~~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 150 TMGYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EEecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999 78999999999999999999999987654
No 9
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.78 E-value=2.6e-18 Score=129.10 Aligned_cols=186 Identities=25% Similarity=0.431 Sum_probs=134.3
Q ss_pred CCCCCCCChhhHHHHhccCCCc--------eeeeccchh--hHHHHHhh-----CCCCC-cEEEEcccCcHhHHHHHHcC
Q 025475 8 CNTYNYGDALYWNARYVQEGGS--------FDWYQRYSA--LRPFVRKY-----IPTSS-RVLMVGCGNALMSEDMVKDG 71 (252)
Q Consensus 8 ~~~~~~~~~~~w~~~y~~~~~~--------~~~~~~~~~--l~~~~~~~-----~~~~~-~vLD~G~G~G~~~~~l~~~~ 71 (252)
-+.+..|.++|||+.|..+-.. --|+..... +..++... +.+.. +|||+|||+|.+...|++.|
T Consensus 10 l~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 10 LGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred ccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence 4556789999999998754222 236654322 23333322 34444 99999999999999999998
Q ss_pred -CCcEEEEeCCHHHHHHHHHhhcCC--C-CCeEEEccccCCCCCCCCCeeEEEeccchhhhc-CCCCChhhHHHHHHHHH
Q 025475 72 -YEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM-CGTNAPISASQMLGEVS 146 (252)
Q Consensus 72 -~~~v~~vD~s~~~i~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~~~~~~~~l~~~~ 146 (252)
....+|+|+|+.+++.|+...++. + .|++.+.|+.+.. +..++||+|+-.+++..+. ++......+.-.+..+.
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~ 168 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVE 168 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhHh
Confidence 445999999999999999887543 2 4999999999986 7888999999999999874 33333344577789999
Q ss_pred HcccCCcEEEEEEcCChhhhhhhccccccceeEEEEEecCCCCCCCCCCC
Q 025475 147 RLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCS 196 (252)
Q Consensus 147 ~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (252)
++|+|||+++|..++.-...+..... ..+ ......+|.+-|.+.+...
T Consensus 169 ~ll~~~gifvItSCN~T~dELv~~f~-~~~-f~~~~tvp~ptF~FgG~~G 216 (227)
T KOG1271|consen 169 KLLSPGGIFVITSCNFTKDELVEEFE-NFN-FEYLSTVPTPTFMFGGSVG 216 (227)
T ss_pred hccCCCcEEEEEecCccHHHHHHHHh-cCC-eEEEEeeccceEEeccccc
Confidence 99999999999998765443333311 112 2345667777788877643
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=7.7e-18 Score=121.33 Aligned_cols=105 Identities=30% Similarity=0.426 Sum_probs=87.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc---CCCCCeEEEccc-cCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE---EIPQLKYLQMDV-RDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~---~~~~v~~~~~d~-~~~~~~~~~~~D~v~~~~ 123 (252)
|+.+|||+|||+|.++..+++. ...+++++|+|+.+++.++++.. ..++++++++|+ .... ..++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECC
Confidence 4679999999999999999993 34589999999999999999982 235899999999 4443 345699999999
Q ss_pred -chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 -TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 -~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++++ .+.+++..+++++.+.|+|||++++.+
T Consensus 79 ~~~~~~----~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFL----LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGC----CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccc----cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66644 133678999999999999999999876
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.76 E-value=3.9e-18 Score=140.63 Aligned_cols=115 Identities=19% Similarity=0.340 Sum_probs=96.9
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCee
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D 117 (252)
.++....+++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ++++++++|+.++....+++||
T Consensus 36 ~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 36 RLLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred HHHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCC
Confidence 34433334566999999999999999999875 8999999999999999987543 3689999999886435567899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+|++..+++|+ .++..+++++.++|+|||.+++..++..
T Consensus 115 ~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 115 LILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred EEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99999999999 7888999999999999999998876643
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=1.2e-17 Score=137.95 Aligned_cols=118 Identities=16% Similarity=0.338 Sum_probs=99.8
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCee
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
...++... ++++.+|||+|||+|..+..++.....+|+++|+|+.+++.++++....+++.++++|+.+.+ +++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeE
Confidence 44444443 467789999999999999888775334899999999999999998765557999999998877 7788999
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+|++..+++|+ +.+++..++++++++|||||.+++.++..
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999999988 55689999999999999999999988643
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=8.9e-18 Score=133.11 Aligned_cols=128 Identities=21% Similarity=0.414 Sum_probs=99.8
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
+..||...|..... .+.+.+.+. ..++.+|||+|||+|.++..+++.|. +|+++|+|+.+++.++++.+.
T Consensus 5 ~~~~~~~~~~~~~~-------~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 5 DENYFTDKYGLTRT-------HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred hHHHHHHhcCCCCC-------hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHH
Confidence 45577776653322 223333332 23457999999999999999999875 899999999999999987743
Q ss_pred --CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 95 --IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 --~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++++.+.|+.+.+ + .++||+|+++.++||+ ++.++..+++++.++|+|||++++..
T Consensus 75 ~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 75 ENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCCCcceEEecChhhCC-c-CCCcCEEEEecchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 235888899988776 4 4579999999999998 77789999999999999999976644
No 14
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.76 E-value=3.6e-17 Score=130.66 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=115.5
Q ss_pred CChhhHHHHhccCCCceeeeccchhhHHHHHhhC-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh
Q 025475 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYI-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY 92 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~ 92 (252)
-+.++|+++|.+....|.-....+.|.+.+.... +++.+||+.|||.|..+..|+++|+ +|+|+|+|+.+++.+.+..
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHc
Confidence 3678999999998777655444455556665543 3567999999999999999999998 7999999999999986632
Q ss_pred c--------------CCCCCeEEEccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 93 E--------------EIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 93 ~--------------~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
. ...++++.++|+++++. -..++||+|+...+++++ +++.+.+.++.+.++|+|||.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcEEE
Confidence 0 12378999999999862 123589999999999999 99999999999999999999988
Q ss_pred EEEcC
Q 025475 157 LITYG 161 (252)
Q Consensus 157 i~~~~ 161 (252)
+..+.
T Consensus 161 ll~~~ 165 (226)
T PRK13256 161 LLVME 165 (226)
T ss_pred EEEEe
Confidence 87753
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.76 E-value=1.7e-18 Score=136.80 Aligned_cols=163 Identities=17% Similarity=0.273 Sum_probs=120.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C------CCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCCCCCCe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G------YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~------~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+++++||++||||..+..+.++ + ..+|+++|+|++|++.++++.... ..+.++++|++++| +++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCcc
Confidence 4569999999999999999887 2 368999999999999999988432 24899999999999 999999
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh-hhhhhccccccceeEEEEEecCCCCCCCCCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHLKWKVYNWKIELYIIARPGFEKPGGC 195 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (252)
|..++.+.+... .++.+.++++||+|||||++.+.++..-. ....++ ...| ....+|..|..+.+..
T Consensus 179 D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f---y~~y--sf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 179 DAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF---YDQY--SFDVLPVLGEIIAGDR 246 (296)
T ss_pred eeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH---HHhh--hhhhhchhhHhhhhhH
Confidence 999986555555 99999999999999999999999987655 233333 2222 2345677664444432
Q ss_pred CCC---CcccCCCcccCCCCCCccccccCCCC
Q 025475 196 SSS---MKSYLEPVPITDDGQLPAEFVLEDPD 224 (252)
Q Consensus 196 ~~~---~~~~~~~~~~~~~~~~~~~~gf~~~~ 224 (252)
.+. .+++..-.+.++...+.+++||..+.
T Consensus 247 ~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 211 12233333333555578889998775
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.75 E-value=7.5e-18 Score=142.09 Aligned_cols=106 Identities=20% Similarity=0.408 Sum_probs=93.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..++..|. +|+|+|+++++++.|+.+.... .+++++++|+.+++ +.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHH
Confidence 455899999999999999988765 8999999999999999876432 37899999998887 667899999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+|+ .++..+++++.++|||||.+++.+.+..
T Consensus 209 eHv-------~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 209 EHV-------ANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred Hhc-------CCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 999 8889999999999999999999987653
No 17
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.75 E-value=2.8e-17 Score=130.64 Aligned_cols=106 Identities=22% Similarity=0.388 Sum_probs=91.1
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++. +++.+.++|+.+ + +++++||+|+++.+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~-~~~~sfD~V~~~~v 114 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P-FKDNFFDLVLTKGV 114 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C-CCCCCEEEEEECCh
Confidence 4567779999999999999999886 4468999999999999999875 357888999888 5 77889999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++|+ ++++..++++++++++ ++++++.++..|
T Consensus 115 L~hl-----~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 115 LIHI-----NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhC-----CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9999 7788999999999997 568888886543
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.74 E-value=2.5e-17 Score=140.99 Aligned_cols=106 Identities=21% Similarity=0.348 Sum_probs=94.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++.... ++++++++|+.+.+ +++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCc
Confidence 456799999999999999999874349999999999999999876432 36899999999987 88899999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|+ .+..+++++++++|||||.+++.++.
T Consensus 196 ~~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHM-------PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999 78899999999999999999998764
No 19
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.73 E-value=4.2e-17 Score=125.52 Aligned_cols=138 Identities=21% Similarity=0.419 Sum_probs=100.9
Q ss_pred CChhhHHHHhccCCCcee----eeccchhhHHHHHhhCCCC--CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHH
Q 025475 14 GDALYWNARYVQEGGSFD----WYQRYSALRPFVRKYIPTS--SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDM 87 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~----~~~~~~~l~~~~~~~~~~~--~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~ 87 (252)
++.++|++.+.+ .++|. ||...+. ...+...++.+ .++||+|||.|.++..|+.+ ..+++++|+|+.+++.
T Consensus 4 ~~~~~l~~~la~-~DPW~~~~~~YE~~K~-~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~ 80 (201)
T PF05401_consen 4 DNYQLLNRELAN-DDPWGFETSWYERRKY-RATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALAR 80 (201)
T ss_dssp SHHHHHHHHHTS-SSGGGTTT-HHHHHHH-HHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHH
T ss_pred cHHHHHHHHhCC-CCCCCCCCCHHHHHHH-HHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHH
Confidence 456777776654 35554 4443221 12232223333 48999999999999999998 4589999999999999
Q ss_pred HHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCCh-hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 88 MKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP-ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 88 a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++++.+.++|++++.|+.+. .+.++||+|+++.+++++ .+ +++..++..+.+.|+|||.+++.++.
T Consensus 81 Ar~Rl~~~~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYYL-----~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 81 ARERLAGLPHVEWIQADVPEF--WPEGRFDLIVLSEVLYYL-----DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS-----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHhcCCCCCeEEEECcCCCC--CCCCCeeEEEEehHhHcC-----CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999888999999999776 477899999999999999 53 67899999999999999999998864
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=4.2e-17 Score=124.07 Aligned_cols=105 Identities=30% Similarity=0.576 Sum_probs=90.9
Q ss_pred CCCcEEEEcccCcHhHHHHHH-cC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVK-DG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~-~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
.+.+|||+|||+|.++..+++ .+ ..+++|+|+|+.|++.|+.+++. .++++++++|+.+++. ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 467999999999999999994 33 56899999999999999998753 3489999999999642 22 7899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++|+ .+...+++++.++|+++|.+++.++.
T Consensus 82 ~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999 88899999999999999999998876
No 21
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.73 E-value=2.7e-17 Score=131.59 Aligned_cols=138 Identities=25% Similarity=0.403 Sum_probs=109.0
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE- 93 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~- 93 (252)
.++|+++|.+....|+.....+.|.+++... .+++.+||..|||.|.....|+++|+ +|+|+|+|+.+++.+.+...
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhcc
Confidence 6899999999988888777777788887773 45566999999999999999999987 99999999999999844321
Q ss_pred -------------CCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 94 -------------EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 94 -------------~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...+|++.++|+++++....++||+|+-..+++.+ +++.+.+..+.+.++|+|||.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 82 EPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11367899999999863333589999999999988 89999999999999999999954444
No 22
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=5.5e-17 Score=126.21 Aligned_cols=129 Identities=22% Similarity=0.412 Sum_probs=97.4
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..+||.++|..... .+.+.+.+ ..+ ++.++||+|||.|+.+..|+++|+ .|+++|.|+.+++.+++....
T Consensus 5 ~~~y~~kky~~~~~-------hs~v~~a~-~~~-~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~ 74 (192)
T PF03848_consen 5 PEDYFHKKYGLTPT-------HSEVLEAV-PLL-KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEE 74 (192)
T ss_dssp STTHHHHHHTB-----------HHHHHHC-TTS--SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCC-------cHHHHHHH-hhc-CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhh
Confidence 35688888865433 22333322 223 456999999999999999999998 899999999999998887643
Q ss_pred CC-CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 95 IP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 95 ~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. .++..+.|+.+.. ++ +.||+|++..+++|+ +++.+.++++.+...++|||++++.++
T Consensus 75 ~~l~i~~~~~Dl~~~~-~~-~~yD~I~st~v~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 75 EGLDIRTRVADLNDFD-FP-EEYDFIVSTVVFMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TT-TEEEEE-BGCCBS--T-TTEEEEEEESSGGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCceeEEEEecchhcc-cc-CCcCEEEEEEEeccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 22 5889999998876 44 679999999999999 889999999999999999999887553
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.71 E-value=1e-16 Score=126.83 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=87.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..++++|. +|+++|+|+.|++.++++....+ ++.+.+.|+...+ + +++||+|+++.++||
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-L-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-c-cCCCCEEEEeccccc
Confidence 456999999999999999999875 89999999999999988764322 4677777776554 3 357999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ +..+...++++++++|+|||++++.++
T Consensus 107 ~-----~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 107 L-----QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred C-----CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 8 767889999999999999999766653
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=2e-16 Score=130.19 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=93.8
Q ss_pred HHHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeE
Q 025475 41 PFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 41 ~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
..+...++ +..+|||+|||+|.++..++..+. +++++|+|+.|++.++.+.. ...++++|+.+++ +++++||+
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~-~~~~~fD~ 106 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP-LATATFDL 106 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc-CCCCcEEE
Confidence 33344443 356899999999999999988764 89999999999999998753 3578899999887 77889999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+++.++++. .++..++.+++++|+|||.++++++..
T Consensus 107 V~s~~~l~~~-------~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 107 AWSNLAVQWC-------GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEECchhhhc-------CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999998 788999999999999999999988654
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.70 E-value=3e-16 Score=127.57 Aligned_cols=109 Identities=24% Similarity=0.402 Sum_probs=94.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++.+. .++++++++|+.+.+ +++++||+|++..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 122 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGF 122 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEec
Confidence 46779999999999999999876 3 45899999999999999988753 347899999998887 6778999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++++ ++..++++++.++|+|||.+++.+...+.
T Consensus 123 ~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 123 GLRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred ccccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 99998 78889999999999999999998866543
No 26
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.70 E-value=3.2e-17 Score=130.43 Aligned_cols=101 Identities=30% Similarity=0.517 Sum_probs=87.2
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------CCeEEEccccCCCCCCCCCeeEEEe
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--------QLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--------~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+++|||+|||+|.++..|++.|. .|+|+|+++.|++.|++.....| ++++.+.++++.. +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeee
Confidence 36899999999999999999985 99999999999999999853332 2456666666654 34999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+++|+ .+++.+++.+.++|+|||.+++++.++
T Consensus 165 sevleHV-------~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9999999 999999999999999999999998754
No 27
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.70 E-value=5.7e-17 Score=114.74 Aligned_cols=95 Identities=31% Similarity=0.661 Sum_probs=81.3
Q ss_pred EEEEcccCcHhHHHHHHcC----CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEec-cchh
Q 025475 53 VLMVGCGNALMSEDMVKDG----YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDK-GTLD 126 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~----~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~-~~l~ 126 (252)
|||+|||+|..+..+.+.. ..+++++|+|+.|++.++++.... .+++++++|+.+++ ...++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999999873 269999999999999999998542 38999999999987 677799999995 4599
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGG 153 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG 153 (252)
|+ +++...++++++.++|+|||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 99 88999999999999999998
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.70 E-value=4e-16 Score=127.47 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=119.9
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEE
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
..+++.+|||+|||+|..+..+++. ...+++|+|+|+.|++.|++++... .+++++++|+.+.+ ++ .+|+|
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~d~v 126 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK--NASMV 126 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC--CCCEE
Confidence 3467779999999999999999875 2458999999999999999987542 36899999998876 43 58999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh-hhhh-ccccccceeEEEEEecCCCCCCCC--CC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA-RMIH-LKWKVYNWKIELYIIARPGFEKPG--GC 195 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~ 195 (252)
++..++||+ +++++..++++++++|+|||.+++.+...+.. .... +......|. ...|++... ..
T Consensus 127 ~~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~ 195 (239)
T TIGR00740 127 ILNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK------RANGYSELEISQK 195 (239)
T ss_pred eeecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHH------HHcCCCHHHHHHH
Confidence 999999999 77788999999999999999999998643321 1111 100000111 112221110 01
Q ss_pred CCCCcccCCCcccCCCCCCccccccCCCCceE
Q 025475 196 SSSMKSYLEPVPITDDGQLPAEFVLEDPDSHF 227 (252)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~ 227 (252)
...+.+...+.+..+...+++++||..+..+|
T Consensus 196 ~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~ 227 (239)
T TIGR00740 196 RTALENVMRTDSIETHKARLKNVGFSHVELWF 227 (239)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 12334556677778888899999999877543
No 29
>PRK05785 hypothetical protein; Provisional
Probab=99.69 E-value=2.8e-16 Score=127.02 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=89.2
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+....+++.+|||+|||+|.++..+++....+++|+|+|++|++.|+... ..+++|+.+++ +++++||+|
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-~~d~sfD~v 114 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-FRDKSFDVV 114 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-CCCCCEEEE
Confidence 34444444557799999999999999998873248999999999999998752 45789999988 889999999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++..+++|+ .++.+.+++++|+|||. +.+.++..|.
T Consensus 115 ~~~~~l~~~-------~d~~~~l~e~~RvLkp~--~~ile~~~p~ 150 (226)
T PRK05785 115 MSSFALHAS-------DNIEKVIAEFTRVSRKQ--VGFIAMGKPD 150 (226)
T ss_pred EecChhhcc-------CCHHHHHHHHHHHhcCc--eEEEEeCCCC
Confidence 999999999 88999999999999993 3345555543
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=2.3e-16 Score=130.08 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=87.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.. ..+++|+|+|+.|++.+++. +++++++|+.+++ +.++||+|+++.++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCceEEEEehhhh
Confidence 356799999999999999998873 34899999999999999764 5789999998774 456899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ .++.+++++++++|+|||.+++..+.
T Consensus 101 ~~-------~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WV-------PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hC-------CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99 78899999999999999999987543
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.69 E-value=2.6e-16 Score=120.48 Aligned_cols=104 Identities=31% Similarity=0.560 Sum_probs=86.3
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+....+++.+|||+|||.|.++..+.+.+. +++++|+++.+++. .++.....+..... .++++||+|+++
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP-FPDGSFDLIICN 85 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH-CHSSSEEEEEEE
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh-ccccchhhHhhH
Confidence 333356778999999999999999988877 99999999999988 12344444444444 567799999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+++|+ .++..++++++++|+|||++++.++...
T Consensus 86 ~~l~~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 86 DVLEHL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSGGGS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHHhhc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999999 7899999999999999999999997754
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=7.5e-16 Score=129.07 Aligned_cols=102 Identities=19% Similarity=0.359 Sum_probs=88.4
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+.+|||+|||+|.++..+++.|. +|+++|+|+.+++.++++....+ ++++...|+.... . +++||+|++..+++|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC
Confidence 45999999999999999999875 99999999999999998875422 6788888887765 3 6789999999999998
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++++...++++++++|+|||++++..
T Consensus 198 -----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 -----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred -----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 77789999999999999999977654
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=2.8e-16 Score=128.33 Aligned_cols=109 Identities=20% Similarity=0.379 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++|++|||||||.|.++..+++....+|+|+++|+++.+.+++++.. .. ++++...|..++. +.||.|++.+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDrIvSvg 145 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDRIVSVG 145 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccceeeehh
Confidence 679999999999999999999999545999999999999999997743 33 7888888888875 2399999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.++|+ ..+....+++.++++|+|||.+++.+...+.
T Consensus 146 mfEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 99999 7788999999999999999999998877655
No 34
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=6.6e-16 Score=130.96 Aligned_cols=103 Identities=26% Similarity=0.333 Sum_probs=88.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--c-CCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--E-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||+|||+|.++..++..|...|+|+|+|+.++..++... . ...++.++.+|+.+++ . .++||+|++..++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChh
Confidence 46799999999999999999988667999999999987654432 2 2347899999999987 5 7789999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|. .++..++++++++|+|||.+++.+.
T Consensus 200 ~H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 200 YHR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hcc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999 8889999999999999999988654
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=9.2e-16 Score=137.36 Aligned_cols=106 Identities=23% Similarity=0.332 Sum_probs=93.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|..+..+++....+++|+|+|+.+++.|+++.... .+++++++|+.+.+ +++++||+|++..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCccc
Confidence 466799999999999999888764448999999999999999887543 36899999998877 7778999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ .++..++++++++|+|||.+++.++.
T Consensus 344 h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 344 HI-------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 99 88899999999999999999998764
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.66 E-value=8.1e-16 Score=127.05 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=86.2
Q ss_pred CCCcEEEEcccCcH----hHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhc------C------------------
Q 025475 49 TSSRVLMVGCGNAL----MSEDMVKDG------YEDIVNIDISSVAIDMMKMKYE------E------------------ 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~----~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~~------~------------------ 94 (252)
++.+|+|+|||+|. ++..+++.+ ..+|+|+|+|+.|++.|++..- .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 444454432 2489999999999999998531 0
Q ss_pred -----CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 95 -----IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 -----~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++++.+.|+.+.+ .+.++||+|+|.++++|+ +++...+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 026899999999876 567899999999999999 77788899999999999999999865
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.66 E-value=9.1e-16 Score=128.93 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=87.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHH---hhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM---KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~---~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+..++. ......++.+..+++.+++ . ..+||+|++..+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gv 197 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGV 197 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcch
Confidence 3567999999999999999988886689999999999876543 2223346788889988886 3 347999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++|. .++..++++++++|+|||.+++.+.
T Consensus 198 L~H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 198 LYHR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhcc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999 8889999999999999999998764
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.66 E-value=2.1e-15 Score=122.92 Aligned_cols=104 Identities=29% Similarity=0.531 Sum_probs=92.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++.+.. +++.++.+|+.+.+ +++++||+|+++.+++|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-LEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-CCCCceeEEEEhhhhhh
Confidence 34689999999999999999886 4579999999999999998875 37889999999887 67789999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+ .++..++.+++++|+|||.+++.++..
T Consensus 111 ~-------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 111 C-------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred c-------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9 788999999999999999999987654
No 39
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=1.3e-15 Score=125.78 Aligned_cols=100 Identities=20% Similarity=0.384 Sum_probs=87.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+|+.|++.++++. +++.++.+|+.++. +..+||+|+++.++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCccEEEEccChh
Confidence 456799999999999999998873 458999999999999999876 46889999998764 446899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+ .+...++++++++|+|||.+++..
T Consensus 105 ~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99 788899999999999999998864
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=4.4e-15 Score=116.14 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=91.9
Q ss_pred HhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEE
Q 025475 44 RKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 44 ~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
...++++.+|||+|||+|..+..++.. ...+|+++|+++.+++.++++.+.. ++++++++|+.+.. . .++||+|+
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEE
Confidence 345666889999999999999988864 3569999999999999999987543 36999999999876 4 67899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
++. + .++..+++.++++|+|||.+++.............
T Consensus 118 ~~~----~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~ 156 (187)
T PRK00107 118 SRA----V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAEL 156 (187)
T ss_pred Ecc----c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHH
Confidence 864 2 45678999999999999999998765544444433
No 41
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=1.1e-15 Score=129.44 Aligned_cols=107 Identities=23% Similarity=0.335 Sum_probs=91.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++. +..+++++|+|+.|++.++++.. ..+++++.+|+.+.+ +++++||+|+++.+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC-CCCCceeEEEEcChhh
Confidence 35679999999999999888775 34589999999999999998764 247889999999887 7788999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+ .+...++++++++|+|||.+++.....+
T Consensus 190 ~~-------~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 190 YW-------PDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 98 6778899999999999999988764433
No 42
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.65 E-value=4.7e-16 Score=119.37 Aligned_cols=105 Identities=25% Similarity=0.325 Sum_probs=92.8
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCe-EEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-YLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~-~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.||++|||||..-...-......|+++|.++.|-+.+.+.++.. .++. ++.++.+++++++++++|+||+..+|...
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 68999999999888776554569999999999999998887542 3565 99999999988899999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++.+.|+++.|+|+|||++++.++...
T Consensus 159 -------e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 159 -------EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 9999999999999999999999997654
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.65 E-value=1.2e-15 Score=126.22 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=86.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||.|.++..+++. |. +|+|+.+|++..+.+++++...+ .+++..+|..+++ . +||.|++.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-~---~fD~IvSi 134 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-G---KFDRIVSI 134 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-C---CCCEEEEE
Confidence 678999999999999999999999 55 89999999999999999986533 6889999988876 2 89999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.+++|+ +.++...+++++.++|+|||.+++..+..+.
T Consensus 135 ~~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 135 EMFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp SEGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred echhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999 8889999999999999999999987765443
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.64 E-value=1.9e-15 Score=125.84 Aligned_cols=107 Identities=16% Similarity=0.329 Sum_probs=92.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|..+..++.. + ..+++++|+++.+++.++++... .++++++.+|+.+++ +++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEc
Confidence 567889999999999988777665 3 34799999999999999998643 347889999998887 777899999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.+++|. .+...++++++++|+|||.+++.++.
T Consensus 154 ~v~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLS-------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCC-------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 999988 77889999999999999999998753
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=5.3e-15 Score=115.41 Aligned_cols=108 Identities=15% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+|||+|||+|..+..++..+ ..+|+++|.++.+++.++++.+.. ++++++++|+.++. ..++||+|+++. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh
Confidence 6799999999999999988764 458999999999999998877532 46999999998874 456899999865 33
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
+...+++.++++|+|||.+++............+
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~ 153 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEA 153 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHH
Confidence 3456788889999999999987644444443333
No 46
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.63 E-value=5.2e-15 Score=113.80 Aligned_cols=113 Identities=23% Similarity=0.301 Sum_probs=94.8
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC-CCCCCCCeeE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-SFFEDESFDA 118 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~~D~ 118 (252)
.+.+...++++.+|||+|||.|.+...+.+....+.+|+|++++.+..|-++ .+.++++|+.+- ..+++++||.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 3567788999999999999999999999987556899999999998888765 578999999763 4488999999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~ 167 (252)
|+++.+++++ ..+..+++++.|+ |...+++.++...++.
T Consensus 79 VIlsqtLQ~~-------~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 79 VILSQTLQAV-------RRPDEVLEEMLRV---GRRAIVSFPNFGHWRN 117 (193)
T ss_pred EehHhHHHhH-------hHHHHHHHHHHHh---cCeEEEEecChHHHHH
Confidence 9999999999 9999999998776 5577777766554433
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=6.4e-17 Score=113.99 Aligned_cols=95 Identities=29% Similarity=0.496 Sum_probs=63.7
Q ss_pred EEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-CCCCCeeEEEeccchhhhc
Q 025475 54 LMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~ 129 (252)
||+|||+|.++..+++. ...+++++|+|+.|++.+++++.... +......+..+... ...++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999988 35599999999999988888876543 23344444333321 123589999999999999
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
+++..++++++++|+|||.+
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=8.4e-15 Score=131.56 Aligned_cols=113 Identities=25% Similarity=0.323 Sum_probs=91.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC-CCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF-FEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|..+..++... ..+++|+|+|+.|++.|+++.... .++.++++|+.+++. +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 56799999999999998888753 569999999999999999876432 367888999887652 567889999999999
Q ss_pred hhhcCCCC------ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTN------APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++..-.+ +..+..+++++++++|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 97621111 2467899999999999999999998743
No 49
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=1.5e-14 Score=117.76 Aligned_cols=106 Identities=28% Similarity=0.500 Sum_probs=92.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhc-CCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~-~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. ...++++++.|+.+.+ +.+++||+|++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~ 95 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEec
Confidence 4567799999999999999998863 4589999999999999998842 2347899999998877 6778999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ .++..+++++.++|+|||.+++.++
T Consensus 96 ~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 96 VLQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999 7889999999999999999998774
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.59 E-value=1.3e-14 Score=125.67 Aligned_cols=107 Identities=23% Similarity=0.433 Sum_probs=90.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++.... .+++...|..+. +++||+|++..+++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l----~~~fD~Ivs~~~~e 239 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL----NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc----CCCCCEEEEeCchh
Confidence 4577899999999999999998864348999999999999999988543 477777777554 35799999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+ +..+...++++++++|+|||.+++.++..+
T Consensus 240 hv-----g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 240 HV-----GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hC-----ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 98 667788999999999999999999876543
No 51
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=6.2e-15 Score=114.10 Aligned_cols=111 Identities=20% Similarity=0.348 Sum_probs=95.6
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..+++.+- +.+..+|.|+|||+|..+..++++ ....++|+|-|++|++.|+.+. +++++..+|+.++. ++.++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~~~~ 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PEQPT 93 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CCCcc
Confidence 34444443 235569999999999999999998 3569999999999999998876 67899999999996 67789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++++|.+++++ ++-..++.++...|.|||.|.+....
T Consensus 94 dllfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 94 DLLFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred chhhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEECCC
Confidence 999999999999 88889999999999999999997754
No 52
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.59 E-value=2.2e-14 Score=115.69 Aligned_cols=108 Identities=30% Similarity=0.515 Sum_probs=94.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|..+..+++.+. .+++++|+++.+++.++++.....+++++.+|+.+.+ +..++||+|+++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 577999999999999999988753 4899999999999999998763347899999999887 6677899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+. .++..+++++.++|+|||.+++.+...+.
T Consensus 118 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 118 NV-------TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred Cc-------ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 88 78899999999999999999998865443
No 53
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=1.2e-14 Score=117.59 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=87.7
Q ss_pred cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 52 RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+|||+|||+|..+..+++.. ..+++++|+|+.+++.+++++... ++++++..|+.+.+ .+ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC-CCCCEeehHHHHHh
Confidence 69999999999999998874 458999999999999999987542 36899999987665 43 58999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ .+...++++++++|+|||.+++.++.
T Consensus 80 ~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 I-------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9 77899999999999999999998763
No 54
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=2.7e-14 Score=110.60 Aligned_cols=117 Identities=25% Similarity=0.415 Sum_probs=88.8
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+.+... +..+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++...+ +++++..|..+.. +.++
T Consensus 23 L~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~ 98 (170)
T PF05175_consen 23 LLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGK 98 (170)
T ss_dssp HHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTC
T ss_pred HHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--cccc
Confidence 33444443 56799999999999999999986 3379999999999999999986532 4889999987764 5789
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
||+|+++.+++.- .........++++.+.++|+|||.++++...
T Consensus 99 fD~Iv~NPP~~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 99 FDLIVSNPPFHAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEEEEE---SBTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eeEEEEccchhcc--cccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 9999999986643 1112235788999999999999999765543
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=2.2e-14 Score=128.48 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=90.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC--CCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD--MSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~--~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++......++++++++|+.+ .+ +++++||+|+++.+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHH
Confidence 45699999999999999999885 48999999999999887654444578999999964 44 6678999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ +++...+++++++++|+|||++++.+..
T Consensus 115 ~l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 115 YL-----SDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99 6666899999999999999999997743
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.58 E-value=2.9e-14 Score=116.21 Aligned_cols=108 Identities=26% Similarity=0.462 Sum_probs=94.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++.+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++.. ..++.++.+|+.+.+ ...++||+|++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 56799999999999999998875 47999999999999999998754 246899999998876 6667899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++++ .+...++.++.++|++||.+++.++..+.
T Consensus 130 ~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 130 GLRNV-------PDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred ccccC-------CCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 99998 78899999999999999999998865543
No 57
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=4.1e-14 Score=114.39 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=85.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++++...+ ++.+++.|+.+. +..++||+|+++..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCC
Confidence 45677999999999999999988765599999999999999998875422 578888888764 356789999998764
Q ss_pred hhhc--------------CCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLM--------------CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~--------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... .+.........+++++.++|++||.+++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4220 0001112356788999999999999988653
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=112.84 Aligned_cols=150 Identities=21% Similarity=0.347 Sum_probs=110.3
Q ss_pred CChhhHHHHhccCCCce----eeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHH
Q 025475 14 GDALYWNARYVQEGGSF----DWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAID 86 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~ 86 (252)
....|||..|......+ .|+.. ..-.++...-+...+||++|||.|.....+++-. .-.++++|.|+.+++
T Consensus 34 ~~~k~wD~fy~~~~~rFfkdR~wL~~--Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 34 EASKYWDTFYKIHENRFFKDRNWLLR--EFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred chhhhhhhhhhhccccccchhHHHHH--hhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence 45679999998877654 33221 1111111111122289999999999999988863 258999999999999
Q ss_pred HHHHhhcCCC-CCeEEEccccCCC---CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 87 MMKMKYEEIP-QLKYLQMDVRDMS---FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 87 ~a~~~~~~~~-~v~~~~~d~~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+++..-.+ ++...+.|+.... ....+++|.|++.++|..+ +++.....+++++++|||||.|++.+++.
T Consensus 112 ~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 112 LVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred HHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9999875433 4555555655422 1567899999999999998 88999999999999999999999999987
Q ss_pred hhhhhhhc
Q 025475 163 PKARMIHL 170 (252)
Q Consensus 163 ~~~~~~~~ 170 (252)
.+.....+
T Consensus 187 ~DlaqlRF 194 (264)
T KOG2361|consen 187 YDLAQLRF 194 (264)
T ss_pred chHHHHhc
Confidence 76544444
No 59
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=4.6e-14 Score=114.79 Aligned_cols=107 Identities=19% Similarity=0.305 Sum_probs=86.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..+++. | ..+++|+|+|+.|++.++++... +++++.+.+...++ ..+++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELV-AEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccc-ccCCCccEEEEC
Confidence 35569999999999998888753 3 34899999999999999988643 35777777776666 566789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.++||+ ++++...++++++++++ |.+++.+...+
T Consensus 137 ~~lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999 55567889999999998 56667776655
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.54 E-value=2.5e-14 Score=117.14 Aligned_cols=104 Identities=28% Similarity=0.366 Sum_probs=84.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHH---hhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM---KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~---~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||||||+|.++..++..|...|+|+|.++...-+.+. .+.....+...-..+++++ . .+.||+|++.++|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCCcCEEEEeeeh
Confidence 567999999999999999999998899999999887665433 2222223334435677777 3 6789999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|. .++-..|+++++.|++||.+++-+..
T Consensus 193 YHr-------r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 193 YHR-------RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred hcc-------CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999 99999999999999999999987643
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.54 E-value=1.2e-13 Score=101.05 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.+. .++++++..|+.+.......+||+|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 456799999999999999999873 46899999999999999988754 346888888876532123358999998654
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ ...++++.+++.|+|||.+++..
T Consensus 98 ~~----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33 34688999999999999998865
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=7.8e-14 Score=108.95 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=86.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..++..+. +++++|+++.+++.+++++... .+++++++|..+.. .++||+|+++.++++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCC
Confidence 456899999999999999999876 8999999999999999987532 26788888887653 348999999998876
Q ss_pred hcCCC--------------CChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGT--------------NAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~--------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..... .+......+++++.++|+|||.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 51100 001125678999999999999998887554
No 63
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.54 E-value=3.2e-14 Score=111.51 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=99.2
Q ss_pred ChhhHHHHhccCCCceeeeccchhh-----HHHHHhhCC-------CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCH
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSAL-----RPFVRKYIP-------TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISS 82 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l-----~~~~~~~~~-------~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~ 82 (252)
..+||++.-.+..++..-+...+.+ ..+|.+... ...+.||.|||.|+.+..++..-+.+|-.||.++
T Consensus 9 a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~ 88 (218)
T PF05891_consen 9 AKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE 88 (218)
T ss_dssp HHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H
T ss_pred HHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCH
Confidence 3578987666555544444433221 334444322 2349999999999999988776677999999999
Q ss_pred HHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 83 VAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 83 ~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..++.|++.+.. ....++.+..+.++. ....+||+|++.+++.|+ .+++..++|++|...|+|+|.+++-+.
T Consensus 89 ~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lghL-----TD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 89 KFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLGHL-----TDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp HHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhhccC-----CHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 999999988754 223678888888886 445789999999999999 999999999999999999999999875
Q ss_pred C
Q 025475 161 G 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 163 ~ 163 (218)
T PF05891_consen 163 V 163 (218)
T ss_dssp E
T ss_pred C
Confidence 3
No 64
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.54 E-value=9.9e-14 Score=119.74 Aligned_cols=163 Identities=41% Similarity=0.777 Sum_probs=138.3
Q ss_pred CCCCCCCCChhhHHHHhccCC-CceeeeccchhhHHHHHhhCCCCC-cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHH
Q 025475 7 SCNTYNYGDALYWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSS-RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVA 84 (252)
Q Consensus 7 ~~~~~~~~~~~~w~~~y~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~ 84 (252)
+.....+++..||+.+|..++ ..++||..+..+...|...+.+.. +++.+|||.-.+...+.+.|+..++.+|+|+-.
T Consensus 4 p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~ 83 (482)
T KOG2352|consen 4 PQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVV 83 (482)
T ss_pred cccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHH
Confidence 455668999999999999885 778999998888888888877776 999999999999999999998899999999999
Q ss_pred HHHHHHhh-cCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChh---hHHHHHHHHHHcccCCcEEEEEEc
Q 025475 85 IDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI---SASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 85 i~~a~~~~-~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++.+.... ...+...+...|+..+. +++++||+|+..++++++++.....- .....+.++.|+|++||+++.++.
T Consensus 84 V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 84 VAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred HHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99988876 44457899999999998 99999999999999999987765555 677889999999999999888886
Q ss_pred C--Chhhhhhhc
Q 025475 161 G--DPKARMIHL 170 (252)
Q Consensus 161 ~--~~~~~~~~~ 170 (252)
. .|..+...+
T Consensus 163 ~~~vp~~r~~e~ 174 (482)
T KOG2352|consen 163 VQVVPQGRKPEW 174 (482)
T ss_pred eeeccCCCCeee
Confidence 4 444433333
No 65
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.53 E-value=3.6e-14 Score=102.92 Aligned_cols=111 Identities=24% Similarity=0.412 Sum_probs=86.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CCCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l 125 (252)
|.+|||+|||+|.++..+++.+..+++++|+++.+++.++.++... .+++++++|+.+.. ...+++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999999999997569999999999999999998643 36899999998764 3567899999999987
Q ss_pred hhhc-CCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLM-CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... ...........+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6431 1111223557889999999999999988763
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.53 E-value=1.7e-13 Score=117.78 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=90.5
Q ss_pred HHHHHhhCCC--CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCC
Q 025475 40 RPFVRKYIPT--SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFF 111 (252)
Q Consensus 40 ~~~~~~~~~~--~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~ 111 (252)
.+++...++. ..+|||+|||+|.++..+++.+ ..+++++|+|+.+++.++++++.. .++++...|..+. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~ 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--V 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--C
Confidence 4556666653 3589999999999999999874 559999999999999999987432 2567888887553 3
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
...+||+|+++.++|... ..+.....++++.++++|+|||.++++..
T Consensus 295 ~~~~fDlIlsNPPfh~~~--~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQH--ALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCEEEEEECcCcccCc--cCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 445899999999887531 01334567899999999999999998863
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.52 E-value=1.9e-13 Score=110.19 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=84.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..++..+. +++|+|+|+.|+..|+++.... .++.+.++|+.+.+ ++||+|++..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~ 128 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDV 128 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhH
Confidence 3567999999999999999998854 8999999999999999987532 26889999987764 68999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++|+ +.++...+++++.+++++++++.+
T Consensus 129 l~~~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9988 667788999999999887655554
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=2e-13 Score=114.40 Aligned_cols=108 Identities=22% Similarity=0.345 Sum_probs=83.8
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCee
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D 117 (252)
+.+.....++.+|||+|||+|.++..++..|..+++++|+++.+++.++++..... .+.....+... ...++||
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~~~~fD 227 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PIEGKAD 227 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---ccCCCce
Confidence 34445556778999999999999999988887799999999999999999875422 34455554222 3456899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+++...+ ....++.++.++|+|||+++++.+.
T Consensus 228 lVvan~~~~----------~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAE----------VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHH----------HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999976533 3467899999999999999998764
No 69
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=2.6e-13 Score=106.74 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++.... .+++++++|... . + .++||+|++..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~-~-~~~~D~v~~~~ 105 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E-L-PGKADAIFIGG 105 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h-c-CcCCCEEEECC
Confidence 3567799999999999999998874 458999999999999999887532 468888888743 2 2 35799999876
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..+++ ..+++.+.+.|+|||.+++...
