Query 025476
Match_columns 252
No_of_seqs 139 out of 1275
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 5.5E-89 1.2E-93 628.3 22.9 240 1-242 1-256 (361)
2 PTZ00023 glyceraldehyde-3-phos 100.0 1.6E-81 3.4E-86 578.3 23.7 239 1-242 1-242 (337)
3 PLN02237 glyceraldehyde-3-phos 100.0 2.6E-81 5.7E-86 589.4 22.5 237 2-242 74-316 (442)
4 PRK15425 gapA glyceraldehyde-3 100.0 8.7E-81 1.9E-85 572.1 24.2 236 3-242 2-238 (331)
5 COG0057 GapA Glyceraldehyde-3- 100.0 1.8E-80 3.9E-85 563.1 22.5 236 4-243 2-240 (335)
6 PRK07403 glyceraldehyde-3-phos 100.0 2.9E-80 6.2E-85 569.5 22.8 236 4-243 2-242 (337)
7 PLN02272 glyceraldehyde-3-phos 100.0 2.8E-79 6.1E-84 574.6 24.2 237 4-242 86-323 (421)
8 PRK07729 glyceraldehyde-3-phos 100.0 1.1E-78 2.3E-83 559.8 23.0 237 2-242 1-239 (343)
9 PTZ00353 glycosomal glyceralde 100.0 2E-78 4.3E-83 557.8 22.5 239 2-242 1-242 (342)
10 PLN02358 glyceraldehyde-3-phos 100.0 7.5E-78 1.6E-82 555.1 24.6 239 3-242 5-244 (338)
11 PLN03096 glyceraldehyde-3-phos 100.0 1E-77 2.3E-82 561.2 22.9 237 2-242 59-299 (395)
12 TIGR01534 GAPDH-I glyceraldehy 100.0 1.2E-76 2.5E-81 545.0 23.2 235 5-242 1-239 (327)
13 PRK08955 glyceraldehyde-3-phos 100.0 5.5E-76 1.2E-80 541.9 21.8 235 3-242 2-239 (334)
14 PRK08289 glyceraldehyde-3-phos 100.0 9E-76 2E-80 553.5 21.5 235 4-242 128-376 (477)
15 PRK13535 erythrose 4-phosphate 100.0 2.6E-75 5.6E-80 537.5 22.4 235 4-242 2-241 (336)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 6.1E-72 1.3E-76 514.1 23.3 234 5-242 1-239 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 2.8E-69 6E-74 476.3 8.2 221 14-240 1-221 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 9.5E-51 2.1E-55 373.8 17.5 208 6-243 1-217 (333)
19 PF00044 Gp_dh_N: Glyceraldehy 100.0 2.6E-51 5.6E-56 339.9 11.2 149 4-154 1-151 (151)
20 smart00846 Gp_dh_N Glyceraldeh 100.0 1.4E-46 3E-51 311.2 15.8 148 4-154 1-149 (149)
21 PRK04207 glyceraldehyde-3-phos 100.0 1.1E-41 2.3E-46 315.9 17.8 208 4-243 2-220 (341)
22 PRK06901 aspartate-semialdehyd 100.0 1.8E-35 3.9E-40 269.9 17.0 206 1-241 1-227 (322)
23 PRK14874 aspartate-semialdehyd 100.0 1.2E-32 2.6E-37 254.6 16.7 205 4-243 2-244 (334)
24 TIGR01296 asd_B aspartate-semi 100.0 6.2E-32 1.4E-36 250.4 15.9 206 5-243 1-247 (339)
25 COG0136 Asd Aspartate-semialde 100.0 1.5E-31 3.3E-36 244.8 16.6 208 4-241 2-242 (334)
26 TIGR01745 asd_gamma aspartate- 100.0 1.4E-31 3E-36 249.1 14.0 208 4-241 1-271 (366)
27 PRK06728 aspartate-semialdehyd 100.0 4.4E-29 9.5E-34 231.4 16.6 207 3-241 5-250 (347)
28 PRK06598 aspartate-semialdehyd 100.0 5.7E-28 1.2E-32 225.4 15.6 209 4-241 2-273 (369)
29 PF02800 Gp_dh_C: Glyceraldehy 99.9 4.2E-27 9.1E-32 196.4 7.7 84 159-243 1-84 (157)
30 PRK08040 putative semialdehyde 99.9 7.8E-25 1.7E-29 202.7 19.4 209 2-243 3-243 (336)
31 PRK08664 aspartate-semialdehyd 99.9 1.5E-24 3.2E-29 201.8 16.0 212 1-244 1-243 (349)
32 PRK05671 aspartate-semialdehyd 99.9 3.1E-24 6.7E-29 198.8 16.0 208 3-243 4-244 (336)
33 PLN02383 aspartate semialdehyd 99.9 4E-23 8.6E-28 192.0 17.3 208 3-243 7-252 (344)
34 TIGR00978 asd_EA aspartate-sem 99.9 9.6E-23 2.1E-27 189.1 16.8 210 4-243 1-239 (341)
35 PRK00436 argC N-acetyl-gamma-g 99.8 1.7E-19 3.7E-24 167.6 17.1 210 1-243 1-239 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.8 1.8E-17 3.8E-22 154.3 16.5 211 4-243 1-242 (346)
37 KOG4777 Aspartate-semialdehyde 99.7 4.2E-18 9.1E-23 150.6 7.6 167 1-187 1-186 (361)
38 PLN02968 Probable N-acetyl-gam 99.7 2.7E-16 5.8E-21 148.2 16.0 211 3-243 38-277 (381)
39 PRK08300 acetaldehyde dehydrog 99.6 7.7E-16 1.7E-20 140.6 9.2 156 1-184 1-160 (302)
40 PRK11863 N-acetyl-gamma-glutam 99.6 2.3E-14 5E-19 131.7 11.9 175 2-225 1-191 (313)