T Consensus 106 ~~~~~----------~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 106 SGGNL----------TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CccCH----------HHHHHHHHHhcCCCeEEEEEEe
Confidence 54433 5678899999999999988654
No 70
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.51 E-value=3.8e-13 Score=108.18 Aligned_cols=111 Identities=20% Similarity=0.351 Sum_probs=89.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
...+|||+|||+|..+..++.+ ...++++||+.+.+.+.|+++.+.. .++++++.|+.++.. ....+||+|+||.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 4569999999999999999998 4579999999999999999998653 389999999998753 3345799999999
Q ss_pred chhhhcCC-CCCh----------hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCG-TNAP----------ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~-~~~~----------~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++-..-. .+++ -+..++++.+..+||+||.+.++.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 87654211 0111 124788899999999999999877
No 71
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.51 E-value=9.1e-14 Score=110.56 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=85.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccc-cCCCC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV-RDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~-~~~~~-~~~~~~D~v~~~~ 123 (252)
++.+|||+|||+|..+..++... ..+++++|+|+.+++.+++++.. .++++++++|+ ..++. +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999999999998763 45899999999999999988743 34789999998 55431 4567899999875
Q ss_pred chhhhcC-CCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+..+... ..........++++++++|+|||.+++.+..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 4322100 0001112578899999999999999997744
No 72
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.4e-13 Score=113.56 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=86.9
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCe----EEEccccCCCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLK----YLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~----~~~~d~~~~~~~~~~~ 115 (252)
.+.+.+...++.+|||+|||+|.++...++.|..+++|+|++|.+++.++.+...++ +. ....+.... ...++
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~~--~~~~~ 229 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLEV--PENGP 229 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccccchhh--cccCc
Confidence 567777888999999999999999999999998899999999999999999986532 22 222222222 23368
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|++|-..+ -...+...+.++|+|||+++++..-.
T Consensus 230 ~DvIVANILA~----------vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 230 FDVIVANILAE----------VLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ccEEEehhhHH----------HHHHHHHHHHHHcCCCceEEEEeehH
Confidence 99999986322 34688999999999999999988643
No 73
>PLN03075 nicotianamine synthase; Provisional
Probab=99.50 E-value=2.3e-13 Score=112.61 Aligned_cols=104 Identities=18% Similarity=0.297 Sum_probs=85.9
Q ss_pred CCCcEEEEcccCcHhHHHHHH--c-CCCcEEEEeCCHHHHHHHHHhhcC----CCCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVK--D-GYEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~--~-~~~~v~~vD~s~~~i~~a~~~~~~----~~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
++.+|+|+|||.|.++..++. . ..++++++|+++++++.|++.+.. .++++|.++|+.+.. ...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 567999999998855444333 3 255899999999999999999843 236999999998864 23467999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. +++++ +.+++.++++.+.+.|+|||.+++..
T Consensus 202 ~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 88888 66899999999999999999999876
No 74
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=3.7e-13 Score=112.04 Aligned_cols=104 Identities=27% Similarity=0.509 Sum_probs=82.2
Q ss_pred HHHHhhCC-CCCcEEEEcccCcHhHHHHHHcC----CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCC
Q 025475 41 PFVRKYIP-TSSRVLMVGCGNALMSEDMVKDG----YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 41 ~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~----~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~ 115 (252)
..+...++ +..+|||+|||+|.++..++... ...++|+|+|+.+++.|+++. +++.+.++|+.+++ +++++
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp-~~~~s 151 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLP-FADQS 151 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCC-CcCCc
Confidence 34444443 34589999999999999988752 237999999999999998764 56899999999988 88889
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|++... ...+++++|+|+|||+++++.+..
T Consensus 152 fD~I~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 152 LDAIIRIYA--------------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eeEEEEecC--------------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 999997532 113578999999999999987543
No 75
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.49 E-value=6.3e-15 Score=112.90 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=96.3
Q ss_pred EEEeCCHHHHHHHHHhhcC-----CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHccc
Q 025475 76 VNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 150 (252)
Q Consensus 76 ~~vD~s~~~i~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~ 150 (252)
+|+|+|+.|++.|+++... ..+++++++|+.+++ +++++||+|++..+++++ .++.+++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 4899999999999876532 236899999999998 888899999999999999 899999999999999
Q ss_pred CCcEEEEEEcCChhhhhhhccccccceeEEEEEecCCCCCCCCCCCCCC----cccCCCcccCCCCCCccccccCCCCce
Q 025475 151 PGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSM----KSYLEPVPITDDGQLPAEFVLEDPDSH 226 (252)
Q Consensus 151 ~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gf~~~~~~ 226 (252)
|||.+++.++..+....... ...|..... .+..+.- ... .... .+.....+..+...+++++||.++...
T Consensus 73 pGG~l~i~d~~~~~~~~~~~---~~~~~~~~~-~~~~~~~-~~~-~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 73 PGSRVSILDFNKSNQSVTTF---MQGWMIDNV-VVPVATV-YDL-AKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred cCeEEEEEECCCCChHHHHH---HHHHHccch-HhhhhHH-hCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 99999999988665422222 222332111 1111211 111 1111 122344455556668999999988754
Q ss_pred EE
Q 025475 227 FI 228 (252)
Q Consensus 227 ~~ 228 (252)
++
T Consensus 147 ~~ 148 (160)
T PLN02232 147 EI 148 (160)
T ss_pred EC
Confidence 43
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.49 E-value=3.4e-13 Score=114.13 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++..+|||+|||+|.++..++++. ..+++++|. +.+++.+++++... ++++++.+|+.+.+ ++ .+|+|++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEh
Confidence 466799999999999999999884 458999998 78999998887542 36899999998754 44 369999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|++ +++...++++++++.|+|||++++.++.
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99988 6677789999999999999999999864
No 77
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.49 E-value=3.8e-13 Score=108.74 Aligned_cols=106 Identities=31% Similarity=0.509 Sum_probs=89.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ ++++.+.|+.+.+....++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 366999999999999999888765 79999999999999998875432 588888888876522247899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+ .++..+++++.++|++||.+++.....
T Consensus 124 ~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 124 HV-------PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99 788999999999999999999887653
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.49 E-value=3.5e-13 Score=116.18 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=88.8
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 116 (252)
+.+.+...++++.+|||+|||+|.++..++.. ...+++++|+|+.+++.++++.+..+ +++++++|+.+......++|
T Consensus 241 LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~F 320 (423)
T PRK14966 241 LVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKW 320 (423)
T ss_pred HHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCc
Confidence 34444444566679999999999999998875 35589999999999999999986433 68999999876431124579
Q ss_pred eEEEeccchhhh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|+++.++... .-+....+....+++.+.+.|+|||.+++-.
T Consensus 321 DLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 321 DIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999875311 0112233345688888899999999987533
No 79
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.49 E-value=3.3e-13 Score=106.75 Aligned_cols=98 Identities=26% Similarity=0.362 Sum_probs=79.9
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEE
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVI 120 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~ 120 (252)
.+...++++.+|||+|||+|.++..+++.....++++|+++.+++.++.. +++++++|+.+ .+.+++++||+|+
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEE
Confidence 34455667789999999999999988876545789999999999988753 47888999876 3225677899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccC
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKP 151 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~ 151 (252)
++.+++|+ .++..+++++.+++++
T Consensus 81 ~~~~l~~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQAT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcC-------cCHHHHHHHHHHhCCe
Confidence 99999999 8889999999887653
No 80
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.48 E-value=3.5e-13 Score=109.65 Aligned_cols=106 Identities=27% Similarity=0.477 Sum_probs=89.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ..+.++..++.+.+....++||+|++..+++|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 567999999999999999988764 8999999999999999886432 25677888877664234578999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
. .+...+++.+.++|+|||.+++..+..
T Consensus 127 ~-------~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 127 V-------PDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 8 788899999999999999999887653
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.48 E-value=1.1e-12 Score=111.89 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=85.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
..+|||+|||+|.++..+++.+ ..+++++|+|+.+++.++++++..+ ..+++..|+... ..++||+|+++.++|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccC
Confidence 3489999999999999999874 4589999999999999999885533 456777776543 2468999999999886
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.. ..+......+++++.+.|+|||.++++...
T Consensus 274 g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GI--QTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred Cc--cccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 20 113356789999999999999999988754
No 82
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.47 E-value=2.1e-13 Score=107.80 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=84.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC--CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF--FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~ 123 (252)
...+|||+|||+|.++..++... ...++|+|+++.+++.|+++... ..+++++++|+.+++. ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 34589999999999999999874 55899999999999999887643 3489999999976531 3456899999876
Q ss_pred chhhhcCCCC---ChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTN---APISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+-.+. ... ..-....+++++.++|+|||.+++.+...
T Consensus 96 pdpw~--k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWP--KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCC--CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 53322 000 00012578999999999999999887544
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=5.5e-13 Score=112.44 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=87.7
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-CC--CCeEEEccccCCCCCCCC-
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-IP--QLKYLQMDVRDMSFFEDE- 114 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~-~~--~v~~~~~d~~~~~~~~~~- 114 (252)
..+...++++.+|||+|||+|..+..+++.. ..+++++|+|++|++.+++++.. .+ ++..+++|+.+.......
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc
Confidence 3345556677899999999999999998874 35899999999999999888743 33 356789999874212222
Q ss_pred ---CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 115 ---SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ---~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...++++..+++++ ++++...++++++++|+|||.+++..
T Consensus 135 ~~~~~~~~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 135 AAGRRLGFFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccCCeEEEEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33455555678888 77889999999999999999998754
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=8.7e-13 Score=105.19 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=79.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... ++++++.+|..+.. ....+||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEEc
Confidence 466799999999999998888762 358999999999999999887543 25889999998754 345689999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+++++ . +++.+.|+|||++++..
T Consensus 150 ~~~~~~-------~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTI-------P------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchh-------h------HHHHHhcCcCcEEEEEE
Confidence 887776 2 36789999999998754
No 85
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.3e-12 Score=105.32 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.++.....++.++.+|+.+... ...++||+|++..
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 4578899999999999999998873 358999999999999887776555689999999875310 1135699999542
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
. .+.....++++++++|||||.++++
T Consensus 150 ~---------~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 150 A---------QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred C---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1123355689999999999999994
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.46 E-value=7.4e-13 Score=108.84 Aligned_cols=109 Identities=22% Similarity=0.357 Sum_probs=83.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||+|||+|.++..++... ..+++++|+++.+++.++.+... ..+++++++|+.+. ++.++||+|+++.++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP--LPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--CcCCceeEEEECCCC
Confidence 34589999999999999999873 45899999999999999998753 23689999998774 456789999998765
Q ss_pred hhhc-------------------CCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLM-------------------CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~-------------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.... .+.........+++.+.++|++||.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4210 000011223578899999999999998754
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=9.9e-13 Score=106.71 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=79.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++... .++.+..+|+. ..+++||+|++..+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~v~~~~~ 136 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hccCCcCEEEEcch
Confidence 4567999999999999999998865 7999999999999999987542 36888888842 23468999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGI 154 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 154 (252)
++|+ +.+....+++++.++++.++.
T Consensus 137 l~~~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHY-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcC-----CHHHHHHHHHHHHhhcCCeEE
Confidence 9988 667788899999987754443
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.46 E-value=8.7e-13 Score=108.39 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=78.6
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
..+.....++.+|||+|||+|.++..++..|..+++++|+++.+++.+++++...+ +. +..... ..+.+||+|+
T Consensus 111 ~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~-~~~~~fD~Vv 184 (250)
T PRK00517 111 EALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLP-QGDLKADVIV 184 (250)
T ss_pred HHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEc-cCCCCcCEEE
Confidence 34444556788999999999999998888876579999999999999999875432 21 101111 1122799999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++... .....+++++.++|+|||.++++.+..
T Consensus 185 ani~~----------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 185 ANILA----------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred EcCcH----------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 87543 334678999999999999999987553
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.46 E-value=5.2e-13 Score=111.09 Aligned_cols=110 Identities=26% Similarity=0.409 Sum_probs=84.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+++.+...++.+|||+|||+|.++...++.|..+|+++|++|.+++.|+++...++ ..++......+ ...++||+
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~dl 228 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFDL 228 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EEE
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCCE
Confidence 566777778889999999999999999999998899999999999999999985433 12332222222 33478999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++|-..+ -+..++..+.++|+|||+++++..-.
T Consensus 229 vvANI~~~----------vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 229 VVANILAD----------VLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EEEES-HH----------HHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred EEECCCHH----------HHHHHHHHHHHhhCCCCEEEEccccH
Confidence 99986544 34678888999999999999988643
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=8.5e-13 Score=105.76 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++.. ..+++++++|..... ....+||+|++.
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~I~~~ 152 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDRIYVT 152 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCEEEEC
Confidence 457789999999999999988876 2 35899999999999999998854 347999999987754 456789999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....++ ...+.+.|+|||.+++..
T Consensus 153 ~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 665544 235677899999988854
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.45 E-value=1.1e-12 Score=104.14 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..++.. + ..+++++|+++.+++.+++++... .++.++++|..+......+.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 457779999999999999998765 3 458999999999999999887543 36888999987643123467999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
... . ..+..+++.+.++|+|||.+++..
T Consensus 118 ~~~---~-------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGG---S-------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCC---c-------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 542 2 456788999999999999998744
No 92
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=1.2e-12 Score=110.26 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
++.+|||+|||+|.++..+++.|. +|+++|+|+.|++.++++.... .++++.+.|+.+. +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEE
Confidence 466999999999999999999875 8999999999999999987532 2567777776543 367999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
..+++|+ +.+....+++.+.++ .++|.++
T Consensus 219 ~~vL~H~-----p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 219 LDVLIHY-----PQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred cCEEEec-----CHHHHHHHHHHHHhh-cCCEEEE
Confidence 9999988 555566777777754 5555543
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.44 E-value=1e-12 Score=105.67 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++... .+++++++|..+.. ....+||+|++.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEEEc
Confidence 4577799999999999999998873 235999999999999999988543 47899999997754 344689999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....++ ...+.+.|+|||++++..
T Consensus 154 ~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 665544 345778899999998854
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.44 E-value=1.8e-12 Score=103.58 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-------CCCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~~D 117 (252)
++++.+|||+|||+|.++..+++.. ...|+++|+++ + ...++++++++|+.+.. .+.+++||
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 4677899999999999999998873 35899999988 1 12356899999998852 14567899
Q ss_pred EEEeccchhhhcCCCCChh------hHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 118 AVIDKGTLDSLMCGTNAPI------SASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+|+++.+.++. +.+..+ ....+++++.++|+|||.+++..+....
T Consensus 120 ~V~S~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 120 VVMSDMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred EEecCCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 99998765543 111111 1256899999999999999998766543
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.42 E-value=3.9e-12 Score=102.04 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
..++.+|||+|||+|..+..++... .+++++|+++.+++.++++++.. .+++++.+|..+.. ...++||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccC
Confidence 3467799999999999998887774 48999999999999999988543 36899999986643 23468999999876
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+++ .+.+.+.|+|||.+++...
T Consensus 154 ~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 6555 2456789999999988664
No 96
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=3.8e-12 Score=108.75 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.+++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.+++.. .++.+.++|+.+++ ..+++||+|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCC
Confidence 46777999999999999988877754 8999999999999999988543 35789999999987 66778999999876
Q ss_pred hhhhcCC--CCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 125 LDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 125 l~~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+...... ........++++++.++|+|||.+++.....
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 5421000 0111336889999999999999998877544
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=4.8e-12 Score=105.51 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=84.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-C-CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-E-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|..+..++... ..+++++|+++.+++.++++.. . ..++.++++|+.+.. ..++||+|+++.+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--PGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--CCCceeEEEECCC
Confidence 356699999999999999999874 4689999999999999999876 2 237899999986643 3568999999876
Q ss_pred hhhh-------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSL-------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~-------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ..+....+....+++++.++|++||.+++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4321 0011223445788999999999999998744
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.40 E-value=5.9e-12 Score=88.16 Aligned_cols=100 Identities=30% Similarity=0.515 Sum_probs=83.7
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCCCCCCCCeeEEEeccchhh-h
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS-L 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~-~ 128 (252)
+++|+|||.|..+..++.....+++++|+++.++..+++... ...+++++..|+.+......+++|+|+++.++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999999999988545699999999999999984332 2247889999998875224568999999999888 5
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.....+++.+.+.|++||.+++.
T Consensus 81 -------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 -------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999875
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.39 E-value=7.5e-12 Score=104.56 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++.... .+++++++|+.+. ++.++||+|+++.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 34689999999999999999874 458999999999999999998543 3689999998654 34557999999865
Q ss_pred hhhh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ..+..+......+++.+.++|+|||.+++-.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4211 0011122345788999999999999988644
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=99.39 E-value=1.6e-11 Score=100.32 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=98.7
Q ss_pred CCCCCCChhhHHHHhccCCC-ceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHH
Q 025475 9 NTYNYGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAID 86 (252)
Q Consensus 9 ~~~~~~~~~~w~~~y~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~ 86 (252)
++-.|+++++--+.|..... ....+-....+...+........+|||+|||+|.++..++.+. ..+++++|+++.|++
T Consensus 23 ~~~~~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~ 102 (279)
T PHA03411 23 RPLTYEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFAR 102 (279)
T ss_pred cccccCcHHHHHHhcccccccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 33456666665555554310 1122222333332222222334699999999999998887763 358999999999999
Q ss_pred HHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCCh-----------hh--HHHHHHHHHHcccCCc
Q 025475 87 MMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP-----------IS--ASQMLGEVSRLLKPGG 153 (252)
Q Consensus 87 ~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~-----------~~--~~~~l~~~~~~L~~gG 153 (252)
.+++++ ++++++++|+.+.. ...+||+|+++.++++........ +. ..+.+.....+|+|+|
T Consensus 103 ~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G 177 (279)
T PHA03411 103 IGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTG 177 (279)
T ss_pred HHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCc
Confidence 999875 46899999998875 346899999999988861111000 00 2466777789999999
Q ss_pred EEEEEEcCCh
Q 025475 154 IYMLITYGDP 163 (252)
Q Consensus 154 ~l~i~~~~~~ 163 (252)
.+++..-+.|
T Consensus 178 ~~~~~yss~~ 187 (279)
T PHA03411 178 SAGFAYSGRP 187 (279)
T ss_pred eEEEEEeccc
Confidence 8877644433
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=1.3e-11 Score=103.25 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=84.0
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--C-CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.... . +++++++|+.+. ++..+||+|+++.++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 589999999999999999874 458999999999999999987532 2 489999998764 3444799999986533
Q ss_pred hh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.. ..+..+......++..+.++|+|||.+++-....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 11 0011223467889999999999999987755433
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.38 E-value=3.7e-12 Score=109.22 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=85.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-CCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-FFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~ 124 (252)
.+..+||+|||+|.++..++... ...++|+|+++.++..+.+++.. ..++.++++|+..+. .++++++|.|+++.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 34589999999999999999874 45899999999999999888744 458999999997642 267889999998654
Q ss_pred hhhhcCCCCChh----hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPI----SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.-+. ... ....+++++.|+|++||.+.+.+-.
T Consensus 202 dPW~-----KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWD-----KKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCcc-----ccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3322 111 1258999999999999999997743
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=7.1e-12 Score=99.29 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=83.5
Q ss_pred hhHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCC
Q 025475 38 ALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 38 ~l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~ 112 (252)
.+..++...+ .++.+|||+|||+|.++..++... ..+++++|+++.+++.++++++.. .+++++.+|+.+.....
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 3444444443 466799999999999999988653 458999999999999999987542 46889999886521122
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
...+|.++... . .....+++++.++|+|||.+++.....
T Consensus 107 ~~~~d~v~~~~----~-------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 107 APAPDRVCIEG----G-------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCCCEEEEEC----C-------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 23457665421 1 355788999999999999999887653
No 104
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.38 E-value=4.1e-11 Score=91.82 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=89.2
Q ss_pred hhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCC
Q 025475 38 ALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 38 ~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~ 112 (252)
.++.+..+. +.++.+++|+|||+|+.+..++..+ ..+++++|-++++++..+++.... +|+.++.+++-+.. ..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L-~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL-PD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh-cC
Confidence 344443333 4577799999999999999999655 679999999999999999988653 58999999987653 12
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..++|.|+..+. .....+++.+...|++||++++.....
T Consensus 100 ~~~~daiFIGGg-----------~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 100 LPSPDAIFIGGG-----------GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCCCEEEECCC-----------CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 227999998765 455788999999999999999866543
No 105
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.38 E-value=7.9e-12 Score=97.25 Aligned_cols=113 Identities=22% Similarity=0.311 Sum_probs=87.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
..-|||||||+|..+..+.+.|+ .++|+|+|+.|++.|.+..-. -.++.+|+-.-.++..++||.|++...+.++.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 55899999999999999999985 899999999999999964311 25777887653338999999999998887752
Q ss_pred CCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCChhhh
Q 025475 130 CGT----NAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 166 (252)
Q Consensus 130 ~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~ 166 (252)
... .+...+..++..++.+|++|+..++..+-.....
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 222 2333456678889999999999999876544433
No 106
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=5e-12 Score=105.56 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=84.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-------CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
+.+.+||++|||+|..+..++++ +..+|++||+++.+++.|++.+. ..++++++.+|..++.....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45669999999999999999987 46689999999999999999874 24579999999987642345789999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++..+-.+. ....-....+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~---~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVG---PAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 986432211 0111123778899999999999988753
No 107
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=101.11 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=78.8
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.++|+|||+|..++.++++ +.+|+|+|+|+.|++.+++..+.. ...++...++.++. -.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHhh
Confidence 8999999999888888888 569999999999999998876421 12333444444443 347899999999999998
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCc-EEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGG-IYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG-~l~i~~~~ 161 (252)
+...+.++++|+|+++| .+.+..++
T Consensus 114 --------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 --------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred --------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 78889999999997766 76666655
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.37 E-value=9.7e-12 Score=102.06 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=81.9
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-CCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-FEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~ 127 (252)
+.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++... +++++++|+.+... ...++||+|+++.++..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3489999999999999998763 348999999999999999998653 36889999876421 12357999999987542
Q ss_pred h-------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 L-------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~-------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. ..+....+....++..+.++|+|||.+++...
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 00111122356888888999999999987654
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=99.37 E-value=1.1e-11 Score=97.40 Aligned_cols=110 Identities=25% Similarity=0.432 Sum_probs=84.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--C--CeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--Q--LKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~--v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++.... + +.++.+|+.+. +.+.+||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECC
Confidence 456689999999999999999885 599999999999999988874321 2 78888888764 3455899999987
Q ss_pred chhhh--------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSL--------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~--------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+.+. ..+..+......+++++.++|+|||.+++...
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 65431 01111234567889999999999999887653
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.1e-11 Score=99.20 Aligned_cols=120 Identities=17% Similarity=0.316 Sum_probs=90.8
Q ss_pred HHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCC
Q 025475 40 RPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 40 ~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~ 114 (252)
.+++.+.++ .+.+|||+|||.|.++..+++.. ..+++.+|+|..+++.+++++..+. +..+...|+.+.. .+
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v--~~- 223 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV--EG- 223 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc--cc-
Confidence 455555544 33499999999999999999985 6799999999999999999986432 3356677776653 33
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+||+|++|.++|.= -.-...--++++....+.|++||.|.++....+.
T Consensus 224 kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 224 KFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred cccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 89999999998842 0001122358999999999999999998875443
No 111
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.37 E-value=4.9e-12 Score=107.26 Aligned_cols=111 Identities=27% Similarity=0.316 Sum_probs=82.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------CC----CCeEEEccccCCC---CCCC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------IP----QLKYLQMDVRDMS---FFED 113 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--------~~----~v~~~~~d~~~~~---~~~~ 113 (252)
++.+|||+|||-|..+......+...++|+|++...|+.|+++++. .. ...++.+|..... .+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6779999999999988888888878999999999999999999821 11 2456777765421 1233
Q ss_pred --CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 114 --ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 114 --~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+||+|-|..++|+. |. +.+....+|+.+.+.|+|||+++.+.+..
T Consensus 142 ~~~~FDvVScQFalHY~-Fe--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYA-FE--SEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGG-GS--SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHh-cC--CHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 589999999999996 33 45777889999999999999999988543
No 112
>PHA03412 putative methyltransferase; Provisional
Probab=99.35 E-value=2.2e-11 Score=97.32 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=94.7
Q ss_pred CCCCCCChhhHHHHhccCCCc----eeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc----CCCcEEEEeC
Q 025475 9 NTYNYGDALYWNARYVQEGGS----FDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD----GYEDIVNIDI 80 (252)
Q Consensus 9 ~~~~~~~~~~w~~~y~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~----~~~~v~~vD~ 80 (252)
++-.+.+++|--+.|...... ..-+.....+.+.+......+.+|||+|||+|.++..+++. ...+++++|+
T Consensus 5 ~~~~~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEI 84 (241)
T PHA03412 5 KALTYEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVEL 84 (241)
T ss_pred ccccHHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEEC
Confidence 334456666666666543211 12233334454444322234669999999999999998874 2348999999
Q ss_pred CHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCC-----ChhhHHHHHHHHHHcccCCcE
Q 025475 81 SSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN-----APISASQMLGEVSRLLKPGGI 154 (252)
Q Consensus 81 s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~ 154 (252)
++.+++.|+++. +++.+++.|+.... + +++||+|++|.++.-...... +......++..+.+++++|+.
T Consensus 85 D~~Al~~Ar~n~---~~~~~~~~D~~~~~-~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 85 NHTYYKLGKRIV---PEATWINADALTTE-F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CHHHHHHHHhhc---cCCEEEEcchhccc-c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999999999876 35889999998765 3 568999999999775421110 112356688888886666664
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=102.39 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=82.7
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++.... .+++++++|+.+. ++.++||+|+++.++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 589999999999999998874 458999999999999999998543 3589999998764 3446799999986532
Q ss_pred hh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-. ..+..+......+++.+.++|+|||.+++-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 10 0011123445788999999999999998743
No 114
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=2.5e-11 Score=100.17 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=87.4
Q ss_pred ceeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEE
Q 025475 29 SFDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYL 101 (252)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~ 101 (252)
...|-...+-|...+..- +.++.+|||+|||+|.++..+++. + ...|++||+++.+.+.........+++.++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I 186 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI 186 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEE
Confidence 445655555565444222 568889999999999999999988 2 458999999997665554444333688999
Q ss_pred EccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 102 QMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 102 ~~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
..|+..... ...+++|+|++... . +.+...++.+++++|||||.+++.
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dva--~-------pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADVA--Q-------PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeCC--C-------cchHHHHHHHHHHhccCCCEEEEE
Confidence 999865310 23357999998753 1 255667778899999999999984
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=3e-11 Score=106.47 Aligned_cols=116 Identities=18% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++++.. .++++++.|..+++....++||.|+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 356779999999999999998886 2458999999999999999998653 357899999887653345689999987
Q ss_pred cchhhhcCCCCCh---------------hhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAP---------------ISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.++........++ ....+++..+.+.|+|||.++.++++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 6553321111111 134778999999999999999998763
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.32 E-value=1.4e-11 Score=110.55 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=81.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+.+|||+|||+|.++..++.. ...+++++|+|+.+++.|+++.... .+++++++|+.+. ...++||+|+++.++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCC
Confidence 358999999999999988875 3458999999999999999987532 3688999998654 345689999998754
Q ss_pred hhh-------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 126 DSL-------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 126 ~~~-------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
... ..+..+.+....+++.+.++|+|||.+++.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 321 011122344577888999999999998764
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=3.8e-11 Score=92.87 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=78.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+++ +++..+|.|+++..++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCccc
Confidence 456699999999999999999984 5999999999999999999866568999999999987 56667999999877653
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. .+...++++.. .+.++|.+++..
T Consensus 90 ~------~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 90 S------TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred H------HHHHHHHHhcC--CCcceEEEEEEH
Confidence 2 23344444332 234677776643
No 118
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.31 E-value=4.8e-11 Score=98.80 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..+++.. .+.++++|+++.+++.++++++.. .++++++.|..+++ ...++||+|+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEc
Confidence 3567799999999999999988762 358999999999999999998653 36888999987765 344569999987
Q ss_pred cchhhhcCCCCC--------hh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNA--------PI-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~--------~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
....-...-..+ ++ ...++++.+.++|+|||+++.+++..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 643321100011 11 23568999999999999999888763
No 119
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.30 E-value=5.8e-11 Score=110.68 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=92.2
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~~ 112 (252)
+..+.++.... ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++++.+ .+++++++|+.++....
T Consensus 527 r~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 527 RPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred HHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc
Confidence 33445555543 47799999999999999999988768999999999999999998532 26899999987753112
Q ss_pred CCCeeEEEeccchhhhcCC----CCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 113 DESFDAVIDKGTLDSLMCG----TNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+||+|+++.+...-.-. .....+...++..+.++|+|||.+++.....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4689999998763211000 0012456778889999999999998876543
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=6.6e-11 Score=104.50 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=86.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++..+ +++++++|+.+.+. ...++||.|+++.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 3467799999999999999999874 3589999999999999999986543 47889999987642 2356799999876
Q ss_pred chhhhcC--------CCCChh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMC--------GTNAPI-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~--------~~~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+...... ....++ ...+++..+.++|+|||.++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5331100 001112 2357899999999999999998864
No 121
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=2.2e-11 Score=95.90 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-------CCCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~~D 117 (252)
++++.+|||+|||+|.++..++... ..+++++|+++.+ ..++++++++|+.+.. ..+.++||
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4678899999999999999888763 4479999999864 1246788888987642 13456799
Q ss_pred EEEeccchhhhcCC-C---CChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCG-T---NAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~-~---~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+++.+.+..... . ...+...++++.++++|+|||.+++..+.
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 99987542210000 0 01123578999999999999999986543
No 122
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.29 E-value=3.1e-11 Score=98.72 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=84.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++..+|+|||+|.|.++..+++.. ..+++.+|+ |..++.+++ .++++++.+|+++. ++. +|++++.+++|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~~--~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFDP--LPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTTC--CSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHhh--hcc--ccceeeehhhh
Confidence 455689999999999999999884 568999999 889998888 46899999999833 454 99999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCC--cEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPG--GIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~g--G~l~i~~~~ 161 (252)
++ ++++..++|+++++.|+|| |.|+|.++.
T Consensus 170 ~~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DW-----SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hc-----chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 99 8999999999999999999 999999864
No 123
>PRK04457 spermidine synthase; Provisional
Probab=99.28 E-value=2.8e-11 Score=99.90 Aligned_cols=113 Identities=14% Similarity=0.271 Sum_probs=85.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++.+|||+|||+|.++..++... ..+++++|+++.+++.|++.+.. .++++++.+|..+......++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456689999999999999998763 56899999999999999998753 35799999998765312335799999863
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
. +.. ..+..-....+++.+.+.|+|||.+++..+..+
T Consensus 145 ~-~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 F-DGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred C-CCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 1 110 111112347899999999999999998665543
No 124
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.27 E-value=3.4e-11 Score=104.69 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCC-C--
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSF-F-- 111 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~-~-- 111 (252)
.+..+.. +.++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++..+ .+++++++|+.+... +
T Consensus 211 ~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 211 SRLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred HHHHHHH-hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh
Confidence 3334433 3457899999999999998877767669999999999999999998532 268899999987521 1
Q ss_pred CCCCeeEEEeccchhhhcCCCCCh-------hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAP-------ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..++||+|+++.+...- +. .....++..+.++|++||.+++.+++
T Consensus 290 ~~~~fDlVilDPP~f~~-----~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVE-----NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred cCCCCCEEEECCCCCCC-----ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 24579999999774221 11 23455666788999999999987765
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.6e-11 Score=91.96 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=84.8
Q ss_pred hhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCC
Q 025475 37 SALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFED 113 (252)
Q Consensus 37 ~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~ 113 (252)
.....++... +.++.+|||||||+|..+..+++... +|+.+|..+...+.|++++... .|+.++++|...-- .+.
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCC
Confidence 3344444333 45788999999999999999999844 9999999999999999999654 47999999987753 355
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+||.|+.......+ +. .+.+.|++||++++..-
T Consensus 137 aPyD~I~Vtaaa~~v---------P~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV---------PE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC---------CH----HHHHhcccCCEEEEEEc
Confidence 789999987765554 22 34566999999998663
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=9.8e-11 Score=103.96 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++... .+++++++|+.+.. ++++||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 46779999999999999888775 2358999999999999999988643 36899999998774 456899999764
Q ss_pred chhhhcCCC--------CChh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGT--------NAPI-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~--------~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+..-..... ..++ ....++.++.++|+|||+++.+++..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 321110000 0111 23568999999999999999998764
No 127
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.25 E-value=1.3e-10 Score=90.54 Aligned_cols=101 Identities=23% Similarity=0.383 Sum_probs=65.2
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeE
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
+.+.+.+ .++...|.|+|||.+.++..+.. +. +|+..|+... +-.+..+|+...| +++++.|+
T Consensus 63 iI~~l~~-~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~-------------n~~Vtacdia~vP-L~~~svDv 125 (219)
T PF05148_consen 63 IIEWLKK-RPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP-------------NPRVTACDIANVP-LEDESVDV 125 (219)
T ss_dssp HHHHHCT-S-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S-------------STTEEES-TTS-S---TT-EEE
T ss_pred HHHHHHh-cCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC-------------CCCEEEecCccCc-CCCCceeE
Confidence 3344443 35566999999999999976643 23 7999999653 3467899999999 99999999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+|+...|.- .+...++.|+.|+||+||.|.|.+....-
T Consensus 126 ~VfcLSLMG--------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf 163 (219)
T PF05148_consen 126 AVFCLSLMG--------TNWPDFIREANRVLKPGGILKIAEVKSRF 163 (219)
T ss_dssp EEEES---S--------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-
T ss_pred EEEEhhhhC--------CCcHHHHHHHHheeccCcEEEEEEecccC
Confidence 997665544 58899999999999999999999965433
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=99.24 E-value=8.2e-11 Score=99.72 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=83.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh--c-------CCCCCeEEEccccCCCCCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY--E-------EIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~--~-------~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
.+.+.+||++|||+|..+..+++.. ..++++||+++.+++.|+... . ..++++++.+|..++.....++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3556699999999999999999874 569999999999999999721 1 24689999999988632345689
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|++..+ ... ...........+++.+++.|+|||++++..
T Consensus 228 DVIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99999742 110 000112234778999999999999988765
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.24 E-value=5.3e-11 Score=94.64 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|..+..++.. + ...|+++|+.+..++.|++++.. ..++.++++|..... ....+||.|++.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccCCCcCEEEEe
Confidence 578889999999999999999887 3 34799999999999999999864 348999999987653 345689999998
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.....+ -..+.+.|++||++++..-
T Consensus 149 ~a~~~i-------------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 149 AAVPEI-------------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred eccchH-------------HHHHHHhcCCCcEEEEEEc
Confidence 765544 2335677999999988553
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=8e-11 Score=99.53 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|.++..+++.. ...|+++|+++.+++.|+++++. ..++.++++|..+.. ....+||+|++.
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~fD~Ii~~ 156 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAPYDVIFVT 156 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCCccEEEEC
Confidence 4567799999999999999998863 23699999999999999998754 346889999987664 344679999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....++ ...+.+.|+|||.+++..
T Consensus 157 ~g~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 655544 234667899999988754
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.1e-10 Score=101.58 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=85.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCC---CCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF---FEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~---~~~~~~D~v~ 120 (252)
.++.+|||+|||+|..+..+++. + .++++++|+++.+++.+++++... .+++++++|+.+.+. ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 46779999999999999999886 2 458999999999999999998653 368999999987642 2346899999
Q ss_pred eccchhhhcCCC--C------Chhh-------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCGT--N------APIS-------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~--~------~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++....-..... + ++++ ..++++++.++|||||+++.+++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 865322110000 0 1111 478899999999999999988765
No 132
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.22 E-value=1.8e-10 Score=90.63 Aligned_cols=105 Identities=22% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCCcEEEEcccCcH----hHHHHHHc-----C-CCcEEEEeCCHHHHHHHHHhh-------------------c--C---
Q 025475 49 TSSRVLMVGCGNAL----MSEDMVKD-----G-YEDIVNIDISSVAIDMMKMKY-------------------E--E--- 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~----~~~~l~~~-----~-~~~v~~vD~s~~~i~~a~~~~-------------------~--~--- 94 (252)
+..+|+..||++|. ++..+.+. + ..+++|+|+|+.+++.|++-. . +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34599999999996 33334441 1 248999999999999998721 0 0
Q ss_pred ------CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 95 ------IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 ------~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...|+|.+.|+.+.+ ...+.||+|+|.+++.++ +.+...++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 026889999998833 456789999999999999 88999999999999999999999855
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2e-10 Score=101.97 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=85.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++++.. .+++++++|+.+......++||+|+++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 46679999999999999999886 2468999999999999999988643 3689999999876421226899999876
Q ss_pred chhhhcCC--------CCChhh-------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCG--------TNAPIS-------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~--------~~~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
........ ..++.+ ...+++.+.++|+|||.++.+++.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 53221000 011112 256899999999999999987765
No 134
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.21 E-value=1.7e-10 Score=95.80 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCcEEEEcccCcH----hHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhh------------------cC------C-
Q 025475 50 SSRVLMVGCGNAL----MSEDMVKDG-----YEDIVNIDISSVAIDMMKMKY------------------EE------I- 95 (252)
Q Consensus 50 ~~~vLD~G~G~G~----~~~~l~~~~-----~~~v~~vD~s~~~i~~a~~~~------------------~~------~- 95 (252)
..+|+..||++|. ++..+.+.. ..+|+|+|+|+.+++.|++-. .. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999996 333333421 247999999999999998741 00 0
Q ss_pred --------CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 96 --------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 96 --------~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+|.+.|+.+.+....+.||+|+|.+++.|+ +++.+.++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 257888899887541235789999999999999 88899999999999999999987754
No 135
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.7e-10 Score=96.06 Aligned_cols=106 Identities=24% Similarity=0.396 Sum_probs=80.4
Q ss_pred cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+|||+|||+|..+..++... ..+|+++|+|+.+++.|+++....+ ++.+++.|.++.. .++||+||+|.++-.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeCCCCCCC
Confidence 79999999999999999985 4599999999999999999986543 4455555655542 2389999999875432
Q ss_pred c------------------CCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 129 M------------------CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 129 ~------------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .+....+....++.++.+.|++||.+++-.-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0112234568888999999999998877553
No 136
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.20 E-value=3.7e-10 Score=99.79 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=82.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-C--CeEEEccccCCCC-CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP-Q--LKYLQMDVRDMSF-FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~-~--v~~~~~d~~~~~~-~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|..+..+++. +.++++++|+++.+++.++++++..+ . +.+..+|...... ...++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 46779999999999999999886 34589999999999999999986533 2 3335666655431 145679999976
Q ss_pred cchhhhcCC--CC------Chh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCG--TN------API-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~--~~------~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
......... .+ .++ ...++++++.++|||||.+++++++-
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 432221000 00 111 24788999999999999999998764
No 137
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=7.6e-11 Score=101.41 Aligned_cols=127 Identities=18% Similarity=0.137 Sum_probs=98.9
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCC-
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSF- 110 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~- 110 (252)
++..+..+..... +.+||++-|-||.++..++..|..+|+.||+|..++++|+++++-+ ..+.++++|++++-.
T Consensus 205 qR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 205 QRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK 283 (393)
T ss_pred hHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHH
Confidence 4555667777767 8899999999999999999999889999999999999999998532 257899999988632
Q ss_pred --CCCCCeeEEEeccchhhh-cC-CCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 111 --FEDESFDAVIDKGTLDSL-MC-GTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 111 --~~~~~~D~v~~~~~l~~~-~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
-...+||+|++.++-..- .. ...-..+...++..+.++|+|||.++++++...
T Consensus 284 ~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 284 AERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 234589999998762210 00 012235668889999999999999999987644
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.20 E-value=1.4e-10 Score=96.42 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+||++|||+|..+..+++.. ..+++++|+++.+++.+++.+.. .++++++.+|..+......++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345599999999999999998875 56899999999999999997632 24688888887664212346899999
Q ss_pred eccchhhhcCCCCChhh--HHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..+...- +... ...+++.+.++|+|||.+++..
T Consensus 151 ~D~~~~~~-----~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVG-----PAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCC-----cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 87542211 1122 4688899999999999998864
No 139
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.20 E-value=7.4e-11 Score=96.79 Aligned_cols=117 Identities=25% Similarity=0.381 Sum_probs=92.8
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----C----CCeEEEccccCC-----
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----P----QLKYLQMDVRDM----- 108 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~----~v~~~~~d~~~~----- 108 (252)
+|....+++..++++|||-|..++.....|..+++|+||++-.|+.|+.++.+. . .+.++.+|.+..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 345556778899999999999888888888889999999999999999988531 1 357888887542
Q ss_pred CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
-++.+.+||+|-|.+++|+. |. +.+..+-+++++.+.|+|||+++-+.+.