41 TIGR03215 ac_ald_DH_ac acetald 99.4 5.4E-13 1.2E-17 121.3 10.9 152 4-185 2-155 (285)
42 TIGR01851 argC_other N-acetyl- 99.4 7.4E-13 1.6E-17 121.4 11.0 137 4-185 2-146 (310)
43 PF01118 Semialdhyde_dh: Semia 98.9 9E-10 2E-14 87.5 2.9 113 5-143 1-119 (121)
44 COG0002 ArgC Acetylglutamate s 98.6 6.3E-07 1.4E-11 83.2 13.6 196 1-229 1-228 (349)
45 smart00859 Semialdhyde_dh Semi 98.2 2.8E-06 6.1E-11 67.1 6.6 111 5-142 1-120 (122)
46 PRK13303 L-aspartate dehydroge 98.0 1.9E-05 4.2E-10 71.0 7.3 92 4-126 2-93 (265)
47 PRK13301 putative L-aspartate 97.9 1.9E-05 4.2E-10 71.2 6.3 147 2-185 1-151 (267)
48 TIGR01921 DAP-DH diaminopimela 97.9 2.8E-05 6E-10 72.2 6.4 90 1-124 1-90 (324)
49 PRK13302 putative L-aspartate 97.8 5E-05 1.1E-09 68.7 6.6 88 1-118 4-92 (271)
50 PF02774 Semialdhyde_dhC: Semi 97.7 8.2E-05 1.8E-09 63.4 6.3 80 163-243 1-107 (184)
51 TIGR00036 dapB dihydrodipicoli 97.7 8.2E-05 1.8E-09 67.1 6.1 95 4-123 2-97 (266)
52 PRK11579 putative oxidoreducta 97.5 0.0003 6.6E-09 65.2 8.1 94 1-126 1-96 (346)
53 PRK06270 homoserine dehydrogen 97.5 0.00025 5.5E-09 66.1 7.1 35 2-36 1-44 (341)
54 COG1712 Predicted dinucleotide 97.5 0.0003 6.5E-09 62.2 6.4 148 4-185 1-149 (255)
55 PRK13304 L-aspartate dehydroge 97.4 0.00026 5.6E-09 63.7 6.1 88 4-123 2-90 (265)
56 PRK06349 homoserine dehydrogen 97.3 0.00037 8.1E-09 66.9 6.0 95 1-126 1-105 (426)
57 PF01408 GFO_IDH_MocA: Oxidore 97.3 0.00045 9.7E-09 53.7 5.4 93 4-126 1-94 (120)
58 COG0289 DapB Dihydrodipicolina 97.3 0.0013 2.8E-08 59.3 8.8 99 4-126 3-102 (266)
59 PRK00048 dihydrodipicolinate r 97.3 0.00055 1.2E-08 61.3 6.2 87 4-123 2-89 (257)
60 PF01113 DapB_N: Dihydrodipico 97.0 0.0012 2.5E-08 52.8 4.5 93 4-120 1-94 (124)
61 PRK06813 homoserine dehydrogen 96.9 0.0014 3.1E-08 61.4 5.5 34 3-36 2-44 (346)
62 PRK06392 homoserine dehydrogen 96.9 0.0019 4.1E-08 60.1 5.9 33 4-36 1-40 (326)
63 PRK08374 homoserine dehydrogen 96.8 0.0011 2.5E-08 61.7 4.2 107 2-126 1-122 (336)
64 COG0673 MviM Predicted dehydro 96.7 0.005 1.1E-07 56.2 7.2 97 1-126 1-99 (342)
65 COG0460 ThrA Homoserine dehydr 96.6 0.0078 1.7E-07 56.1 7.5 36 1-36 1-45 (333)
66 PRK10206 putative oxidoreducta 96.5 0.0051 1.1E-07 57.3 5.8 93 4-126 2-96 (344)
67 PLN02775 Probable dihydrodipic 96.4 0.0098 2.1E-07 54.4 7.3 97 3-124 11-111 (286)
68 PRK05447 1-deoxy-D-xylulose 5- 96.2 0.0043 9.4E-08 58.9 3.7 110 4-123 2-120 (385)
69 PF03447 NAD_binding_3: Homose 96.2 0.0013 2.8E-08 51.4 -0.1 86 10-126 1-90 (117)
70 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.061 1.3E-06 47.5 10.3 35 1-36 29-63 (227)
71 PLN02700 homoserine dehydrogen 96.0 0.0088 1.9E-07 56.8 4.8 36 1-36 1-44 (377)
72 COG4569 MhpF Acetaldehyde dehy 96.0 0.028 6.1E-07 49.3 7.2 71 93-168 71-144 (310)
73 COG4091 Predicted homoserine d 95.9 0.011 2.4E-07 55.4 4.7 93 3-104 17-112 (438)
74 cd05211 NAD_bind_Glu_Leu_Phe_V 95.8 0.075 1.6E-06 46.6 9.5 35 2-37 22-56 (217)
75 COG1748 LYS9 Saccharopine dehy 95.7 0.046 1E-06 52.1 8.4 98 4-126 2-99 (389)
76 PRK09414 glutamate dehydrogena 95.7 0.046 1E-06 53.0 8.4 100 3-123 232-341 (445)
77 PRK05472 redox-sensing transcr 95.4 0.035 7.5E-07 48.2 5.8 95 3-126 84-179 (213)
78 COG0569 TrkA K+ transport syst 95.3 0.029 6.2E-07 49.4 5.1 99 4-128 1-103 (225)
79 COG2344 AT-rich DNA-binding pr 95.3 0.03 6.5E-07 48.4 4.8 94 4-126 85-179 (211)
80 PLN02477 glutamate dehydrogena 95.1 0.18 3.9E-06 48.5 10.2 34 3-37 206-239 (410)
81 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.059 1.3E-06 48.3 6.1 102 3-111 11-124 (244)
82 TIGR02130 dapB_plant dihydrodi 94.7 0.066 1.4E-06 48.8 5.6 89 4-120 1-96 (275)
83 PF02826 2-Hacid_dh_C: D-isome 94.3 0.067 1.4E-06 45.1 4.5 32 4-36 37-68 (178)
84 PRK07819 3-hydroxybutyryl-CoA 94.2 0.28 6.1E-06 44.6 8.8 149 4-172 6-180 (286)