T Consensus 190 ~e~~dp~fDivScQF~~HYa-Fe--tee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYA-FE--TEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred ccCCCCCcceeeeeeeEeee-ec--cHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 11345559999999999984 22 4467788999999999999999887654
No 140
>PLN02366 spermidine synthase
Probab=99.20 E-value=2.1e-10 Score=96.46 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCC-CCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSF-FEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~-~~~~~~D~ 118 (252)
.+.+.+||++|||.|..+..++++. ..+++.||+++.+++.+++.+.. .++++++.+|...+.. .+.++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3567799999999999999999884 56899999999999999998742 3589999999876531 23568999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|++...-.+. ....-....+++.+.+.|+|||.+++..
T Consensus 169 Ii~D~~dp~~---~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVG---PAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9986432211 0111124678999999999999997643
No 141
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.19 E-value=1.9e-10 Score=90.86 Aligned_cols=104 Identities=5% Similarity=0.042 Sum_probs=77.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++.++..+++++|.++.+++.++++++.. .+++++++|+.+.......+||+|+++.++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 46699999999999999877776679999999999999999987543 3689999998764212245699999998743
Q ss_pred hhcCCCCChhhHHHHHHHHHH--cccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~i~~~ 160 (252)
. .....+++.+.. +|+++|.+++...
T Consensus 133 ~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 133 K--------GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C--------ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 2 223344444443 4789998887653
No 142
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.18 E-value=1.3e-11 Score=96.65 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=85.6
Q ss_pred hHHHHHhhCC-CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-CCCCCe
Q 025475 39 LRPFVRKYIP-TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-FEDESF 116 (252)
Q Consensus 39 l~~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~~~ 116 (252)
+.+.|...-. +-.++||+|||||..+..+... ..+++|||+|.+|++.|.++-- --+..++++..+.. ..+++|
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCCcc
Confidence 4444444322 2359999999999999999887 4589999999999999987631 11334455543321 456789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|++..++.++ -.+..++--+...|+|||.+.++.-
T Consensus 190 DLi~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 190 DLIVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cchhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEec
Confidence 999999999999 8899999999999999999998773
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.16 E-value=3.2e-10 Score=92.11 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=80.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-----CCCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-----FEDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-----~~~~~~D 117 (252)
.++.+|||+|||+|..+..++.. +.++++++|+++++++.|+++++.. .+++++.+|+.+..+ .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35669999999999988888765 3569999999999999999998643 368999999876421 1246899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+|++.. +......++..+.++|+|||.+++-
T Consensus 147 ~VfiDa----------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDA----------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999753 2245667899999999999988763
No 144
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.16 E-value=2.2e-10 Score=92.12 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=77.8
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
..++||+|+|.|..+..++.. +.+|++.|.|+.|..+.+++ ..+ +.+..++. -.+.+||+|.|.++|+.-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k-----g~~--vl~~~~w~-~~~~~fDvIscLNvLDRc- 164 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK-----GFT--VLDIDDWQ-QTDFKFDVISCLNVLDRC- 164 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC-----CCe--EEehhhhh-ccCCceEEEeehhhhhcc-
Confidence 458999999999999999887 55899999999998877765 233 33444444 234579999999999988
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++..+|+.+++.|+|+|.++++.
T Consensus 165 ------~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 ------DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ------CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 899999999999999999998865
No 145
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1e-09 Score=83.07 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=106.8
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
..-++..|+...++|-.......-...+..+ ....++|+|||+|..+.++++. +...+.++|++|.+.+...+...
T Consensus 12 ~~~f~dVYEPaEDTFlLlDaLekd~~eL~~~--~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~ 89 (209)
T KOG3191|consen 12 RLDFSDVYEPAEDTFLLLDALEKDAAELKGH--NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR 89 (209)
T ss_pred hhhhhhccCccchhhHHHHHHHHHHHHHhhc--CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence 3334566666555543322211112222222 2568999999999999999887 35579999999999998877764
Q ss_pred CC-CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCC--------------CCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 94 EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG--------------TNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 94 ~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~--------------~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.+ .++..+++|+.+.- ..++.|+++.+..+--.-+. ....+-..+++..+-.+|.|.|.+++.
T Consensus 90 ~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 90 CNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred hcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 33 36789999998764 44899999998865433221 223334577788888999999999887
Q ss_pred EcC--ChhhhhhhccccccceeEEEEEecCCCC
Q 025475 159 TYG--DPKARMIHLKWKVYNWKIELYIIARPGF 189 (252)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (252)
... .|..-...+ ....|........+.|.
T Consensus 168 ~~~~N~p~ei~k~l--~~~g~~~~~~~~Rk~~~ 198 (209)
T KOG3191|consen 168 ALRANKPKEILKIL--EKKGYGVRIAMQRKAGG 198 (209)
T ss_pred ehhhcCHHHHHHHH--hhcccceeEEEEEecCC
Confidence 754 444333333 33444433333333333
No 146
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.14 E-value=1.7e-10 Score=91.98 Aligned_cols=90 Identities=23% Similarity=0.447 Sum_probs=73.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+....|.|+|||.+.++. .. ...|+.+|+.+ .+-+++.+|+.+.| +++++.|++|+...|.
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-------------~~~~V~~cDm~~vP-l~d~svDvaV~CLSLM- 239 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-------------VNERVIACDMRNVP-LEDESVDVAVFCLSLM- 239 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec-------------CCCceeeccccCCc-CccCcccEEEeeHhhh-
Confidence 556699999999998776 22 34899999855 25688999999998 9999999999654433
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
-.+...++.+++|+|++||.++|.+....
T Consensus 240 -------gtn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 240 -------GTNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred -------cccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 26889999999999999999999986543
No 147
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.13 E-value=6.3e-10 Score=87.01 Aligned_cols=120 Identities=22% Similarity=0.273 Sum_probs=93.4
Q ss_pred chhhHHHHHhhCCCCCc-EEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCC-CeEEEccccCCC-
Q 025475 36 YSALRPFVRKYIPTSSR-VLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQ-LKYLQMDVRDMS- 109 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~-vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~-v~~~~~d~~~~~- 109 (252)
...+.+.+...++.... |||||||||..+..++.+- .....-.|+++......+..... .+| ..-+..|+.+.+
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 34577888888887776 9999999999999999984 55888999998886666655432 222 234566766542
Q ss_pred CC------CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 110 FF------EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 110 ~~------~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. ..++||+|++.+++|-. +.+....+++.+.++|++||.|++..+
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 01 24589999999999988 889999999999999999999998653
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.5e-10 Score=87.32 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=66.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+.+|+|+|||||.++...+..|..+|+|+|+++++++.++++.+.. .++.++++|+.++. +.+|.|++|.++-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCcc
Confidence 45589999999999999999999889999999999999999998653 47999999999875 46889999987554
Q ss_pred h
Q 025475 128 L 128 (252)
Q Consensus 128 ~ 128 (252)
.
T Consensus 121 ~ 121 (198)
T COG2263 121 Q 121 (198)
T ss_pred c
Confidence 3
No 149
>PRK03612 spermidine synthase; Provisional
Probab=99.12 E-value=3.3e-10 Score=102.26 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHh--hc-------CCCCCeEEEccccCCCCCCCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMK--YE-------EIPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~--~~-------~~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
+++.+|||+|||+|..+..+++++. .+++++|+++++++.++++ +. +.++++++.+|..+.....+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5567999999999999999998753 6999999999999999984 21 235799999999875323346899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+++..-... .....-....+++.+.+.|+|||.+++..
T Consensus 376 vIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997542221 00011123568899999999999998864
No 150
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.8e-10 Score=88.57 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=88.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|+|.|.|+|.++..++.. | .++++..|+.++..+.|+++++. .. ++++...|+.+.. ..+ .||+|+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~~-~vDav~L 169 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DEE-DVDAVFL 169 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-ccc-ccCEEEE
Confidence 678999999999999999999975 3 57999999999999999999965 22 4889999998875 333 8999997
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+.++++.+++.++++|+|||.+++..+....
T Consensus 170 ------------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 170 ------------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ------------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 3389999999999999999999887765443
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.07 E-value=6.6e-09 Score=77.72 Aligned_cols=119 Identities=23% Similarity=0.306 Sum_probs=98.2
Q ss_pred cchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-
Q 025475 35 RYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS- 109 (252)
Q Consensus 35 ~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~- 109 (252)
+.+.+.+.+.+.+. .+.-|||+|+|+|.++..++++| ...++++|+|++.+....+.+ +.++++++|+.++.
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~ 108 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRT 108 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHH
Confidence 33445666666654 45589999999999999999997 558999999999999998887 45678899988764
Q ss_pred ---CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 110 ---FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 110 ---~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.....||.|++...+-.+ +.....++++.+...|..||.++-.+++
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHhhcCCCeeeeEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2556779999999888877 7788899999999999999999988876
No 152
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.07 E-value=1.9e-10 Score=90.44 Aligned_cols=107 Identities=21% Similarity=0.348 Sum_probs=85.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-c-C--CCCCeEEEccccCCC-CCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-E-E--IPQLKYLQMDVRDMS-FFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-~-~--~~~v~~~~~d~~~~~-~~~~~~~D~v~~ 121 (252)
.+.+.+|||.|.|-|..+...+++|..+|+.++.++..++.|.-+- + + ...++++.+|+.+.. .+.+.+||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3467899999999999999999999879999999999999887653 1 1 126899999998753 378899999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
..+ -++....-.-..+.++++|+|++||.++-
T Consensus 212 DPP----RfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 212 DPP----RFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred CCC----ccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 765 22222334568889999999999999864
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=1e-09 Score=86.78 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=79.1
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-------------------------
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP------------------------- 96 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~------------------------- 96 (252)
+.+..-.+..+|||||..|.++..+++. +...++|+||++..|..|+.++....
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 3333345668999999999999999998 56689999999999999999874311
Q ss_pred ------------CCeEEEccc----cCCCCCCCCCeeEEEeccc--hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 97 ------------QLKYLQMDV----RDMSFFEDESFDAVIDKGT--LDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 97 ------------~v~~~~~d~----~~~~~~~~~~~D~v~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++.++..+. .++..+....||+|+|--+ +-|+ .-+++.+..++++++++|.|||+|++
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHL---NwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHL---NWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEec---ccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111111111 0010123467999998654 4454 22457789999999999999999987
No 154
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.05 E-value=1.8e-09 Score=88.59 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCcEEEEcccCcH----hHHHHHHcC------CCcEEEEeCCHHHHHHHHHhh-------c------------C--C---
Q 025475 50 SSRVLMVGCGNAL----MSEDMVKDG------YEDIVNIDISSVAIDMMKMKY-------E------------E--I--- 95 (252)
Q Consensus 50 ~~~vLD~G~G~G~----~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~-------~------------~--~--- 95 (252)
..+|+-.||++|. ++..+.+.+ ..+|+|+|+|..+++.|+.-. . . .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5599999999996 333343432 358999999999999997621 0 0 0
Q ss_pred -------CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 96 -------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 96 -------~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|.|.+.|+.+.+ ...+.||+|+|-+++.++ +.+...++++.++..|+|||+|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 14778888887765 356679999999999999 88999999999999999999999854
No 155
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.05 E-value=1.2e-09 Score=86.14 Aligned_cols=103 Identities=23% Similarity=0.364 Sum_probs=77.9
Q ss_pred cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCC-C-CCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-F-FEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~-~-~~~~~~D~v~~~~~l~ 126 (252)
.+||+|||.|.++..++... ...++|+|+....+..+..+.. ...|+.++++|+.... . ++++++|.|..+++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-- 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-- 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC--
Confidence 89999999999999999874 6699999999999988887774 4569999999998732 1 45689999997543
Q ss_pred hhcCCCCChhh--------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPIS--------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.|.+.. ...++..+.++|++||.+.+.+-.
T Consensus 98 -----DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 98 -----DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred -----CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 222222 278999999999999999998844
No 156
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.05 E-value=6.6e-10 Score=92.70 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=81.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
=.+..|||+|||+|.++.+.++.|..+|++||-|.-+ +.|++.+..+. .++++++.+.+.. +|.++.|+|++-+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhh
Confidence 3677999999999999999999998899999987654 88888775432 4899999999986 77789999999876
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
=++++++ ..+..++-.--+.|+|||.++
T Consensus 137 Gy~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 5554221 455666666679999999854
No 157
>PLN02672 methionine S-methyltransferase
Probab=99.04 E-value=2e-09 Score=102.98 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC------------------CCCeEEEccccCCCC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI------------------PQLKYLQMDVRDMSF 110 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~------------------~~v~~~~~d~~~~~~ 110 (252)
+.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++...+ .+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999874 468999999999999999988531 258999999987531
Q ss_pred CCCCCeeEEEeccchhhh---------------------------cC----CCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 FEDESFDAVIDKGTLDSL---------------------------MC----GTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~---------------------------~~----~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....+||+||+|.++-.- +. +..+....++++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 112369999999874310 00 12333445788899999999999887644
Q ss_pred cCChhhhhh
Q 025475 160 YGDPKARMI 168 (252)
Q Consensus 160 ~~~~~~~~~ 168 (252)
-........
T Consensus 279 G~~q~~~v~ 287 (1082)
T PLN02672 279 GGRPGQAVC 287 (1082)
T ss_pred CccHHHHHH
Confidence 334444443
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.03 E-value=1.9e-09 Score=91.61 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++.+. ..+++++++|+.++.....++||+|+++.+-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 45799999999999999999986 5999999999999999998854 34799999999876412335799999875521
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-+ ...+++. ...++|++.++++.
T Consensus 252 G~---------~~~~~~~-l~~~~~~~ivyvsc 274 (315)
T PRK03522 252 GI---------GKELCDY-LSQMAPRFILYSSC 274 (315)
T ss_pred Cc---------cHHHHHH-HHHcCCCeEEEEEC
Confidence 11 1222232 33357777776654
No 159
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.02 E-value=3.2e-09 Score=94.34 Aligned_cols=109 Identities=13% Similarity=0.259 Sum_probs=80.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-C--CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-F--FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~--~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..++..+ .+++++|+|+.|++.|+++... ..+++++++|+.+.. . +.+++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 356799999999999999999885 5899999999999999998753 347999999987532 1 334679999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+..- ....++.+.+ +++++.++++. .|....+.+
T Consensus 375 PPr~g----------~~~~~~~l~~-~~~~~ivyvSC--np~tlaRDl 409 (443)
T PRK13168 375 PPRAG----------AAEVMQALAK-LGPKRIVYVSC--NPATLARDA 409 (443)
T ss_pred cCCcC----------hHHHHHHHHh-cCCCeEEEEEe--ChHHhhccH
Confidence 65332 2344555555 58888888865 344434333
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.01 E-value=6.4e-09 Score=87.29 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=96.5
Q ss_pred hhhHHHHHh--hCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEc-cccCCCCC
Q 025475 37 SALRPFVRK--YIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQM-DVRDMSFF 111 (252)
Q Consensus 37 ~~l~~~~~~--~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~-d~~~~~~~ 111 (252)
+.+++.+.. .+.+|..|||.-||||.+...+...|. +++|+|++..|++.++.|++..+ ...+... |+.+++ +
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l 260 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-L 260 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-C
Confidence 334444433 356888999999999999999999886 99999999999999999997653 4545555 999998 8
Q ss_pred CCCCeeEEEeccchhhhcCCCC--ChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 112 EDESFDAVIDKGTLDSLMCGTN--APISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++.++|.|++..++---..-.. -.+-..++++.+.++|++||++++.....+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~ 314 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP 314 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc
Confidence 8878999999887543210111 134578899999999999999998876333
No 161
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.01 E-value=1.4e-09 Score=90.07 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=89.9
Q ss_pred eccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCC
Q 025475 33 YQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDM 108 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~ 108 (252)
+-.++..+.++... ..+.+|||+-|-||.++...+..|..+|+.||.|..+++++++++.-+ ..+++++.|+.++
T Consensus 108 FlDqR~nR~~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~ 186 (286)
T PF10672_consen 108 FLDQRENRKWVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF 186 (286)
T ss_dssp -GGGHHHHHHHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH
T ss_pred cHHHHhhHHHHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence 33345566777665 457899999999999999999988779999999999999999997422 3689999999874
Q ss_pred CC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 109 SF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 109 ~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
-. -..++||+|++..+-..- ....-..+..+++..+.++|+|||.|++++++..
T Consensus 187 l~~~~~~~~fD~IIlDPPsF~k-~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 187 LKRLKKGGRFDLIILDPPSFAK-SKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp HHHHHHTT-EEEEEE--SSEES-STCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred HHHHhcCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 21 124689999998762211 0001124567788999999999999988876543
No 162
>PLN02823 spermine synthase
Probab=99.01 E-value=4.2e-09 Score=89.57 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=82.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+||.+|+|.|..+..+++.. ..+++.||+++.+++.+++.+.. .++++++.+|...+.....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 455689999999999999998864 56899999999999999998742 36899999999886423456899999
Q ss_pred eccchhhhcCCCCChhhHHHHHH-HHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLG-EVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~i~~ 159 (252)
+... .....+.+..-....+++ .+.+.|+|||.+++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8732 110000000012356777 8999999999987653
No 163
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.99 E-value=2.8e-09 Score=84.64 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=82.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEE-ccccCCCC-CCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQ-MDVRDMSF-FEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~-~d~~~~~~-~~~~~~D~v~ 120 (252)
.+..+|||+|.+.|..+.+++.. . ..+++.+|+++++.+.|+++++..+ .+..+. +|..+... ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46679999999999999999987 2 5689999999999999999997543 477777 47665431 3468999999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
... ...+...+++.+.++|+|||.+++=.
T Consensus 138 IDa----------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 IDA----------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EeC----------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 753 44677889999999999999998744
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=4.6e-09 Score=86.70 Aligned_cols=76 Identities=12% Similarity=0.284 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+.+ ++ .+|.|+++.+++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch--hceEEEEcCCcc
Confidence 3466799999999999999999985 4899999999999999998865568999999998876 44 489999988865
No 165
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.98 E-value=1.3e-09 Score=84.97 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=77.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC-CC--CCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS-FF--EDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~-~~--~~~~~D~v~~~ 122 (252)
.+.++||+.||+|.++...+++|..+|+.||.++.+++..+++++..+ .++++..|..... .. ...+||+|++.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 477999999999999999999998899999999999999999986433 4788888865432 11 46789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH--HcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~~ 159 (252)
+++..- .....++..+. .+|+++|.+++-.
T Consensus 122 PPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKG-------LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 887754 22466777776 7899999887654
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.98 E-value=3.2e-09 Score=84.25 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=80.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-----CCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-----FEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-----~~~~~~D~ 118 (252)
+..+|||+|+++|..+..+++. + .++++.+|+++...+.|++.++.. .+++++.+|..+.-. ...++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4569999999999999999986 2 469999999999999999998643 379999999876421 12458999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+... +..+....++.+.++|++||.+++-.
T Consensus 125 VFiDa----------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99864 33567788889999999999988743
No 167
>PLN02476 O-methyltransferase
Probab=98.97 E-value=5.2e-09 Score=86.37 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=80.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CC----CCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FF----EDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~----~~~~~D 117 (252)
.+..+|||+|+++|..+..++.. + .++++++|.+++..+.|+++++.. .+++++.+|+.+.. .+ ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 34669999999999999999875 2 457999999999999999999653 37999999987642 11 136899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+|+... +..+...+++.+.++|++||.+++
T Consensus 197 ~VFIDa----------~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 197 FAFVDA----------DKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999763 336778889999999999999876
No 168
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.96 E-value=3.8e-09 Score=81.90 Aligned_cols=107 Identities=23% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCC---CCCCCCCeeE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDM---SFFEDESFDA 118 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~---~~~~~~~~D~ 118 (252)
.++.+|||+|||+|..+..++.. +..+|+..|.++ .++.++.+++.+ +++.+...|-.+. ......+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46679999999999999999998 666999999999 999999887542 3566666654331 1023468999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++..+++.- +....+++.+.++|+++|.+++....+
T Consensus 123 IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999977 889999999999999999877766544
No 169
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.95 E-value=6.3e-09 Score=81.78 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=75.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-C-CC-CCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-F-ED-ESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~-~~-~~~D~v~~~ 122 (252)
.+.+|||++||+|.++..++.+|..+++++|.++.+++.++++++.. .+++++++|+.+... . .. ..+|+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 46799999999999999999999779999999999999999987543 257899999965421 1 12 247999988
Q ss_pred cchhhhcCCCCChhhHHHHHHHH--HHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEV--SRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~l~i~~ 159 (252)
..+..- ....++..+ ..+|+++|.+++-.
T Consensus 129 PPy~~~--------~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 129 PPFFNG--------ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred cCCCCC--------cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 775422 233334433 35788888776544
No 170
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=9.9e-10 Score=86.19 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=88.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
....++|+|||.|.....+...+..+++-+|.|-.|++.++..-...-.+.....|-+.++ +.+.++|+|+++..+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhhh
Confidence 4458999999999999999999877999999999999998865321113456667777777 899999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++...+.+|...|||+|.++.+-++
T Consensus 151 -------NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 151 -------NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred -------ccCchHHHHHHHhcCCCccchhHHhc
Confidence 88999999999999999998876544
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.95 E-value=6e-09 Score=90.51 Aligned_cols=109 Identities=12% Similarity=0.163 Sum_probs=80.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++.+.. .+++++++|+.+.......+||+|+++.+-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45699999999999999999876 58999999999999999988543 3789999999775311224699999987643
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
-+ ...+++.+.+ ++|++.++++. .|....+.+
T Consensus 312 G~---------~~~~l~~l~~-~~p~~ivyvsc--~p~TlaRDl 343 (374)
T TIGR02085 312 GI---------GKELCDYLSQ-MAPKFILYSSC--NAQTMAKDI 343 (374)
T ss_pred CC---------cHHHHHHHHh-cCCCeEEEEEe--CHHHHHHHH
Confidence 22 2334444443 68888888765 455544444
No 172
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.92 E-value=9.9e-09 Score=85.86 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
-...+|+|+|.|..+..+... +.++-+++.+...+-.+...+. +.|+.+.+|+++-. | +-|+|++.+++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw- 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW- 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc--CCcceecccccccC--C--CcCeEEEEeecccC-
Confidence 358999999999999999995 5589999999888887777764 34888888886543 2 45699999999999
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++++..++|++|+..|+|||.+++.+..-|.
T Consensus 250 ----tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 ----TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ----ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 9999999999999999999999999975554
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=6.7e-09 Score=86.41 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.+. +++++|+++.|++.+++++.. ++++++++|+.+++ +++-..|.|++|.+++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-LSELQPLKVVANLPYN 116 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC-HHHcCcceEEEeCCcc
Confidence 4667999999999999999999865 999999999999999988754 68999999999876 4432258899887654
No 174
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.90 E-value=1e-08 Score=83.41 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC--CCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS--FFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~--~~~~~~~D~v 119 (252)
+.||.+|||.|.|+|.++..++.. + .++|+..|+.++..+.|+++++.. .++++...|+.+-. ...+..+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 679999999999999999999976 3 669999999999999999998642 37899999997533 1124679999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcc-cCCcEEEEEEcCCh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYGDP 163 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~i~~~~~~ 163 (252)
+.. .+++..++..+.+.| ++||.+++..++-.
T Consensus 118 fLD------------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 118 FLD------------LPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp EEE------------SSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred EEe------------CCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 974 377888999999999 89999988776533
No 175
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.89 E-value=1.2e-08 Score=83.23 Aligned_cols=145 Identities=20% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCChhhHHHHhccCCCcee---eec-cchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH
Q 025475 13 YGDALYWNARYVQEGGSFD---WYQ-RYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88 (252)
Q Consensus 13 ~~~~~~w~~~y~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a 88 (252)
++..+|.+..|........ ... ....+.+.+...-.++.++||+|||+-.....-+..-..+++..|+++..++..
T Consensus 16 FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 16 FDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREEL 95 (256)
T ss_dssp B-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred CCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHH
Confidence 4445666667754433321 110 011222223222234558999999985543333333366899999999998877
Q ss_pred HHhhcCCC------------------------------CC-eEEEccccCCCCCCC-----CCeeEEEeccchhhhcCCC
Q 025475 89 KMKYEEIP------------------------------QL-KYLQMDVRDMSFFED-----ESFDAVIDKGTLDSLMCGT 132 (252)
Q Consensus 89 ~~~~~~~~------------------------------~v-~~~~~d~~~~~~~~~-----~~~D~v~~~~~l~~~~~~~ 132 (252)
++.+++.. .| .++.+|+.+.+++.. .+||+|++..+++.. .
T Consensus 96 ~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a---~ 172 (256)
T PF01234_consen 96 EKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA---C 172 (256)
T ss_dssp HHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----
T ss_pred HHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH---c
Confidence 76543210 12 377889987654433 359999999999986 4
Q ss_pred CChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 133 NAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+.+...++++++.++|||||.|++...
T Consensus 173 ~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 173 KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5668899999999999999999999774
No 176
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.88 E-value=6.9e-09 Score=81.80 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=73.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~ 115 (252)
+..+...+.++.+|+|+.||.|.++..++..+ ...|+++|++|.+++.++++...+ ..+..+++|..++. ....
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~ 169 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGK 169 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--Cccc
Confidence 44555667889999999999999999999843 558999999999999999988532 36889999999986 3778
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
+|.|+++.+- ....++..+.+++++||.+
T Consensus 170 ~drvim~lp~-----------~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 170 FDRVIMNLPE-----------SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEEE--TS-----------SGGGGHHHHHHHEEEEEEE
T ss_pred cCEEEECChH-----------HHHHHHHHHHHHhcCCcEE
Confidence 9999987542 2234677788899999876
No 177
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.88 E-value=1e-08 Score=82.35 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=82.2
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC--CCCCCeeEEEeccch
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF--FEDESFDAVIDKGTL 125 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l 125 (252)
..+||||||.|.+...++... ...++|||+....+..|...+.. .+|+.+++.|+..+.+ .++++.|-|..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence 489999999999999999984 66899999999988888877743 3489999999977532 3555999999743
Q ss_pred hhhcCCCCChhhH--------HHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISA--------SQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..|-+..+ ..+++.+.++|++||.+.+.+-
T Consensus 128 -----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 -----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 33333333 6789999999999999999873
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.88 E-value=4.1e-08 Score=80.88 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCee---EEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD---AVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D---~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.++.++...++++++++|+.+.+ +. .+| +|+++.+
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~-~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD-LP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC-hh--HcCCcceEEEcCC
Confidence 4567999999999999999999864 799999999999999988755568999999998876 43 466 7887766
Q ss_pred hh
Q 025475 125 LD 126 (252)
Q Consensus 125 l~ 126 (252)
++
T Consensus 104 y~ 105 (253)
T TIGR00755 104 YN 105 (253)
T ss_pred hh
Confidence 44
No 179
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=3.6e-08 Score=79.54 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=82.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEcccc----CCCCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVR----DMSFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~----~~~~~~~~~~D~v~ 120 (252)
.+..+||+|||+|..+..++.. +.+.++++|.|+.++..|.+++... +.+.++..+++ +..+...+..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4458999999999999999876 4679999999999999999998542 35666644443 22224568899999
Q ss_pred eccchhhh--c-----------------CCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSL--M-----------------CGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~--~-----------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|..+-.- + .+.........++.-+.|.|++||.+.+-...
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 99875422 0 01123334466777788999999999886653
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.87 E-value=1e-08 Score=90.53 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=76.4
Q ss_pred hHHHHHhhCCC------CCcEEEEcccCcHhHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhhc--C-CCCCeEEEcc
Q 025475 39 LRPFVRKYIPT------SSRVLMVGCGNALMSEDMVKDG-----YEDIVNIDISSVAIDMMKMKYE--E-IPQLKYLQMD 104 (252)
Q Consensus 39 l~~~~~~~~~~------~~~vLD~G~G~G~~~~~l~~~~-----~~~v~~vD~s~~~i~~a~~~~~--~-~~~v~~~~~d 104 (252)
+...+...... +..|||+|||+|.++...++.+ ..+|++||-++.++...+.+.+ + .+.|+++.+|
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d 249 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGD 249 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 44445554332 4689999999999998887764 5699999999998887766532 2 2479999999
Q ss_pred ccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 105 VRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 105 ~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
++++. . ..++|+||+=.. ..++ ..+.....+....+.|||||.++
T Consensus 250 ~r~v~-l-pekvDIIVSElL-Gsfg----~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 250 MREVE-L-PEKVDIIVSELL-GSFG----DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTSC-H-SS-EEEEEE----BTTB----TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCC-C-CCceeEEEEecc-CCcc----ccccCHHHHHHHHhhcCCCCEEe
Confidence 99996 3 348999998543 2221 22455567888899999999854
No 181
>PRK04148 hypothetical protein; Provisional
Probab=98.85 E-value=6e-08 Score=71.06 Aligned_cols=106 Identities=13% Similarity=0.254 Sum_probs=75.7
Q ss_pred hHHHHHhhCC--CCCcEEEEcccCcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCC
Q 025475 39 LRPFVRKYIP--TSSRVLMVGCGNAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 39 l~~~~~~~~~--~~~~vLD~G~G~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+++...++ ++.+++|+|||+|. ++..+.+.|. +|+++|+++.+++.++.+ .+++++.|+++...-.-..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhc
Confidence 4445555443 34689999999996 8888888876 999999999999998876 3689999999876222356
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+|+|.+.. ++.+++..+.++.+-+ |.-+++.....
T Consensus 78 a~liysir----------pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIR----------PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeC----------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 89999743 4455555555555533 45676666543
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.84 E-value=5.8e-08 Score=86.16 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=86.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||.|.-+..++.. +.+.++++|+++.-++.+++++... .++.+...|...+.....+.||.|++.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 357789999999999999999886 2458999999999999999988654 367888888876642334579999977
Q ss_pred cchhhhcCCCCChh---------------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPI---------------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~---------------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+.-....-.+++ ...++|..+.++|||||+|+.++++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 65432211111111 1278899999999999999988876
No 183
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.83 E-value=2.8e-08 Score=82.33 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=82.8
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+||-+|.|.|..++.++++. ..+++.||+++..++.+++.+.. .++++++..|..++..-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999996 66999999999999999998842 36889999999887422334799999864
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+=. . +....-.-..+++.++++|+++|.++..
T Consensus 158 tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 311 1 0001112378999999999999999987
No 184
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.82 E-value=2.3e-08 Score=80.47 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=64.6
Q ss_pred hHHHHHhh-C-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCC-eEEEccccCCC--CC--
Q 025475 39 LRPFVRKY-I-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMS--FF-- 111 (252)
Q Consensus 39 l~~~~~~~-~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v-~~~~~d~~~~~--~~-- 111 (252)
+..++... + .++.+|||+|||+|.++..+++.|..+++++|+++.|+....+. .+++ .+...|+.... .+
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~---~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ---DERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc---CCCeeEeecCCcccCCHhHcCC
Confidence 34444443 1 25668999999999999999999877999999999877652222 1222 23344444321 01
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.-..+|+++++ +...+..+.++|++ |.+++.
T Consensus 140 d~~~~DvsfiS---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 140 DFATFDVSFIS---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CceeeeEEEee---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 11256666643 23357888899999 776553
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.82 E-value=3.2e-08 Score=80.65 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=79.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CC-----CCCCee
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FF-----EDESFD 117 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~-----~~~~~D 117 (252)
+..+|||+|+++|..+..++.. + .++++.+|.+++..+.|+..++.. .+|+++.+++.+.. .+ ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 4559999999999999999875 2 458999999999999999998643 37999999987642 11 136899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+|+... +.......++.+.++|++||.+++
T Consensus 159 ~iFiDa----------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDA----------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecC----------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999863 335667888888999999999876
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.82 E-value=2.3e-08 Score=83.73 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. .++++++++|+.+.+ ++ .||+|+++.
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~~--~~d~VvaNl 109 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-FP--YFDVCVANV 109 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-cc--ccCEEEecC
Confidence 4567799999999999999999885 4899999999999999998753 357999999998765 33 689999987
Q ss_pred chhhh
Q 025475 124 TLDSL 128 (252)
Q Consensus 124 ~l~~~ 128 (252)
+++-.
T Consensus 110 PY~Is 114 (294)
T PTZ00338 110 PYQIS 114 (294)
T ss_pred CcccC
Confidence 76643
No 187
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.80 E-value=3.1e-08 Score=77.16 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCc---------EEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YED---------IVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFED 113 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~---------v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~ 113 (252)
..++..++|..||+|.+....+..+ ... ++|+|+++.+++.++.++...+ .+.+.+.|+.+++ +.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~ 104 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPD 104 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTT
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-ccc
Confidence 3567799999999999999887764 223 8899999999999999986432 5789999999998 777
Q ss_pred CCeeEEEeccchhhhcCCC--CChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGT--NAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++|+|+++.++.-- .+. ....-..++++++.++|++ ..+++..
T Consensus 105 ~~~d~IvtnPPyG~r-~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRR-LGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp SBSCEEEEE--STTS-HCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred CCCCEEEECcchhhh-ccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 899999999876542 010 1122346678888999988 4444444
No 188
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.80 E-value=3.6e-08 Score=87.45 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=78.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-C--CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-F--FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~--~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++.. ..+++++++|+.+.. . ....+||+|+++
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 355799999999999999999874 4899999999999999998753 347999999987631 1 234579999986
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+-.- ....+++.+.+ +++++.++++. .|....+.+
T Consensus 370 PPr~G---------~~~~~l~~l~~-l~~~~ivyvsc--~p~tlard~ 405 (431)
T TIGR00479 370 PPRKG---------CAAEVLRTIIE-LKPERIVYVSC--NPATLARDL 405 (431)
T ss_pred cCCCC---------CCHHHHHHHHh-cCCCEEEEEcC--CHHHHHHHH
Confidence 54211 12445555544 78888777653 354443333
No 189
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.79 E-value=7.1e-08 Score=81.45 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEE-ccccCCCC---CCCCCeeEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQ-MDVRDMSF---FEDESFDAV 119 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~-~d~~~~~~---~~~~~~D~v 119 (252)
.+.++||||||+|.....++.. ...+++|+|+++.+++.|+++++..+ ++++.. .+..+... ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 3469999999999877777654 23489999999999999999986542 466643 33333210 235689999
Q ss_pred Eeccchhhh
Q 025475 120 IDKGTLDSL 128 (252)
Q Consensus 120 ~~~~~l~~~ 128 (252)
+|+.+++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999997753
No 190
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.76 E-value=5e-08 Score=79.84 Aligned_cols=110 Identities=21% Similarity=0.354 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCCCCC-CeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDE-SFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~-~~D~ 118 (252)
.+.+.+||-+|.|.|..+..++++. ..+++.||+++.+++.|++.+. ..++++++..|...+..-... +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 4567799999999999999999885 5689999999999999999873 246899999999876322333 8999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+....-... ....--...+++.+.+.|++||.+++..
T Consensus 154 Ii~D~~dp~~---~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDG---PAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTS---CGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCC---CcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9986432111 0011224788999999999999999865
No 191
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.3e-08 Score=74.30 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=66.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.++|+|||.|-+.......+...++|+|++|++++.++++..... ++.++++|+.+.. +..+.||.++.+..+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCC
Confidence 577999999999999977766667789999999999999999986644 6799999999987 6678899999998654
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=98.74 E-value=5.1e-08 Score=79.91 Aligned_cols=96 Identities=11% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
.+.+.+||-+|.|.|..++.++++.. +|+.||+++.+++.+++.+.. .|+++++.. ..+...++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEE
Confidence 45667999999999999999999964 999999999999999996632 356777652 2111236899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ....+.+.+++.|+|||.++...
T Consensus 145 vDs~------------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 145 CLQE------------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EcCC------------CChHHHHHHHHhcCCCcEEEECC
Confidence 8632 22567788999999999998864
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.3e-08 Score=75.20 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=84.8
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcC------------CCCCeE
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEE------------IPQLKY 100 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~--~~~v~~vD~s~~~i~~a~~~~~~------------~~~v~~ 100 (252)
+..+.+.|...+.|+.+.||+|+|+|.++..++.. + ....+|+|.-++.++.+++++.. .+++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 35566777778899999999999999999999855 3 22449999999999999998732 236788
Q ss_pred EEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 101 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 101 ~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.+|..... ....+||.|.+.. ...+..+++...|++||.+++..
T Consensus 149 vvGDgr~g~-~e~a~YDaIhvGA-------------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGY-AEQAPYDAIHVGA-------------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccC-CccCCcceEEEcc-------------CccccHHHHHHhhccCCeEEEee
Confidence 999998875 4667899999752 22334556667799999998844
No 194
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=8.9e-08 Score=73.95 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=79.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC--CCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED--ESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~--~~~D~v~~~~ 123 (252)
.+.++||+-+|+|.++...+++|...++.||.+..++...+++.+.. .+++++..|......... ++||+|++..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 36799999999999999999999889999999999999999998543 368888888875421122 2599999998
Q ss_pred chhhhcCCCCChhhHHHHHHH--HHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGE--VSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~--~~~~L~~gG~l~i~~ 159 (252)
+++.= .-+....+.. -..+|+|+|.+++-.
T Consensus 123 Py~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKG------LLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 87721 1222333333 457899999988744
No 195
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.72 E-value=2.7e-07 Score=75.50 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=86.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcC--CCCC-eEEEccccCCCCCC--CCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEE--IPQL-KYLQMDVRDMSFFE--DESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~~a~~~~~~--~~~v-~~~~~d~~~~~~~~--~~~~D~v~ 120 (252)
.+.+|||+.||.|......+... ...+...|+|+..++.+++.++. ..++ ++.++|+++...+. ....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 44599999999999988888763 35899999999999999998865 3455 99999998864322 34579999
Q ss_pred eccchhhhcCCCCChh-hHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++.++.+ ++. .....+.-+.+++.|||+++.+.
T Consensus 215 VsGL~ElF-----~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELF-----PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhC-----CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99999988 443 45667999999999999998765
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.4e-07 Score=76.77 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=75.3
Q ss_pred eeeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC
Q 025475 31 DWYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS 109 (252)
Q Consensus 31 ~~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~ 109 (252)
.|+.....+..++... +.++..|||||+|.|.++..+++.+. +|+++|+++.++...++.....++++++.+|+...+
T Consensus 11 nFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d 89 (259)
T COG0030 11 NFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD 89 (259)
T ss_pred ccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc
Confidence 3444444455555443 44567999999999999999999965 799999999999999999876678999999999887
Q ss_pred CCCCC-CeeEEEeccchhh
Q 025475 110 FFEDE-SFDAVIDKGTLDS 127 (252)
Q Consensus 110 ~~~~~-~~D~v~~~~~l~~ 127 (252)
++.- .++.|++|-+++-
T Consensus 90 -~~~l~~~~~vVaNlPY~I 107 (259)
T COG0030 90 -FPSLAQPYKVVANLPYNI 107 (259)
T ss_pred -chhhcCCCEEEEcCCCcc
Confidence 5432 6889999887653
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.69 E-value=8e-08 Score=83.38 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+|||++||+|..+..++.. +..+|+++|+++.+++.++++++. ..++++.+.|+..+. .....||+|+++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l-~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL-HEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH-hhcCCCCEEEECCC--
Confidence 358999999999999999775 445899999999999999998843 335678889987653 11457999998642
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....++..+.+.+++||.++++.
T Consensus 135 ---------Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ---------GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---------CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 233557777677789999999973
No 198
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.68 E-value=1.5e-07 Score=78.09 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+..|||+|||+|.++...+..|..+|++|+-| +|.+.|+...+.+ .+|.++.+.+++.. + .++.|++++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEeccch
Confidence 566899999999999999999998899999974 5888888887653 37889999999886 4 4579999986542
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.-+ . +...+.. .-.+++.|+|.|.++=
T Consensus 254 ~mL-~---NERMLEs-Yl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 254 YML-V---NERMLES-YLHARKWLKPNGKMFP 280 (517)
T ss_pred hhh-h---hHHHHHH-HHHHHhhcCCCCcccC
Confidence 222 1 2233333 3345699999998753
No 199
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=2.1e-07 Score=78.70 Aligned_cols=112 Identities=24% Similarity=0.239 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCe
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+..+......|.+|+|+-||.|.++..++..|..+|+++|++|.+++.+++++.-+ +.+..+++|..+.. ...+.+
T Consensus 179 R~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~a 257 (341)
T COG2520 179 RARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVA 257 (341)
T ss_pred HHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccC
Confidence 44455666779999999999999999999998656999999999999999998532 24889999999986 333789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|-|+++.. ....+++..+.+.+++||.+-..+....
T Consensus 258 DrIim~~p-----------~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 258 DRIIMGLP-----------KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CEEEeCCC-----------CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 99998754 4445677788888899999887765543
No 200
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.64 E-value=7e-07 Score=75.46 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=85.0
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeE--EEccccCCCC-
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYE--EIPQLKY--LQMDVRDMSF- 110 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~--~~~d~~~~~~- 110 (252)
..|...++++..++|+|||+|.-+..+++. + ...++++|+|.++++.+.+++. ..+.+++ +++|..+...
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh
Confidence 345566778889999999999987776654 2 3479999999999999999887 3455554 7888866421
Q ss_pred C----CCCCeeEEEecc-chhhhcCCCCChhhHHHHHHHHHH-cccCCcEEEEEE
Q 025475 111 F----EDESFDAVIDKG-TLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLIT 159 (252)
Q Consensus 111 ~----~~~~~D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~l~i~~ 159 (252)
+ ......+++..+ ++..+ .++....+|+++.+ .|+|||.+++..