85 cd01075 NAD_bind_Leu_Phe_Val_D 94.0 0.21 4.5E-06 43.1 7.0 32 3-36 28-59 (200)
86 PF02629 CoA_binding: CoA bind 93.9 0.056 1.2E-06 41.0 3.1 92 3-126 3-95 (96)
87 PF03446 NAD_binding_2: NAD bi 93.9 0.092 2E-06 43.5 4.5 30 4-34 2-31 (163)
88 PLN02819 lysine-ketoglutarate 93.7 0.1 2.2E-06 55.6 5.4 97 4-126 570-679 (1042)
89 cd05313 NAD_bind_2_Glu_DH NAD( 93.5 0.35 7.5E-06 43.6 7.7 104 3-123 38-151 (254)
90 PRK09466 metL bifunctional asp 93.4 0.08 1.7E-06 55.0 4.0 36 1-36 456-500 (810)
91 cd01483 E1_enzyme_family Super 92.9 0.1 2.3E-06 42.0 3.3 44 5-49 1-45 (143)
92 PRK09436 thrA bifunctional asp 92.8 0.11 2.3E-06 54.2 4.0 35 2-36 464-506 (819)
93 PTZ00117 malate dehydrogenase; 92.8 0.57 1.2E-05 43.3 8.3 33 3-36 5-37 (319)
94 PTZ00079 NADP-specific glutama 92.7 0.49 1.1E-05 46.1 8.0 101 4-120 238-348 (454)
95 PTZ00082 L-lactate dehydrogena 91.9 0.3 6.6E-06 45.2 5.4 32 4-36 7-38 (321)
96 TIGR01761 thiaz-red thiazoliny 91.9 0.13 2.8E-06 48.3 2.9 93 3-126 3-98 (343)
97 PF03435 Saccharop_dh: Sacchar 91.9 0.11 2.5E-06 48.6 2.7 97 6-125 1-97 (386)
98 PRK07634 pyrroline-5-carboxyla 91.9 0.27 5.9E-06 42.9 4.8 35 1-35 1-39 (245)
99 PRK08410 2-hydroxyacid dehydro 91.8 0.21 4.6E-06 46.0 4.3 30 4-34 146-175 (311)
100 PLN02696 1-deoxy-D-xylulose-5- 91.7 0.79 1.7E-05 44.6 8.1 111 4-124 58-179 (454)
101 COG2910 Putative NADH-flavin r 91.7 0.94 2E-05 39.3 7.6 31 4-35 1-32 (211)
102 PRK06487 glycerate dehydrogena 91.6 0.26 5.6E-06 45.6 4.5 30 4-34 149-178 (317)
103 CHL00194 ycf39 Ycf39; Provisio 91.3 0.64 1.4E-05 42.2 6.8 31 4-35 1-32 (317)
104 PRK06223 malate dehydrogenase; 91.3 0.74 1.6E-05 41.8 7.2 32 4-36 3-34 (307)
105 PRK11559 garR tartronate semia 91.2 0.29 6.3E-06 44.1 4.5 33 1-36 1-33 (296)
106 PRK00066 ldh L-lactate dehydro 91.1 1.1 2.4E-05 41.4 8.2 32 4-35 7-38 (315)
107 COG0111 SerA Phosphoglycerate 91.0 0.3 6.5E-06 45.5 4.3 30 4-34 143-172 (324)
108 PRK06932 glycerate dehydrogena 90.9 0.3 6.6E-06 45.1 4.3 29 4-33 148-176 (314)
109 PF13380 CoA_binding_2: CoA bi 90.9 0.81 1.8E-05 36.0 6.2 83 5-126 2-88 (116)
110 PRK14031 glutamate dehydrogena 90.8 0.76 1.6E-05 44.7 7.1 104 4-124 229-341 (444)
111 PRK08507 prephenate dehydrogen 90.7 0.6 1.3E-05 41.8 6.0 30 4-33 1-31 (275)
112 PF10727 Rossmann-like: Rossma 90.7 0.22 4.7E-06 40.2 2.8 32 4-36 11-42 (127)
113 COG0039 Mdh Malate/lactate deh 90.6 0.58 1.2E-05 43.5 5.8 23 4-26 1-23 (313)
114 PRK07574 formate dehydrogenase 90.5 0.37 8E-06 45.9 4.6 30 4-34 193-222 (385)
115 PLN02928 oxidoreductase family 90.5 0.35 7.5E-06 45.3 4.3 30 4-34 160-189 (347)
116 PF03807 F420_oxidored: NADP o 90.4 0.48 1E-05 35.1 4.3 40 5-46 1-42 (96)
117 PF00056 Ldh_1_N: lactate/mala 90.4 0.38 8.3E-06 39.1 4.0 80 4-105 1-81 (141)
118 PF05368 NmrA: NmrA-like famil 90.3 0.29 6.4E-06 42.1 3.4 95 6-125 1-102 (233)
119 PRK11880 pyrroline-5-carboxyla 90.1 0.29 6.2E-06 43.4 3.3 25 1-26 1-25 (267)
120 COG1052 LdhA Lactate dehydroge 90.1 0.4 8.6E-06 44.7 4.3 30 4-34 147-176 (324)
121 PLN00016 RNA-binding protein; 90.0 1 2.2E-05 42.0 7.0 32 4-36 53-89 (378)
122 PRK12480 D-lactate dehydrogena 89.9 0.5 1.1E-05 44.0 4.8 30 4-34 147-176 (330)
123 PRK11790 D-3-phosphoglycerate 89.9 0.41 8.9E-06 45.9 4.4 30 4-34 152-181 (409)
124 PRK06436 glycerate dehydrogena 89.9 0.43 9.3E-06 44.0 4.3 31 4-35 123-153 (303)
125 PRK13243 glyoxylate reductase; 89.8 0.43 9.4E-06 44.4 4.3 29 4-33 151-179 (333)
126 COG1063 Tdh Threonine dehydrog 89.7 0.59 1.3E-05 43.6 5.2 100 5-126 171-271 (350)
127 PRK08268 3-hydroxy-acyl-CoA de 89.6 0.43 9.3E-06 47.0 4.3 36 4-43 8-43 (507)
128 PRK08229 2-dehydropantoate 2-r 89.5 0.5 1.1E-05 43.3 4.5 32 1-34 1-32 (341)
129 PLN02256 arogenate dehydrogena 89.5 0.58 1.2E-05 43.1 4.9 33 2-35 35-67 (304)
130 PRK15409 bifunctional glyoxyla 89.4 0.49 1.1E-05 43.9 4.3 31 4-36 146-177 (323)
131 COG2085 Predicted dinucleotide 89.2 1.1 2.5E-05 39.2 6.2 93 4-128 2-95 (211)
132 PRK06249 2-dehydropantoate 2-r 89.1 2.6 5.6E-05 38.5 8.9 32 1-33 3-34 (313)
133 PRK15469 ghrA bifunctional gly 88.9 0.58 1.3E-05 43.2 4.5 30 4-34 137-166 (312)
134 COG0771 MurD UDP-N-acetylmuram 88.8 2 4.4E-05 41.8 8.2 88 4-119 8-95 (448)
135 PRK14030 glutamate dehydrogena 88.7 2.1 4.6E-05 41.6 8.3 105 3-123 228-341 (445)
136 PRK13403 ketol-acid reductoiso 88.5 0.63 1.4E-05 43.5 4.4 32 4-36 17-48 (335)
137 PRK08644 thiamine biosynthesis 88.3 0.44 9.5E-06 41.5 3.1 31 3-34 28-59 (212)
138 KOG4354 N-acetyl-gamma-glutamy 88.3 1.9 4E-05 39.1 7.0 175 3-212 19-206 (340)
139 cd00755 YgdL_like Family of ac 88.2 1.6 3.5E-05 38.6 6.6 162 3-181 11-179 (231)
140 cd05294 LDH-like_MDH_nadp A la 88.2 1.1 2.4E-05 41.2 5.8 31 4-34 1-33 (309)
141 PLN02306 hydroxypyruvate reduc 88.1 0.67 1.5E-05 44.2 4.4 30 4-34 166-196 (386)
142 PRK05476 S-adenosyl-L-homocyst 87.9 1.2 2.6E-05 43.1 6.0 29 4-33 213-241 (425)
143 PRK15438 erythronate-4-phospha 87.8 0.71 1.5E-05 43.9 4.3 30 4-34 117-146 (378)
144 cd08230 glucose_DH Glucose deh 87.7 6.5 0.00014 36.0 10.6 139 5-168 175-315 (355)
145 PLN03139 formate dehydrogenase 87.6 0.68 1.5E-05 44.2 4.1 29 4-33 200-228 (386)
146 cd00757 ThiF_MoeB_HesA_family 87.4 0.44 9.6E-06 41.7 2.6 33 3-36 21-53 (228)
147 KOG1502 Flavonol reductase/cin 87.4 2.2 4.7E-05 39.9 7.2 44 4-48 7-51 (327)
148 TIGR02354 thiF_fam2 thiamine b 87.1 0.34 7.3E-06 41.9 1.6 33 3-36 21-53 (200)
149 cd01338 MDH_choloroplast_like 87.0 2 4.4E-05 39.9 6.8 147 3-174 2-173 (322)
150 PRK07417 arogenate dehydrogena 86.8 0.9 1.9E-05 40.9 4.3 30 4-34 1-30 (279)
151 PTZ00325 malate dehydrogenase; 86.7 6 0.00013 36.8 9.7 141 4-174 9-173 (321)
152 TIGR01202 bchC 2-desacetyl-2-h 86.6 6.8 0.00015 35.3 10.0 31 5-36 147-177 (308)
153 PLN02602 lactate dehydrogenase 86.6 0.97 2.1E-05 42.5 4.5 150 4-180 38-205 (350)
154 cd00401 AdoHcyase S-adenosyl-L 86.5 1.2 2.6E-05 42.9 5.2 31 4-36 203-233 (413)
155 cd01487 E1_ThiF_like E1_ThiF_l 86.1 0.76 1.7E-05 38.7 3.2 31 5-36 1-31 (174)
156 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.0 0.62 1.3E-05 45.9 3.0 36 4-43 6-41 (503)
157 PRK11064 wecC UDP-N-acetyl-D-m 86.0 1.1 2.4E-05 42.9 4.7 33 1-34 1-33 (415)
158 cd05293 LDH_1 A subgroup of L- 85.8 1.1 2.3E-05 41.5 4.3 33 4-36 4-36 (312)
159 PLN00106 malate dehydrogenase 85.7 7.3 0.00016 36.2 9.8 141 4-173 19-182 (323)
160 PLN02712 arogenate dehydrogena 85.6 1.2 2.5E-05 45.5 4.8 32 3-35 369-400 (667)
161 PRK00257 erythronate-4-phospha 85.5 1.2 2.6E-05 42.5 4.5 30 4-34 117-146 (381)
162 PF03721 UDPG_MGDP_dh_N: UDP-g 85.3 1.2 2.7E-05 37.8 4.2 30 4-34 1-30 (185)
163 TIGR03649 ergot_EASG ergot alk 85.3 3.2 7E-05 36.7 7.0 30 5-35 1-31 (285)
164 PRK08605 D-lactate dehydrogena 85.2 1.3 2.8E-05 41.2 4.5 31 3-33 146-176 (332)
165 PRK05442 malate dehydrogenase; 85.2 2.1 4.5E-05 39.9 5.9 153 1-178 1-179 (326)
166 TIGR01327 PGDH D-3-phosphoglyc 84.9 1.2 2.6E-05 44.1 4.4 30 4-34 139-168 (525)
167 PRK09599 6-phosphogluconate de 84.8 1.3 2.9E-05 40.2 4.4 30 4-34 1-30 (301)
168 KOG2741 Dimeric dihydrodiol de 84.7 1.2 2.5E-05 41.9 4.0 34 3-36 6-41 (351)
169 cd01486 Apg7 Apg7 is an E1-lik 84.4 0.55 1.2E-05 43.5 1.7 31 5-36 1-31 (307)
170 PRK00094 gpsA NAD(P)H-dependen 84.3 1.6 3.5E-05 39.5 4.7 30 4-34 2-31 (325)
171 PRK13581 D-3-phosphoglycerate 84.1 1.3 2.9E-05 43.8 4.3 30 4-34 141-170 (526)
172 PLN02688 pyrroline-5-carboxyla 83.9 1.7 3.8E-05 38.4 4.7 33 4-36 1-36 (266)
173 PRK07679 pyrroline-5-carboxyla 83.8 1.7 3.7E-05 39.0 4.6 26 1-26 1-26 (279)