T Consensus 148 l~~~~~~~~~r~~~flGSsiGNf-----~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 148 LKRPENRSRPTTILWLGSSIGNF-----SRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccccccCCccEEEEeCccccCC-----CHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 122356666554 67777 77888999999999 999999988743
No 201
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.64 E-value=3.3e-07 Score=76.21 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=77.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEE--Ecc-ccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYL--QMD-VRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~--~~d-~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.+|||+|||+|..+..+.+. ...+++++|.|+.|++.++..+...+..... ..+ ..+. ....+.|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF--LPFPPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc--ccCCCCcEEEEeh
Confidence 3459999999999876665554 2558999999999999999987654322111 111 1111 1222349999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+|..+ +...+..+++.+.+.+++ .|++++.+.|..
T Consensus 111 ~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 111 VLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 98888 447788888888887766 999999887754
No 202
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.63 E-value=1.4e-07 Score=74.12 Aligned_cols=131 Identities=21% Similarity=0.216 Sum_probs=87.8
Q ss_pred CCCCChhhHHHHhccCCCceeeeccchhhHHHHHhhCC------CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHH
Q 025475 11 YNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIP------TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVA 84 (252)
Q Consensus 11 ~~~~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~ 84 (252)
+..|..+.|...-...+..-.-..+..-+.+++..... ...++|||||=+....... .+.-+|+.+|+++.
T Consensus 7 ~~~GGl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~- 83 (219)
T PF11968_consen 7 EALGGLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ- 83 (219)
T ss_pred HHccCHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC-
Confidence 34455555554333322222222233344555544421 2359999999754433322 23447999999773
Q ss_pred HHHHHHhhcCCCCCeEEEccccCCC--CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcE-----EEE
Q 025475 85 IDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGI-----YML 157 (252)
Q Consensus 85 i~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-----l~i 157 (252)
.-.+.++|+.+.| ..+++.||+|+++.+|.++ |++..+-.+++++++.|+++|. |++
T Consensus 84 ------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl 147 (219)
T PF11968_consen 84 ------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFL 147 (219)
T ss_pred ------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC----CCHHHHHHHHHHHHHHhCCCCccCcceEEE
Confidence 3467899998876 1246789999999999999 7788999999999999999999 888
Q ss_pred EEc
Q 025475 158 ITY 160 (252)
Q Consensus 158 ~~~ 160 (252)
+.+
T Consensus 148 VlP 150 (219)
T PF11968_consen 148 VLP 150 (219)
T ss_pred EeC
Confidence 764
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.60 E-value=2.1e-07 Score=83.81 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=80.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCC-CCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~ 124 (252)
.+..+||+|||.|.++..++... ...++|+|+....+..+.+... +..|+.+++.|+..+. .++++++|.|+++++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 45689999999999999999884 5689999999988777766653 3458888888775432 157788999997543
Q ss_pred hhhhcCCCCChhhH--------HHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISA--------SQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.|.+..+ ..+++.+.++|++||.+.+.+-.
T Consensus 427 -------DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 427 -------DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred -------CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3222222 78899999999999999988743
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=2.7e-07 Score=74.53 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++...|||+|+|||.++..+++.|. +|+++|+++.|+...+++.++.+ ..+++.+|+...+ ++ .||.+|++.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P--~fd~cVsNl 131 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LP--RFDGCVSNL 131 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-Cc--ccceeeccC
Confidence 66778999999999999999999975 99999999999999999997654 6899999998775 33 699999976
Q ss_pred chh
Q 025475 124 TLD 126 (252)
Q Consensus 124 ~l~ 126 (252)
.+.
T Consensus 132 Pyq 134 (315)
T KOG0820|consen 132 PYQ 134 (315)
T ss_pred Ccc
Confidence 544
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.59 E-value=2.8e-07 Score=79.43 Aligned_cols=105 Identities=11% Similarity=0.184 Sum_probs=71.9
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCC----------C-----C
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF----------E-----D 113 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~----------~-----~ 113 (252)
.+|||++||+|.++..+++.. .+|+++|+++.+++.+++++.. ..+++++++|+.+...- . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888764 5899999999999999998854 33789999998764210 0 1
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
..||+|+...+- . ....++++.+. ++++.++++. .|..-.+.+
T Consensus 278 ~~~d~v~lDPPR--~-------G~~~~~l~~l~---~~~~ivYvsC--~p~tlaRDl 320 (353)
T TIGR02143 278 YNCSTIFVDPPR--A-------GLDPDTCKLVQ---AYERILYISC--NPETLKANL 320 (353)
T ss_pred CCCCEEEECCCC--C-------CCcHHHHHHHH---cCCcEEEEEc--CHHHHHHHH
Confidence 237999986541 1 11234444443 3677777654 344444444
No 206
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.57 E-value=3e-08 Score=86.53 Aligned_cols=96 Identities=22% Similarity=0.376 Sum_probs=66.8
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCC-----HHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDIS-----SVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s-----~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+||+|||+|+++..+++++ |+.+-++ +..++.|.++- .+. .+-......+| +++++||+|-|..|+.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleRG--vpa-~~~~~~s~rLP-fp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALERG--VPA-MIGVLGSQRLP-FPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhcC--cch-hhhhhcccccc-CCccchhhhhcccccc
Confidence 79999999999999999984 4444333 34444444431 111 11122235677 9999999999998876
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. . +.-..+|-++.|+|+|||+++++..
T Consensus 193 ~W-----~-~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 193 PW-----H-PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cc-----h-hcccceeehhhhhhccCceEEecCC
Confidence 54 2 2224588999999999999988763
No 207
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.56 E-value=3.5e-07 Score=79.18 Aligned_cols=108 Identities=11% Similarity=0.227 Sum_probs=73.2
Q ss_pred hHHHHHhhCC-CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CC--
Q 025475 39 LRPFVRKYIP-TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FE-- 112 (252)
Q Consensus 39 l~~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~-- 112 (252)
+...+...+. .+.++||++||+|.++..++.. ..+|+++|+++.+++.+++++.. ..+++++++|+.+... +.
T Consensus 195 l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~ 273 (362)
T PRK05031 195 MLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGV 273 (362)
T ss_pred HHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc
Confidence 3344444443 2357999999999999988776 45899999999999999998743 3478999999876421 10
Q ss_pred ------------CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 113 ------------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 113 ------------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..+||+|++..+-. ....++++.+.+ +++.++++.
T Consensus 274 ~~~~~~~~~~~~~~~~D~v~lDPPR~---------G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 274 REFNRLKGIDLKSYNFSTIFVDPPRA---------GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred ccccccccccccCCCCCEEEECCCCC---------CCcHHHHHHHHc---cCCEEEEEe
Confidence 12589999876521 112344444433 567766654
No 208
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.56 E-value=8.1e-07 Score=72.98 Aligned_cols=111 Identities=21% Similarity=0.305 Sum_probs=81.5
Q ss_pred hhHHHHHhhCC------CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----------------
Q 025475 38 ALRPFVRKYIP------TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------------- 94 (252)
Q Consensus 38 ~l~~~~~~~~~------~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~----------------- 94 (252)
.+...|.+..+ .+.+||-.|||.|+++..++..|+ .+.|.|.|--|+-..+-.+..
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 34444555443 245999999999999999999998 899999999886544332110
Q ss_pred -------------------------CCCCeEEEccccCCCCCC--CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHH
Q 025475 95 -------------------------IPQLKYLQMDVRDMSFFE--DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSR 147 (252)
Q Consensus 95 -------------------------~~~v~~~~~d~~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 147 (252)
..++....+|+.+.-... .++||+|+..+.++.. .+.-..++.|.+
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-------ENIIEYIETIEH 190 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-------HHHHHHHHHHHH
Confidence 013556666666653112 3689999998777776 899999999999
Q ss_pred cccCCcEEE
Q 025475 148 LLKPGGIYM 156 (252)
Q Consensus 148 ~L~~gG~l~ 156 (252)
+|||||+.+
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999655
No 209
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.54 E-value=1.3e-07 Score=81.08 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=93.9
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeE
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+...+.++..++|+|||.|.....+...+...++++|.++..+.++...... .....++.+|+.+.+ +++..||.
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~ 181 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDG 181 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCc
Confidence 34444567778999999999999999888766999999999888777776532 123445888999998 89999999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.+..+..|. ++....+.+++|+++|||+.++.++.
T Consensus 182 v~~ld~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 182 VRFLEVVCHA-------PDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEEeecccC-------CcHHHHHHHHhcccCCCceEEeHHHH
Confidence 9999999999 99999999999999999999987653
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.52 E-value=3e-07 Score=79.42 Aligned_cols=98 Identities=9% Similarity=0.163 Sum_probs=79.0
Q ss_pred CcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+.||+|..+..++.. |..+|+++|+++.+++.++++++.+ .++++.+.|+..........||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999987 5679999999999999999998543 3578889998876312235799999864 1
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....++..+.+.+++||.++++.
T Consensus 124 ---------Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---------GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---------CCcHHHHHHHHHhcccCCEEEEEe
Confidence 233468888899999999999974
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.49 E-value=2.6e-07 Score=72.15 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=66.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CC--CCCeeE
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FE--DESFDA 118 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~--~~~~D~ 118 (252)
+.+|||+||++|.++..+++++ ..+++|+|+.+. ...+++..+++|+.+.. . +. ...+|+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 4699999999999999999997 569999999875 11134555566655421 1 11 268999
Q ss_pred EEeccchhhhcCCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 119 VIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 119 v~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
|++........... .........+.-+...|++||.+++..+..+..
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 99988322110000 011334555566678899999999888765443
No 212
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=2.3e-07 Score=75.50 Aligned_cols=113 Identities=26% Similarity=0.353 Sum_probs=87.7
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+...+++... +.+..++|+|||.|.....- ....++++|++...+..+++.- ......+|+...+ +.+.+|
T Consensus 34 p~v~qfl~~~-~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p-~~~~s~ 104 (293)
T KOG1331|consen 34 PMVRQFLDSQ-PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLP-FREESF 104 (293)
T ss_pred HHHHHHHhcc-CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccCC----CceeehhhhhcCC-CCCCcc
Confidence 4455555554 55889999999998754321 2346999999998887776542 2267889999998 888999
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|.+++..++||+ .....+..+++++.|.|+|||...+..+..
T Consensus 105 d~~lsiavihhl----sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 105 DAALSIAVIHHL----STRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ccchhhhhhhhh----hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999999998 344677899999999999999987776653
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.44 E-value=1.3e-06 Score=68.11 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=75.2
Q ss_pred CCCCC-cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSS-RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~-~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++... +++|+|+|.|.-+..++-.. ..+++.+|.+..-+...+..... ..|+++++..+++ . ....+||+|++.
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aR 122 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTAR 122 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEE
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEee
Confidence 34333 89999999999888877653 55899999998776666665532 3589999999998 3 456789999986
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ .....+++-+..++++||.+++.-
T Consensus 123 Av-----------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 123 AV-----------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SS-----------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh-----------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 54 566778888999999999988754
No 214
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.42 E-value=7e-07 Score=74.57 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=63.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC---CCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED---ESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~---~~~D~v~~~ 122 (252)
.++..++|.+||.|..+..+++.. ..+|+|+|.++.+++.+++++....++++++.|+.++..... .++|.|++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 466799999999999999999884 468999999999999999887554579999999987642222 279999987
Q ss_pred cc
Q 025475 123 GT 124 (252)
Q Consensus 123 ~~ 124 (252)
..
T Consensus 98 LG 99 (296)
T PRK00050 98 LG 99 (296)
T ss_pred CC
Confidence 54
No 215
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=7.4e-06 Score=70.65 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=84.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCC-C-CCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFF-E-DESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~-~-~~~~D~v~ 120 (252)
.++.+|||++++.|.-+..+++.. ...|+++|+++.=++..+++++..+ ++..++.|....+.. . .++||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 467899999999999999988873 2246999999999999999987654 677888887765422 2 23599999
Q ss_pred eccchhhhcCC--------CCChh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCG--------TNAPI-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~--------~~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+..++.-...- ...+. -..++|..+.++|||||.|+.++++
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 88654422110 01111 1377889999999999999999876
No 216
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.38 E-value=3e-06 Score=71.93 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=80.6
Q ss_pred eccchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhhc--C--CCCC
Q 025475 33 YQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKYE--E--IPQL 98 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~--------~~~~v~~vD~s~~~i~~a~~~~~--~--~~~v 98 (252)
+.....+..++.+.+. ++.+|+|.+||+|.+...+.+. ...+++|+|+++.++..++.++. . ....
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 3344566677666643 4458999999999998888762 34589999999999999887652 1 1234
Q ss_pred eEEEccccCCCCCC-CCCeeEEEeccchhhhcCC--------------CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 99 KYLQMDVRDMSFFE-DESFDAVIDKGTLDSLMCG--------------TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 99 ~~~~~d~~~~~~~~-~~~~D~v~~~~~l~~~~~~--------------~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+...|....+... ...||+|+++.++....+. .+....-..++..+.+.|++||++.++.+
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 58888876554233 5789999999876543010 01111224578899999999999777663
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3.4e-06 Score=66.17 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~D 117 (252)
+.++.+|+|+||-+|.+++.+++.. ...|+++|+.|-- -.+++.++++|+++... +....+|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 6788999999999999999998883 3359999997631 22479999999987541 3445579
Q ss_pred EEEeccch--------hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 118 AVIDKGTL--------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 118 ~v~~~~~l--------~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+|++...- +|. ....-....+.-+..+|++||.+++..+.....
T Consensus 114 vV~sD~ap~~~g~~~~Dh~----r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHA----RSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred eEEecCCCCcCCCccccHH----HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 99976543 332 111223455666778999999999988765543
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=1e-05 Score=64.15 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-----CCCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-----FFEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-----~~~~~~~D~ 118 (252)
.++++||+|.-||..+..++.. ..++++++|+++...+.+.+..+.. ..|+++++...+.- ....++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4569999999999988888776 2569999999999999998776532 36889998876642 245688999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++... ..........++.+++++||.+++-
T Consensus 153 aFvDa----------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA----------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc----------chHHHHHHHHHHHhhcccccEEEEe
Confidence 99742 2345568899999999999999873
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.34 E-value=3.4e-06 Score=68.88 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=71.6
Q ss_pred cEEEEcccC--cHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCC--CeEEEccccCCCC----------CCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRDMSF----------FEDES 115 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~--v~~~~~d~~~~~~----------~~~~~ 115 (252)
..||+|||- -...-.+++. ..++|+.||.+|-.+..++..+...++ ..++++|+++... +.-..
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~r 150 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDR 150 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCC
Confidence 899999993 2233334433 356999999999999999999877666 8999999998531 11123
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.=.|++..++||+ ++.+++..++..+++.|.||++|.++....
T Consensus 151 PVavll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 151 PVAVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp --EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CeeeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 3467788899998 444789999999999999999999988654
No 220
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=3.6e-06 Score=64.93 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=81.2
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCC
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+.+..+- -.+++|||+|+|+|..+...+..|...++..|+.|..+...+-+.+.+. .+.+...|... .+..
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~ 142 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPA 142 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcc
Confidence 444444442 2677999999999999999999998899999999988888887775544 56777776654 2346
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
||+++...+++.- ..-.+++.-..++...|-.+++.++.++.
T Consensus 143 ~Dl~LagDlfy~~-------~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 143 FDLLLAGDLFYNH-------TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred eeEEEeeceecCc-------hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 9999998876643 45556666334444445566666665543
No 221
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.32 E-value=1.5e-06 Score=66.52 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
..+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+++ .+..+++++.+|+.+.. + ...|+|+|-..=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHHhhHHh
Confidence 58999999999999988887 669999999999999999995 45568999999999987 5 468999884321111
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
=.+.....++.+...|+.++.++=
T Consensus 110 -----i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 -----IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -----hcccccHHHHHHHHHhhcCCcccc
Confidence 114556778888889999998764
No 222
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.32 E-value=7.3e-07 Score=67.77 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCC-CCCCC-eeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSF-FEDES-FDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~~-~D~v~~~~~l~ 126 (252)
.|+|+.||.|..+..+++.. .+|+++|+++..++.++.++.-.+ +++++++|..+... ..... +|+|+++.++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 69999999999999999984 489999999999999999986543 79999999987631 22222 89999987543
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.31 E-value=6.2e-06 Score=68.30 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=64.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC---CCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED---ESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~---~~~D~v~~~~~ 124 (252)
.++..|+|+|+|.|.++..+++.+ .+++++|+++.+++..++.+...++++++.+|+.++. ... .....|+++.+
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-LYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-GGGHCSSSEEEEEEEET
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-cHHhhcCCceEEEEEec
Confidence 367799999999999999999997 6999999999999999998876679999999999886 332 45678888776
Q ss_pred h
Q 025475 125 L 125 (252)
Q Consensus 125 l 125 (252)
+
T Consensus 107 y 107 (262)
T PF00398_consen 107 Y 107 (262)
T ss_dssp G
T ss_pred c
Confidence 5
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=7.6e-06 Score=76.78 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc------C-------------------------------------CCcEEEEeCCHHH
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD------G-------------------------------------YEDIVNIDISSVA 84 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~------~-------------------------------------~~~v~~vD~s~~~ 84 (252)
.++..++|.+||+|.+....+.. | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45679999999999999887652 0 1258999999999
Q ss_pred HHHHHHhhcCCC---CCeEEEccccCCCC-CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcc---cCCcEEEE
Q 025475 85 IDMMKMKYEEIP---QLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL---KPGGIYML 157 (252)
Q Consensus 85 i~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L---~~gG~l~i 157 (252)
++.|+.++...+ .+++.++|+.+++. ...+++|+|++|.++..- .....+...+.+.+.+.+ .+|+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r---~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER---LGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc---cCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999986432 58899999988752 223579999999886532 112234444444444444 38888888
Q ss_pred EEcCC
Q 025475 158 ITYGD 162 (252)
Q Consensus 158 ~~~~~ 162 (252)
.+...
T Consensus 346 lt~~~ 350 (702)
T PRK11783 346 FSSSP 350 (702)
T ss_pred EeCCH
Confidence 77543
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.31 E-value=1.8e-05 Score=62.62 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=82.7
Q ss_pred eeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE
Q 025475 30 FDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102 (252)
Q Consensus 30 ~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~ 102 (252)
..|-...+-|...+..- +.++.+||-+|+.+|.....+... | .+.|++|+.|+...+..-...+.-+|+-.+.
T Consensus 49 R~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl 128 (229)
T PF01269_consen 49 RVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPIL 128 (229)
T ss_dssp EEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEE
T ss_pred eecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeee
Confidence 45655555666655443 468889999999999999988887 4 5689999999965444433333336888889
Q ss_pred ccccCCCCC--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 103 MDVRDMSFF--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 103 ~d~~~~~~~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|++.+..+ .-+..|+|++.-. .+.+.+-++.++...||+||.++++-
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDVA---------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCChHHhhcccccccEEEecCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999875422 2347999997643 33677778889999999999988865
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.30 E-value=1.5e-05 Score=59.73 Aligned_cols=101 Identities=30% Similarity=0.465 Sum_probs=72.9
Q ss_pred EEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCC--CeEEEccccC--CCCCCC-CCeeEEEeccch
Q 025475 53 VLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRD--MSFFED-ESFDAVIDKGTL 125 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~--v~~~~~d~~~--~~~~~~-~~~D~v~~~~~l 125 (252)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...+... .+ +.. ..||++.....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-FEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-CCCCCceeEEeeeeeh
Confidence 999999999976 3333321 3789999999999986655432111 5788888776 44 555 489999444445
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++. . ....+.++.+.++++|.+++......
T Consensus 130 ~~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLL-------P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcC-------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 554 2 88899999999999999998876543
No 227
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.7e-06 Score=74.03 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=82.2
Q ss_pred HHHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC--CCC
Q 025475 41 PFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF--EDE 114 (252)
Q Consensus 41 ~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~--~~~ 114 (252)
..+..++. ++.+++|+=||.|.++..++.. ..+|+|+|+++.+++.|+++.+.+ .|++++.++.++.... ...
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 33444443 5569999999999999999977 459999999999999999998654 3799999999887522 234
Q ss_pred CeeEEEeccchhhhcCCCCChhhHH-HHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISAS-QMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~-~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+|+|+...+ ..... .+++.+.+ ++|..+++++. .|..-.+.+
T Consensus 362 ~~d~VvvDPP----------R~G~~~~~lk~l~~-~~p~~IvYVSC--NP~TlaRDl 405 (432)
T COG2265 362 KPDVVVVDPP----------RAGADREVLKQLAK-LKPKRIVYVSC--NPATLARDL 405 (432)
T ss_pred CCCEEEECCC----------CCCCCHHHHHHHHh-cCCCcEEEEeC--CHHHHHHHH
Confidence 7899998643 22223 44555444 57777777755 344433333
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.25 E-value=6.9e-06 Score=74.73 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=56.6
Q ss_pred CCcEEEEcccCcHhHHHHHHcC---------CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCC----CCCCC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG---------YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMS----FFEDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~---------~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~----~~~~~ 114 (252)
..+|||.|||+|.+...++... ...++|+|+++.++..++.++...+ .+.+.+.|..... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999998887642 1478999999999999998875433 3455555543221 01125
Q ss_pred CeeEEEeccchhh
Q 025475 115 SFDAVIDKGTLDS 127 (252)
Q Consensus 115 ~~D~v~~~~~l~~ 127 (252)
.||+|+.|.++.-
T Consensus 112 ~fD~IIgNPPy~~ 124 (524)
T TIGR02987 112 LFDIVITNPPYGR 124 (524)
T ss_pred cccEEEeCCCccc
Confidence 7999999998664
No 229
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=7.7e-06 Score=65.20 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred hHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCC-CeEEEccccCCCC-CCCC
Q 025475 39 LRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQ-LKYLQMDVRDMSF-FEDE 114 (252)
Q Consensus 39 l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~-v~~~~~d~~~~~~-~~~~ 114 (252)
|...+..+ ..++.++||+|+.||.++..++++|..+|+++|..-..+..--++ .++ +.+...|++.+.. .-.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCHHHccc
Confidence 44445544 346779999999999999999999988999999987655543332 233 3455566666531 1123
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
..|++++.-.+..+ ..+|..+..+++++|.++..
T Consensus 144 ~~d~~v~DvSFISL----------~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 144 KPDLIVIDVSFISL----------KLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CCCeEEEEeehhhH----------HHHHHHHHHhcCCCceEEEE
Confidence 68899987655444 78899999999999987664
No 230
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=4.1e-06 Score=64.48 Aligned_cols=181 Identities=12% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHH----H--HHHHhh--cCCCCCeEEEccccCCCCCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAI----D--MMKMKY--EEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i----~--~a~~~~--~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
++++.+|+|+=.|.|.++..+... | .+.|++.-..+... . ..+... ....|++.+-.+...+. +.+..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence 578899999999999999999886 3 33566554433211 1 111111 11125555555555553 44567
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh-hhhhhccc-cccceeEEEEEecCCCCCCCCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHLKW-KVYNWKIELYIIARPGFEKPGG 194 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (252)
|+++.+...|-+-.-..++....++...+++.|||||.+.+.++.... .....-.. ...+--.........||.+..+
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 888876665544222223566788899999999999999998865221 11100000 0000000011122356666544
Q ss_pred CCCCCcccCCCcccCCCCCCccccccCCCCceEEEEEEecC
Q 025475 195 CSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMN 235 (252)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~K~~ 235 (252)
+.....+-.....|.-++..+...-.|.|-++||+
T Consensus 204 ------S~ilaNp~D~~~i~v~dp~~rGetDrf~~kF~Kp~ 238 (238)
T COG4798 204 ------SEILANPDDPRGIWVFDPTIRGETDRFTLKFRKPA 238 (238)
T ss_pred ------ehhhcCCCCCCceeecCccccCccceeEEEeecCC
Confidence 33334444456667777888888889999999984
No 231
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.23 E-value=2.5e-07 Score=71.80 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.+.++||+|+|.|..+..++.. ..+|++.++|..|..+.+..- +-+....+.. ..+-++|+|.|.+.++--
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~-------ynVl~~~ew~-~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN-------YNVLTEIEWL-QTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC-------Cceeeehhhh-hcCceeehHHHHHHHHhh
Confidence 3459999999999999999887 458999999999998887652 1122222232 223369999999988866
Q ss_pred cCCCCChhhHHHHHHHHHHcccC-CcEEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKP-GGIYMLIT 159 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~-gG~l~i~~ 159 (252)
.++-++++.++.+|+| +|.++++-
T Consensus 183 -------~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 183 -------FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred -------cChHHHHHHHHHHhccCCCcEEEEE
Confidence 6889999999999999 89887754
No 232
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=5.7e-06 Score=65.76 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=74.0
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCC-eeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDES-FDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~-~D~v~~~~~l 125 (252)
+.+++|+|+|.|.-+..++-. ...+++.+|....=+...+..... .+|++++++.++++. .+.. ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehc-
Confidence 579999999999988887733 344799999997766666555433 458999999999986 2223 999998643
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....+++-+..++++||.+++.-
T Consensus 145 ----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----------cchHHHHHHHHHhcccCCcchhhh
Confidence 566777888899999999876533
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.19 E-value=6.8e-06 Score=65.21 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------CCCCCeEEEccccCCCCCC--
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------EIPQLKYLQMDVRDMSFFE-- 112 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~-----------~~~~v~~~~~d~~~~~~~~-- 112 (252)
+.++...+|+|||.|.....++.. +..+.+|||+.+...+.|+.... ....+++..+|+.+.+ +.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~-~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD-FVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-HHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-hHhh
Confidence 456779999999999988877655 56579999999988877765331 1235778888877643 11
Q ss_pred -CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 113 -DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 113 -~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
-...|+|++++.+-. ++....+.+...-||+|-+++.
T Consensus 119 ~~s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWSDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hhcCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 135899999876432 4455556777778888877654
No 234
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.19 E-value=2.1e-05 Score=67.30 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=80.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCC---------------------------------C-------cEEEEeCCHHHHHH
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGY---------------------------------E-------DIVNIDISSVAIDM 87 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~---------------------------------~-------~v~~vD~s~~~i~~ 87 (252)
.++..++|.-||+|.+....+..+. . .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4556899999999999999887741 1 27799999999999
Q ss_pred HHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChh-hHHHHHHHHHHcccCCcEEEEEEc
Q 025475 88 MKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 88 a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+.+....+ .|++.++|+.++.. +-+.+|+|++|.++---.-+...-. -...+.+.+.+.++.-+..++++.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE-PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999986533 69999999999862 2278999999998653211111111 334555666677776677777663
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.18 E-value=3.1e-05 Score=61.45 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=77.0
Q ss_pred EEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 53 VLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
|.|+||.-|.+...+++.| ..+++++|+++..++.|+++++.. .++++..+|..+.- -+.+..|+|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l-~~~e~~d~ivIAGM---- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL-KPGEDVDTIVIAGM---- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc-CCCCCCCEEEEecC----
Confidence 6899999999999999998 557999999999999999998653 36899999976642 12233789988775
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.-.-..+++.+....++....+++........-..++
T Consensus 76 -----GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L 112 (205)
T PF04816_consen 76 -----GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL 112 (205)
T ss_dssp ------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH
T ss_pred -----CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH
Confidence 2345678888888877776688887776666555555
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.18 E-value=1e-05 Score=68.26 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.++||+||++|.++..++++|. +|++||.++- ...+...++|...+.|..... ...+.+|.++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV-- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc--
Confidence 35788999999999999999999987 9999996542 222334568899998887764 22678999999765
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPG 152 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~g 152 (252)
..+..+++-+.+.|..|
T Consensus 280 ---------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---------cCHHHHHHHHHHHHhcC
Confidence 45556667777777654
No 237
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.14 E-value=2e-05 Score=66.42 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh-----c----CCCCCeEEEccccCCCCCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY-----E----EIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~-----~----~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
++...+||-+|.|.|--.+.+.+.. ..+++.||++|.|++.++.+. + ..++++++..|+.++..-..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3455689999999999999999985 779999999999999998542 1 13589999999988753345689
Q ss_pred eEEEeccchhhhcCCCCChh----hHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPI----SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|.|+.... .+.++. .-..+..-+.+.|+++|.+++..
T Consensus 367 D~vIVDl~------DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLP------DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCC------CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99997532 111111 12556677889999999999865
No 238
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.10 E-value=1.4e-05 Score=66.86 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=84.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-CCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF-FEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~-~~~~~~D~v~~ 121 (252)
..++.+|||++++.|.-+..+++.- .++++++|+++.-+...+.+....+ ++.....|...... .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 3567799999999999998888872 5699999999999999988886544 67777777776521 23346999998
Q ss_pred ccchhhhcCCCCChh---------------hHHHHHHHHHHcc----cCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPI---------------SASQMLGEVSRLL----KPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~L----~~gG~l~i~~~~ 161 (252)
.....-...-..+++ ...++|+.+.+.+ +|||+++.+++.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 765433211111111 1367889999999 999999999875
No 239
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.07 E-value=6.1e-05 Score=59.09 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=83.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-CCCCCeEEEccccCC-CCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-~~~~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l 125 (252)
.++.+||.+|-|-|.....+.+....+-+.++..|..+++.+..-- +..+|.+..+--++. +.++++.||-|+-.-.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 4678999999999999999998875577889999999999988753 234677776655543 23678889999976655
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+. ++...+.+.+.++|||+|.+-...
T Consensus 180 e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 666 899999999999999999876543
No 240
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.05 E-value=1.5e-05 Score=68.86 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=57.0
Q ss_pred hHHHHHhhCCC-CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-----
Q 025475 39 LRPFVRKYIPT-SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF----- 110 (252)
Q Consensus 39 l~~~~~~~~~~-~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~----- 110 (252)
+...+...++. +.++||+-||.|.++..++... .+|+|||+++.+++.|++++.. ..+++++.++..++..
T Consensus 185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp HHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS
T ss_pred HHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhh
Confidence 34444455442 2389999999999999999984 5999999999999999999854 3489999877654321
Q ss_pred ----------CCCCCeeEEEeccc
Q 025475 111 ----------FEDESFDAVIDKGT 124 (252)
Q Consensus 111 ----------~~~~~~D~v~~~~~ 124 (252)
.....+|+|+..++
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCC
Confidence 11236899997654
No 241
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=0.00014 Score=56.49 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=88.2
Q ss_pred ceeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE
Q 025475 29 SFDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102 (252)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~ 102 (252)
...|-...+.+...+..- ++++.+||-+|+.+|.....+... +.+.+++|++|+...+..-..+..-+|+--+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL 130 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPIL 130 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeee
Confidence 345655555555554433 468889999999999998888887 45689999999987665555555557888888
Q ss_pred ccccCCCCC--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 103 MDVRDMSFF--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 103 ~d~~~~~~~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+.....+ --+..|+|+..-. .+.+..-+..++...|++||+++++-
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~DVA---------Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQDVA---------QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cccCCcHHhhhhcccccEEEEecC---------CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 998775421 2245899986432 44666777889999999999877754
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.84 E-value=8.9e-05 Score=55.42 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=54.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHH-----cCCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCCCCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVK-----DGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~-----~~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~D 117 (252)
.+..+|+|+|||.|.++..++. ....+|+++|.++..++.++++.... .++++...++.+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCe
Confidence 3566999999999999999998 44559999999999999988876432 24555555554432 245677
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+++.-++
T Consensus 102 ~~vgLHa 108 (141)
T PF13679_consen 102 ILVGLHA 108 (141)
T ss_pred EEEEeec
Confidence 7776543
No 243
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.81 E-value=0.00016 Score=58.49 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=73.8
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCC
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 115 (252)
.+.+.+...+++..+|+|+|||.--++....... ...++|+|++..+++..+..+... .+.++...|+..-+ +...
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~--~~~~ 171 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP--PKEP 171 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--TTSE
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--CCCC
Confidence 3444445556677899999999988888777653 459999999999999999887543 36777888887654 5668
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.|+.+..=+++.+ ..+.....++-+.++=.| .++|+.+
T Consensus 172 ~DlaLllK~lp~l-----e~q~~g~g~~ll~~~~~~--~~vVSfP 209 (251)
T PF07091_consen 172 ADLALLLKTLPCL-----ERQRRGAGLELLDALRSP--HVVVSFP 209 (251)
T ss_dssp ESEEEEET-HHHH-----HHHSTTHHHHHHHHSCES--EEEEEEE
T ss_pred cchhhHHHHHHHH-----HHHhcchHHHHHHHhCCC--eEEEecc
Confidence 9999999888888 222223334434443333 5555553
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00067 Score=52.21 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cccCCC-------CCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMS-------FFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~~~~-------~~~~~~~ 116 (252)
+.|+.+|||+||.+|.++.-..++ ..+.+.|||+-. +...+.+.++++ |+++.. .++....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 568889999999999999988877 256899999832 111124566666 676642 1466789
Q ss_pred eEEEeccchhhhcCCCCChhh----HHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 117 DAVIDKGTLDSLMCGTNAPIS----ASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
|+|++...-........+-.. ..+++.-....+.|+|.+++-.|.+..
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 999987543221111111111 123334445677899999998887544
No 245
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00029 Score=57.29 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-CCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~D~v~ 120 (252)
+.|+.+|+|-|.|+|+++..+++. + -++++.+|+.+.-.+.|++.++.. .++++..-|+..... ..+..+|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 568999999999999999999887 2 568999999998888888887542 389999999987652 3367899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCc-EEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG-IYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG-~l~i~~ 159 (252)
... ..+..++..++.+||.+| +++...
T Consensus 183 LDl------------PaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 183 LDL------------PAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred EcC------------CChhhhhhhhHHHhhhcCceEEecc
Confidence 742 566667777778888777 444433
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.74 E-value=0.00022 Score=58.90 Aligned_cols=103 Identities=18% Similarity=0.373 Sum_probs=65.7
Q ss_pred CCcEEEEcccCcHhHHHHHHc--C-CCcEEEEeCCHHHHHHHHHhhc-C---CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 50 SSRVLMVGCGNALMSEDMVKD--G-YEDIVNIDISSVAIDMMKMKYE-E---IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~--~-~~~v~~vD~s~~~i~~a~~~~~-~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.+|+=+|||.=-++..+... + ...++++|+++.+++.+++..+ . ..+++++.+|..+.. ..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEh
Confidence 359999999987666665543 3 3479999999999999998776 2 237899999998765 334579999876
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....- +.+...+++..+.+.+++|..+++-.
T Consensus 200 alVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGM------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhccc------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 44321 23688999999999999999998865
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00081 Score=53.20 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=91.2
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~ 115 (252)
...+.+.++.+.++.|+||--|.+...+.+.+ ...+++.|+++..++.|.++++... .++..++|....- ..++.
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~ 85 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDE 85 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCC
Confidence 34455666777789999999999999999987 6689999999999999999986544 5666667764432 34457
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhcccccccee
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWK 178 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~ 178 (252)
+|+|+..+.=- .-...++++-.+-|+.--++++.....+..-..++ ...+|.
T Consensus 86 ~d~ivIAGMGG---------~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L--~~~~~~ 137 (226)
T COG2384 86 IDVIVIAGMGG---------TLIREILEEGKEKLKGVERLILQPNIHTYELREWL--SANSYE 137 (226)
T ss_pred cCEEEEeCCcH---------HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH--HhCCce
Confidence 99998876422 44567777777777644577777666665555555 334444
No 248
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=2.1e-05 Score=58.39 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=46.6
Q ss_pred CeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 98 LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 98 v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.+++-...... |.+++.|+|++..+++|+ ..+.-..++++++|.|||||+|-++.+
T Consensus 31 vdlvc~As~e~~-F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESM-FEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhcc-CCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 444433334445 889999999999999999 777889999999999999999999764
No 249
>PRK10742 putative methyltransferase; Provisional
Probab=97.70 E-value=0.00012 Score=59.37 Aligned_cols=80 Identities=8% Similarity=-0.046 Sum_probs=62.5
Q ss_pred CCCC--cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----------CCCeEEEccccCCCCCCCC
Q 025475 48 PTSS--RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----------PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 48 ~~~~--~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-----------~~v~~~~~d~~~~~~~~~~ 114 (252)
+++. +|||+-+|.|..+..++..|. +|+++|-++.+....+..+... .+++++.+|..++..-...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 4544 899999999999999999987 5999999999888777766431 3578888888775322234
Q ss_pred CeeEEEeccchhhh
Q 025475 115 SFDAVIDKGTLDSL 128 (252)
Q Consensus 115 ~~D~v~~~~~l~~~ 128 (252)
+||+|++...+.|-
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 79999999877664
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=0.00018 Score=53.70 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred cEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC
Q 025475 52 RVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM 108 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~ 108 (252)
.++|+|||.|..+..++..+. .+++++|+++.+.+.++++++.. +++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999998863 37999999999999999987532 4677777776653
No 251
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00028 Score=58.52 Aligned_cols=115 Identities=18% Similarity=0.323 Sum_probs=75.7
Q ss_pred chhhHHHHHhhCCC------CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC------------
Q 025475 36 YSALRPFVRKYIPT------SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE------------ 94 (252)
Q Consensus 36 ~~~l~~~~~~~~~~------~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~------------ 94 (252)
+..+.+.+.+..++ +.+||-.|||.|+++..++..|. .+-|=+.|--|+=...-.+ +.
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 34456666666554 56999999999999999999985 5566677665542221111 00
Q ss_pred ---------------CC------------CCeEEEccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHH
Q 025475 95 ---------------IP------------QLKYLQMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEV 145 (252)
Q Consensus 95 ---------------~~------------~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~ 145 (252)
.| ...+..+|+.+.-. -..+.+|+|+..+.++.. .+.-..++.|
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~tI 282 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYIDTI 282 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHHHH
Confidence 01 12223345444320 123469999988777766 8899999999
Q ss_pred HHcccCCcEEEEE
Q 025475 146 SRLLKPGGIYMLI 158 (252)
Q Consensus 146 ~~~L~~gG~l~i~ 158 (252)
+.+|+|||+.+=.
T Consensus 283 ~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 283 YKILKPGGVWINL 295 (369)
T ss_pred HHhccCCcEEEec
Confidence 9999999997643
No 252
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.60 E-value=0.00039 Score=59.88 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=80.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC--CCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF--FEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~--~~~~~~D~v~~ 121 (252)
.++.||||+++-.|.-+..++.. +.+.|++.|.+..-++..+.++...+ +..+...|..+++. ++. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 47779999999999877777665 35689999999999988888886544 55666677766541 333 8999998
Q ss_pred ccchhhhcC--------CCC-------ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMC--------GTN-------APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~--------~~~-------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+..-... ... -..-.++++..+..++++||+|+.++++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 765442100 011 1122477888889999999999998875
No 253
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0001 Score=64.89 Aligned_cols=69 Identities=14% Similarity=0.356 Sum_probs=56.2
Q ss_pred hHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC
Q 025475 39 LRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM 108 (252)
Q Consensus 39 l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~ 108 (252)
+-..+..+ ++.+..++|+.||||.+++.+++. ...|+|+++++++++-|+.+...+ .|.+|+++-.++.
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 34445554 467789999999999999999887 669999999999999999988543 3899999966654
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.56 E-value=7.2e-05 Score=58.88 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC---CCCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS---FFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~---~~~~~~~D~v~~~ 122 (252)
....|+|.-||.|..+..++.++. .|+++|++|--+..|+.+++-.+ +|+++++|+.+.. ++....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 445899999999988888888865 89999999999999999986432 8999999998752 1333446788766
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGG 153 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG 153 (252)
.....- +....-+-.+...++|.|
T Consensus 173 ppwggp-------~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 PPWGGP-------SYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCc-------chhhhhhhhhhhhcchhH
Confidence 543322 444444444555555544
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0002 Score=53.66 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=78.3
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCC-CCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDM-SFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~-~~~~~~~~D~v~ 120 (252)
.+.+||++|.|. |..+..++-. ....|...|-++..++..++....+ ..+.....+...- .......||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 456899999995 4444444433 3558999999999999888765321 1121111111111 113445899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
+..++.+- +...++++.|.++|+|.|..++..+.+...-...+
T Consensus 109 aADClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~ 151 (201)
T KOG3201|consen 109 AADCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL 151 (201)
T ss_pred eccchhHH-------HHHHHHHHHHHHHhCcccceeEecCcccchHHHHH
Confidence 99998876 88899999999999999998888776665433333
No 256
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.53 E-value=4.6e-05 Score=53.91 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=43.9
Q ss_pred EEEcccCcHhHHHHHHc----CCCcEEEEeCCHH---HHHHHHHhhcCCCCCeEEEccccCCC-CCCCCCeeEEEeccch
Q 025475 54 LMVGCGNALMSEDMVKD----GYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 125 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~----~~~~v~~vD~s~~---~i~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l 125 (252)
||+|+..|..+..+++. +..+++++|..+. .-+..++ ..-..++++++++..+.. .+..+++|+++.....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 68999999988887764 1237999999994 3333332 111237899999986642 1335689999987642
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. . +.....++.+.+.|+|||.+++-+
T Consensus 80 ~-~-------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S-Y-------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H-------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-H-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 2 566778899999999999988643
No 257
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00044 Score=58.24 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC------CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 50 SSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~------~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.+|||+|.|.|.-+..+-.. ....++.++.|+..-+.......+. .+..-+..|-..++ ....+++++.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--ccceeehhhh
Confidence 347999999998766555443 1346788888887666655544221 11222333333333 3345666554
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
..-|-+. .+.......++.+..++.|||.+++++.+.|..