174 PLN02712 arogenate dehydrogena 83.7 1.5 3.3E-05 44.7 4.7 32 3-35 52-83 (667)
175 PRK12490 6-phosphogluconate de 83.7 1.6 3.5E-05 39.7 4.4 29 5-34 2-30 (299)
176 PRK08618 ornithine cyclodeamin 83.7 1.8 4E-05 39.9 4.9 93 4-125 128-220 (325)
177 PTZ00431 pyrroline carboxylate 83.3 2 4.3E-05 38.3 4.8 26 1-26 1-26 (260)
178 cd05291 HicDH_like L-2-hydroxy 83.1 2.1 4.7E-05 39.1 5.0 29 5-33 2-31 (306)
179 TIGR00872 gnd_rel 6-phosphoglu 83.1 1.7 3.7E-05 39.5 4.4 29 4-33 1-29 (298)
180 TIGR02355 moeB molybdopterin s 83.0 0.96 2.1E-05 40.2 2.6 109 3-118 24-140 (240)
181 PRK05690 molybdopterin biosynt 83.0 0.85 1.8E-05 40.6 2.3 43 3-45 32-74 (245)
182 TIGR03366 HpnZ_proposed putati 83.0 4.2 9E-05 36.1 6.7 136 5-168 123-260 (280)
183 PLN02545 3-hydroxybutyryl-CoA 82.8 2.1 4.6E-05 38.6 4.8 33 1-34 1-34 (295)
184 PRK12475 thiamine/molybdopteri 82.6 2.4 5.3E-05 39.6 5.2 33 3-36 24-56 (338)
185 PRK15116 sulfur acceptor prote 82.5 1.7 3.6E-05 39.5 4.0 24 3-26 30-53 (268)
186 PRK05086 malate dehydrogenase; 82.3 14 0.0003 34.1 10.0 77 93-174 69-166 (312)
187 COG0287 TyrA Prephenate dehydr 82.2 2 4.3E-05 39.2 4.4 25 2-26 2-26 (279)
188 PRK07502 cyclohexadienyl dehyd 82.2 2.1 4.5E-05 39.0 4.5 25 2-26 5-29 (307)
189 cd05290 LDH_3 A subgroup of L- 81.8 1.9 4.2E-05 39.7 4.2 32 5-36 1-32 (307)
190 cd01337 MDH_glyoxysomal_mitoch 81.6 5.8 0.00013 36.7 7.3 33 4-36 1-34 (310)
191 PRK07530 3-hydroxybutyryl-CoA 81.0 2.7 5.8E-05 37.9 4.8 32 1-33 1-33 (292)
192 PRK11154 fadJ multifunctional 80.9 1.3 2.9E-05 45.3 3.1 152 4-175 310-486 (708)
193 PRK06476 pyrroline-5-carboxyla 80.8 2.4 5.3E-05 37.5 4.4 33 4-36 1-34 (258)
194 TIGR02853 spore_dpaA dipicolin 80.7 2.3 5.1E-05 38.7 4.3 31 4-35 152-182 (287)
195 COG3804 Uncharacterized conser 80.6 2.4 5.2E-05 39.1 4.3 35 2-36 1-35 (350)
196 PRK15059 tartronate semialdehy 80.1 2.5 5.4E-05 38.5 4.3 28 5-33 2-29 (292)
197 TIGR02356 adenyl_thiF thiazole 80.1 1.1 2.3E-05 38.6 1.8 40 3-43 21-61 (202)
198 PRK15461 NADH-dependent gamma- 79.9 2.7 5.8E-05 38.2 4.4 30 4-34 2-31 (296)
199 PRK09880 L-idonate 5-dehydroge 79.5 6.4 0.00014 35.9 6.8 89 5-119 172-261 (343)
200 TIGR01505 tartro_sem_red 2-hyd 79.3 2.3 5E-05 38.3 3.8 29 5-34 1-29 (291)
201 TIGR03026 NDP-sugDHase nucleot 79.0 2.7 5.8E-05 40.0 4.3 30 4-34 1-30 (411)
202 PRK03806 murD UDP-N-acetylmura 78.8 8.6 0.00019 36.6 7.7 90 1-124 1-94 (438)
203 cd01484 E1-2_like Ubiquitin ac 78.8 1.2 2.6E-05 39.5 1.8 30 5-35 1-30 (234)
204 PRK14106 murD UDP-N-acetylmura 78.7 6.5 0.00014 37.4 6.9 94 3-125 5-98 (450)
205 PRK07877 hypothetical protein; 78.6 1 2.2E-05 46.4 1.4 116 3-126 107-228 (722)
206 PF00208 ELFV_dehydrog: Glutam 78.6 3.4 7.3E-05 36.9 4.6 138 3-163 32-179 (244)
207 PRK03369 murD UDP-N-acetylmura 78.5 9 0.00019 37.4 7.9 83 4-118 13-95 (488)
208 PRK05479 ketol-acid reductoiso 78.4 3.2 6.9E-05 38.9 4.5 31 4-35 18-48 (330)
209 KOG0455 Homoserine dehydrogena 78.1 2.7 5.8E-05 38.3 3.7 36 1-36 1-44 (364)
210 PRK14619 NAD(P)H-dependent gly 78.0 3.2 7E-05 37.8 4.4 31 3-34 4-34 (308)
211 PRK05600 thiamine biosynthesis 78.0 0.98 2.1E-05 42.8 1.0 110 3-119 41-158 (370)
212 COG1179 Dinucleotide-utilizing 77.9 4.4 9.5E-05 36.6 5.0 123 4-134 31-164 (263)
213 PLN02662 cinnamyl-alcohol dehy 77.8 6.6 0.00014 35.1 6.3 30 4-34 5-35 (322)
214 PRK05597 molybdopterin biosynt 77.6 1.6 3.4E-05 41.0 2.2 111 3-119 28-145 (355)
215 TIGR00465 ilvC ketol-acid redu 77.1 3.9 8.4E-05 37.9 4.6 33 3-36 3-35 (314)
216 COG0334 GdhA Glutamate dehydro 77.0 18 0.00039 34.9 9.1 33 4-37 208-240 (411)
217 PF02737 3HCDH_N: 3-hydroxyacy 77.0 4 8.7E-05 34.5 4.4 30 5-36 1-30 (180)
218 PRK06928 pyrroline-5-carboxyla 76.8 4.1 9E-05 36.6 4.7 32 4-35 2-36 (277)
219 PRK14618 NAD(P)H-dependent gly 76.7 4 8.7E-05 37.4 4.6 31 4-35 5-35 (328)
220 PRK05808 3-hydroxybutyryl-CoA 76.5 4.1 8.9E-05 36.5 4.6 29 4-33 4-32 (282)
221 PRK12491 pyrroline-5-carboxyla 76.2 4.2 9.1E-05 36.7 4.5 25 2-26 1-25 (272)
222 KOG0069 Glyoxylate/hydroxypyru 76.2 2.1 4.5E-05 40.2 2.6 23 4-26 163-185 (336)
223 PRK06129 3-hydroxyacyl-CoA deh 76.2 4 8.7E-05 37.2 4.5 30 4-34 3-32 (308)
224 COG0451 WcaG Nucleoside-diphos 76.1 15 0.00033 32.3 8.1 30 5-35 2-32 (314)
225 TIGR02440 FadJ fatty oxidation 76.1 2.6 5.6E-05 43.2 3.5 32 4-36 305-336 (699)
226 PRK06719 precorrin-2 dehydroge 76.0 29 0.00063 28.6 9.2 30 4-34 14-43 (157)
227 PRK06130 3-hydroxybutyryl-CoA 75.7 4.8 0.0001 36.5 4.8 30 4-34 5-34 (311)
228 TIGR02437 FadB fatty oxidation 75.5 1.9 4E-05 44.4 2.3 31 4-36 314-344 (714)
229 PRK11730 fadB multifunctional 75.2 2.6 5.7E-05 43.3 3.3 31 4-36 314-344 (715)
230 PF02254 TrkA_N: TrkA-N domain 75.2 5.6 0.00012 30.2 4.5 29 6-35 1-29 (116)
231 TIGR01019 sucCoAalpha succinyl 75.1 10 0.00023 34.7 6.8 28 4-32 7-35 (286)
232 PRK01438 murD UDP-N-acetylmura 75.1 14 0.00031 35.5 8.2 30 4-34 17-46 (480)
233 PRK04690 murD UDP-N-acetylmura 75.0 9 0.0002 37.2 6.8 86 4-118 9-94 (468)
234 cd08239 THR_DH_like L-threonin 75.0 6.2 0.00013 35.7 5.4 29 5-34 166-195 (339)
235 PRK11908 NAD-dependent epimera 74.9 4.9 0.00011 36.7 4.7 32 4-35 2-34 (347)
236 COG0373 HemA Glutamyl-tRNA red 74.7 7.9 0.00017 37.4 6.2 33 4-36 179-211 (414)
237 PRK06035 3-hydroxyacyl-CoA deh 74.6 5.3 0.00012 36.0 4.8 30 4-34 4-33 (291)
238 PTZ00075 Adenosylhomocysteinas 74.5 4.5 9.8E-05 39.7 4.5 29 4-33 255-283 (476)
239 TIGR02441 fa_ox_alpha_mit fatt 74.5 1.7 3.6E-05 44.9 1.7 37 4-44 336-372 (737)
240 TIGR01381 E1_like_apg7 E1-like 74.5 1.9 4E-05 43.9 1.9 32 3-35 338-369 (664)
241 cd00704 MDH Malate dehydrogena 74.2 10 0.00023 35.1 6.7 23 4-26 1-24 (323)
242 PRK08818 prephenate dehydrogen 74.0 5.3 0.00011 37.9 4.8 31 3-33 4-35 (370)
243 TIGR01915 npdG NADPH-dependent 73.9 5.6 0.00012 34.4 4.6 29 4-33 1-30 (219)
244 PF13460 NAD_binding_10: NADH( 73.9 5.6 0.00012 32.5 4.4 30 6-36 1-31 (183)
245 KOG0068 D-3-phosphoglycerate d 73.6 4.3 9.4E-05 38.4 3.9 30 5-35 148-177 (406)
246 PF02670 DXP_reductoisom: 1-de 73.6 6.2 0.00014 32.0 4.4 110 6-124 1-120 (129)
247 KOG0024 Sorbitol dehydrogenase 73.6 3.3 7.2E-05 38.8 3.2 97 4-118 171-267 (354)
248 PRK05678 succinyl-CoA syntheta 73.5 9.2 0.0002 35.1 6.1 31 4-34 9-40 (291)
249 PRK06718 precorrin-2 dehydroge 73.4 32 0.00069 29.6 9.2 30 4-34 11-40 (202)
250 PRK09424 pntA NAD(P) transhydr 73.3 11 0.00024 37.3 7.0 31 4-36 166-196 (509)
251 PTZ00142 6-phosphogluconate de 73.2 4.5 9.7E-05 39.6 4.2 129 4-144 2-151 (470)
252 PLN02586 probable cinnamyl alc 73.1 14 0.00031 34.1 7.4 30 5-35 186-215 (360)
253 PRK06988 putative formyltransf 72.9 5.3 0.00011 36.9 4.4 32 1-34 1-32 (312)
254 TIGR02717 AcCoA-syn-alpha acet 72.6 14 0.0003 35.8 7.3 81 4-123 8-94 (447)
255 PRK06522 2-dehydropantoate 2-r 72.5 5.8 0.00013 35.4 4.5 30 4-34 1-30 (304)
256 TIGR01759 MalateDH-SF1 malate 72.0 8.1 0.00018 35.9 5.4 24 3-26 3-27 (323)
257 PRK07531 bifunctional 3-hydrox 71.7 5.9 0.00013 38.8 4.7 31 4-36 5-35 (495)
258 PRK08306 dipicolinate synthase 71.5 6.2 0.00013 36.1 4.5 30 4-34 153-182 (296)
259 PRK14573 bifunctional D-alanyl 71.4 15 0.00032 38.3 7.7 34 1-36 1-36 (809)
260 PRK09496 trkA potassium transp 71.4 5.7 0.00012 37.7 4.4 30 4-34 1-30 (453)
261 cd08237 ribitol-5-phosphate_DH 70.9 19 0.00042 32.9 7.7 30 5-34 166-196 (341)
262 PRK06046 alanine dehydrogenase 70.8 6.7 0.00015 36.2 4.6 33 4-36 130-162 (326)
263 cd05213 NAD_bind_Glutamyl_tRNA 70.5 6.3 0.00014 36.1 4.3 33 3-36 178-210 (311)
264 PRK11199 tyrA bifunctional cho 70.5 5.9 0.00013 37.4 4.3 29 4-33 99-128 (374)