T Consensus 192 ~~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 192 LDELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 4332222 233445668999999999999999999887754
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.37 E-value=0.00093 Score=49.42 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=57.9
Q ss_pred cEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC-CCeeEEEeccchhhhcCCC----CChhhHHHHHHHH
Q 025475 74 DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED-ESFDAVIDKGTLDSLMCGT----NAPISASQMLGEV 145 (252)
Q Consensus 74 ~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~-~~~D~v~~~~~l~~~~~~~----~~~~~~~~~l~~~ 145 (252)
+|+++|+-+++++..++++... .+++++..+=.++...-+ +++|+++.|.. ++.-+. -.++...+.++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999653 368999988777764333 48999998753 221111 1224457788899
Q ss_pred HHcccCCcEEEEEEcC
Q 025475 146 SRLLKPGGIYMLITYG 161 (252)
Q Consensus 146 ~~~L~~gG~l~i~~~~ 161 (252)
.++|++||.+.++.+.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999888764
No 259
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.32 E-value=0.004 Score=49.12 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=67.5
Q ss_pred CcEEEEcccCcHhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcC---------------------------------
Q 025475 51 SRVLMVGCGNALMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEE--------------------------------- 94 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-~--~~~v~~vD~s~~~i~~a~~~~~~--------------------------------- 94 (252)
.++.|.+||.|.+..-+.-. + ...+++.|+++++++.|++++.-
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 38999999999977666443 2 55899999999999999886410
Q ss_pred -----------CCCCeEEEccccCCCC----CCCCCeeEEEeccchhhhcCCCC--ChhhHHHHHHHHHHcccCCcEEEE
Q 025475 95 -----------IPQLKYLQMDVRDMSF----FEDESFDAVIDKGTLDSLMCGTN--APISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 95 -----------~~~v~~~~~d~~~~~~----~~~~~~D~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.....+.+.|+++... ......|+|+...++-++-.+.. +..-...+++.++.+|..++++.+
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 0134577888887431 12234699999988777633333 445568899999999966666666
Q ss_pred EE
Q 025475 158 IT 159 (252)
Q Consensus 158 ~~ 159 (252)
++
T Consensus 213 ~~ 214 (246)
T PF11599_consen 213 SD 214 (246)
T ss_dssp EE
T ss_pred ec
Confidence 44
No 260
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.28 E-value=0.0012 Score=55.12 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=43.6
Q ss_pred CCcEEEEcccCcHh-HHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEcc----ccCCCCCCCCCeeEE
Q 025475 50 SSRVLMVGCGNALM-SEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMD----VRDMSFFEDESFDAV 119 (252)
Q Consensus 50 ~~~vLD~G~G~G~~-~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d----~~~~~~~~~~~~D~v 119 (252)
..++||||+|.... .+..+.. ++ +++|+|+++..++.|+++++.. .+|+++... +.+......+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999997643 3333332 57 9999999999999999998654 257766543 222111234689999
Q ss_pred Eeccchhhh
Q 025475 120 IDKGTLDSL 128 (252)
Q Consensus 120 ~~~~~l~~~ 128 (252)
+|+.+++.-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999997754
No 261
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.27 E-value=0.0014 Score=55.08 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=62.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC----CCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----FEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~----~~~~~~D~v~~ 121 (252)
.++..++|.-+|.|..+..+++. +.++++|+|.++.+++.+++.+... +++++++++..++.. ....++|.|++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence 46679999999999999999986 3479999999999999999987653 378999999887542 23356898888
Q ss_pred ccch
Q 025475 122 KGTL 125 (252)
Q Consensus 122 ~~~l 125 (252)
+..+
T Consensus 99 DLGv 102 (305)
T TIGR00006 99 DLGV 102 (305)
T ss_pred eccC
Confidence 7543
No 262
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.24 E-value=0.0011 Score=51.62 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-------C--CCCCeEEEccccCCC-C-CCCCCe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-------E--IPQLKYLQMDVRDMS-F-FEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-------~--~~~v~~~~~d~~~~~-~-~~~~~~ 116 (252)
+...+.|||||-|.+...++... ..-++|++|-...-+..++++. . .+|+.+...+...+. + +..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 34579999999999999999885 5578888887766666665542 1 346777777766542 1 223333
Q ss_pred eEEEe-ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVID-KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+-.+. ..--|.-..-....--...++.++.-+|++||.++.++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 33332 21111110000000112567888889999999998876
No 263
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.11 E-value=0.0024 Score=51.18 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=73.0
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHH----HHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCee
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSV----AIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~----~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D 117 (252)
+++++.+||-+|+++|.....+... | ...|++|+.|+. .+..|+++ +||-.+..|++.... +.-+-.|
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----tNiiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----TNIIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----CCceeeeccCCCchheeeeeeeEE
Confidence 3679999999999999988887776 3 568999999974 45555544 577777778776532 2223567
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|++.- ..+++...+.-+++..||+||-++++-
T Consensus 229 vIFaDv---------aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 229 VIFADV---------AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEeccC---------CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 777642 244566666778889999999988865
No 264
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.08 E-value=0.013 Score=52.94 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=84.2
Q ss_pred ccchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc-C----CCcEEEEeCCHHHHHHHHHhhc--CCC-CCeEEEc
Q 025475 34 QRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD-G----YEDIVNIDISSVAIDMMKMKYE--EIP-QLKYLQM 103 (252)
Q Consensus 34 ~~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~-~----~~~v~~vD~s~~~i~~a~~~~~--~~~-~v~~~~~ 103 (252)
...+.+.+++.+.+. +..+|+|..||+|.+.....+. + ...++|.|+++.....|+.+.- +.. ++....+
T Consensus 169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 344567777777665 4558999999999877776654 1 2469999999999999998862 222 3455555
Q ss_pred cccCCCCC----CCCCeeEEEeccchhhhcC----------------C--CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 104 DVRDMSFF----EDESFDAVIDKGTLDSLMC----------------G--TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 104 d~~~~~~~----~~~~~D~v~~~~~l~~~~~----------------~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|...-+.. ....||.|+++..+.-..+ + .+....-..++..+...|+|||+..++..
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 54433312 3367999999987641100 1 11112227789999999999887665543
No 265
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.08 E-value=0.0022 Score=53.46 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D~v~~~~~l~~~ 128 (252)
+++|+.||.|.+...+...|...+.++|+++.+++..+.++.. ..+++|+.++.... ...+|+++...++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6999999999999999998877889999999999999988743 25678888775222 3579999998876644
No 266
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0064 Score=51.83 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=79.0
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-----
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDG-----YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF----- 110 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-----~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~----- 110 (252)
+.--+.++.+|||+++..|.-+..+++.. ...+++=|.++.=+..........+ ++.+...++..++.
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 33346788999999999999998888763 1268999999887777766664433 44455555544432
Q ss_pred ---CCCCCeeEEEeccchhhh--cCCCC--------------ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 ---FEDESFDAVIDKGTLDSL--MCGTN--------------APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ---~~~~~~D~v~~~~~l~~~--~~~~~--------------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.....||-|++.-...+= +...+ =+.-...++.+..++||+||.++-++++
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 133469999886533221 00000 0112356788889999999999999976
No 267
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.96 E-value=0.0013 Score=58.13 Aligned_cols=117 Identities=15% Similarity=0.300 Sum_probs=72.9
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHH----HHHHHHHhhcCCCCCeEEEccc-cCCCCCCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSV----AIDMMKMKYEEIPQLKYLQMDV-RDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~----~i~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.|+|+.+|.|.++..|.+.. |..+...+. .+...-.+ +-+-. -.|- +.++ .-..+||+|.++..+.
T Consensus 368 NVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR----GLIG~-yhDWCE~fs-TYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR----GLIGV-YHDWCEAFS-TYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc----ccchh-ccchhhccC-CCCcchhheehhhhhh
Confidence 79999999999999998863 555544443 11111111 00111 1111 1222 2346899999998876
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhccccccceeEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (252)
.. .+.-+...++-++.|+|+|+|.++|-+...-..+...+ .....|....+
T Consensus 439 ~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i-~~~lrW~~~~~ 489 (506)
T PF03141_consen 439 LY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKI-AKSLRWEVRIH 489 (506)
T ss_pred hh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHH-HHhCcceEEEE
Confidence 65 23346788899999999999999998754444444444 35666764433
No 268
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0095 Score=44.19 Aligned_cols=106 Identities=8% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+..+.+|+|+|.|......++.|....+|+++++..+..++-+.-. ...+.|..-|+.+.+ +.+-.+-+|+- +
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~dy~~vviFg--a- 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LRDYRNVVIFG--A- 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-ccccceEEEee--h-
Confidence 4458999999999999999999866899999999998887766421 236778888887776 55444434432 2
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~ 167 (252)
++....+-.++..-|..+-.++..-+--|.++.
T Consensus 148 ---------es~m~dLe~KL~~E~p~nt~vvacRFPLP~w~l 180 (199)
T KOG4058|consen 148 ---------ESVMPDLEDKLRTELPANTRVVACRFPLPTWQL 180 (199)
T ss_pred ---------HHHHhhhHHHHHhhCcCCCeEEEEecCCCccch
Confidence 133344445555556667777766655555433
No 269
>PHA01634 hypothetical protein
Probab=96.90 E-value=0.0058 Score=44.08 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=42.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+.+|+|+|++.|..++.++..|+..|++++.++...+..+++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 4679999999999999999999998999999999999999887753
No 270
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0027 Score=52.41 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred HhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCC-CCCCC
Q 025475 44 RKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSF-FEDES 115 (252)
Q Consensus 44 ~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~-~~~~~ 115 (252)
...++...++|-+|.|.|...+..+.+. ..+++.+|++...++..+..+.. .+++.+..+|...+-. ...++
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 3445677799999999999999988885 55899999999999998887642 3578999998876532 45789
Q ss_pred eeEEEeccc--hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGT--LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
||+|+..-. .... -..-...++..+.+.||+||++++..
T Consensus 196 ~dVii~dssdpvgpa-----~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPA-----CALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ceEEEEecCCccchH-----HHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999986321 0000 00123667778889999999998866
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.83 E-value=0.024 Score=45.77 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCC-CCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDM-SFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+||-+|-..-......+.....+|+.+|+++..++..++..+..+ +++.+..|+++. |+.-.++||+++...+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 577999999765432222223335699999999999999988875433 599999999875 323357899999987633
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCc-EEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGG-IYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG-~l~i~~ 159 (252)
+ +...-++.+....|+..| ..++.-
T Consensus 124 -~-------~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 124 -P-------EGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp -H-------HHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred -H-------HHHHHHHHHHHHHhCCCCceEEEEE
Confidence 2 677888999999998766 444433
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.75 E-value=0.0056 Score=48.37 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCcEEEEcccCcHhHHHHHHc-----CCCcEEEEeCCHHHHHH-HHHhhcCCCCCeEEEccccCCCC------C-CCCCe
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-----GYEDIVNIDISSVAIDM-MKMKYEEIPQLKYLQMDVRDMSF------F-EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-----~~~~v~~vD~s~~~i~~-a~~~~~~~~~v~~~~~d~~~~~~------~-~~~~~ 116 (252)
+..|+|+|.-.|..+...++. +.++|+++|++...... +.+...-.++|+++++|..+... . .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 458999999998877766553 35699999996432221 12211123589999999877531 1 12234
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+|+... -|.. ++..+.|+....++++|+++++-+
T Consensus 113 vlVilDs-~H~~-------~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS-SHTH-------EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC-CccH-------HHHHHHHHHhCccCCCCCEEEEEe
Confidence 4555543 2322 566778888999999999999855
No 273
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.74 E-value=0.0011 Score=49.71 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=68.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHH-HHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDM-MKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~-a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~~~~~l~~ 127 (252)
+++.+-+|+..=..=...+.+|.++++.||.++--++. .+.+. ..+...|+.. +. .-.++||.+.+..+++|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-----ssi~p~df~~~~~-~y~~~fD~~as~~siEh 75 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-----SSILPVDFAKNWQ-KYAGSFDFAASFSSIEH 75 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-----ccccHHHHHHHHH-Hhhccchhhheechhcc
Confidence 45788888886666666667788799999987532111 11111 1111222211 11 23467999999999999
Q ss_pred hcCC----CCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 128 LMCG----TNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 128 ~~~~----~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
...+ +.++..-...+.++.++||+||.+++..+..+
T Consensus 76 ~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 76 FGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8432 23333445677889999999999999876543
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.71 E-value=0.014 Score=49.71 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=69.8
Q ss_pred hhCCCCCcEEEEccc-CcHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 45 KYIPTSSRVLMVGCG-NALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G-~G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..+.|+.+|+-+|+| .|..+..+++ .| .+|+++|.+++-.+.|++.-++ .++...-.+..+.-.+.||+|+..
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----HVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----EEEEcCCchhhHHhHhhCcEEEEC
Confidence 446788999999987 5678888888 46 5999999999999999887432 444433111110112239999965
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
-. ...++...+.|++||.++++...
T Consensus 237 v~--------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG--------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC--------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 33 44578888999999999987755
No 275
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.62 E-value=0.017 Score=46.99 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=66.2
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-------cCCC-CCeEEEccccCCCC--CCCCC-eeE
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-------EEIP-QLKYLQMDVRDMSF--FEDES-FDA 118 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-------~~~~-~v~~~~~d~~~~~~--~~~~~-~D~ 118 (252)
..+||++|+|+|..+..++.....+|+..|....... .+.+. ...+ .+.+...+=...+. +..+. +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4479999999998888888865558998888644322 22221 1111 23333222111110 12233 999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++..++++. +....++..+..+|..+|.+++...-+
T Consensus 166 ilasDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999998877 667777777888888888766666433
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=0.005 Score=54.71 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=79.2
Q ss_pred hhHHHHHhhCCC-----CCcEEEEcccCcHhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccc
Q 025475 38 ALRPFVRKYIPT-----SSRVLMVGCGNALMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV 105 (252)
Q Consensus 38 ~l~~~~~~~~~~-----~~~vLD~G~G~G~~~~~l~~~-----~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~ 105 (252)
++...+..+.+. ..+|+-+|+|.|-+.....+. .-.++++|+-+|.++...+..--. ..+|+++..|+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 444555555432 237889999999887766554 133799999999998877764311 34799999999
Q ss_pred cCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 106 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 106 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+++. .+..+.|++|+- .|..+.+. +--...|.-+...|||+|+.+=.
T Consensus 431 R~w~-ap~eq~DI~VSE-LLGSFGDN----ELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 431 RKWN-APREQADIIVSE-LLGSFGDN----ELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cccC-CchhhccchHHH-hhccccCc----cCCHHHHHHHHhhcCCCceEccc
Confidence 9997 445789998863 23333222 33456778888999999886643
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.42 E-value=0.0093 Score=47.77 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=40.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHH
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM 90 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~ 90 (252)
+..+|....+++..|||.-||+|+.+....+.|- +++|+|+++..++.|++
T Consensus 181 ~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4556666677889999999999999999999865 89999999999998864
No 278
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.33 E-value=0.024 Score=47.67 Aligned_cols=106 Identities=18% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEE--EccccCCC--CCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYL--QMDVRDMS--FFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~--~~d~~~~~--~~~~~~~D~v 119 (252)
++++.+||-+|+|+ |..+...++. |..+|+.+|+++.-++.|++.-... .++.-. ..++.+.. ......+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56888999999996 7777777766 7889999999999999999832110 000000 01111110 0223458888
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+.. .-.+..++.....++.||.++++.+..+..
T Consensus 247 ~dC-------------sG~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 247 FDC-------------SGAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred EEc-------------cCchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 843 334455677778899999988888776543
No 279
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.33 E-value=0.0068 Score=52.73 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=53.9
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.|||+|.|||.++...+..|...+++++.=..|.+.|++.....+ +|+++...-++....+....|+++.-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHh
Confidence 799999999999999999987789999999999999999876543 56666655555431223346666643
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=96.29 E-value=0.015 Score=48.69 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
..+|...-.++..|||.-||+|+.+....+.|- +++|+|++++.++.|+.++.
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 445555567888999999999999999988864 99999999999999999974
No 281
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.29 E-value=0.04 Score=47.29 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc------------C-----CCcEEEEeCCHHHHHHHHHhhc-------CCCC--CeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD------------G-----YEDIVNIDISSVAIDMMKMKYE-------EIPQ--LKYL 101 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~------------~-----~~~v~~vD~s~~~i~~a~~~~~-------~~~~--v~~~ 101 (252)
+...+|+|+||..|..+..+... + .-+|+.-|+-..-....-+.+. ..++ +..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44459999999999988877653 0 1267777874322222111111 1122 2334
Q ss_pred EccccCCCCCCCCCeeEEEeccchhhhcCCC---CC------------------h-----------hhHHHHHHHHHHcc
Q 025475 102 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGT---NA------------------P-----------ISASQMLGEVSRLL 149 (252)
Q Consensus 102 ~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~---~~------------------~-----------~~~~~~l~~~~~~L 149 (252)
-+.+.+-. +++++.|++++..++|++..-+ .+ + .|...+|+.=.+=|
T Consensus 95 pgSFy~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred Cchhhhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45555544 7899999999999999984211 10 1 22344444445668
Q ss_pred cCCcEEEEEEcCChh
Q 025475 150 KPGGIYMLITYGDPK 164 (252)
Q Consensus 150 ~~gG~l~i~~~~~~~ 164 (252)
++||.++++..+.+.
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999998876655
No 282
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.28 E-value=0.014 Score=50.91 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--C--CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--P--QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~--~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.+.+|||.=+|+|.=+...+.. +..+|++-|+|+++++..+++++.+ . .+++.+.|+..+-......||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999866666555 4569999999999999999997432 2 36777778766521256789999865
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .-.+..+++.+.+.++.||.|.++..
T Consensus 129 P-----------fGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 P-----------FGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ------------SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred C-----------CCCccHhHHHHHHHhhcCCEEEEecc
Confidence 2 25567789999999999999999763
No 283
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.013 Score=46.80 Aligned_cols=106 Identities=24% Similarity=0.307 Sum_probs=70.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--------CC--CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-------CC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--------GY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FF 111 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--------~~--~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-------~~ 111 (252)
.-.|++|+++..|+++.-+.++ +. .++++||+-+= +-.+.|..+++|++... .|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------CccCceEEeecccCCHhHHHHHHHHh
Confidence 3458999999999999988775 11 13999998542 11246788899998753 15
Q ss_pred CCCCeeEEEeccc-----hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 112 EDESFDAVIDKGT-----LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 112 ~~~~~D~v~~~~~-----l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
..++.|+|+|.+. +|.+ -+--..+-+.+.++-...+|++||.++.--+....
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred CCCCccEEEeCCCCCccccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 5678999999874 4443 00001122355667778999999999876555443
No 284
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.21 E-value=0.0018 Score=53.24 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=66.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-------c--CCCC---CeEEEccccCCCCCCCC-
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-------E--EIPQ---LKYLQMDVRDMSFFEDE- 114 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-------~--~~~~---v~~~~~d~~~~~~~~~~- 114 (252)
-.+.+|||+|||.|-........+...+...|+|...++.-..-. . ...+ ..+....+.+......+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 367799999999999999988888668999999888763221110 0 0001 11111111122211123
Q ss_pred -CeeEEEeccchhhhcCCCCChhhHHHH-HHHHHHcccCCcEEEEEE
Q 025475 115 -SFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 -~~D~v~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~L~~gG~l~i~~ 159 (252)
.||+|.+..+++.. ...+.. ......+++++|.++++.
T Consensus 195 ~~ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhhh
Confidence 68999998888876 555555 666677889999887644
No 285
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.12 E-value=0.0079 Score=48.53 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=46.6
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC---C-----CCCeEEEccccCCCCCCCCCeeEE
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE---I-----PQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~---~-----~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+|||.-+|-|..+..++..|. +|+++|-||-+....+.-+ .. . .+++++.+|..++...++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999988876 8999999987654444322 11 1 268999999988643456899999
Q ss_pred Eeccchhh
Q 025475 120 IDKGTLDS 127 (252)
Q Consensus 120 ~~~~~l~~ 127 (252)
.+...+.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 99887665
No 286
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.07 E-value=0.0092 Score=47.65 Aligned_cols=89 Identities=19% Similarity=0.314 Sum_probs=56.2
Q ss_pred hhHHHHHhh---CC-CCCcEEEEcccCcHhHHHH--HHcCCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEEccccC
Q 025475 38 ALRPFVRKY---IP-TSSRVLMVGCGNALMSEDM--VKDGYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQMDVRD 107 (252)
Q Consensus 38 ~l~~~~~~~---~~-~~~~vLD~G~G~G~~~~~l--~~~~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~~d~~~ 107 (252)
.+..++.+- ++ ++.++||+|.|.-..--.+ .+.|+ +++|.|+++..++.|+..+..++ .+++....-.+
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~ 141 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD 141 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc
Confidence 344555443 22 5568999998864332222 22356 89999999999999999886543 34443322111
Q ss_pred -C---CCCCCCCeeEEEeccchhh
Q 025475 108 -M---SFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 108 -~---~~~~~~~~D~v~~~~~l~~ 127 (252)
+ ..-..+.||+++|+..+|.
T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 142 AIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccceeeeEecCCCcch
Confidence 1 1023578999999999874
No 287
>PRK13699 putative methylase; Provisional
Probab=95.90 E-value=0.034 Score=44.98 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..++.....++..|||.-||+|+.+....+.|. +++|+|+++...+.+.+++..
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 345555566888999999999999999988865 899999999999999888743
No 288
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.85 E-value=0.0052 Score=50.86 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCCCcEEEEcccCcHhHH-HHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSE-DMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~-~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..+..|.|+=+|.|.++. .+...|...|+++|.+|.+++..++.++.+. +..++.+|-+... +....|-|...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnLG 269 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNLG 269 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheeec
Confidence 345789999999999999 7778888899999999999999999875432 3445555555553 56677887753
No 289
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.83 E-value=0.057 Score=47.01 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCCCCeeEEEeccchhhhcCCC---CC-----------------h-----------hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 FEDESFDAVIDKGTLDSLMCGT---NA-----------------P-----------ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~---~~-----------------~-----------~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++.++.+++++..++|++..-+ .+ + .|...+|+.=.+-|.|||.++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 7889999999999999983211 00 0 123444444556789999999988
Q ss_pred cCChh
Q 025475 160 YGDPK 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
.+++.
T Consensus 238 ~Gr~~ 242 (386)
T PLN02668 238 LGRTS 242 (386)
T ss_pred ecCCC
Confidence 77653
No 290
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.80 E-value=0.12 Score=46.73 Aligned_cols=99 Identities=18% Similarity=0.340 Sum_probs=64.5
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----------CC-C----
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 110 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 110 (252)
++.+|+-+|||. |..+...+.. |. +|+++|.++.-++.++..- .+++..|..+ .. .
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslG-----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMG-----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEEeccccccccccchhhhcchhHHHH
Confidence 577999999996 7777777766 66 8999999999999888742 1222222111 10 0
Q ss_pred ----CCC--CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 111 ----FED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 111 ----~~~--~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.+ ..+|+|+..-.. +....+..+.+++.+.+++||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag~-------pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALI-------PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCC-------CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 358999964321 1212333345889999999999887765
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.72 E-value=0.032 Score=48.21 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcccc-C----CCCCCC-CCeeEEE
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-D----MSFFED-ESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~-~----~~~~~~-~~~D~v~ 120 (252)
++.+|+-+|||+ |.++..+++. |..+++++|.++.-++.|++.... ..+.-... + ...... ..+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 344899999996 8887777766 677999999999999999986422 11111111 0 100122 3699999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
-.-. ....+..+.+++++||.+.+.....+.
T Consensus 244 e~~G-------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVG-------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCC-------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 6322 233788899999999999887765433
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.63 E-value=0.069 Score=45.85 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE---ccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ---MDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~---~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++.+||-.||| .|..+..+++. |..+++++|.+++-++.+++.-.. .++. .++.+.. ...+.+|+|+..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~-~~~g~~D~vid~ 242 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD----KLVNPQNDDLDHYK-AEKGYFDVSFEV 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc----EEecCCcccHHHHh-ccCCCCCEEEEC
Confidence 356789989986 36676666665 555799999999988888764211 1111 1122221 112358988853
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-. -...++.+.++|++||.+++...
T Consensus 243 ~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 243 SG-------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC-------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 11 12356677788999999888764
No 293
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.62 E-value=0.041 Score=46.43 Aligned_cols=77 Identities=9% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC----C-CCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----F-EDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~----~-~~~~~D~v~ 120 (252)
.++..++|.--|.|..+..+++. +..+++|+|.++.+++.+++++... +++.++..++.++.. . ....+|.|+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 46669999999999999999987 3579999999999999999988653 579999999887642 2 335789988
Q ss_pred eccc
Q 025475 121 DKGT 124 (252)
Q Consensus 121 ~~~~ 124 (252)
+...
T Consensus 99 ~DLG 102 (310)
T PF01795_consen 99 FDLG 102 (310)
T ss_dssp EE-S
T ss_pred Eccc
Confidence 8654
No 294
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.62 E-value=0.038 Score=46.30 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=75.7
Q ss_pred CcEEEEcccCcHhHHHHHHc-------C-----C---------CcEEEEeCCHH--HHHHHHHhhcCC------------
Q 025475 51 SRVLMVGCGNALMSEDMVKD-------G-----Y---------EDIVNIDISSV--AIDMMKMKYEEI------------ 95 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-------~-----~---------~~v~~vD~s~~--~i~~a~~~~~~~------------ 95 (252)
.+||-||.|.|.-...++.. . . ..++.||+.+. .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 59999999998754444332 0 1 27999999864 455555443221
Q ss_pred ----C---CCeEEEccccCCCC------CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 96 ----P---QLKYLQMDVRDMSF------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 96 ----~---~v~~~~~d~~~~~~------~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+ +++|.+.|+..+.. +...+.++|...++++-++... .....++|.++-..+++|..|+|++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 1 57899999887752 1113578888888888764443 4677899999999999999999987
No 295
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.60 E-value=0.084 Score=44.06 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=60.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC----CCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~----~~~~~~D~v~ 120 (252)
.++...+|.--|.|..+..+++.. .++++++|.++.+++.|++.+.. .+++.+++.++.++.. ...+.+|-|+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence 466799999999999999999985 45799999999999999999866 3488999988876532 2234667776
Q ss_pred ecc
Q 025475 121 DKG 123 (252)
Q Consensus 121 ~~~ 123 (252)
...
T Consensus 102 ~DL 104 (314)
T COG0275 102 LDL 104 (314)
T ss_pred Eec
Confidence 554
No 296
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.57 E-value=0.0079 Score=42.33 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=30.7
Q ss_pred CeeEEEeccc--hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 115 SFDAVIDKGT--LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 115 ~~D~v~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.||+|+|..+ +-|+ .-.++.+..++++++++|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHL---n~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHL---NWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHH---HHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEe---cCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999776 3344 114556789999999999999999873
No 297
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.38 E-value=0.025 Score=48.02 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=55.9
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~~ 128 (252)
+++|+-||.|.+...+.+.|...+.++|+++.+.+.-+.++. .....|+.+... ++. .+|+++...++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceE
Confidence 689999999999999999997789999999999999999884 788889988751 333 59999998776654
No 298
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.23 E-value=0.09 Score=46.01 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----CCCC-CCCCeeE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----MSFF-EDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----~~~~-~~~~~D~ 118 (252)
+.++.+||..|||. |..+..+++. |..+++++|.+++..+.+++... ..++...-.+ .... ....+|+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG----AETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----cEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 45677999999987 8888888776 44469999999999998887631 1222111110 1001 2336898
Q ss_pred EEeccchh-----------hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLD-----------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~-----------~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+..-.-+ |.++ +..+....++++.+.|+++|.+++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLK---LETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccc---cccCchHHHHHHHHHhccCCEEEEEcC
Confidence 88742111 1100 112335578889999999999988753
No 299
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.12 E-value=0.048 Score=46.46 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=55.8
Q ss_pred EEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 53 VLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
|+|+-||.|.+..-+.+.|..-+.++|+++.+.+..+.++.. .++.+|+.++....-..+|+++....+..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 589999999999999988875677899999999999988743 445678877641112358999988776654
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=95.10 E-value=0.038 Score=46.35 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=42.7
Q ss_pred CCeEEEccccCC-CCCCCCCeeEEEeccchhhh-cCCCC--------ChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 97 QLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSL-MCGTN--------APISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 97 ~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~-~~~~~--------~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.+++++|..+. ..++++++|+|+++..+.-- ..... ...-....+.+++++||+||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 457888998874 22677899999998875320 00000 00223578899999999999998854
No 301
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.84 E-value=0.025 Score=47.82 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=60.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH-------HHhhcCCC----CCeEEEccccCCCCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM-------KMKYEEIP----QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a-------~~~~~~~~----~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+|..|+|.-.|||.+....+.-|. -|+|.||+-.+++.. +.++++.+ -+.+..+|..+.+-.....
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 57889999999999999999998875 899999998888743 23343332 3567788888766233567
Q ss_pred eeEEEeccchh
Q 025475 116 FDAVIDKGTLD 126 (252)
Q Consensus 116 ~D~v~~~~~l~ 126 (252)
||.|+|..++.
T Consensus 285 fDaIvcDPPYG 295 (421)
T KOG2671|consen 285 FDAIVCDPPYG 295 (421)
T ss_pred eeEEEeCCCcc
Confidence 99999987643
No 302
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.77 E-value=0.029 Score=48.75 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=61.0
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---C-CCeEEEccccC
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---P-QLKYLQMDVRD 107 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~-~v~~~~~d~~~ 107 (252)
|-.++....+.+....+++..|.|+.||.|-++..++..+ +.|++-|+++++++..+.+++-+ + ++++...|+.+
T Consensus 232 WnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 232 WNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred eeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 5555556666777778899999999999999999999987 59999999999999999988532 2 46777766654
Q ss_pred C
Q 025475 108 M 108 (252)
Q Consensus 108 ~ 108 (252)
+
T Consensus 311 F 311 (495)
T KOG2078|consen 311 F 311 (495)
T ss_pred H
Confidence 3
No 303
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.64 E-value=0.13 Score=44.09 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=71.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
..+|+|.-||+|.=+...+.. +..+++.-|+||.+++.+++++..+ .+...+..|...+-......||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP--- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP--- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC---
Confidence 568999999999876666655 4448999999999999999998643 2455555665544212236788886542
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-.+.-++..+.+.++.||+|.++.
T Consensus 130 --------FGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 130 --------FGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred --------CCCCchHHHHHHHHhhcCCEEEEEe
Confidence 2444567777888888999998865
No 304
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.59 Score=38.04 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh-cCCCC--CeEEEccccCC-CCCCCCCe-eE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY-EEIPQ--LKYLQMDVRDM-SFFEDESF-DA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~-~~~~~--v~~~~~d~~~~-~~~~~~~~-D~ 118 (252)
.+...+|+|+|+..-+..+... + ..+++.+|+|...++..-+.+ ...+. +.-+++|.... ...+..+- =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 3568999999999877777654 3 458999999999887655544 34453 44555665432 11222222 23
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++...++..+ ++.....++..+...|+||-++++.
T Consensus 158 ~flGStlGN~-----tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNL-----TPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCC-----ChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3334456666 8889999999999999999988774
No 305
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.52 E-value=0.2 Score=44.89 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC----------------CC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----------------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~----------------~~ 113 (252)
..+++|+-||.|.+..-+...|...+.++|+++.+.+.-+.++...+.......|+.++... .-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI 167 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence 34999999999999999988887678999999999998888874333445556677665310 01
Q ss_pred CCeeEEEeccchhhh
Q 025475 114 ESFDAVIDKGTLDSL 128 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~ 128 (252)
...|+++...++..+
T Consensus 168 p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 168 PDHDVLLAGFPCQPF 182 (467)
T ss_pred CCCCEEEEcCCCCcc
Confidence 257999988776644
No 306
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.51 E-value=0.6 Score=38.61 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=72.0
Q ss_pred HHHhhCCC-CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcC-----CCCCeEEEccccC-CCC---
Q 025475 42 FVRKYIPT-SSRVLMVGCGNALMSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEE-----IPQLKYLQMDVRD-MSF--- 110 (252)
Q Consensus 42 ~~~~~~~~-~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s-~~~i~~a~~~~~~-----~~~v~~~~~d~~~-~~~--- 110 (252)
.+.+.+.. ...|+.+|||-=.-...+... . .+..+|++ |+.++.-++.+.. ..+.+++.+|+.+ +..
T Consensus 73 ~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~ 150 (260)
T TIGR00027 73 FLLAAVAAGIRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA 150 (260)
T ss_pred HHHHHHhcCCcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence 34444432 337999999975555444322 1 34455555 5566655555542 2467888999862 110
Q ss_pred ---CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 111 ---FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 111 ---~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.....-++++-+++.++ +.+...++++.+.+...+|+.+++-..
T Consensus 151 ~~gfd~~~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 151 AAGFDPTAPTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hCCCCCCCCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 222345578888899999 889999999999998888888776443
No 307
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.48 E-value=0.16 Score=39.54 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=71.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC------CCCCCee
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF------FEDESFD 117 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~------~~~~~~D 117 (252)
.+..|+++|+-.|..+.+++.. | ..+|+++|++-..++.+-.. .+.|.+++++-.++.. ...+.--
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 3458999999988877777664 5 35999999986654433332 3689999999887641 2233334
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.++-..-|+. +..-+-++-+.++|..|-++++-+
T Consensus 146 IfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 146 IFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 55555666666 777778888889999999988865
No 308
>PTZ00357 methyltransferase; Provisional
Probab=94.42 E-value=0.24 Score=46.01 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=60.3
Q ss_pred cEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh------cC-----CCCCeEEEccccCCCCCC---
Q 025475 52 RVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY------EE-----IPQLKYLQMDVRDMSFFE--- 112 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~------~~-----~~~v~~~~~d~~~~~~~~--- 112 (252)
.|+-+|+|.|-+....++. + ..++++||-++.++...+.+. .+ .+.|+++..|++.+. .+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~-~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA-TAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc-ccccc
Confidence 6899999999887776654 3 348999999966433333222 11 125899999999984 22
Q ss_pred --------CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccC----CcE
Q 025475 113 --------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP----GGI 154 (252)
Q Consensus 113 --------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~----gG~ 154 (252)
-+++|+||+ ..|-.+.+.+-+|+. |.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPEC----LDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPEC----LEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHH----HHHHHHhhhhhcccccc
Confidence 136899986 233333333344454 4445555554 665
No 309
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.37 E-value=0.89 Score=32.32 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=63.0
Q ss_pred HHHHHhhCCCCCcEEEEcccCc-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCee
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNA-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFD 117 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D 117 (252)
...+.....++ +|.++|.|.= ..+..++++|+ .++++|+++. .+. ..++++.-|+++.. .. =...|
T Consensus 5 a~~iAre~~~g-kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~------~g~~~v~DDitnP~-~~iY~~A~ 72 (129)
T COG1255 5 AEYIARENARG-KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP------EGLRFVVDDITNPN-ISIYEGAD 72 (129)
T ss_pred HHHHHHHhcCC-cEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc------ccceEEEccCCCcc-HHHhhCcc
Confidence 33444433334 9999999974 46777778885 9999999887 111 25789999998864 21 13478
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|.+. +++..+...+-.+.+.++ ..+++....
T Consensus 73 lIYSi----------RpppEl~~~ildva~aVg--a~l~I~pL~ 104 (129)
T COG1255 73 LIYSI----------RPPPELQSAILDVAKAVG--APLYIKPLT 104 (129)
T ss_pred ceeec----------CCCHHHHHHHHHHHHhhC--CCEEEEecC
Confidence 88763 344566666666666544 356665543
No 310
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.17 Score=43.32 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=60.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~ 127 (252)
..+++|+-||.|.+..-+...|+.-+.++|+++.+++.-+.++.. ..++..|+..... +....+|+++....+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 358999999999999999999977899999999999999988753 4667777776541 11117899999887776
Q ss_pred h
Q 025475 128 L 128 (252)
Q Consensus 128 ~ 128 (252)
+
T Consensus 80 F 80 (328)
T COG0270 80 F 80 (328)
T ss_pred h
Confidence 5
No 311
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.19 E-value=0.2 Score=41.06 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=54.0
Q ss_pred hhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 45 KYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+++.+++...|+|+-.|.++..+.+++- .|++||-.+-+-. +.+.+.|+-...|.+.+. ......|-.+|..+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~s-----L~dtg~v~h~r~DGfk~~-P~r~~idWmVCDmV 279 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQS-----LMDTGQVTHLREDGFKFR-PTRSNIDWMVCDMV 279 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhh-----hhcccceeeeeccCcccc-cCCCCCceEEeehh
Confidence 4467899999999999999999999965 8999998663322 223356778888888776 23456777777543
No 312
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.17 E-value=0.33 Score=42.96 Aligned_cols=108 Identities=12% Similarity=0.094 Sum_probs=68.9
Q ss_pred CcEEEEcccCcH--hHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEc--cccC--CCCCCCCCeeEEEec
Q 025475 51 SRVLMVGCGNAL--MSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQM--DVRD--MSFFEDESFDAVIDK 122 (252)
Q Consensus 51 ~~vLD~G~G~G~--~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~--d~~~--~~~~~~~~~D~v~~~ 122 (252)
..++|+|+|.|. .+...+..+ ...++.||.+..|.........+.. .-..... .+.+ ++......||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 378888888654 444444444 5589999999999998888775411 1111111 1222 231344569999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH-HcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS-RLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~l~i~~~~~ 162 (252)
+.++++ .+...+....++.+ ....+|+.+++++.+.
T Consensus 282 h~l~~~----~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHEL----GSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeecc----CCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 998887 34445555555555 4557889999988553
No 313
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.03 E-value=0.9 Score=34.84 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=65.3
Q ss_pred EEcccCcHhHHHHHHc-C-CCcEEEEeCCHH--HHHHHH---Hhh---cCCCCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 55 MVGCGNALMSEDMVKD-G-YEDIVNIDISSV--AIDMMK---MKY---EEIPQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 55 D~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~--~i~~a~---~~~---~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
-||=|.-+++..+++. + ...+++.-+... ..+... .++ +..+..-....|++++.. .....||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 4677777888888877 3 446666555432 222211 222 122223345567776643 24678999999
Q ss_pred ccchhhhcCCC--------CChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 122 KGTLDSLMCGT--------NAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 122 ~~~l~~~~~~~--------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++..- .+. .+..-+..++..+..+|+++|.+.|+-...+
T Consensus 82 NFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 82 NFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred eCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 877442 110 1234568889999999999999998876543
No 314
>PRK13699 putative methylase; Provisional
Probab=93.99 E-value=0.085 Score=42.69 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=40.5
Q ss_pred eEEEccccCC-CCCCCCCeeEEEeccchhh-hc-C-C-----CCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 99 KYLQMDVRDM-SFFEDESFDAVIDKGTLDS-LM-C-G-----TNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 99 ~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~-~~-~-~-----~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++.++|..+. ..++++++|+|+...++.- .. . + ....+-....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677887664 2378899999999987641 00 0 0 001123467889999999999988764
No 315
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.97 E-value=0.057 Score=37.86 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=26.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDI 80 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~ 80 (252)
+....+|+|||+|.+.-.|.+.|+ .=.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 345899999999999999999886 6677886
No 316
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.95 E-value=0.11 Score=45.25 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=54.7
Q ss_pred CCCeEEEccccCCCC-CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 96 PQLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 96 ~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+++++..++.+... .+++++|.++.....+++ +++...+.++++.+.++|||+++.-+...+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 578999999988642 467899999999999999 889999999999999999999999775543
No 317
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.87 E-value=1.1 Score=34.16 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=71.0
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---CCC
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDE 114 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~ 114 (252)
.+.+.+.+......+|+-+||=+-.....-......+++..|++...-... ++ .++.-|......+ -.+
T Consensus 14 ~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p~~~~~~l~~ 85 (162)
T PF10237_consen 14 FLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEPEELPEELKG 85 (162)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCChhhhhhhcCC
Confidence 345555554456679999999775544443112345899999987543211 12 4555565543222 257
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+||+|++..++ + +.+-..++...+.-++++++.+++.+.
T Consensus 86 ~~d~vv~DPPF--l-----~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 86 KFDVVVIDPPF--L-----SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CceEEEECCCC--C-----CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 89999999887 3 447777888888888899999998874
No 318
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.86 E-value=0.35 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=35.1
Q ss_pred CcEEEEcccCcHhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 51 SRVLMVGCGNALMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~---------~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+|+|+|+|+|.++..+++. ...+++.||+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 59999999999999998875 124799999999998888887754
No 319
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.82 E-value=1.8 Score=33.55 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=63.6
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~~ 110 (252)
+|.-+|+|+ | .++..++..|. +|+.+|.+++.++.+++++.. .+ +++ ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 366788885 4 45566666676 999999999999888776532 11 222 12222222
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
. ..|+|+-.- ..+.+-.++++.++.+++.|+-.+.-.+-..+.......