265 COG0345 ProC Pyrroline-5-carbo 70.2 7.3 0.00016 35.4 4.6 39 4-44 2-42 (266)
266 PRK07680 late competence prote 70.2 7.2 0.00016 34.8 4.6 23 4-26 1-23 (273)
267 COG1062 AdhC Zn-dependent alco 70.1 10 0.00022 35.9 5.5 96 5-123 188-284 (366)
268 PRK06444 prephenate dehydrogen 69.9 6 0.00013 34.2 3.8 23 4-26 1-24 (197)
269 cd08242 MDR_like Medium chain 69.9 21 0.00046 31.7 7.6 83 5-119 158-240 (319)
270 PRK09260 3-hydroxybutyryl-CoA 69.8 6.6 0.00014 35.3 4.3 38 4-45 2-39 (288)
271 cd08298 CAD2 Cinnamyl alcohol 69.7 47 0.001 29.6 9.8 84 5-121 170-253 (329)
272 PRK00683 murD UDP-N-acetylmura 69.7 7 0.00015 37.2 4.6 89 1-125 1-89 (418)
273 PRK06153 hypothetical protein; 69.6 3.5 7.6E-05 39.5 2.5 102 4-109 177-282 (393)
274 PRK07878 molybdopterin biosynt 69.2 2.1 4.6E-05 40.7 0.9 33 3-36 42-74 (392)
275 PLN02494 adenosylhomocysteinas 68.7 7.3 0.00016 38.3 4.5 30 4-34 255-284 (477)
276 PRK08219 short chain dehydroge 68.6 7.9 0.00017 32.4 4.3 33 1-35 1-34 (227)
277 PRK15057 UDP-glucose 6-dehydro 68.6 6.4 0.00014 37.5 4.0 39 4-47 1-39 (388)
278 COG1087 GalE UDP-glucose 4-epi 68.5 15 0.00032 34.3 6.2 35 4-39 1-36 (329)
279 TIGR00936 ahcY adenosylhomocys 68.4 7.5 0.00016 37.4 4.5 29 4-33 196-224 (406)
280 cd01339 LDH-like_MDH L-lactate 68.3 5.2 0.00011 36.3 3.3 30 6-36 1-30 (300)
281 PF00899 ThiF: ThiF family; I 68.2 9.8 0.00021 30.1 4.5 103 3-111 2-110 (135)
282 PRK08328 hypothetical protein; 68.0 3.6 7.8E-05 36.2 2.1 33 3-36 27-59 (231)
283 PLN02514 cinnamyl-alcohol dehy 67.9 34 0.00074 31.4 8.7 133 5-169 183-316 (357)
284 COG1023 Gnd Predicted 6-phosph 67.8 5.7 0.00012 36.0 3.3 42 4-49 1-42 (300)
285 cd05292 LDH_2 A subgroup of L- 67.6 8.2 0.00018 35.4 4.4 33 4-36 1-33 (308)
286 PRK08293 3-hydroxybutyryl-CoA 67.5 9.6 0.00021 34.3 4.8 29 4-33 4-32 (287)
287 PLN02350 phosphogluconate dehy 67.2 5.9 0.00013 39.1 3.6 127 4-144 7-157 (493)
288 TIGR00561 pntA NAD(P) transhyd 66.7 15 0.00033 36.4 6.3 31 4-36 165-195 (511)
289 PRK07411 hypothetical protein; 66.7 3.4 7.3E-05 39.4 1.7 110 3-119 38-155 (390)
290 cd01065 NAD_bind_Shikimate_DH 66.6 12 0.00026 29.8 4.8 33 3-36 19-51 (155)
291 PLN02353 probable UDP-glucose 66.4 9.6 0.00021 37.4 4.8 31 4-34 2-33 (473)
292 TIGR01087 murD UDP-N-acetylmur 66.3 17 0.00037 34.5 6.5 85 5-118 1-87 (433)
293 PRK01710 murD UDP-N-acetylmura 66.2 17 0.00037 35.0 6.5 31 4-36 15-45 (458)
294 cd08281 liver_ADH_like1 Zinc-d 66.2 11 0.00025 34.7 5.2 96 5-124 194-290 (371)
295 PRK12921 2-dehydropantoate 2-r 66.0 8.9 0.00019 34.3 4.3 30 4-34 1-30 (305)
296 PLN02427 UDP-apiose/xylose syn 65.6 9.6 0.00021 35.4 4.6 32 4-35 15-47 (386)
297 TIGR01757 Malate-DH_plant mala 65.1 10 0.00023 36.2 4.7 24 3-26 44-68 (387)
298 TIGR01772 MDH_euk_gproteo mala 64.7 14 0.00031 34.2 5.4 32 5-36 1-33 (312)
299 PRK00141 murD UDP-N-acetylmura 64.7 33 0.00071 33.3 8.2 83 4-118 16-99 (473)
300 PRK08655 prephenate dehydrogen 64.6 9.9 0.00022 36.7 4.5 30 4-34 1-31 (437)
301 TIGR00243 Dxr 1-deoxy-D-xylulo 64.4 10 0.00022 36.3 4.4 41 4-45 2-44 (389)
302 KOG0022 Alcohol dehydrogenase, 64.2 20 0.00043 33.8 6.2 98 5-123 195-293 (375)
303 PRK15182 Vi polysaccharide bio 63.3 9.8 0.00021 36.7 4.2 30 3-34 6-35 (425)
304 cd05191 NAD_bind_amino_acid_DH 63.3 16 0.00034 26.7 4.5 24 3-26 23-46 (86)
305 TIGR00873 gnd 6-phosphoglucona 62.9 8.2 0.00018 37.8 3.6 30 5-35 1-30 (467)
306 PRK05865 hypothetical protein; 62.6 20 0.00044 37.8 6.7 31 4-35 1-32 (854)
307 COG5322 Predicted dehydrogenas 62.4 27 0.00059 32.3 6.6 61 93-156 230-291 (351)
308 PRK06019 phosphoribosylaminoim 62.3 13 0.00028 34.8 4.8 30 4-34 3-32 (372)
309 cd00300 LDH_like L-lactate deh 62.0 22 0.00047 32.4 6.1 31 6-36 1-31 (300)