T Consensus 77 -~--~adlViEai--------~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~ 125 (180)
T PF02737_consen 77 -V--DADLVIEAI--------PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAA 125 (180)
T ss_dssp -C--TESEEEE-S---------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTT
T ss_pred -h--hhheehhhc--------cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhc
Confidence 1 689988542 233478899999999999999888777666555544444
No 320
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.32 Score=41.74 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=36.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~---------~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+..++|+|+|+|.++..++.. ...++..|++|+...+.=++.++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3458999999999999988764 145899999999987776666643
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.35 E-value=0.63 Score=39.93 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+||-+|||. |.++..++.. |..+++++|.++.-++.++. . ... .. . .+.. ....+|+|+..-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~~~-~~-~--~~~~--~~~g~d~viD~~ 230 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---DET-YL-I--DDIP--EDLAVDHAFECV 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---Cce-ee-h--hhhh--hccCCcEEEECC
Confidence 35677999999874 6666666553 45589999999887777764 2 111 11 1 1111 112489888532
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .......+....++|+++|.+++...
T Consensus 231 G----------~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G----------GRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C----------CCccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 01123467788899999999887664
No 322
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.29 E-value=1.3 Score=36.37 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=66.8
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHH---c-C--CCcEEEEeCC--------------------------HHH
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVK---D-G--YEDIVNIDIS--------------------------SVA 84 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~---~-~--~~~v~~vD~s--------------------------~~~ 84 (252)
+...+...+ .-+..|+|+||-.|..+..++. . + ..++++.|.= ...
T Consensus 62 L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s 141 (248)
T PF05711_consen 62 LYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVS 141 (248)
T ss_dssp HHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccC
Confidence 444444443 2334899999998876654432 2 2 3468887741 113
Q ss_pred HHHHHHhhcCC----CCCeEEEccccCC-CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 85 IDMMKMKYEEI----PQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 85 i~~a~~~~~~~----~~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+..++++... ++++++.+.+.+. +..+..++-++.+..-++ +.....|+.++..|.+||++++=+
T Consensus 142 ~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY---------esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 142 LEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY---------ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH---------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch---------HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 45555666543 3789999998764 323444555554443222 566888999999999999999988
Q ss_pred cCChh
Q 025475 160 YGDPK 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
++.+.
T Consensus 213 Y~~~g 217 (248)
T PF05711_consen 213 YGHPG 217 (248)
T ss_dssp TTTHH
T ss_pred CCChH
Confidence 77643
No 323
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.08 E-value=0.91 Score=38.34 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.++.++|-+||| .|.++..+++. |...++++|.++..++.+... .+ .|..+. ....+|+|+..-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-------~~--i~~~~~---~~~g~Dvvid~~G- 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-------EV--LDPEKD---PRRDYRAIYDASG- 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-------cc--cChhhc---cCCCCCEEEECCC-
Confidence 346688988987 47777777765 665677889888766655432 11 111110 1235899885321
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-...++.+.++|+++|.+++...
T Consensus 210 ------------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ------------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------------CHHHHHHHHHhhhcCcEEEEEee
Confidence 12356778889999999987654
No 324
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.82 E-value=0.14 Score=45.47 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=73.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC---CCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS---FFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~---~~~~~~~D~v 119 (252)
.++.+|||.-|++|.-++..+.. +..++++-|.++.++...+++...+. .++....|+...- ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45669999999999887777765 46799999999999999999885432 2444445543321 0234679998
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
=... .-....+|+.+.+.++.||.|+++.
T Consensus 188 DLDP-----------yGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDP-----------YGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCC-----------CCCccHHHHHHHHHhhcCCEEEEEe
Confidence 7542 2445678888899999999999865
No 325
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.66 E-value=0.46 Score=34.28 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=57.6
Q ss_pred cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeEEEeccchhhhcCCCC
Q 025475 59 GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDAVIDKGTLDSLMCGTN 133 (252)
Q Consensus 59 G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~v~~~~~l~~~~~~~~ 133 (252)
|.|..+..+++....+++++|.++.-++.+++.-.. .++..+-.++. . .....+|+|+..-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSSHHHHHHHHTTTSSEEEEEESSS---------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccccccccccccccccceEEEEecC---------
Confidence 457778888877326999999999999998875321 22222211111 0 23357999995321
Q ss_pred ChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 134 APISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 134 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
-...++....+|+++|.+++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1457888889999999999877554
No 326
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.50 E-value=0.7 Score=39.82 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=57.3
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeC---CHHHHHHHHHhhcCCCCCeEEE---ccccCCCCCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDI---SSVAIDMMKMKYEEIPQLKYLQ---MDVRDMSFFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~---s~~~i~~a~~~~~~~~~v~~~~---~d~~~~~~~~~~~~D~v 119 (252)
.++.+||-+|+|. |.++..+++. |. ++++++. ++.-.+.+++.-. ..+. .+..+ . .....+|+|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga-----~~v~~~~~~~~~-~-~~~~~~d~v 242 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGA-----TYVNSSKTPVAE-V-KLVGEFDLI 242 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCC-----EEecCCccchhh-h-hhcCCCCEE
Confidence 4677899999874 7777777766 45 7999987 6777776665321 1111 11111 0 112458988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. -...+....++|+++|.+++...
T Consensus 243 id~~g-------------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 243 IEATG-------------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EECcC-------------CHHHHHHHHHHccCCcEEEEEec
Confidence 85321 12357778899999999887654
No 327
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.42 E-value=1.6 Score=34.99 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.+||-.|++.| . .+..+++.|. +|++++.++..............++.++.+|+.+.... .-+..|
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 458889998643 2 3444455566 89999999876665544443334678888998864311 013468
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
.++.+..
T Consensus 84 ~ii~~ag 90 (238)
T PRK05786 84 GLVVTVG 90 (238)
T ss_pred EEEEcCC
Confidence 7776543
No 328
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.13 E-value=0.6 Score=33.86 Aligned_cols=101 Identities=15% Similarity=0.299 Sum_probs=55.2
Q ss_pred hHHHHHhhCCCCCcEEEEcccCc-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCe
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNA-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESF 116 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~ 116 (252)
+.+.+....+.+ +|+|+|-|.= ..+..|.+.|. .++++|+.+.. +. ..+.++.-|+++.. +. =...
T Consensus 4 ~a~~ia~~~~~~-kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~---a~------~g~~~v~DDif~P~-l~iY~~a 71 (127)
T PF03686_consen 4 FAEYIARLNNYG-KIVEVGIGFNPEVAKKLKERGF-DVIATDINPRK---AP------EGVNFVVDDIFNPN-LEIYEGA 71 (127)
T ss_dssp HHHHHHHHS-SS-EEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-------------STTEE---SSS---HHHHTTE
T ss_pred HHHHHHHhCCCC-cEEEECcCCCHHHHHHHHHcCC-cEEEEECcccc---cc------cCcceeeecccCCC-HHHhcCC
Confidence 455565554444 9999999964 56777777785 99999999871 11 25788999998864 21 1358
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|.+.. ++..++..+.++.+. -|.-+++...+..
T Consensus 72 ~lIYSiR----------PP~El~~~il~lA~~--v~adlii~pL~~e 106 (127)
T PF03686_consen 72 DLIYSIR----------PPPELQPPILELAKK--VGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEES------------TTSHHHHHHHHHH--HT-EEEEE-BTTB
T ss_pred cEEEEeC----------CChHHhHHHHHHHHH--hCCCEEEECCCCC
Confidence 9998753 334445555555553 3557777765543
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.11 E-value=0.89 Score=39.47 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=59.0
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----CCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~~D~v~ 120 (252)
+.++.+||-.|+|. |..+..+++. |..+|+++|.++.-.+.+++.-. ..++...-.+. .....+.+|+|+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA----TATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC----ceEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 55677888899863 6666666665 55479999999988888765321 11111111111 001123689988
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..-. -...+....+.|+++|.+++...
T Consensus 265 d~~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 265 EMAG-------------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ECCC-------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 5211 12356667788999999887653
No 330
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.94 E-value=1.8 Score=36.66 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=60.0
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC-----CCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~~D~v~ 120 (252)
+.++.+||..|+| .|..+..++.....++++++.++...+.++..- +..+..+-... .......+|+|+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-----ADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-----CCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 5567788888876 477777777653237999999999888875531 11111111100 002345689888
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
... .....++++.+.|+++|.++....
T Consensus 238 d~~-------------g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 238 DFV-------------GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ECC-------------CCHHHHHHHHHHhhcCCEEEEECC
Confidence 431 113467788899999999987654
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.91 E-value=1.2 Score=38.50 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cccC-CCC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MSF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~~~-~~~-~~~~~~D~v 119 (252)
+.++.+||-.|+|. |..+..+++. |..+++++|.++.-.+.+++.-. -.++.. +..+ ... .....+|+|
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA----THTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 56778999998863 6666666665 55469999999988888865321 122211 1100 000 122358988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. -...++...+.+++||.+++...
T Consensus 250 id~~g-------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 250 IDAVG-------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EECCC-------------CHHHHHHHHHHhccCCEEEEECC
Confidence 84211 12346667788999999887654
No 332
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.76 E-value=3.6 Score=35.05 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=58.4
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.+||-.|+| .|..+..+++. |. ++++++.+++-.+.+++.-.+ .++ |..+. ..+.+|+++...
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~----~vi--~~~~~---~~~~~d~~i~~~ 231 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAA----SAG--GAYDT---PPEPLDAAILFA 231 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCc----eec--ccccc---CcccceEEEECC
Confidence 35677899999975 35565666655 45 799999999888877765221 111 11111 123578766421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. -...+....+.|+++|++++...
T Consensus 232 ~-------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 P-------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred C-------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 1 12357778889999999987664
No 333
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.59 E-value=0.59 Score=40.36 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=36.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~ 91 (252)
+-..++|+|+|.|.++..+.-+....|.+||-|....++|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 3458999999999999999877555899999998888877664
No 334
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.53 E-value=0.64 Score=38.65 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-c----ccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-D----VRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d----~~~~~~~~~~~~D~v~ 120 (252)
.++.+||-+|+|. |..+..+++. |..+++++|.++.-.+.+++.-.. .++.. + +.+. .....+|+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~--~~~~g~d~vi 192 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGL--QNGRGVDVAL 192 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHH--hCCCCCCEEE
Confidence 3567899998863 6666666665 554599999998887777764211 11110 0 1111 1223589988
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..-. -...++.+.+.|+++|.+++...
T Consensus 193 d~~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 193 EFSG-------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ECCC-------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 5211 13357777889999999987663
No 335
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.31 E-value=2.8 Score=35.15 Aligned_cols=75 Identities=12% Similarity=0.270 Sum_probs=48.7
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.++|-.|++.|. ++..+++.|. +++.++.+++.++.....+.....+..+.+|+.+.... ..+..|
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 87 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID 87 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5578888876542 5555566676 89999999887766555543223455566888764311 125689
Q ss_pred EEEeccch
Q 025475 118 AVIDKGTL 125 (252)
Q Consensus 118 ~v~~~~~l 125 (252)
+|+.+...
T Consensus 88 ~vI~nAG~ 95 (296)
T PRK05872 88 VVVANAGI 95 (296)
T ss_pred EEEECCCc
Confidence 99987654
No 336
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.15 E-value=1.5 Score=36.36 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=77.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCC-CCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~ 124 (252)
.+..|+-+| -.-..+..++..+ ..++..||+++..++..++..... ++++....|+++.- +.....||+++...+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 345799998 3334444444444 668999999999999888877543 47899999998863 223468999987543
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCC---cEEEEEEcCChhhhhhhc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPG---GIYMLITYGDPKARMIHL 170 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~g---G~l~i~~~~~~~~~~~~~ 170 (252)
+.+ .....++.+=...|+.- |++.++.-..+..+-..+
T Consensus 231 -eTi-------~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~ei 271 (354)
T COG1568 231 -ETI-------KALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREI 271 (354)
T ss_pred -hhH-------HHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHH
Confidence 223 45566777777788776 788887766555444444
No 337
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.12 E-value=3.7 Score=33.53 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCcEEEEcccC----c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN----A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~----G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|+++ | ..+..+++.|. +++.++.++...+..++.....+.+.++.+|+.+.... ..+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 56788889764 2 25555666676 78888888654333333222223455778888775311 1257
Q ss_pred eeEEEeccchhhh-----cCCCCChhhHHHH-----------HHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL-----MCGTNAPISASQM-----------LGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~-----~~~~~~~~~~~~~-----------l~~~~~~L~~gG~l~i~~ 159 (252)
.|+++.+..+... .....+.++..+. .+.+...|+.+|.++...
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 8999987643210 0011122333333 355566677778766543
No 338
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.98 E-value=0.93 Score=41.16 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=59.9
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----------CC-C----
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 110 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 110 (252)
++.+|+-+|+|. |..+..++.. |. .++++|.++...+.++..- .+++..|..+ +. +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lG-----a~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMG-----AEFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEeccccccccccccceeecCHHHHHH
Confidence 456999999995 6766666665 54 7999999999888777631 1232322211 00 0
Q ss_pred ----C--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 ----F--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ----~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+ .-..+|+|+..-.+. ....+.=+.+++.+.+|||+.++=..
T Consensus 237 ~~~~~~e~~~~~DIVI~Talip-------G~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIP-------GKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccC-------CCCCCeeehHHHHhhCCCCCEEEEee
Confidence 0 124589997643221 11233345777889999999876443
No 339
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.93 E-value=1.8 Score=36.97 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc----cccCC-CCCCCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRDM-SFFEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~----d~~~~-~~~~~~~~D~ 118 (252)
.++++.+|.-+|||. |..+..-+.. |..+++++|++++-+++|++.=+ .+++.. |+.+. .+..++..|.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA----T~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA----THFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC----ceeecchhhhhHHHHHHHhcCCCCCE
Confidence 356788999999974 6655555554 67799999999999999987632 233322 12111 1123345677
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++.. . .....++...+.+.++|..+++....+.
T Consensus 258 ~~e~-----~--------G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 258 AFEC-----V--------GNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred EEEc-----c--------CCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 6531 1 1122566667777779998887765554
No 340
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.88 E-value=1.9 Score=35.63 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=64.0
Q ss_pred hhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEcccc
Q 025475 38 ALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDG------YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVR 106 (252)
Q Consensus 38 ~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~ 106 (252)
.+...+... +.++..++|+|||.|.++.+++... ...++.||....=. .+...+... +.++=+..|+.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence 344444443 4567799999999999999988752 34799999854211 222222221 24566677777
Q ss_pred CCCC--CCC---CCee-EEEeccchhhhcCCCCChhhHHHHHHHHHH---cccCCcEEEEEEc
Q 025475 107 DMSF--FED---ESFD-AVIDKGTLDSLMCGTNAPISASQMLGEVSR---LLKPGGIYMLITY 160 (252)
Q Consensus 107 ~~~~--~~~---~~~D-~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~---~L~~gG~l~i~~~ 160 (252)
++.- ++. ..-. ++++. | +|+...+--++.+++.... -.+..|.++..-.
T Consensus 84 dl~l~~~~~~~~~~~~vv~isK----H-LCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CC 141 (259)
T PF05206_consen 84 DLDLSKLPELQNDEKPVVAISK----H-LCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCC 141 (259)
T ss_pred ccchhhcccccCCCCcEEEEEc----c-ccccchhHHHHhhccCccccccCCccCeEEEEeCC
Confidence 6540 111 1112 33333 3 4665554444444333322 2346777776543
No 341
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.51 E-value=1.9 Score=36.16 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=58.4
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---------CCCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~~ 116 (252)
.+..||--|+|.|. .+..++++|. +++..|++++..+...+.+++.+.++...+|+.+..+ -.-+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence 45689999998874 7788888876 8999999988777776666544578889999987642 124678
Q ss_pred eEEEeccchh
Q 025475 117 DAVIDKGTLD 126 (252)
Q Consensus 117 D~v~~~~~l~ 126 (252)
|+++.+..+-
T Consensus 116 ~ILVNNAGI~ 125 (300)
T KOG1201|consen 116 DILVNNAGIV 125 (300)
T ss_pred eEEEeccccc
Confidence 9999886543
No 342
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.29 E-value=0.68 Score=43.68 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc-------------CCCcEEEEeCCH---HHHHHHHH-----------hhc-------C-
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-------------GYEDIVNIDISS---VAIDMMKM-----------KYE-------E- 94 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-------------~~~~v~~vD~s~---~~i~~a~~-----------~~~-------~- 94 (252)
.-+|+|+|=|+|.+.....+. ..-+++++|..| +.+..+.. ... +
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 359999999999865554421 023789999643 33332221 110 0
Q ss_pred ------CC--CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCC-CChhhH-HHHHHHHHHcccCCcEEEEEE
Q 025475 95 ------IP--QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT-NAPISA-SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 ------~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~-~~~~~~-~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ .+++..+|+.+........+|+++... |++ .+++.. ..+++.+.+++++||.+.-.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~------FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG------FAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC------CCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 01 244666777654211234699999764 222 244433 778999999999999987543
No 343
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.64 E-value=5 Score=28.20 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred ccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccchhhhcCC
Q 025475 58 CGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTLDSLMCG 131 (252)
Q Consensus 58 ~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l~~~~~~ 131 (252)
||.|..+..+++. +..+++.+|.+++.++.++... +.++.+|..+... ..-..++.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 4455555555544 3348999999999988887663 6899999987531 23346888776321
Q ss_pred CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 132 TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ +...-.+-...+-+.|...+++....
T Consensus 72 --~-d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 72 --D-DEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp --S-HHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred --C-HHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 1 22222333344556777777766543
No 344
>PLN02740 Alcohol dehydrogenase-like
Probab=89.59 E-value=2.3 Score=37.09 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=58.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D 117 (252)
.+.++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.-. -.++... ..+ ......+.+|
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI----TDFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC----cEEEecccccchHHHHHHHHhCCCCC
Confidence 356778999999863 6666666665 55469999999988888865311 1222111 111 0001122689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..-. -...+......+++| |.+++...
T Consensus 271 vvid~~G-------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG-------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC-------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 9985321 123466666778886 88776553
No 345
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.56 E-value=0.58 Score=41.68 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC----CC--CCCCCeeE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM----SF--FEDESFDA 118 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~----~~--~~~~~~D~ 118 (252)
..+..+|-+|-|.|.+...+... +..++++|+++|.+++.++.++.-. .+.+++..|..+. .. ..+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34458899999999999888766 4569999999999999999987321 1233333333221 10 24557898
Q ss_pred EEeccc-h-hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGT-L-DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~-l-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+...-- - .|-+...++.--...++..+..+|.|.|.+++--..+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 876421 1 1212333333445778899999999999998755433
No 346
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.42 E-value=1.1 Score=37.73 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=68.0
Q ss_pred CcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 51 SRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
.+|.-+|.|. |..+..++....++|+.+|+|.+-++.....+.. +++..--+..++. ..-...|+|+..-.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~--rv~~~~st~~~ie-e~v~~aDlvIgaVL----- 240 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG--RVHTLYSTPSNIE-EAVKKADLVIGAVL----- 240 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc--eeEEEEcCHHHHH-HHhhhccEEEEEEE-----
Confidence 4778888884 7777777776555999999999888877776632 4555555544443 22246888886322
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+....+.=..+++...||||+.++=+.
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 2344666677888899999999876543
No 347
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.41 E-value=8 Score=32.21 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=60.0
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------CCC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------EIP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~------------~v~~~~~d~~~~~~ 110 (252)
+|.-+|+|. +.++..++..|. +|+++|.+++.++.++.++. ... ++++ ..|. .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~---~- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL---D- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH---H-
Confidence 577889984 567777777776 89999999998876553321 111 1111 1111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
.-...|+|+.. -.++..-...++.++.+.++++..+.-.+.+.+..
T Consensus 79 -~~~~aDlVi~a--------v~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 79 -DLKDADLVIEA--------ATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred -HhccCCeeeec--------ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 12357888853 22233556789999999998887663333333333
No 348
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.05 E-value=8.1 Score=32.40 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=64.6
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCe----------E-EEccccCCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLK----------Y-LQMDVRDMSFF 111 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~----------~-~~~d~~~~~~~ 111 (252)
+|--+|+|+ +.++..++..|. +|+..|.+++.++.++.++.. .+.++ + ...|...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~---- 81 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD---- 81 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH----
Confidence 788899984 456666777776 899999999999887665421 11110 0 1122211
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcc-cCCcEEEEEEcCChhhhhhh
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~i~~~~~~~~~~~~ 169 (252)
-...|+|+.. +. .+.+-.+.++..+-.++ +|+..+.-.+...|......
T Consensus 82 -~~~~d~ViEa-v~-------E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 82 -FADRQLVIEA-VV-------EDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred -hCCCCEEEEe-cc-------cCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 1357888854 22 33377788889888888 66666655454555544433
No 349
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.04 E-value=3.5 Score=34.37 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=52.2
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+|.-+|+|. |.++..+.+.|. +|+++|.++..++.+...- .+.....+. . .-...|+|+..-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~---~--~~~~aDlVilavp----- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL---S--LLKDCDLVILALP----- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH---h--HhcCCCEEEEcCC-----
Confidence 567788884 567777777775 8999999998877776531 111111111 1 1235799987543
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
.....++++++...++++-.+
T Consensus 67 -----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCCcEE
Confidence 244456778888878766433
No 350
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=88.86 E-value=2.5 Score=35.36 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=57.7
Q ss_pred CcEEEEccc--CcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGCG--NALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~G--~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+|+-+|.| .|.+++.+...| ...+++.|.+....+.+...- +..... .+.........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~--~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELT--VAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccc--cchhhhhcccCCEEEEeccHH-
Confidence 478888988 467888888887 446899999888777766442 111110 111002234589999765544
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
....+++++...|++|..+.
T Consensus 76 ---------~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ---------ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ---------HHHHHHHHhcccCCCCCEEE
Confidence 44778888888888887654
No 351
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.85 E-value=2 Score=37.32 Aligned_cols=106 Identities=8% Similarity=0.018 Sum_probs=67.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHh---h--------cCCCCCeEEEccccCCCC--CC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMK---Y--------EEIPQLKYLQMDVRDMSF--FE 112 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~---~--------~~~~~v~~~~~d~~~~~~--~~ 112 (252)
+.++....|+|+|.|.....++..+ ..+-+|+++....-+.+..+ + +....++.+.+++.+... .-
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 5677799999999999999888774 55777888765433333222 1 112357777887766431 22
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
....++|+++++.-. +++.--+.++..-+++|-+++-...
T Consensus 270 ~~eatvi~vNN~~Fd--------p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFD--------PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred hhcceEEEEecccCC--------HHHHHhhHHHHhhCCCcceEecccc
Confidence 356889999876332 2222223477777887777765443
No 352
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.76 E-value=9.6 Score=31.90 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=55.3
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----------CC------------CeEEEcccc
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----------PQ------------LKYLQMDVR 106 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----------~~------------v~~~~~d~~ 106 (252)
.+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+++.+... .. +.. ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH-
Confidence 3688889984 3 46666667776 8999999999988765543210 01 111 1111
Q ss_pred CCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 107 DMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 107 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
. .-...|+|+..- ..+.+....+++++.+.++++..++
T Consensus 81 --~--~~~~aDlVieav--------~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 --E--SLSDADFIVEAV--------PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred --H--HhCCCCEEEEcC--------cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 113478888542 1222456888888888888776554
No 353
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.66 E-value=4.8 Score=32.87 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.++|-.|++.| .++..+++.|. +|+.++.++...+....... .++.++.+|+.+.... ..+..|
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 457888887544 25555666676 89999998765544433331 3577888998875311 124689
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+++.+..
T Consensus 83 ~lv~~ag 89 (261)
T PRK08265 83 ILVNLAC 89 (261)
T ss_pred EEEECCC
Confidence 9887654
No 354
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.59 E-value=1.4 Score=34.40 Aligned_cols=108 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---------------CCCeEEEccccCCCCCCCC
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---------------PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---------------~~v~~~~~d~~~~~~~~~~ 114 (252)
+|--+|.|- | ..+..+++.|+ +|+|+|++++-++..++-.... ++..+ ..|..+. -.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~a----i~ 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEA----IK 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHH----HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhh----hh
Confidence 566778873 4 46666677776 9999999999887766532110 11111 1111110 12
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
..|+++..-.--.-.-+.++.....++++.+...|+++-.+++-+...|..
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 467766532211111122344667889999999999866666655444443
No 355
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.48 E-value=7.6 Score=35.42 Aligned_cols=127 Identities=10% Similarity=0.203 Sum_probs=75.1
Q ss_pred eccchhhHHHHHhhC----CCCCcEEEEcccCcHhHHHHHHc---C--CCcEEEEeCCHHHHHHHHHhh--cCC--CCCe
Q 025475 33 YQRYSALRPFVRKYI----PTSSRVLMVGCGNALMSEDMVKD---G--YEDIVNIDISSVAIDMMKMKY--EEI--PQLK 99 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~----~~~~~vLD~G~G~G~~~~~l~~~---~--~~~v~~vD~s~~~i~~a~~~~--~~~--~~v~ 99 (252)
+.....+.+++...+ .++..+.|..||+|.+....... + ...++|.+..+.+...+..+. ... ....
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~ 276 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFN 276 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccC
Confidence 334455555554432 24468999999999988765432 2 246999999999999998874 211 1223
Q ss_pred EEEccccCCCCC-CCCCeeEEEeccchhhh-cCC-CC----------------ChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 100 YLQMDVRDMSFF-EDESFDAVIDKGTLDSL-MCG-TN----------------APISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 100 ~~~~d~~~~~~~-~~~~~D~v~~~~~l~~~-~~~-~~----------------~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...+|....+.. ...+||+|+++..+.-. ..+ .+ ....-..++..+...|++||...++-
T Consensus 277 ~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 277 IINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred cccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 334443332112 34569999988765421 001 00 01122456677788999999755544
No 356
>PLN02827 Alcohol dehydrogenase-like
Probab=88.39 E-value=2.3 Score=37.12 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=57.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-----cccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-----DVRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+|. |..+..+++. |...++++|.++.-.+.+++.-. -.++.. +..+ +.....+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa----~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV----TDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----cEEEcccccchHHHHHHHHHhCCCCC
Confidence 356778999998863 6666666655 55468999999888777755321 112211 1100 0001122589
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~ 159 (252)
+|+..-. -...+....++|++| |.+++..
T Consensus 266 ~vid~~G-------------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 266 YSFECVG-------------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEEECCC-------------ChHHHHHHHHhhccCCCEEEEEC
Confidence 8885311 122466677788998 9987754
No 357
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.26 E-value=8.4 Score=32.59 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=58.7
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh--h--cCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMK--Y--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~--~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++|+-+|+|. |.++..|.+.|. +|+.++.+++.++..++. + ............... + ...+.+|+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~-~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-A-DAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-c-ccccccCEEEEECC
Confidence 4799999994 456777777665 899999987666655542 1 111111111111111 1 12347899886421
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
- .+...+++.+...+.++..++....+
T Consensus 80 ~----------~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 80 A----------YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred H----------HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 1 24467788889999998877776654
No 358
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.24 E-value=2.6 Score=36.91 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=49.6
Q ss_pred CcEEEEcccC-cHhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC--CCCCeeEEEeccc
Q 025475 51 SRVLMVGCGN-ALMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKGT 124 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~~~-l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~~ 124 (252)
++||-+|||. |+.... +++.+..+|+..|.+++..+.+..... ++++..+.|+.+.+.. .-..+|+|+....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4799999974 654444 455565699999999888777766542 3788999999887421 1123588887544
No 359
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.22 E-value=2.6 Score=35.81 Aligned_cols=93 Identities=19% Similarity=0.391 Sum_probs=56.3
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~~~~~~~~~~D~v~~~~ 123 (252)
++.+||..|||. |..+..+++. |..++++++.++...+.++..-. -.++..+ +.... ...+.+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~----~~vi~~~~~~~~~~~-~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA----DETVNLARDPLAAYA-ADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC----CEEEcCCchhhhhhh-ccCCCccEEEECC
Confidence 567888888764 6666666655 55478999999888776655311 1111111 11121 1223589998532
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ....++.+.+.|+++|.++...
T Consensus 240 g-------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 G-------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1234677789999999988654
No 360
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=88.16 E-value=0.67 Score=37.04 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRD 107 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~ 107 (252)
+.-|.++|.|.|..+..+++.+..+...|+.++..+.-.+...+..+ ...++..|+..
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 44799999999999999999987799999999887776665543322 56666677654
No 361
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.05 E-value=2.9 Score=34.43 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHH
Q 025475 64 SEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQML 142 (252)
Q Consensus 64 ~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l 142 (252)
++.+.+.| ..+|+++|.++..++.+++. +-+.-...+.... ..+|+|+..-+. .....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~~~~~~~~~~-----~~~DlvvlavP~----------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIIDEASTDIEAV-----EDADLVVLAVPV----------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSSEEESHHHHG-----GCCSEEEE-S-H----------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCeeeccCCHhHh-----cCCCEEEEcCCH----------HHHHHHH
Confidence 55667776 56999999999998888655 2222222221112 246999975443 5568899
Q ss_pred HHHHHcccCCcEEEEEE
Q 025475 143 GEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 143 ~~~~~~L~~gG~l~i~~ 159 (252)
+++...+++|+.+.=+.
T Consensus 63 ~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHCGS-TTSEEEE--
T ss_pred HHhhhhcCCCcEEEEeC
Confidence 99999999987765443
No 362
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.99 E-value=3.7 Score=35.14 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccCCCC-CCCCCee-EE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSF-FEDESFD-AV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~~~~-~~~~~~D-~v 119 (252)
..++.+||-.|+|. |..+..+++. |...+++++.+++-.+.+++.-. ..++..+ ...... .....+| +|
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA----MQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----ceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 45677899998863 6666666665 55458899999988877754311 1111111 000100 1223577 55
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.. . --...+....++|++||.+++...
T Consensus 234 ~d~-----~--------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 234 LET-----A--------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEC-----C--------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 531 1 112467778889999999888653
No 363
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.98 E-value=7.1 Score=31.70 Aligned_cols=72 Identities=11% Similarity=0.249 Sum_probs=48.1
Q ss_pred cEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC----C------CCCeeE
Q 025475 52 RVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----E------DESFDA 118 (252)
Q Consensus 52 ~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~----~------~~~~D~ 118 (252)
++|-.|++.| .++..+++.|. +|++++.++..++....... ..++.++++|+.+.... . .++.|+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 5788887643 25555666676 89999999887766655443 23678899999874311 0 356899
Q ss_pred EEeccch
Q 025475 119 VIDKGTL 125 (252)
Q Consensus 119 v~~~~~l 125 (252)
|+.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 9876543
No 364
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.59 E-value=3.2 Score=36.80 Aligned_cols=89 Identities=10% Similarity=0.164 Sum_probs=56.1
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
-++.+|+-+|+|. |......++. |. +|+.+|.++.-...|+.. + .... +..+. . ..+|+|+..-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G-~~~~--~~~e~--v--~~aDVVI~atG- 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----G-YEVM--TMEEA--V--KEGDIFVTTTG- 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----C-CEEc--cHHHH--H--cCCCEEEECCC-
Confidence 3677999999995 7666655554 55 899999998766666543 1 1211 11111 1 24799986321
Q ss_pred hhhcCCCCChhhHHHHHHH-HHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGE-VSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~i~~~~ 161 (252)
. ..++.. ..+.+++||+++.....
T Consensus 267 -----------~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 -----------N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -----------C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 223444 47889999999876643
No 365
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.56 E-value=3.9 Score=34.54 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=75.4
Q ss_pred HHHHHhhCCCC-CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-----CCeEEEccccCCC--C-
Q 025475 40 RPFVRKYIPTS-SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-----QLKYLQMDVRDMS--F- 110 (252)
Q Consensus 40 ~~~~~~~~~~~-~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-----~v~~~~~d~~~~~--~- 110 (252)
-+.+.+.+..+ ..|+-+|||-=.=...+-......|+=+|. |+.++.=++.++... ..+++..|+++.. .
T Consensus 82 D~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~ 160 (297)
T COG3315 82 DDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA 160 (297)
T ss_pred HHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence 34455555544 589999999533222222211124555554 677777666665543 7899999998432 1
Q ss_pred -----CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 -----FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 -----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+....--++++-+.+.++ +++...++++.|.....+|..++...
T Consensus 161 L~~~G~d~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 161 LAAAGFDRSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred HHhcCCCcCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 123445678888999999 88999999999999988887776654
No 366
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.49 E-value=6.8 Score=33.30 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cccCCCC-CCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRDMSF-FEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~~~~~~-~~~~~~D~v~ 120 (252)
+.++.+||-.|+| .|..+..+++. |..++++++.+++-.+.+++.-.. .++.. +...... .....+|+|+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 4567788888876 35566666655 553499999999888777654211 11111 1111100 1233689998
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... -...+....+.|+++|.+++...
T Consensus 237 d~~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 237 ECSG-------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ECCC-------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 5311 12345666788999999887653
No 367
>PRK08324 short chain dehydrogenase; Validated
Probab=87.48 E-value=3.9 Score=38.76 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.+.+||-.|++. |. ++..+++.|. +|+++|.++...+.+...+....++.++.+|+.+.... ..+.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 346888888643 33 4444555676 89999999877666655443223677888888764311 12468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+|+.+..
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 99987654
No 368
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.83 E-value=8 Score=36.96 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEcc-----c---cCCCCCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMD-----V---RDMSFFEDE 114 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d-----~---~~~~~~~~~ 114 (252)
+|.-+|+|+ +.++..++..|. +|+.+|.+++.++.+..++.. .+.++-...+ + .++. .-.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~ 391 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA--GFD 391 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH--Hhc
Confidence 788999995 346666677776 999999999998887765421 1111100000 0 1111 113
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
..|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 392 ~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~ 438 (714)
T TIGR02437 392 NVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTISISLLAK 438 (714)
T ss_pred CCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 58888864 34444 7889999999999999987766555545444433
No 369
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.82 E-value=7.7 Score=37.09 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=67.6
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~~ 110 (252)
+|.-+|+|+ ..++..++..|. +|+.+|.+++.++.+..++.. .+ ++++. .|. .
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~- 388 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY---A- 388 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---H-
Confidence 789999997 346666677776 999999999998887665421 01 12211 111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
.-...|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 389 -~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 389 -GFERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred -HhcCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 11358888854 33434 7889999999999999877765554555444443
No 370
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=86.55 E-value=4.6 Score=31.33 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=55.1
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCC--------CCCCCCe
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMS--------FFEDESF 116 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~--------~~~~~~~ 116 (252)
..|+.+|||-=.....+.... ...++-+|. |++++.-++.+... .+.+++.+|+.+.. .+.....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 389999999877777777752 335555555 55666665555432 13678999998632 0234556
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHH
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEV 145 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~ 145 (252)
-++++-+++.++ +++....+++.+
T Consensus 159 tl~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS------HHHHHHHHHHH
T ss_pred eEEEEcchhhcC-----CHHHHHHHHHHh
Confidence 788888889999 777777777654
No 371
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.46 E-value=6.7 Score=31.65 Aligned_cols=94 Identities=22% Similarity=0.380 Sum_probs=58.0
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~D~v~ 120 (252)
.++.+||..|+|. |..+..++.....++++++.++...+.++..-.. .++ +..+.. ......+|+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD----HVI--DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eec--cCCcCCHHHHHHHhcCCCCCEEE
Confidence 5677999999985 6666666665335899999998877777554211 111 111110 01235699998
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... . ...+..+.+.|+++|.++....
T Consensus 207 ~~~~------------~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG------------G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC------------C-HHHHHHHHHhcccCCEEEEEcc
Confidence 5321 0 1346667788899999887653
No 372
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.13 E-value=15 Score=30.75 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=56.5
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCe----------E-EEccccCCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLK----------Y-LQMDVRDMSFF 111 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~----------~-~~~d~~~~~~~ 111 (252)
+|.-+|+|. +.++..++..|+ +|+.+|.+++.++.+.+.... ...+. + ...+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA---- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH----
Confidence 577889884 346666667776 899999999998887654311 00010 0 1111111
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-...|+|+..-. .+.+....++.++.+.++++..+.+.+
T Consensus 78 ~~~~aD~Vi~avp--------e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 AVADADLVIEAVP--------EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred hhcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1235788885422 122445677888888888876654433
No 373
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.07 E-value=6.5 Score=33.63 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----CC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~~-~~~~~~D~v 119 (252)
++++.+||-.|+| .|..+..+++. |...++++|.++.-.+.+++.-. ..++...-.+. .. .....+|+|
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 5667788888876 35666666665 55469999999887777765311 11111111111 00 123458988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..- .-...+..+.+.|+++|.++...
T Consensus 240 ld~~-------------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 240 IIAG-------------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EECC-------------CCHHHHHHHHHHhhcCCEEEEec
Confidence 8421 11235778888899999988654
No 374
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=86.00 E-value=4.5 Score=32.95 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=55.1
Q ss_pred CCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHH-------------------HHHHHhhcC-CCCCeEEEccccC
Q 025475 50 SSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAI-------------------DMMKMKYEE-IPQLKYLQMDVRD 107 (252)
Q Consensus 50 ~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i-------------------~~a~~~~~~-~~~v~~~~~d~~~ 107 (252)
..+|+-+|+| .|+++...+.+ |..+++.+|.+.-.+ +.+++++.. +|++++...+.+-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 4579999986 58877766554 788999999865332 233333332 3456655554432
Q ss_pred CC----CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHc
Q 025475 108 MS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148 (252)
Q Consensus 108 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (252)
.+ ++....||.|+- +++.+ .....++..+++.
T Consensus 110 t~en~~~~~~~~~DyvID--aiD~v-------~~Kv~Li~~c~~~ 145 (263)
T COG1179 110 TEENLEDLLSKGFDYVID--AIDSV-------RAKVALIAYCRRN 145 (263)
T ss_pred CHhHHHHHhcCCCCEEEE--chhhh-------HHHHHHHHHHHHc
Confidence 21 134457999984 45555 6666677766653
No 375
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.87 E-value=6.7 Score=32.73 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~-~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++.|. ++..++++|. +++.++.++. ..+.....+.. ..++.++.+|+.+.... ..+.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4578888876542 5555666676 7888887642 23333233322 23577888998764311 0146
Q ss_pred eeEEEeccchhhh--cCCCCChh-----------hHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL--MCGTNAPI-----------SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~--~~~~~~~~-----------~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+|+.+...... .....+.+ ....+++.+.+.++++|.+++..
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 7988866543211 00111112 22444455566666777766644
No 376
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.64 E-value=18 Score=29.74 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCcEEEEcccC----cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN----AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~----G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|++. |. .+..+++.|. +++.++.+....+.+++.....+.+.++.+|+.+.... .-++
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 84 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK 84 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence 45788888764 32 5666777776 78888876433333333322223456788898774311 1256
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 85 iD~linnAg~ 94 (262)
T PRK07984 85 FDGFVHSIGF 94 (262)
T ss_pred CCEEEECCcc
Confidence 8999987654
No 377
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.31 E-value=7.5 Score=31.81 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|++. |. ++..++..|. +|++++.++..++.....+.. ..++.++.+|+.+.... ..+..
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 55788888643 22 4445556666 799999988766554443322 23567788888764311 12457
Q ss_pred eEEEecc
Q 025475 117 DAVIDKG 123 (252)
Q Consensus 117 D~v~~~~ 123 (252)
|+++.+.
T Consensus 88 D~vi~~a 94 (264)
T PRK07576 88 DVLVSGA 94 (264)
T ss_pred CEEEECC
Confidence 9998654
No 378
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.15 E-value=12 Score=31.23 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=55.4
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMS 109 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~ 109 (252)
.+|.-+|+|. +.++..++..|. +|+..|.+++.++.+...... .. ++++ ..+. .
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~ 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDL---E 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCH---H
Confidence 4688889984 346666677776 899999999988776543210 01 1111 1122 1
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
. -...|+|+..-. .+.+....+++++...++++..++
T Consensus 80 -~-~~~aD~Vieavp--------e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 80 -D-LADCDLVIEAAT--------EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -H-hcCCCEEEEcCc--------CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 135788885421 122446677888888888877665
No 379
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.15 E-value=7.4 Score=37.34 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=68.1
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~~ 110 (252)
+|--+|+|+ +.++..++..|. +|+..|.+++.++.+..++.. .+ ++++. .|. .
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~- 410 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY---S- 410 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---H-
Confidence 788999995 345666667776 999999999999887765521 01 11111 111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
.-...|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 411 -~~~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 460 (737)
T TIGR02441 411 -GFKNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA 460 (737)
T ss_pred -HhccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 11357888853 33444 7889999999999999988776565555544443
No 380
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.13 E-value=4.4 Score=35.12 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=58.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-----cccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-----DVRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+|. |..+..+++. |..+++++|.++.-.+.+++.-.. .++.. +..+ ......+.+|
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCC
Confidence 356778999999863 6666666665 554799999999988888654211 11111 1100 0001123588
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..- .-...+....+.++++ |.+++...
T Consensus 258 ~vid~~-------------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECI-------------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECC-------------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 888421 1123566677888886 98877654
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=84.88 E-value=8.4 Score=30.89 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC----C-----CCCe
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF----E-----DESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~----~-----~~~~ 116 (252)
+.++|-.|++. |. ++..++++|. ++++++.+++..+.....+.. ..++.++.+|+.+.... . -+..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45788777643 22 3344455565 799999887765555444322 23678888998774311 0 1468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (250)
T PRK12939 86 DGLVNNAG 93 (250)
T ss_pred CEEEECCC
Confidence 98887654
No 382
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.86 E-value=8.1 Score=32.62 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=53.4
Q ss_pred CcEEEEcccC--cHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+|.-+|+|. +.++..+...|. .+++++|.+++..+.++.. +.......+..+ .-...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~~~~~~~~~~----~~~~aDvViiavp~-- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLGDRVTTSAAE----AVKGADLVILCVPV-- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCCceecCCHHH----HhcCCCEEEECCCH--
Confidence 4788899885 345566666663 4899999999877766542 111111111111 11357999865332
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.....++.++...++++..++.
T Consensus 77 --------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 --------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred --------HHHHHHHHHHHhhCCCCCEEEe
Confidence 3335667777777888876544
No 383
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.81 E-value=17 Score=30.45 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=56.3
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------CCCCC-----------eEEEccccCCCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------EIPQL-----------KYLQMDVRDMSF 110 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~~v-----------~~~~~d~~~~~~ 110 (252)
.+|.-+|+|. | .++..++..|. +|+++|.+++.++.+++.+. ..+.+ .....+. .
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL---E- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH---H-
Confidence 4688889984 3 56666667675 89999999988876655431 10100 0111111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
.-...|+|+.. -..+++....++.++...++++..++
T Consensus 80 -~~~~aD~Viea--------v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 80 -ELRDADFIIEA--------IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred -HhCCCCEEEEc--------CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11347888853 22234667788888888888876554
No 384
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.19 E-value=11 Score=30.31 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCH-HHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISS-VAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~-~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|+.. |. ++..+++.|. +|++++.+. ...+.....++. ..++.++.+|+.+.... .-+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 45788888743 33 4444555665 788887754 233333222221 23567888898775311 0135
Q ss_pred eeEEEeccchhhhcC-C-----CCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMC-G-----TNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~-~-----~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+|+.+........ . ..+......+++.+...++.+|.+++..
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 788876543211000 0 0111224556677777776667665543
No 385
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.04 E-value=12 Score=35.74 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=67.3
Q ss_pred CcEEEEcccC-c-HhHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMV-KDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDM 108 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~-~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~ 108 (252)
.+|.-+|+|+ | .++..++ ..|. .|+..|.+++.++.+..++.. .+ ++++. .| +
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~---~ 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD---Y 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC---h
Confidence 3799999996 3 4555566 5566 999999999998887665421 01 12211 11 1
Q ss_pred CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
. .-...|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 385 ~--~~~~aDlViEa-v~E~~-------~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~ 435 (708)
T PRK11154 385 R--GFKHADVVIEA-VFEDL-------ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA 435 (708)
T ss_pred H--HhccCCEEeec-ccccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH
Confidence 1 11358888854 33434 7889999999999999988766555555444433
No 386
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.72 E-value=1.9 Score=35.22 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=39.5
Q ss_pred chhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh
Q 025475 36 YSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY 92 (252)
Q Consensus 36 ~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~ 92 (252)
...+.+.|...++ ...+++|+-||+|.++..+...+ .+++.-|+++..+...+..+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc-cceeeeechHHHHHHHHHHH
Confidence 3456777777777 57799999999999999887654 48999999998887777544
No 387
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.34 E-value=9.3 Score=33.06 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=57.9
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D~ 118 (252)
+.++.+||-.|+| .|..+..+++. |...++++|.++.-.+.+++.-. -.++... ..+ ......+.+|+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA----TDCVNPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----CEEEcccccchHHHHHHHHHhCCCCcE
Confidence 5677889988875 36666666665 55479999999988887764311 1222111 100 00012236899
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...+....+.|+++ |.+++...
T Consensus 260 vid~~g-------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 260 TFECIG-------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEECCC-------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 985211 123566677888887 98887654
No 388
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.31 E-value=17 Score=30.65 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=57.3
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.+||-.|+| .|..+..+++. |. ++++++.++...+.+++.-. ..++...-..........+|+++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGA----DEVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCC----cEEeccCCcchHHhccCCCCEEEECC
Confidence 35667788889886 56666666665 54 79999999988777754211 11111110000000123588888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ....+..+.+.|+++|.++...
T Consensus 234 ~-------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 V-------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred C-------------cHHHHHHHHHhcccCCEEEEEC
Confidence 1 1235677788899999888764
No 389
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.26 E-value=12 Score=31.76 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=56.3
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cccC-CCC-CCCCCeeE
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MSF-FEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~~~-~~~-~~~~~~D~ 118 (252)
.++++.+||..|+| .|..+..+++. |...+++++.++...+.+++.-. ..++.. +..+ +.. .....+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA----TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC----cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 35567788887765 36666666665 43478888888877776664321 111111 1111 000 12356898
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++.... ....+..+.+.|+++|.++...
T Consensus 240 vld~~g-------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVG-------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccC-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 885311 1135777788999999987654
No 390
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.25 E-value=5.5 Score=32.11 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=46.3
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
+++-+|||. +.++..|.+.|+ .++.+|.+++.++..... ......+++|..+... ..-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577889984 346666666666 899999999887763331 1246888888887531 334578988864
No 391
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.98 E-value=12 Score=35.06 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=58.4
Q ss_pred CcEEEEcccC-cHhH-HHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccch
Q 025475 51 SRVLMVGCGN-ALMS-EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTL 125 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~-~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l 125 (252)
.+|+-+|+|. |... ..+.+++. +++.+|.+++.++.+++. ....+.+|..+... ..-++.|++++...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~~~- 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVITCN- 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEEeC-
Confidence 3677777774 5433 33344455 899999999999988753 46789999987531 23346788776321
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++.-..++.. .+.+.|+..+++....
T Consensus 474 --------d~~~n~~i~~~-~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 474 --------EPEDTMKIVEL-CQQHFPHLHILARARG 500 (601)
T ss_pred --------CHHHHHHHHHH-HHHHCCCCeEEEEeCC
Confidence 22222333333 3446677777765543
No 392
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.24 E-value=18 Score=30.16 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=54.1
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+|+-+|+|. | .++..+++.|. +|+.++.+++.++..++.-... ........-..+.. ....+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEecc---
Confidence 588899984 3 35555666665 8999999777666555431100 00000000011111 1256899886432
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+...+++.+...+.++..++....+
T Consensus 76 -------~~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 76 -------AYQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred -------cccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 134567788888888777666655443
No 393
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=82.22 E-value=14 Score=32.39 Aligned_cols=110 Identities=11% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE---ccccC-CCC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ---MDVRD-MSF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~---~d~~~-~~~-~~~~~~D~v 119 (252)
+.++.+||-.|+| .|..+..+++. |...++.+|.++.-++.+++.-. . .+.. .+..+ +.. .....+|+|
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga---~-~v~~~~~~~~~~~v~~~~~~~g~Dvv 258 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC---E-TVDLSKDATLPEQIEQILGEPEVDCA 258 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC---e-EEecCCcccHHHHHHHHcCCCCCcEE
Confidence 5667788778886 36666666665 55457777888887887776421 1 1111 01111 100 122358998
Q ss_pred EeccchhhhcC-CCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-.-..... -.....+....++...+++++||.+++...
T Consensus 259 id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 259 VDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred EECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 85322110000 000001223578888899999999988665
No 394
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.04 E-value=5.3 Score=34.37 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcc-c-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc----cccC-CCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGC-G-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRD-MSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~-G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~----d~~~-~~~~~~~~~D~v 119 (252)
+.++.+||-.|+ | .|..+..+++....++++++.++.-.+.++..+.. -.++.. +..+ ......+.+|+|
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF---DEAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC---CEEEECCCcccHHHHHHHHCCCCcEEE
Confidence 567789999987 3 67788877776323799999998877776633311 122211 1111 000112358988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.. . . ...+..+.+.|+++|.+++..
T Consensus 233 ~d~-----v-------G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 233 FDN-----V-------G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEC-----C-------C--HHHHHHHHHHhccCCEEEEEC
Confidence 853 1 1 135677888999999988754
No 395
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.97 E-value=21 Score=30.13 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc----ccC-CCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD----VRD-MSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d----~~~-~~~~~~~~~D~v 119 (252)
+.++.+||-.|+ |.|..+..+++....++++++.+++-.+.+++.-. -.++..+ ..+ ......+.+|+|
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF----DVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC----CEEEeccccccHHHHHHHhCCCCeEEE
Confidence 567789998884 46778777777632379999999888777765311 1122111 111 000122468998
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.. . . ...+....++|+++|.++...
T Consensus 212 ~d~-----~-------G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 212 FDN-----V-------G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEC-----C-------C--HHHHHHHHHHhCcCcEEEEec
Confidence 852 1 1 123567788999999998754
No 396
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.94 E-value=25 Score=29.03 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=44.0
Q ss_pred CCcEEEEccc----CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG----NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G----~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++.+|-.|++ .|. .+..+++.|. +++.++.+....+.+++.....+...++++|+.+.... ..+.
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~ 83 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK 83 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578888874 332 5555666676 78888888532222222222112115678898875311 1357
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 84 iDilVnnAG~ 93 (274)
T PRK08415 84 IDFIVHSVAF 93 (274)
T ss_pred CCEEEECCcc
Confidence 8999887654
No 397
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.93 E-value=19 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=30.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~ 91 (252)
.+|.-+|+|. +.++..++..|. +|+++|.+++.++.++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 4688889984 456666666665 899999999888877764
No 398
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.84 E-value=19 Score=29.63 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCcEEEEcccC--c---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN--A---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~--G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|++. | ..+..+++.|. +|+.++.+....+..++.....+....+++|+.+.... .-+.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK 85 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 45788888764 3 35666667776 78888876543333333222222234678888875311 1257
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 86 iD~lVnnAG~ 95 (271)
T PRK06505 86 LDFVVHAIGF 95 (271)
T ss_pred CCEEEECCcc
Confidence 8999887654
No 399
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.77 E-value=21 Score=30.55 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=57.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC--------CCeEEEccccCCCCCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP--------QLKYLQMDVRDMSFFED 113 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~--------~v~~~~~d~~~~~~~~~ 113 (252)
.+|.-+|+|+ ..++..++..|. +|+..|.+++.++.++..+.. .. ++++. .++.+ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~----av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA----CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH----Hh
Confidence 4788899994 456666777776 999999999988776554321 00 11111 11111 11
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
...|+|+.. + ..+.+-...++.++-+.++++-.|
T Consensus 82 ~~aDlViEa-v-------pE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 82 ADADFIQES-A-------PEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred cCCCEEEEC-C-------cCCHHHHHHHHHHHHHhCCCCeEE
Confidence 357888854 2 223367788999999999988743
No 400
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.40 E-value=17 Score=30.35 Aligned_cols=92 Identities=20% Similarity=0.341 Sum_probs=55.6
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------C------------CCCeEEEccccCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------I------------PQLKYLQMDVRDMS 109 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--------~------------~~v~~~~~d~~~~~ 109 (252)
+|.-+|+|. +.++..++..|. +|+.+|.+++.++.++..... . .+++ ...|..+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~-- 80 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE-- 80 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH--
Confidence 688889984 345555666665 899999999988887765311 0 0111 1112111
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.-...|+|+..-. + +.+....+++++...++++-.+..
T Consensus 81 --a~~~aDlVieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 --AVKDADLVIEAVP-E-------DPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --HhcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1135788886432 1 124567888888888877665533
No 401
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.35 E-value=20 Score=29.06 Aligned_cols=73 Identities=8% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCcEEEEccc----CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG----NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G----~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++ .|. .+..+++.|. +|+.++.+....+..++... ..+.++++|+.+.... .-+.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4578888875 332 5555666676 78888877543333332211 2567888999775311 1257
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 84 iD~lv~nAg~ 93 (252)
T PRK06079 84 IDGIVHAIAY 93 (252)
T ss_pred CCEEEEcccc
Confidence 8999887654
No 402
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.24 E-value=5.6 Score=34.38 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=56.6
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D~ 118 (252)
+.++.+||-.|+| .|..+..+++. |..+++++|.++.-.+.+++.-.. .++... ..+ ........+|+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~g~d~ 257 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT----DFINPKDSDKPVSEVIREMTGGGVDY 257 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC----cEeccccccchHHHHHHHHhCCCCCE
Confidence 5677889988875 35555555555 554799999998888877653111 111110 000 00011245899
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...+....+.|+++ |.+++...
T Consensus 258 vid~~g-------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 258 SFECTG-------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEECCC-------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 884211 123567777888875 98877653
No 403
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.99 E-value=18 Score=29.54 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=56.3
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.++|-.|+|. |..+..+++. |..++++++.+++..+.+++.-.. . .+.... ... .....+|+|+...
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~-~--~~~~~~-~~~--~~~~~~d~vl~~~ 167 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA-D--PVAADT-ADE--IGGRGADVVIEAS 167 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC-c--cccccc-hhh--hcCCCCCEEEEcc
Confidence 355677888888764 5566666655 442399999998887766654200 0 011000 011 1234589888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ....+....+.|+++|.++...
T Consensus 168 ~-------------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 168 G-------------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C-------------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1 1235677788899999987654
No 404
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.80 E-value=7.7 Score=33.51 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=57.4
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+| .|..+..+++. |..++++++.+++-.+.+++.-. ..++... ..+ ......+.+|
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV----TEFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcccccchhHHHHHHHHhCCCCC
Confidence 35677889999875 35566666655 54479999999988888765311 1122111 100 0001223588
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..- .....+....+.+++| |.+++...
T Consensus 260 ~vid~~-------------G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 260 YSFECT-------------GNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEEECC-------------CChHHHHHHHHHhhcCCCEEEEECc
Confidence 888421 1133566667788896 98887654
No 405
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.64 E-value=9.3 Score=32.71 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.+||-.|++.|. ++..+++.|. +|+.++.+++.++.....+.. ..++.++.+|+.+.... ..+..
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4578888875542 5555666676 799999998877666555433 23567788888764311 12568
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 86 D~lVnnAG~ 94 (330)
T PRK06139 86 DVWVNNVGV 94 (330)
T ss_pred CEEEECCCc
Confidence 999887643
No 406
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.62 E-value=6.9 Score=32.66 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+.+.....++..|||.-+|+|..+......+. .++++|+++.-++.+.+++..
T Consensus 213 ~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 213 ERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHh
Confidence 445555566788999999999999998888865 899999999999999998853
No 407
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.38 E-value=18 Score=29.07 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|+..| .++..+++.|. ++++++.++...+.....+.. ..++.++.+|+.+.... ..+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 457888886432 24444555665 899999987665554444322 23567788888875311 11358
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+|+.+...
T Consensus 85 d~vi~~ag~ 93 (250)
T PRK07774 85 DYLVNNAAI 93 (250)
T ss_pred CEEEECCCC
Confidence 999986653
No 408
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.37 E-value=24 Score=31.04 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=58.1
Q ss_pred CCCCCcEEEEc-cc-CcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEcccc---CCC----CC
Q 025475 47 IPTSSRVLMVG-CG-NALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVR---DMS----FF 111 (252)
Q Consensus 47 ~~~~~~vLD~G-~G-~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~---~~~----~~ 111 (252)
+.++.+|+-+| +| .|..+..+++. |..+++++|.++.-++.+++...... .......|.. ++. ..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 45667888887 44 57788777776 33479999999999888887532100 1111111111 110 01
Q ss_pred -CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 112 -EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 112 -~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
....+|+|+..-. -...+....+.++++|.+++.
T Consensus 253 t~g~g~D~vid~~g-------------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP-------------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC-------------CHHHHHHHHHHhccCCeEEEE
Confidence 2235888885211 123567778889988866553
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=80.27 E-value=8.4 Score=34.19 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=57.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcccc------------CCCCCCCCCe
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR------------DMSFFEDESF 116 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~------------~~~~~~~~~~ 116 (252)
++|.-+|.|. +.++..+++.|+ +|+++|.++..++..+... +.+...++. ... -.....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~-----~~~~e~~l~~~l~~~~~~g~l~~~-~~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGE-----IHIVEPDLDMVVKTAVEGGYLRAT-TTPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCC-----CCcCCCCHHHHHHHHhhcCceeee-cccccC
Confidence 4677888884 456666777776 8999999999877643211 111111100 000 011246
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|+..-.--.-.-+.++.......++.+...|++|-.+++.+...|
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 78775422110000011225566777888888888776666554444
No 410
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.19 E-value=4.1 Score=31.96 Aligned_cols=69 Identities=16% Similarity=0.322 Sum_probs=47.0
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+.++|-+|+- +|.....+++. ..+|+.+|+.|.+-.... ++++|... .. +..+.+|+|+.--.+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp------~~v~Fr~~----~~-~~~G~~DlivDlTGlG 110 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP------NNVKFRNL----LK-FIRGEVDLIVDLTGLG 110 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC------CCccHhhh----cC-CCCCceeEEEeccccC
Confidence 456799999996 79988888877 569999999997643322 24444332 22 4567789988755444
Q ss_pred hh
Q 025475 127 SL 128 (252)
Q Consensus 127 ~~ 128 (252)
-+
T Consensus 111 G~ 112 (254)
T COG4017 111 GI 112 (254)
T ss_pred CC
Confidence 33
No 411
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.19 E-value=9 Score=33.13 Aligned_cols=96 Identities=22% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE-ccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+||-.|+| .|..+..+++. |. ++++++.++.-...+.+.+ +...++. .+........ +.+|+|+..-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~---Ga~~vi~~~~~~~~~~~~-~~~D~vid~~ 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL---GADSFLVSTDPEKMKAAI-GTMDYIIDTV 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC---CCcEEEcCCCHHHHHhhc-CCCCEEEECC
Confidence 3467788889886 36677777766 44 7888887765332221111 1111111 0101111011 2478888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. -...+..+.+.|+++|.++....
T Consensus 256 g-------------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 S-------------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred C-------------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 1 12256677889999999887653
No 412
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.14 E-value=18 Score=30.53 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=57.1
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---CCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~~D~v~~ 121 (252)
+.++.+||..|+| .|..+..+++. |...+++++.+++..+.+++.-. -.++..+-.+. .......+|+++.
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA----TETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----eEEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 4567789998865 25555555555 44348999999888777754321 01221111110 0013346899985
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
... ....+..+.+.|+++|.++....
T Consensus 233 ~~~-------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 233 ATG-------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCC-------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 311 12456777888999999887653
No 413
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=80.06 E-value=18 Score=30.42 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v~ 120 (252)
+.++.+||-.|+ |.|..+..+++....++++++.+++-.+.+++.-. -.++...-.++. ......+|+|+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga----~~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGF----DAVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC----CEEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 567778888884 45777777777633379999999888777766311 122221111110 01224589888
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. . . ...+....+.|+++|.++...
T Consensus 217 d~-----~-------g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 217 DN-----V-------G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EC-----C-------C--HHHHHHHHHhhccCCEEEEEc
Confidence 42 1 1 135677888999999987653
No 414
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.97 E-value=8.7 Score=31.22 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=48.5
Q ss_pred cEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCeeEE
Q 025475 52 RVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFDAV 119 (252)
Q Consensus 52 ~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D~v 119 (252)
++|-.|++.|. ++..+++.|. +|+.++.++..++.....+....++.++.+|+.+.... ..+..|++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 57788876542 5555666676 79999999887766655554334678888998764310 12568998
Q ss_pred Eeccc
Q 025475 120 IDKGT 124 (252)
Q Consensus 120 ~~~~~ 124 (252)
+.+..
T Consensus 81 i~naG 85 (259)
T PRK08340 81 VWNAG 85 (259)
T ss_pred EECCC
Confidence 87654
No 415
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.92 E-value=17 Score=30.92 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCCC--CcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCee
Q 025475 47 IPTS--SRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFD 117 (252)
Q Consensus 47 ~~~~--~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D 117 (252)
+.++ .+||-.|+ |.|..+..+++. |..++++++.+++-.+.+++.+.. -.++..+-.++. ......+|
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHCCCCce
Confidence 4444 68888886 467787777776 443799999998877776654311 122211111110 01124689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+..-. . ..+..+.+.|+++|.++...
T Consensus 227 ~vid~~g------------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 227 VYFDNVG------------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEECCC------------c--HHHHHHHHHhccCCEEEEEe
Confidence 9985211 1 12467778899999988654
No 416
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=79.88 E-value=13 Score=32.51 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCCcEEEEcccCcH----hHHHHHHc--C--CCcEEEEeC----CHHHHHHHHHhhcC----CC-CCeEEEc---cccCC
Q 025475 49 TSSRVLMVGCGNAL----MSEDMVKD--G--YEDIVNIDI----SSVAIDMMKMKYEE----IP-QLKYLQM---DVRDM 108 (252)
Q Consensus 49 ~~~~vLD~G~G~G~----~~~~l~~~--~--~~~v~~vD~----s~~~i~~a~~~~~~----~~-~v~~~~~---d~~~~ 108 (252)
+...|+|+|.|.|. +...++.+ | .-++|+|+. +...++.+.+++.. .+ ..+|... +..++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 34489999999985 44445554 2 448999999 77777777776532 11 2333332 22222
Q ss_pred CC----CCCCCeeEEEeccchhhhcCCCCChhh-HHHHHHHHHHcccCCcEEE
Q 025475 109 SF----FEDESFDAVIDKGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 109 ~~----~~~~~~D~v~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~ 156 (252)
.. ...+.+=+|-+...+||+........+ +..+|+.+ +.|+|.-.++
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~ 241 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVL 241 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEE
Confidence 10 223334444455667888422222233 44455555 4578874443
No 417
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.41 E-value=16 Score=31.26 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=56.9
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE---ccccC-CCC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ---MDVRD-MSF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~---~d~~~-~~~-~~~~~~D~v 119 (252)
+.++.+||-.|+| .|..+..+++. |...+++++.+++..+.+++.-. -.++. .+..+ +.. .....+|+|
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga----~~~i~~~~~~~~~~l~~~~~~~~~d~v 245 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA----TIVLDPTEVDVVAEVRKLTGGGGVDVS 245 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEECCCccCHHHHHHHHhCCCCCCEE
Confidence 4567788888865 35555555555 44478999999888877755311 11111 11100 000 122348999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.... ....++.+.+.|+++|.++....
T Consensus 246 id~~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 246 FDCAG-------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred EECCC-------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 85311 12356778888999999887654
No 418
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.32 E-value=29 Score=32.65 Aligned_cols=65 Identities=17% Similarity=0.329 Sum_probs=46.5
Q ss_pred CcEEEEcccC-cHhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 51 SRVLMVGCGN-ALMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~~~-l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
.+|+-+|||. |..... +.+.+. +++.+|.+++.++.+++. ...++.+|..+..- ..-+.+|++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 4788889884 664443 444455 899999999999988763 46789999988641 22346788775
No 419
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=79.30 E-value=19 Score=30.84 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCCCcEEEEcccCcH----hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC--CCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNAL----MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE--DESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~----~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~--~~~~D~v~ 120 (252)
-+.+++||-.|+ +|. ++..+++.|. +|++++.++.........+...++++++.+|+.+...+. -..+|+|+
T Consensus 7 ~~~~~~vLVtG~-~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 7 ESATGTYCVTGA-TGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccCCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 356678998885 344 3444445566 899888776543333333222246788899988753211 12478887
Q ss_pred eccch
Q 025475 121 DKGTL 125 (252)
Q Consensus 121 ~~~~l 125 (252)
-....
T Consensus 85 h~A~~ 89 (353)
T PLN02896 85 HVAAS 89 (353)
T ss_pred ECCcc
Confidence 65543
No 420
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.30 E-value=11 Score=30.58 Aligned_cols=75 Identities=12% Similarity=0.255 Sum_probs=49.9
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC--------CCCCeeE
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--------EDESFDA 118 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~--------~~~~~D~ 118 (252)
+.++|-.|++.| .++..++++|. +|++++.++..++..........++.++.+|+.+.... ..+..|+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 83 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV 83 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence 457888887653 25566667776 89999999877666655443334678888998875311 1246799
Q ss_pred EEeccch
Q 025475 119 VIDKGTL 125 (252)
Q Consensus 119 v~~~~~l 125 (252)
++.+...
T Consensus 84 lv~~ag~ 90 (263)
T PRK09072 84 LINNAGV 90 (263)
T ss_pred EEECCCC
Confidence 8887543
No 421
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.16 E-value=18 Score=31.90 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=61.9
Q ss_pred CcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-------------CCCC-CCC
Q 025475 51 SRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-------------MSFF-EDE 114 (252)
Q Consensus 51 ~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-------------~~~~-~~~ 114 (252)
.+|--+|=|- |. ++..++.+|. +|+|+|+++..++..++-- ..+..-+... ..++ .-.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~-----~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGE-----SYIEEPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCc-----ceeecCcHHHHHHHHHhcCCceEecChhhcc
Confidence 4677777663 43 4555566676 9999999999887765421 1222211111 0001 112
Q ss_pred CeeEEEe-ccc-hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 115 SFDAVID-KGT-LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 115 ~~D~v~~-~~~-l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
..|+++. -.+ +.. ...++.+...+..+.+...|++|-.+++-+...|.
T Consensus 84 ~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 84 ECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred cCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 4566544 222 222 23466677889999999999988777765544443
No 422
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.06 E-value=30 Score=30.37 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=57.3
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH-HHhhcCCC----CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM-KMKYEEIP----QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a-~~~~~~~~----~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+|+-++-..|.++..++..+. +.+ -+....+.+ +.+++..+ .++.+ +..+. ++ +.+|+|+...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~--~~-~~~d~vl~~~--- 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSI-GDSYISELATRENLRLNGIDESSVKFL--DSTAD--YP-QQPGVVLIKV--- 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---Cee-ehHHHHHHHHHHHHHHcCCCcccceee--ccccc--cc-CCCCEEEEEe---
Confidence 799999999999999996543 222 122222222 33332221 12222 22221 23 3589999543
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+.+.......+..+.+.|.+|+.+++.....
T Consensus 115 -----PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 115 -----PKTLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred -----CCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 3444666778899999999999988776543
No 423
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.03 E-value=5 Score=35.16 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY 92 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~ 92 (252)
+.++.+||-|.+|.-+....+ ..+..+|++||+||..+...+-+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL-~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYL-LAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHHHHH-hcCCceEEEEeCCHHHHHHHHHHH
Confidence 467779999988765555554 444569999999999887776654
No 424
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=78.94 E-value=14 Score=31.63 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=33.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHh
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~ 91 (252)
+.++.+||-.|+|. |..+..+++. |. +++++|.++.-++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence 56778999999964 6666666665 45 799999999888887653
No 425
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.71 E-value=19 Score=33.26 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=44.8
Q ss_pred CcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 51 SRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 51 ~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
.+++-+|||. |. .+..+.++|. +++.+|.+++.++.+++. ....+.+|..+... ..-+++|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-----GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 4678888874 44 3333444455 899999999998888753 46889999987531 22346887664
No 426
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.65 E-value=6.7 Score=28.75 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=44.0
Q ss_pred CCCcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.++|-+|+|. | .....+...|..+++.+..+.+-.+...+.+.. .++.+ .++.+.. ..-..+|+|+..-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~-~~~~~--~~~~~~~-~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG-VNIEA--IPLEDLE-EALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG-CSEEE--EEGGGHC-HHHHTESEEEE-SST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc-cccce--eeHHHHH-HHHhhCCeEEEecCC
Confidence 466999999974 3 355556666877899999997755554444411 12333 3333332 112469999975443
No 427
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.56 E-value=22 Score=30.24 Aligned_cols=96 Identities=20% Similarity=0.338 Sum_probs=57.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc----------ccCCCCCCC
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD----------VRDMSFFED 113 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d----------~~~~~~~~~ 113 (252)
.+.++.+||-.|+|. |..+..+++. |...+++++-++...+.++..-. -.++..+ +.+. ...
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~~~~~~~~--~~~ 232 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA----THTVNVRTEDTPESAEKIAEL--LGG 232 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC----cEEeccccccchhHHHHHHHH--hCC
Confidence 356777888877754 6666666665 55338889888877776654311 1111111 1111 233
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..+|+|+.... -...+....+.|+++|.++....
T Consensus 233 ~~~d~vld~~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 233 KGPDVVIECTG-------------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCCEEEECCC-------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 45899985311 12256777889999999876543
No 428
>PRK10083 putative oxidoreductase; Provisional
Probab=78.18 E-value=9.1 Score=32.45 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHH-c-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVK-D-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~-~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~~~ 122 (252)
+.++.+||-.|+| .|..+..+++ . |...++++|.+++-.+.+++.-.+ .-+.....++.+ +. -....+|+|+..
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~-~~g~~~d~vid~ 235 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALE-EKGIKPTLIIDA 235 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHh-cCCCCCCEEEEC
Confidence 5567789999975 3566666666 3 765688999998888777654211 001111111111 11 011124566642
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .-...+....+.|+++|.++....
T Consensus 236 ~-------------g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 236 A-------------CHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred C-------------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 112356777889999999887653
No 429
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.03 E-value=22 Score=28.37 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.++|-.|++.| . ++..+++.|. ++++++.++..++...+.+. .++.++++|+.+.... ..+..|
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 457888887543 2 4555566676 89999988766555444432 2567778887764310 124689
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+|+.+..
T Consensus 83 ~vi~~ag 89 (249)
T PRK06500 83 AVFINAG 89 (249)
T ss_pred EEEECCC
Confidence 8887654
No 430
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.94 E-value=24 Score=29.84 Aligned_cols=98 Identities=11% Similarity=0.196 Sum_probs=53.4
Q ss_pred CCcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC-CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 50 SSRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE-IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 50 ~~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++|+-+|+|. |.++..+++.|. +|+.+..++. +..+.+- .. .++..+........+ .....+|+|+..-
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGL 80 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEe
Confidence 35899999994 456666777665 7888887652 2222211 00 011111111111111 1234689988643
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
-.+ +..++++.+..++++++.++....+
T Consensus 81 K~~----------~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 81 KTT----------ANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred cCC----------ChHhHHHHHhhhcCCCCEEEEecCC
Confidence 222 2356777777888899887665544
No 431
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=77.74 E-value=27 Score=29.20 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=51.8
Q ss_pred cEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCC-CCCeEEEcccc-CCCCCCCCCeeEEEeccc
Q 025475 52 RVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEI-PQLKYLQMDVR-DMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 52 ~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~~-~~v~~~~~d~~-~~~~~~~~~~D~v~~~~~ 124 (252)
+|+-+|+|. |. ++..+++.|. +|+.++. ++.++..++.- ... .... ...... +.. .....+|+|+..--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~-~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAV-VPGPVITDPE-ELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEE-ecceeecCHH-HccCCCCEEEEEec
Confidence 578889985 43 5666666665 8999998 66555554321 000 0000 011111 111 11256898876422
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+...+++.+...+.++..++....+
T Consensus 78 ----------~~~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 78 ----------AYQLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred ----------ccCHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 134566777888878777666554433
No 432
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.72 E-value=11 Score=33.50 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|+-+|+|. |......+.. |. +|+.+|.++.....+... ..++ .++.+. . ..+|+|+..-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~-----G~~v--~~l~ea--l--~~aDVVI~aTG-- 276 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMD-----GFRV--MTMEEA--A--ELGDIFVTATG-- 276 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhc-----CCEe--cCHHHH--H--hCCCEEEECCC--
Confidence 577999999984 5544444443 55 899999988644333221 1121 122222 1 25899986321
Q ss_pred hhcCCCCChhhHHHHHH-HHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLG-EVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~i~~~~~ 162 (252)
. ..++. +....+|+|++++......
T Consensus 277 ----------~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 ----------N-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ----------C-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 1 22444 6778899999888766544
No 433
>PLN00203 glutamyl-tRNA reductase
Probab=77.14 E-value=21 Score=32.71 Aligned_cols=105 Identities=16% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+.+|+-+|+|. |. .+..+...|..+++.++.+++..+.....+. .+.+...+..+.. ..-..+|+|++.-.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---g~~i~~~~~~dl~-~al~~aDVVIsAT~--- 338 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---DVEIIYKPLDEML-ACAAEADVVFTSTS--- 338 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---CCceEeecHhhHH-HHHhcCCEEEEccC---
Confidence 56899999973 33 3333444566689999999876665555442 1222222222222 11246899987432
Q ss_pred hcCCCCChhhHHHHHHHHHHcccC-CcEEEEEEcCChhh
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKP-GGIYMLITYGDPKA 165 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~i~~~~~~~~ 165 (252)
.+.+--....++.+...-+. +..+++.+..-|..
T Consensus 339 ----s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 339 ----SETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred ----CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 11222334444444322111 33477788777653
No 434
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.01 E-value=39 Score=27.54 Aligned_cols=74 Identities=22% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCcEEEEcccC----cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---------CCCCC
Q 025475 50 SSRVLMVGCGN----AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~----G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~ 115 (252)
+..+|-.|++. |. .+..+++.|. +|+.++.++...+.+++.....+...++++|+.+... ..-+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS 86 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45788888854 32 4556667776 7888887743322333222221223456788877531 11257
Q ss_pred eeEEEeccc
Q 025475 116 FDAVIDKGT 124 (252)
Q Consensus 116 ~D~v~~~~~ 124 (252)
.|+++.+..
T Consensus 87 iDilVnnag 95 (260)
T PRK06603 87 FDFLLHGMA 95 (260)
T ss_pred ccEEEEccc
Confidence 899887654
No 435
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.91 E-value=40 Score=27.72 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCcEEEEccc----CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---------CCCCC
Q 025475 50 SSRVLMVGCG----NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDES 115 (252)
Q Consensus 50 ~~~vLD~G~G----~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~ 115 (252)
+.++|-.|++ .|. .+..+++.|. +|+.+..++...+.+++.....+....+.+|+.+... ...+.
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 88 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK 88 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 4578888874 343 4555666676 7877766543333333322222334567888876431 11256
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 89 iD~lv~nAG~ 98 (272)
T PRK08159 89 LDFVVHAIGF 98 (272)
T ss_pred CcEEEECCcc
Confidence 8999987643
No 436
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=76.90 E-value=6 Score=29.51 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=30.1
Q ss_pred EEcccCc--HhHHHHH--HcC-CCcEEEEeCCHHHHHHHHHh--h--cCC-CCCeEEEccc
Q 025475 55 MVGCGNA--LMSEDMV--KDG-YEDIVNIDISSVAIDMMKMK--Y--EEI-PQLKYLQMDV 105 (252)
Q Consensus 55 D~G~G~G--~~~~~l~--~~~-~~~v~~vD~s~~~i~~a~~~--~--~~~-~~v~~~~~d~ 105 (252)
|+|+..| .....+. ..+ ..+++++|.+|..++..+.+ + ... ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6555554 233 45899999999999988888 3 211 2356555443
No 437
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.89 E-value=2.4 Score=39.03 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=59.3
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----C---CCCCCCe
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----S---FFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~---~~~~~~~ 116 (252)
++.+...|||+||.+|.+..-.++. + ..-|+|||+.|- .-.+++...+.|++.- + .+...+.
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------ccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 3678889999999999998877766 3 447999999762 1123444445554431 1 0233456
Q ss_pred eEEEeccchh----hhcCC-CCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 117 DAVIDKGTLD----SLMCG-TNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 117 D~v~~~~~l~----~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
|+|+..++-. +. .. .....-.-..++-+...|..||.++-
T Consensus 112 dvVLhDgapnVg~~w~-~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWV-QDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred cEEeecCCCccchhHH-HHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 8888665311 11 00 00001113345556678889999543
No 438
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.65 E-value=16 Score=32.50 Aligned_cols=69 Identities=25% Similarity=0.352 Sum_probs=45.7
Q ss_pred CCCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
...+|+-+|+|. |. .+..|.+.|. +++.+|.+++.++.++... ..+.++.+|..+... ..-..+|.|++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL---PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 345788888863 33 3333333344 8999999999888877654 246788888876431 23346888875
No 439
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=76.47 E-value=32 Score=32.90 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=65.8
Q ss_pred cEEEEcccC-cH-hHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhcC-------C------------CCCeEEEccccCCC
Q 025475 52 RVLMVGCGN-AL-MSEDMV-KDGYEDIVNIDISSVAIDMMKMKYEE-------I------------PQLKYLQMDVRDMS 109 (252)
Q Consensus 52 ~vLD~G~G~-G~-~~~~l~-~~~~~~v~~vD~s~~~i~~a~~~~~~-------~------------~~v~~~~~d~~~~~ 109 (252)
+|.-+|+|+ |. ++..++ ..|. +|+.+|.+++.++.+..++.. . .++++. .| +.
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~---~~ 380 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TD---YR 380 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CC---hH
Confidence 689999996 43 444455 3566 899999999988887665421 0 112211 11 11
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.-...|+|+-. +.+.+ +-.++++.++-++++++-+|.-.+-+-+...+...
T Consensus 381 --~~~~adlViEa-v~E~l-------~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~ 431 (699)
T TIGR02440 381 --GFKDVDIVIEA-VFEDL-------ALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAA 431 (699)
T ss_pred --HhccCCEEEEe-ccccH-------HHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHh
Confidence 11358888854 33444 78899999999999998777655555555444443
No 440
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=76.27 E-value=26 Score=30.21 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=56.7
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC----CCCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~----~~~~~~~~~D~v~ 120 (252)
+.++.+||-.|+|. |..+..+++. |...++++|.++.-.+.+++.-. ..++..+-.+ +.......+|+|+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~----~~~i~~~~~~~~~~v~~~~~~~~d~vl 259 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA----THVINPKEEDLVAAIREITGGGVDYAL 259 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----cEEecCCCcCHHHHHHHHhCCCCcEEE
Confidence 45677888888753 5666666655 55469999999887777665311 1122111111 1001134589888
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..-. -...+..+.+.|+++|.++...
T Consensus 260 d~~g-------------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 260 DTTG-------------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred ECCC-------------CcHHHHHHHHHhccCCEEEEeC
Confidence 4211 0124677788899999988754
No 441
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.25 E-value=14 Score=30.18 Aligned_cols=74 Identities=8% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCC--------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF--------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~--------~~~~~ 116 (252)
+.++|-.|++.|. .+..+++.|. +|+.++.++..++.....+.. ..++.++.+|+.+.... ..+..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 5578888886553 6666677776 899999998776665554432 23678889998875311 12468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+++.+..
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 98887654
No 442
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.25 E-value=15 Score=32.47 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
-.+.+|+-+|+|. |......++....+|+++|.++.-...+... ...+ .++.+. . ...|+|+....
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-----G~~v--~~leea--l--~~aDVVItaTG-- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-----GFRV--MTMEEA--A--KIGDIFITATG-- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-----CCEe--CCHHHH--H--hcCCEEEECCC--
Confidence 4677999999995 6665555554334899999988543332221 1121 122221 1 24699876321
Q ss_pred hhcCCCCChhhHHHHHH-HHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLG-EVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~i~~~~~ 162 (252)
...+++ +....+++|++++......
T Consensus 260 -----------~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 260 -----------NKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred -----------CHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 133343 4778899999988766543
No 443
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=76.22 E-value=11 Score=30.96 Aligned_cols=106 Identities=12% Similarity=0.193 Sum_probs=59.4
Q ss_pred EEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccchhhhcC
Q 025475 54 LMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTLDSLMC 130 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l~~~~~ 130 (252)
+..=+|+=.++..+++. ..+.+.+|+.+.-.+..+.++....+++++..|..+... .+..+--+|++...++.-
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~-- 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK-- 138 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST--
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc--
Confidence 33444544455555554 458999999999999999988776789999999876210 134456788888887765
Q ss_pred CCCChhhHHHHHHHHHHccc--CCcEEEEEEcCChhhhh
Q 025475 131 GTNAPISASQMLGEVSRLLK--PGGIYMLITYGDPKARM 167 (252)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~--~gG~l~i~~~~~~~~~~ 167 (252)
.+...+...+...++ +.|.++|..+.......
T Consensus 139 -----~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~ 172 (245)
T PF04378_consen 139 -----DDYQRVVDALAKALKRWPTGVYAIWYPIKDRERV 172 (245)
T ss_dssp -----THHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHH
T ss_pred -----hHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHH
Confidence 666666666666664 68888887654443333
No 444
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.12 E-value=20 Score=30.34 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=57.7
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC----CCC-CCCCCeeEE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MSF-FEDESFDAV 119 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~----~~~-~~~~~~D~v 119 (252)
.+.++.+||..|+|. |..+..+++.-..+++++..+++..+.++..-. .+++...-.+ +.. .....+|++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~----~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA----DDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC----CEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 356777899998763 666666666633478888888887777754321 1111111111 000 133458999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.... -...+..+.+.|+++|.++...
T Consensus 232 ld~~g-------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATG-------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCC-------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 85311 1234677888999999987654
No 445
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.97 E-value=23 Score=32.89 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=44.5
Q ss_pred CCCcEEEEccc--CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----------CCCCeEEEccccCCCCC--CC
Q 025475 49 TSSRVLMVGCG--NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------IPQLKYLQMDVRDMSFF--ED 113 (252)
Q Consensus 49 ~~~~vLD~G~G--~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~----------~~~v~~~~~d~~~~~~~--~~ 113 (252)
.+.+||-.|+. .|. +...|++.|+ +|++++.+...+......+.. ..++.++.+|+.+...+ .-
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 45578877763 232 3334445565 899999987765544332211 12578899999875321 12
Q ss_pred CCeeEEEeccc
Q 025475 114 ESFDAVIDKGT 124 (252)
Q Consensus 114 ~~~D~v~~~~~ 124 (252)
+..|+||++..
T Consensus 158 ggiDiVVn~AG 168 (576)
T PLN03209 158 GNASVVICCIG 168 (576)
T ss_pred cCCCEEEEccc
Confidence 45898887643
No 446
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.93 E-value=15 Score=29.77 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=47.8
Q ss_pred CcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCeeE
Q 025475 51 SRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFDA 118 (252)
Q Consensus 51 ~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D~ 118 (252)
++||-.|++.| .++..+++.|. +++.++.+++.++.....+....++.++.+|+.+.... ..+..|+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 46777887543 24555556666 89999998877665555443222678889999874311 1245799
Q ss_pred EEeccch
Q 025475 119 VIDKGTL 125 (252)
Q Consensus 119 v~~~~~l 125 (252)
++.+...
T Consensus 82 lv~~ag~ 88 (257)
T PRK07024 82 VIANAGI 88 (257)
T ss_pred EEECCCc
Confidence 9987543
No 447
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.80 E-value=14 Score=30.02 Aligned_cols=74 Identities=11% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
++++|-.|++.|. ++..++++|. +|+.++.+++.++.....+.. ..++.++.+|+.+.... .-+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4578888876542 5555666676 899999988777666555532 23577888998775311 124
Q ss_pred CeeEEEeccc
Q 025475 115 SFDAVIDKGT 124 (252)
Q Consensus 115 ~~D~v~~~~~ 124 (252)
..|+++.+..
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899887654
No 448
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.45 E-value=25 Score=31.29 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=68.5
Q ss_pred CCCcEEEEcc-cC------cHhHHHHHHcC-CCcEEEEeCC-HHHHHHHHHhhcCCCCCeEEEccccCCC---------C
Q 025475 49 TSSRVLMVGC-GN------ALMSEDMVKDG-YEDIVNIDIS-SVAIDMMKMKYEEIPQLKYLQMDVRDMS---------F 110 (252)
Q Consensus 49 ~~~~vLD~G~-G~------G~~~~~l~~~~-~~~v~~vD~s-~~~i~~a~~~~~~~~~v~~~~~d~~~~~---------~ 110 (252)
++..||-+|- |+ |-++.++.+++ -.-++++|+- |.++++.+...... ++.+...+....| .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~-~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV-GVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc-CCceecCCCCCCHHHHHHHHHHH
Confidence 3457888863 33 45666677765 2357778875 77888888876542 3444443222222 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+....+|+|+..-.=-|- -++.+-.=+.++.++++|+=+|++++-.
T Consensus 178 ak~~~~DvvIvDTAGRl~-----ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH-----IDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHHcCCCEEEEeCCCccc-----ccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 234668999987653222 2356666788899999999999998854
No 449
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=75.30 E-value=13 Score=31.43 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHh----HHHHHHcC-CCcEEEEeCCHH
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALM----SEDMVKDG-YEDIVNIDISSV 83 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~----~~~l~~~~-~~~v~~vD~s~~ 83 (252)
.+.+.........++-.|+|||.. +..|.++. ..++++||....
T Consensus 159 ~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S 207 (300)
T COG0031 159 GPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207 (300)
T ss_pred HHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCC
Confidence 344444444446788899999864 44444443 468999998643
No 450
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=75.13 E-value=19 Score=27.25 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=53.5
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+|-=+|.|. ..++..|++.|+ ++++.|.+++..+.....- -....+..+.. ...|+|++.-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g------~~~~~s~~e~~----~~~dvvi~~v------ 65 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG------AEVADSPAEAA----EQADVVILCV------ 65 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT------EEEESSHHHHH----HHBSEEEE-S------
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh------hhhhhhhhhHh----hcccceEeec------
Confidence 455567763 235555666676 8999999998777666542 11222333321 2458888642
Q ss_pred CCCCChhhHHHHHHH--HHHcccCCcEEEEEEcCChhh
Q 025475 130 CGTNAPISASQMLGE--VSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~--~~~~L~~gG~l~i~~~~~~~~ 165 (252)
++.+...+++.. +...|++|..++-.+...|..
T Consensus 66 ---~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~ 100 (163)
T PF03446_consen 66 ---PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPET 100 (163)
T ss_dssp ---SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH
T ss_pred ---ccchhhhhhhhhhHHhhccccceEEEecCCcchhh
Confidence 244666777777 778888777777666556643
No 451
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.90 E-value=16 Score=30.65 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCH---HHHHHHHHhhc-CCCCCeEEEccccCCCCCC--CCCeeEE
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISS---VAIDMMKMKYE-EIPQLKYLQMDVRDMSFFE--DESFDAV 119 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~---~~i~~a~~~~~-~~~~v~~~~~d~~~~~~~~--~~~~D~v 119 (252)
.+.+++-+|+| |. .+..++..|..+++.++.++ +..+...+.+. ..+.+.+...|+.+..... -..+|+|
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 35689999997 43 23334456776799999985 22222222222 2223445555654432111 1346999
Q ss_pred Eeccchh
Q 025475 120 IDKGTLD 126 (252)
Q Consensus 120 ~~~~~l~ 126 (252)
+.+-++.
T Consensus 204 INaTp~G 210 (289)
T PRK12548 204 VNATLVG 210 (289)
T ss_pred EEeCCCC
Confidence 8765544
No 452
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.81 E-value=16 Score=29.17 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.++|-.|+.. |. ++..++++|. +|++++.++...+.....+....++.++.+|+.+.... ..+.+|
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 83 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD 83 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45788888754 33 5555666676 79999999876655544443223577888998775321 113589
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+|+.+..
T Consensus 84 ~vi~~ag 90 (251)
T PRK07231 84 ILVNNAG 90 (251)
T ss_pred EEEECCC
Confidence 9988654
No 453
>PLN02253 xanthoxin dehydrogenase
Probab=74.67 E-value=17 Score=29.84 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=47.3
Q ss_pred CCcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|-.|++.| . ++..+++.|. +|++++.++...+.....+....++.++.+|+.+.... ..+..|
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id 96 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD 96 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 457888886543 2 4445556666 89999998776655544443323678889999875321 114689
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+++.+..
T Consensus 97 ~li~~Ag 103 (280)
T PLN02253 97 IMVNNAG 103 (280)
T ss_pred EEEECCC
Confidence 9887654
No 454
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.59 E-value=45 Score=27.09 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCcEEEEccc-CcH----hHHHHHHcCCCcEEEEeCCH--HHHHHHHHhhcCCCCCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCG-NAL----MSEDMVKDGYEDIVNIDISS--VAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G-~G~----~~~~l~~~~~~~v~~vD~s~--~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~ 113 (252)
+.+++-.|+| ++. .+..+++.|. +|+.++.+. +.++.....+. .++.++.+|+.+.... ..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4578899983 233 4444555566 788888653 44444333332 2467888898775311 12
Q ss_pred CCeeEEEeccchhhh-----cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~-----~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..|+++.+..+... .+...+.++.. .+.+.+...|+++|.++...
T Consensus 84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 578999887653211 01111222221 23355566777788766544
No 455
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.58 E-value=6.1 Score=34.52 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+.+|+-+|+| .|..+...+.. |. +|+.+|.++...+.+...+.. .+.....+..++.+. -..+|+|+..-.+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~- 241 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIEDA-VKRADLLIGAVLIP- 241 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHHH-HccCCEEEEccccC-
Confidence 4479999998 36655555554 55 799999998776665544321 111111111111101 13589999642110
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+. ..+.-+-++..+.+++++.++-...
T Consensus 242 ---g~---~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 242 ---GA---KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred ---CC---CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 00 1111122455566899988776543
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.45 E-value=16 Score=30.74 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=51.3
Q ss_pred CCCcEEEEcccC-cHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|+-+|+|. |......+. .|. +|+.+|.++...+.++.. ..+.+. ..++. ..-..+|+|+..-..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~-----G~~~~~--~~~l~-~~l~~aDiVI~t~p~- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEM-----GLSPFH--LSELA-EEVGKIDIIFNTIPA- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----CCeeec--HHHHH-HHhCCCCEEEECCCh-
Confidence 467999999984 443333333 355 999999998766655432 122221 11221 111368999964211
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.-+-++..+.+++|+.++-...
T Consensus 221 ------------~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 221 ------------LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ------------hhhhHHHHHcCCCCcEEEEEcc
Confidence 1123455677889887764443
No 457
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=74.40 E-value=41 Score=27.93 Aligned_cols=79 Identities=10% Similarity=0.390 Sum_probs=58.7
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC-------CC--C
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF-------ED--E 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~-------~~--~ 114 (252)
.+.++|--|+..|. ++..++++|. +++.+-.+.+-++...+.+.+. -.+.++.+|+.+.... .. .
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 34588889987764 7777888877 8999999999888887777542 2578999999886521 11 4
Q ss_pred CeeEEEeccchhhh
Q 025475 115 SFDAVIDKGTLDSL 128 (252)
Q Consensus 115 ~~D~v~~~~~l~~~ 128 (252)
..|+.|-+..+-+.
T Consensus 84 ~IdvLVNNAG~g~~ 97 (265)
T COG0300 84 PIDVLVNNAGFGTF 97 (265)
T ss_pred cccEEEECCCcCCc
Confidence 78999988766554
No 458
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=73.97 E-value=32 Score=29.42 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=61.8
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-CC-CCCCeeEEEe
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FF-EDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-~~-~~~~~D~v~~ 121 (252)
++++.+||-.|+ |.|.++.++++. |. .++++--+++-.+.+++.-.+. -+.+...|+.+-. +. ....+|+|+.
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~-vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADH-VINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCE-EEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 567889999985 467888888887 45 6777777776666666553320 1222223222211 12 2346999996
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.-. ...+.+....|+++|.++......
T Consensus 218 ~vG--------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG--------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC--------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 432 344566778899999988866543
No 459
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.93 E-value=15 Score=29.59 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=50.0
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|++.| ..+..+++.|. +|++++.+++.++.....+... .++..+.+|+.+.... .-++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI 87 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 568899998655 25555666676 8999999987766665554322 3567788888764311 12478
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 88 d~lv~~ag~ 96 (253)
T PRK05867 88 DIAVCNAGI 96 (253)
T ss_pred CEEEECCCC
Confidence 999877543
No 460
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=73.90 E-value=18 Score=28.43 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=49.5
Q ss_pred EEEEcccCcHhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC--CCCCeeEEEeccchh
Q 025475 53 VLMVGCGNALMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKGTLD 126 (252)
Q Consensus 53 vLD~G~G~G~~~~~l----~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~~l~ 126 (252)
|--+|+ +|..+..+ ..+|. +||++=-++.-+... +.+.+++.|++++... .-..+|+|++.....
T Consensus 3 IaiIgA-sG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 3 IAIIGA-SGKAGSRILKEALKRGH-EVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred EEEEec-CchhHHHHHHHHHhCCC-eeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 334444 45444444 34465 999999887643322 3578899999987631 124599999864311
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKP 151 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~ 151 (252)
...+.+.-.+..+.+...|+.
T Consensus 74 ----~~~~~~~~~k~~~~li~~l~~ 94 (211)
T COG2910 74 ----ASDNDELHSKSIEALIEALKG 94 (211)
T ss_pred ----CCChhHHHHHHHHHHHHHHhh
Confidence 112334344445556666655
No 461
>PRK08507 prephenate dehydrogenase; Validated
Probab=73.85 E-value=22 Score=29.42 Aligned_cols=84 Identities=8% Similarity=0.138 Sum_probs=50.0
Q ss_pred cEEEEcccC--cHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+|.-+|+|. |.++..+.+.|. .+++++|.++...+.++.. +.+.. ..+..+ .. ..|+|+..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~~~~-~~~~~~---~~--~aD~Vilav----- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GLVDE-IVSFEE---LK--KCDVIFLAI----- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CCCcc-cCCHHH---Hh--cCCEEEEeC-----
Confidence 466778874 456667766663 3799999999877766532 11111 111111 12 278988643
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
++......+.++.. ++++..++
T Consensus 67 -----p~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 -----PVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred -----cHHHHHHHHHHHhc-cCCCCEEE
Confidence 33455667777777 77766443
No 462
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=73.71 E-value=6.3 Score=33.15 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=41.8
Q ss_pred ccCcHhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhc---CCCCCeE----EEccccCCCC----CCCCCeeEEEec
Q 025475 58 CGNALMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYE---EIPQLKY----LQMDVRDMSF----FEDESFDAVIDK 122 (252)
Q Consensus 58 ~G~G~~~~~l~~~----~~~~v~~vD~s~~~i~~a~~~~~---~~~~v~~----~~~d~~~~~~----~~~~~~D~v~~~ 122 (252)
.|+|+.+..+.++ +..+++.+|.++..+...+..+. ..+++++ +.+|+++... +.....|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 4567777776665 45689999999999888888873 1234544 4778876431 455679999999
Q ss_pred cchhhh
Q 025475 123 GTLDSL 128 (252)
Q Consensus 123 ~~l~~~ 128 (252)
..+-|+
T Consensus 85 AA~KhV 90 (293)
T PF02719_consen 85 AALKHV 90 (293)
T ss_dssp -----H
T ss_pred hhcCCC
Confidence 999998
No 463
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=73.42 E-value=3.2 Score=32.91 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 136 ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 136 ~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.....+.+++|+|+|||.+++..-.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecc
Confidence 34578899999999999998886543
No 464
>PLN02494 adenosylhomocysteinase
Probab=73.39 E-value=15 Score=33.22 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|+-+|+|. |......+.. |. +|+++|.++.-...+... ...+. ++.+. . ...|+|+....-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~-----G~~vv--~leEa--l--~~ADVVI~tTGt- 319 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME-----GYQVL--TLEDV--V--SEADIFVTTTGN- 319 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc-----CCeec--cHHHH--H--hhCCEEEECCCC-
Confidence 477999999994 6555544443 45 899999988543333221 11211 22221 1 247999863221
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
..-+..+..+.|++||+++.+....+.
T Consensus 320 -----------~~vI~~e~L~~MK~GAiLiNvGr~~~e 346 (477)
T PLN02494 320 -----------KDIIMVDHMRKMKNNAIVCNIGHFDNE 346 (477)
T ss_pred -----------ccchHHHHHhcCCCCCEEEEcCCCCCc
Confidence 122346677889999999887654333
No 465
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=73.28 E-value=16 Score=31.06 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=59.5
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc----cccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~----d~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+ |.|..+..+++. |. ++++++.+++-.+.+++.+.. -.++.. +..+ ........+|
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~~~gvd 223 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGF---DDAFNYKEEPDLDAALKRYFPNGID 223 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC---ceeEEcCCcccHHHHHHHhCCCCcE
Confidence 3567889999886 457777777776 55 799999888877777663311 111210 1111 0001124689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+.. . . ...+..+.+.|+++|.++...
T Consensus 224 ~v~d~-----~-------g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 224 IYFDN-----V-------G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEEC-----C-------C--HHHHHHHHHHhccCcEEEEec
Confidence 88852 1 1 135677889999999988654
No 466
>PRK06484 short chain dehydrogenase; Validated
Probab=73.26 E-value=37 Score=30.85 Aligned_cols=108 Identities=12% Similarity=0.197 Sum_probs=63.0
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.+.++|-.|++.| .++..+++.|. +|+.++.++..++...+... ..+..+.+|+.+.... .-+..
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3557888888665 35556666776 89999998877666555432 2456678888775311 12568
Q ss_pred eEEEeccchhh-h-cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDS-L-MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~-~-~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+++.+..... . .....+.++.. .+++.+...++.+|.++.+.
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 99987654321 1 00111222222 23455556666778776654
No 467
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=73.25 E-value=22 Score=30.64 Aligned_cols=95 Identities=23% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE-ccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|+-.|+| .|..+..+++. |. ++++++.+++....+.+.+.. ...+. .+....... ...+|+|+..-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga---~~~i~~~~~~~~~~~-~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGA---DDYLVSSDAAEMQEA-ADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCC---cEEecCCChHHHHHh-cCCCcEEEECCC
Confidence 456788888775 46666666666 44 688888887655554433311 11111 110111101 124788874211
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-...++.+.+.|+++|.++....
T Consensus 254 -------------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 -------------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -------------chHHHHHHHHHhccCCEEEEECC
Confidence 12356667788999999887653
No 468
>PRK07890 short chain dehydrogenase; Provisional
Probab=73.22 E-value=17 Score=29.28 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.+||-.|++.|. ++..++++|. +|++++.++...+........ ..++.++.+|+.+.... .-+..
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV 83 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence 4578888875542 5555666776 899999998766555544432 23578889998764311 11468
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+|+.+...
T Consensus 84 d~vi~~ag~ 92 (258)
T PRK07890 84 DALVNNAFR 92 (258)
T ss_pred cEEEECCcc
Confidence 998887643
No 469
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.06 E-value=31 Score=25.38 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=54.5
Q ss_pred EEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCCC-CCeEEEcc-ccCCCCCCCCCeeEEEeccch
Q 025475 53 VLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEIP-QLKYLQMD-VRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 53 vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~~~-~v~~~~~d-~~~~~~~~~~~~D~v~~~~~l 125 (252)
|+-+|+|. |. ++..|.+.|. +|+.+.-.+ -++..++.- .... +..+.... ..... .....+|+|+..-=
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~viv~vK- 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPS-ADAGPYDLVIVAVK- 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHG-HHHSTESEEEE-SS-
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcch-hccCCCcEEEEEec-
Confidence 46678874 54 4444445455 899999988 555544431 1101 00111100 11111 23467999996422
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
..+....++.+...+.++..+++...+..
T Consensus 77 ---------a~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 77 ---------AYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp ---------GGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred ---------ccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 23556788889999999987777665433
No 470
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=72.84 E-value=52 Score=27.10 Aligned_cols=109 Identities=10% Similarity=0.130 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC--C-CCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--F-FEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~--~-~~~~~~D~v~~~~ 123 (252)
++++.+ |..=||+=.++..+.... .++.++++.|.-....+.++....++++.++|..... . .+.+.--+|++..
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 344444 677788878888777763 4899999999999999999987778999999976521 0 1334567888888
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHccc--CCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLK--PGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~--~gG~l~i~~~~~~~ 164 (252)
.++-- .+...+++.+.+.++ ++|.+.|..+....
T Consensus 165 PfE~~-------~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r 200 (279)
T COG2961 165 PFELK-------DEYQRVVEALAEAYKRFATGTYAIWYPIKDR 200 (279)
T ss_pred Ccccc-------cHHHHHHHHHHHHHHhhcCceEEEEEeecch
Confidence 87755 455555555554443 57777776654333
No 471
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=72.76 E-value=71 Score=29.27 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=55.3
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMS 109 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~ 109 (252)
.+|--+|+|+ | .++..++..|+ +|+..|.+++.++.+..++.. .+ +++. ..|..+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~~~-- 81 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDLHA-- 81 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCHHH--
Confidence 3688889985 3 46666677776 899999999998877554321 11 1221 112211
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
. ...|+|+..- .+ +.+-.+.++.++..+++++-++
T Consensus 82 -l--~~aDlVIEav-~E-------~~~vK~~vf~~l~~~~~~~~Il 116 (503)
T TIGR02279 82 -L--ADAGLVIEAI-VE-------NLEVKKALFAQLEELCPADTII 116 (503)
T ss_pred -h--CCCCEEEEcC-cC-------cHHHHHHHHHHHHhhCCCCeEE
Confidence 2 2578888542 22 2366677888888877766543
No 472
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.45 E-value=37 Score=28.38 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=54.6
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+.++.+||-.|+| .|..+..+++. |. ++++++.+++..+.+++ +. +.. ..+..+. .....+|+++...
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~g----~~~-~~~~~~~--~~~~~~d~vid~~- 222 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-LG----VET-VLPDEAE--SEGGGFDVVVEAT- 222 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-cC----CcE-EeCcccc--ccCCCCCEEEECC-
Confidence 4567788888764 24444444444 55 69999999988888876 21 111 1111111 2334689998531
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-...++.+.+.|+++|.++...
T Consensus 223 ------------g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 ------------GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ------------CChHHHHHHHHHhhcCCEEEEEc
Confidence 01234666777889999988643
No 473
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.44 E-value=20 Score=28.98 Aligned_cols=75 Identities=12% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.+.++|-.|++.|. ++..++++|. ++++++.+++.++.....++. ..++.++.+|+.+.... .-++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 45688888875432 4455566676 899999998766555544432 23578888898764311 1246
Q ss_pred eeEEEeccc
Q 025475 116 FDAVIDKGT 124 (252)
Q Consensus 116 ~D~v~~~~~ 124 (252)
.|.++.+..
T Consensus 89 id~vi~~ag 97 (256)
T PRK06124 89 LDILVNNVG 97 (256)
T ss_pred CCEEEECCC
Confidence 788887654
No 474
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.42 E-value=18 Score=29.09 Aligned_cols=73 Identities=11% Similarity=0.239 Sum_probs=45.3
Q ss_pred CcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC---CCCCCeeEEEecc
Q 025475 51 SRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---FEDESFDAVIDKG 123 (252)
Q Consensus 51 ~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~ 123 (252)
.+||-.|++.|. ++..+++.|. ++++++.++...+........ ...+.++.+|+.+... ......|+|+.+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 368888875432 3444555565 889998887655554443322 2357888899877531 1234689988764
Q ss_pred c
Q 025475 124 T 124 (252)
Q Consensus 124 ~ 124 (252)
.
T Consensus 82 g 82 (257)
T PRK09291 82 G 82 (257)
T ss_pred C
Confidence 4
No 475
>PRK05650 short chain dehydrogenase; Provisional
Probab=72.36 E-value=12 Score=30.68 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=45.4
Q ss_pred cEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCeeE
Q 025475 52 RVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESFDA 118 (252)
Q Consensus 52 ~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~D~ 118 (252)
+||-.|+..|. ++..+++.|. +|+.++.+....+.....+.. ..++.++.+|+.+.... ..+.+|+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 57777764432 4555566666 899999987765554444322 23677888898764311 1246899
Q ss_pred EEeccch
Q 025475 119 VIDKGTL 125 (252)
Q Consensus 119 v~~~~~l 125 (252)
++.+...
T Consensus 81 lI~~ag~ 87 (270)
T PRK05650 81 IVNNAGV 87 (270)
T ss_pred EEECCCC
Confidence 8887543
No 476
>PRK05693 short chain dehydrogenase; Provisional
Probab=72.33 E-value=38 Score=27.68 Aligned_cols=68 Identities=19% Similarity=0.425 Sum_probs=41.8
Q ss_pred cEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCeeEE
Q 025475 52 RVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFDAV 119 (252)
Q Consensus 52 ~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D~v 119 (252)
++|-.|++.| . ++..+++.|. +|++++.++..++.... ..+.++.+|+.+.... ..+..|+|
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 76 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELEAEHGGLDVL 76 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5777776443 2 4444555565 89999998876554432 1356778888764311 12468999
Q ss_pred Eeccch
Q 025475 120 IDKGTL 125 (252)
Q Consensus 120 ~~~~~l 125 (252)
+.+...
T Consensus 77 i~~ag~ 82 (274)
T PRK05693 77 INNAGY 82 (274)
T ss_pred EECCCC
Confidence 887653
No 477
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.26 E-value=62 Score=28.51 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=53.9
Q ss_pred cEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----------CCCeEEEccccCCCCCCCCCeeEE
Q 025475 52 RVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----------PQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 52 ~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-----------~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
+|--+|.| -|.-...+...|+ +|+++|++++.++.+++..... ...++. .+ .+.. ......|+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~-~t-~~~~-~~~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFN-AT-LDKN-EAYRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE-Ee-cchh-hhhcCCCEE
Confidence 45567777 3533333333465 8999999999988887643210 011111 00 0010 111346777
Q ss_pred Eeccchh-hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 120 IDKGTLD-SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 120 ~~~~~l~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+..-.-. .......+.....++++.+.+ +++|..+++.+...|.
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 7642211 000011133556677788877 6776666555544443
No 478
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=72.20 E-value=28 Score=28.80 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=57.9
Q ss_pred hhHHHHHh---hCCCCCcEEEEcccCcH---hHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC
Q 025475 38 ALRPFVRK---YIPTSSRVLMVGCGNAL---MSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM 108 (252)
Q Consensus 38 ~l~~~~~~---~~~~~~~vLD~G~G~G~---~~~~l~~~-~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~ 108 (252)
.+-+.+.. .+|.++|||.+|+|+-. -+...+++ . .+-++-.|+.+- ..+ .-..+.+|...+
T Consensus 47 QLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------vSD--a~~~~~~Dc~t~ 116 (299)
T PF06460_consen 47 QLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------VSD--ADQSIVGDCRTY 116 (299)
T ss_dssp HHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B-S--SSEEEES-GGGE
T ss_pred HHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------ccc--cCCceecccccc
Confidence 35555644 25778899999998521 22223332 1 124444454321 111 224567777766
Q ss_pred CCCCCCCeeEEEeccc---hhhhcCCCCChhhH-HHHHHHHHHcccCCcEEEEEE--cCChhhhhhhccccccceeE
Q 025475 109 SFFEDESFDAVIDKGT---LDSLMCGTNAPISA-SQMLGEVSRLLKPGGIYMLIT--YGDPKARMIHLKWKVYNWKI 179 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~---l~~~~~~~~~~~~~-~~~l~~~~~~L~~gG~l~i~~--~~~~~~~~~~~~~~~~~~~~ 179 (252)
. .+..+|+|++..- ..+..-.....+.. .-+..-+..-|+-||.+.+-. +.. ......+.+.+..|..
T Consensus 117 ~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~~Lyel~~~F~~wt~ 190 (299)
T PF06460_consen 117 M--PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-NAQLYELMGYFSWWTC 190 (299)
T ss_dssp E--ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---HHHHHHHTTEEEEEE
T ss_pred C--CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-cHHHHHHHhhcccEEE
Confidence 4 5678999998632 00000000111222 334455678899999988854 333 4455556555666653
No 479
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=72.17 E-value=42 Score=29.67 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=55.8
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------------CCCCeEEEccccCCCCCCCC
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------------IPQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---------------~~~v~~~~~d~~~~~~~~~~ 114 (252)
+|--+|+|. | .++..+++.|+ +|+++|.++..++..+..... .+++++ ..+..+ .-.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~----~~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYED----AIR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHH----HHh
Confidence 466678884 3 45566666676 899999999887765432100 011111 011111 113
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
..|+|+..-.-..-.-+.++.......++.+...+++|-.++..+...|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~p 124 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPP 124 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCC
Confidence 4788775432110000112224567777788888887766665443333
No 480
>PRK07326 short chain dehydrogenase; Provisional
Probab=72.07 E-value=22 Score=28.21 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=44.8
Q ss_pred CCcEEEEcccCcHh----HHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNALM----SEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~~----~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.+||-.|+ +|.+ +..++++|. +|++++.++.........+.....+.++.+|+.+...+ ..+..
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457888885 3333 344445566 79999998876655544443224577888888764311 11368
Q ss_pred eEEEecc
Q 025475 117 DAVIDKG 123 (252)
Q Consensus 117 D~v~~~~ 123 (252)
|+|+.+.
T Consensus 84 d~vi~~a 90 (237)
T PRK07326 84 DVLIANA 90 (237)
T ss_pred CEEEECC
Confidence 8888664
No 481
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=72.03 E-value=45 Score=26.32 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=52.2
Q ss_pred CCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCC---HHHHHH---------------HHHhhcC-CCCCeEE--Ecccc
Q 025475 50 SSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDIS---SVAIDM---------------MKMKYEE-IPQLKYL--QMDVR 106 (252)
Q Consensus 50 ~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s---~~~i~~---------------a~~~~~~-~~~v~~~--~~d~~ 106 (252)
..+|+-+|||. |. .+..++..|..+++.+|.+ +..+.+ +++.+.. .+.+++. ..++.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~ 100 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT 100 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC
Confidence 45899999984 54 6666777788789999998 433332 1112211 2233332 22222
Q ss_pred CCC-CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccC
Q 025475 107 DMS-FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP 151 (252)
Q Consensus 107 ~~~-~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~ 151 (252)
.-. ...-..+|+|+.. .+ +++.+..+++.+.+.++.
T Consensus 101 ~~~~~~~~~~~DlVi~a--~D-------n~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 101 EENIDKFFKDADIVCEA--FD-------NAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred HhHHHHHhcCCCEEEEC--CC-------CHHHHHHHHHHHHHHcCC
Confidence 110 0001358999964 23 336667777888887764
No 482
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.91 E-value=52 Score=26.78 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCcEEEEcc-cCcH----hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGC-GNAL----MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~-G~G~----~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|+ +++. .+..+++.|. +++.++......+..++.....+....+.+|+.+.... .-+.
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG 84 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence 457888896 2333 4555566675 77777543222222222211112334677888775311 1257
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 85 iD~lvnnAG~ 94 (260)
T PRK06997 85 LDGLVHSIGF 94 (260)
T ss_pred CcEEEEcccc
Confidence 8999987643
No 483
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=71.84 E-value=36 Score=28.78 Aligned_cols=96 Identities=20% Similarity=0.343 Sum_probs=55.9
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccCCCC-CCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSF-FEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~~~~-~~~~~~D~v~ 120 (252)
+.++.+||..|+|. |..+..+++. |...+++++.++...+.++..- ...++... ...+.. .....+|+++
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~~~d~vl 232 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG----ADDTINPKEEDVEKVRELTEGRGADLVI 232 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC----CCEEecCccccHHHHHHHhCCCCCCEEE
Confidence 45677888888754 6666666655 4434999998888777664321 11222111 011100 1233589998
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
... .....+..+.+.|+++|.++...
T Consensus 233 d~~-------------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 233 EAA-------------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ECC-------------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 531 11235677788999999987765
No 484
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.70 E-value=10 Score=31.89 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
+..+.+|.-+|+|.-+....+..... +|.+||+++..+...+-+++
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHH
No 485
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.63 E-value=22 Score=28.76 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=46.8
Q ss_pred CCCcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
++.++|-.|++.| . ++..++++|. +|++++.++...+......... ++.++.+|+.+.... ..+.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4568998888643 2 3444555566 7999999887665554443222 467888888764311 01468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+|+....
T Consensus 88 d~vi~~ag 95 (264)
T PRK12829 88 DVLVNNAG 95 (264)
T ss_pred CEEEECCC
Confidence 99987654
No 486
>PRK06196 oxidoreductase; Provisional
Probab=71.63 E-value=13 Score=31.30 Aligned_cols=73 Identities=10% Similarity=0.185 Sum_probs=47.0
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.+.+||-.|++.|. ++..+++.|. +|++++.++...+.....+ ..+.++.+|+.+.... ..+..
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 34578888875442 4445555666 8999999877655444333 2478888998875311 12568
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 101 D~li~nAg~ 109 (315)
T PRK06196 101 DILINNAGV 109 (315)
T ss_pred CEEEECCCC
Confidence 999887653
No 487
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.14 E-value=43 Score=28.70 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=53.7
Q ss_pred CCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-------CCC-CCCCCeeE
Q 025475 49 TSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-------MSF-FEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-------~~~-~~~~~~D~ 118 (252)
++.+||-.|+| .|..+..+++. |..++++++.++.-.+.+++. +-..++..+-.. ... .....+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF----GADATIDIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCCeEEcCcccccHHHHHHHHHHhCCCCCcE
Confidence 56688888865 35555555555 444899999888776666532 111111111000 000 12345899
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+.... -...+....+.|+++|.++...
T Consensus 253 vid~~g-------------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 253 VIEASG-------------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEECCC-------------ChHHHHHHHHHhccCCEEEEEc
Confidence 884211 1234667778899999988664
No 488
>PRK07985 oxidoreductase; Provisional
Probab=71.12 E-value=44 Score=27.86 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCH--HHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISS--VAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~--~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
+.++|-.|++.|. .+..+++.|. +|+.++.+. ...+........ ..++.++.+|+.+.... .-+
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 127 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG 127 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4588999975442 5666666776 788776542 233333333222 22567788888774310 124
Q ss_pred CeeEEEeccchhhh--cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL--MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~--~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+...... .....+.++. ..+++.+.+.++.+|.++.+.
T Consensus 128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 67888876542110 0001122222 234455666667788776643
No 489
>PRK07035 short chain dehydrogenase; Provisional
Probab=70.95 E-value=20 Score=28.81 Aligned_cols=74 Identities=8% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|++.|. ++..+++.|. +|++++.++...+.....+.. ..++.++.+|+.+.... .-++.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 86 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL 86 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578888887653 5556666676 899999988766655554432 23567788888765311 11468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+++.+..
T Consensus 87 d~li~~ag 94 (252)
T PRK07035 87 DILVNNAA 94 (252)
T ss_pred CEEEECCC
Confidence 99887654
No 490
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=70.85 E-value=2 Score=31.21 Aligned_cols=56 Identities=29% Similarity=0.350 Sum_probs=33.7
Q ss_pred CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhh-HHHHHHHHHHcccCCcEEEE
Q 025475 97 QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 97 ~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~i 157 (252)
.+++..+|+.+.-......+|+|+....-- ..+++. -..+++.+++++++||.+..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-----~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSP-----AKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-T-----TTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCC-----cCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 356777777653212236899999874211 123332 27789999999999998754
No 491
>PRK07454 short chain dehydrogenase; Provisional
Probab=70.67 E-value=25 Score=28.01 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
..++|-.|+..| . ++..++++|. +|++++.++...+........ ..++.++.+|+.+.... ..+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457888886432 2 4445555666 899999998765554444332 23678889999875311 11457
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 85 d~lv~~ag~ 93 (241)
T PRK07454 85 DVLINNAGM 93 (241)
T ss_pred CEEEECCCc
Confidence 999876543
No 492
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.65 E-value=22 Score=28.64 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=47.8
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|++.|. ++..+++.|. ++++++.++..++.....+.. ..++.++.+|+.+.... ..++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i 85 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL 85 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4578888875432 4455566665 899999998766555444432 23678888998764311 12467
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+|+.+..
T Consensus 86 d~li~~ag 93 (253)
T PRK06172 86 DYAFNNAG 93 (253)
T ss_pred CEEEECCC
Confidence 99987654
No 493
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.60 E-value=20 Score=35.74 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=59.5
Q ss_pred CCcEEEEcccC-cHhH-HHHHHcCCCc-------------EEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC-
Q 025475 50 SSRVLMVGCGN-ALMS-EDMVKDGYED-------------IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED- 113 (252)
Q Consensus 50 ~~~vLD~G~G~-G~~~-~~l~~~~~~~-------------v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~- 113 (252)
..+|+-+|||. |... ..+++....+ ++.+|.+++..+.+.+.+ ++++.+..|+.+...+..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---ENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---CCCceEEeecCCHHHHHHh
Confidence 45899999983 5544 4444433223 888999987655444433 356677777766432221
Q ss_pred -CCeeEEEeccch-hhhc----C---CC--CChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 114 -ESFDAVIDKGTL-DSLM----C---GT--NAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 114 -~~~D~v~~~~~l-~~~~----~---~~--~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
...|+|++.... .|.. | +. -.......-+.++....+..|..++.+++
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 348998876542 2220 0 00 00001122334555666677777776665
No 494
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.53 E-value=60 Score=27.26 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=66.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCC---------CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSF---------FED 113 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~---------~~~ 113 (252)
.++.|+--||..|. ++..++..|. +++.+-....-++...+.+.. .. ++..+++|+.+... ..-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 35689999998774 7777777776 556566665555555333321 12 58999999988642 134
Q ss_pred CCeeEEEeccchhhhcC-CCCChhhHHH-----------HHHHHHHcccC--CcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMC-GTNAPISASQ-----------MLGEVSRLLKP--GGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~-~~~~~~~~~~-----------~l~~~~~~L~~--gG~l~i~~ 159 (252)
+..|+.+.|..+....+ ...+.++.++ +.+.+...|++ +|.++++.
T Consensus 90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvis 149 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVIS 149 (282)
T ss_pred CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEe
Confidence 67899999887665322 2233344432 22444555543 37777654
No 495
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.51 E-value=20 Score=28.86 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=46.9
Q ss_pred CcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCee
Q 025475 51 SRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 51 ~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+++|-.|++.| . ++..+++.|. ++++++.++...+.....+.. ..++.++.+|+.+.... .-+..|
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 46788888654 2 5555566676 899999988766655554432 23677888898764311 114679
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+++.+..
T Consensus 81 ~lI~~ag 87 (252)
T PRK07677 81 ALINNAA 87 (252)
T ss_pred EEEECCC
Confidence 9887643
No 496
>PRK05854 short chain dehydrogenase; Provisional
Probab=70.43 E-value=22 Score=29.98 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=48.4
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCC---------CCCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSF---------FEDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~---------~~~~ 114 (252)
+.+++-.|++.|. .+..+++.|. +|+.+..++.-.+.+...+.. ..++.++.+|+.+... ...+
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 4578888876553 5555666675 899999987655544443321 1257888999987531 1135
Q ss_pred CeeEEEeccch
Q 025475 115 SFDAVIDKGTL 125 (252)
Q Consensus 115 ~~D~v~~~~~l 125 (252)
..|+++.+...
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999987653
No 497
>PRK06128 oxidoreductase; Provisional
Probab=70.27 E-value=49 Score=27.60 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHH--HHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSV--AIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~--~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
++++|-.|++.|. ++..+++.|. +|+.+..+.. ..+...+.+.. ...+.++.+|+.+.... .-+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 4578888875442 5555566666 7777665432 22222222221 23567788898774310 124
Q ss_pred CeeEEEeccchhhhc--CCCCChhhH-----------HHHHHHHHHcccCCcEEEEE
Q 025475 115 SFDAVIDKGTLDSLM--CGTNAPISA-----------SQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~--~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~ 158 (252)
..|+++.+....... ....+.++. ..+++.+.+.|+++|.++.+
T Consensus 134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 689999876532110 001112222 23455566677778877664
No 498
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=70.18 E-value=17 Score=31.70 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHH-HHHHHHhhcCCCCCeEEEc-cccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVA-IDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~-i~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|+-.|+| .|..+..+++. |. ++++++.+++. .+.+++. +--.++.. +........ +.+|+|+..-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~l----Ga~~~i~~~~~~~v~~~~-~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRL----GADSFLVTTDSQKMKEAV-GTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhC----CCcEEEcCcCHHHHHHhh-CCCcEEEECC
Confidence 367788888886 36666666665 55 78999887553 3444332 11111110 101111011 2488888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.....+..+.+.++++|.++....
T Consensus 251 -------------G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 -------------SAEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -------------CcHHHHHHHHHhhcCCCEEEEEcc
Confidence 112356777788999999887653
No 499
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=70.02 E-value=45 Score=29.02 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=55.7
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc------c----ccCCCCCCC
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM------D----VRDMSFFED 113 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~------d----~~~~~~~~~ 113 (252)
.+.++.+||-.|+|. |..+..+++. |..++++++.++.-.+.+++.-. . .++.. + +.+. ...
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~--~--~~v~~~~~~~~~~~~~v~~~--~~g 273 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA--D--YVFNPTKMRDCLSGEKVMEV--TKG 273 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--C--EEEcccccccccHHHHHHHh--cCC
Confidence 456677888887753 4455555554 54479999988876666555321 1 11111 1 1111 123
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..+|+|+.. . ......+..+.+.|+++|.++...
T Consensus 274 ~gvDvvld~-----~-------g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 274 WGADIQVEA-----A-------GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCEEEEC-----C-------CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 458988853 1 122345677788899999988754
No 500
>PRK07904 short chain dehydrogenase; Provisional
Probab=69.94 E-value=19 Score=29.24 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=46.9
Q ss_pred CCCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHH-HHHHHHhhcC--CCCCeEEEccccCCCC--------CCC
Q 025475 48 PTSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVA-IDMMKMKYEE--IPQLKYLQMDVRDMSF--------FED 113 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~-i~~a~~~~~~--~~~v~~~~~d~~~~~~--------~~~ 113 (252)
..+.+||-.|++.|. ++..++++|..+|++++.++.. ++.+.+.+.. ..+++++.+|+.+... ...
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 345689999986543 4444555553489999887653 4444333322 1268889999876431 112
Q ss_pred CCeeEEEeccc
Q 025475 114 ESFDAVIDKGT 124 (252)
Q Consensus 114 ~~~D~v~~~~~ 124 (252)
+..|+++.+..
T Consensus 86 g~id~li~~ag 96 (253)
T PRK07904 86 GDVDVAIVAFG 96 (253)
T ss_pred CCCCEEEEeee
Confidence 57898886543
Done!