310 PRK07236 hypothetical protein; 61.8 12 0.00026 34.7 4.5 33 1-34 4-36 (386)
311 PF01073 3Beta_HSD: 3-beta hyd 61.7 26 0.00057 31.5 6.5 29 8-36 2-31 (280)
312 PRK07066 3-hydroxybutyryl-CoA 61.6 13 0.00027 34.7 4.5 31 4-36 8-38 (321)
313 PLN02240 UDP-glucose 4-epimera 61.5 14 0.0003 33.5 4.8 32 3-35 5-37 (352)
314 PF07991 IlvN: Acetohydroxy ac 61.2 13 0.00029 31.4 4.1 31 4-35 5-35 (165)
315 PRK02318 mannitol-1-phosphate 61.1 11 0.00023 35.7 4.0 31 4-34 1-31 (381)
316 COG0743 Dxr 1-deoxy-D-xylulose 60.7 12 0.00027 35.5 4.3 42 4-46 2-45 (385)
317 KOG4039 Serine/threonine kinas 60.6 34 0.00073 29.9 6.5 28 2-29 17-45 (238)
318 PRK06545 prephenate dehydrogen 60.6 11 0.00024 35.2 4.0 22 5-26 2-23 (359)
319 PRK08223 hypothetical protein; 60.6 7.8 0.00017 35.6 2.9 111 3-118 27-145 (287)
320 PRK05708 2-dehydropantoate 2-r 60.6 13 0.00028 33.9 4.3 30 3-33 2-31 (305)
321 TIGR03201 dearomat_had 6-hydro 60.4 27 0.00058 31.9 6.4 29 5-34 169-197 (349)
322 PRK02006 murD UDP-N-acetylmura 60.1 21 0.00047 34.7 6.0 31 4-36 8-38 (498)
323 cd01485 E1-1_like Ubiquitin ac 60.1 7.7 0.00017 33.3 2.6 32 3-35 19-50 (198)
324 TIGR01035 hemA glutamyl-tRNA r 60.1 13 0.00028 35.6 4.5 31 4-34 181-211 (417)
325 PRK03659 glutathione-regulated 60.1 11 0.00025 37.8 4.2 36 4-43 401-436 (601)
326 PRK03803 murD UDP-N-acetylmura 59.9 22 0.00048 33.9 6.0 85 5-118 8-93 (448)
327 PF04321 RmlD_sub_bind: RmlD s 59.7 15 0.00033 33.0 4.6 32 4-36 1-33 (286)
328 PRK03562 glutathione-regulated 59.7 11 0.00024 38.0 4.1 30 4-34 401-430 (621)
329 PF01488 Shikimate_DH: Shikima 59.5 20 0.00042 28.6 4.8 95 4-126 13-109 (135)
330 PRK15181 Vi polysaccharide bio 58.2 16 0.00036 33.4 4.7 32 3-35 15-47 (348)
331 PRK05653 fabG 3-ketoacyl-(acyl 57.9 19 0.00041 30.2 4.7 32 3-35 5-37 (246)
332 PLN00112 malate dehydrogenase 57.5 9.3 0.0002 37.2 3.0 23 3-25 100-123 (444)
333 KOG1399 Flavin-containing mono 57.4 12 0.00025 36.6 3.6 32 1-33 4-35 (448)
334 PRK14851 hypothetical protein; 56.7 5.6 0.00012 40.8 1.4 98 3-105 43-145 (679)
335 KOG3923 D-aspartate oxidase [A 56.7 15 0.00033 34.2 4.0 51 1-51 1-60 (342)
336 PF01262 AlaDh_PNT_C: Alanine 56.2 22 0.00047 29.4 4.7 31 4-35 21-51 (168)
337 cd00650 LDH_MDH_like NAD-depen 56.1 16 0.00034 32.5 4.0 21 6-26 1-22 (263)
338 TIGR00518 alaDH alanine dehydr 55.7 18 0.00038 34.2 4.4 30 4-34 168-197 (370)
339 PRK00421 murC UDP-N-acetylmura 55.6 41 0.0009 32.3 7.1 31 4-36 8-39 (461)
340 TIGR01758 MDH_euk_cyt malate d 55.4 32 0.00069 31.9 6.1 22 5-26 1-23 (324)
341 COG1250 FadB 3-hydroxyacyl-CoA 55.3 17 0.00037 33.7 4.2 34 1-36 1-34 (307)
342 PLN02178 cinnamyl-alcohol dehy 55.2 67 0.0015 30.0 8.3 133 5-169 181-314 (375)
343 TIGR01763 MalateDH_bact malate 55.2 20 0.00043 32.9 4.6 32 4-36 2-33 (305)
344 PRK09126 hypothetical protein; 55.1 17 0.00038 33.5 4.3 33 1-34 1-33 (392)
345 PLN02695 GDP-D-mannose-3',5'-e 54.9 21 0.00045 33.3 4.8 31 3-34 21-52 (370)
346 PRK04663 murD UDP-N-acetylmura 54.7 43 0.00092 32.0 7.0 84 4-118 8-93 (438)
347 PRK10669 putative cation:proto 54.7 16 0.00034 36.3 4.1 31 4-35 418-448 (558)
348 cd08296 CAD_like Cinnamyl alco 54.0 35 0.00076 30.8 6.0 94 5-124 166-259 (333)
349 TIGR02819 fdhA_non_GSH formald 53.8 1.4E+02 0.0031 28.1 10.3 31 5-36 188-218 (393)
350 PLN00198 anthocyanidin reducta 53.7 22 0.00047 32.3 4.6 31 2-33 8-39 (338)
351 PRK10083 putative oxidoreducta 53.6 39 0.00084 30.3 6.2 31 5-36 163-194 (339)
352 PRK02472 murD UDP-N-acetylmura 53.4 49 0.0011 31.4 7.2 31 4-36 6-36 (447)
353 PLN02740 Alcohol dehydrogenase 53.3 23 0.00051 32.9 4.9 29 5-34 201-230 (381)
354 COG2084 MmsB 3-hydroxyisobutyr 53.3 20 0.00042 33.0 4.2 129 4-144 1-146 (286)
355 TIGR01470 cysG_Nterm siroheme 53.0 1E+02 0.0022 26.5 8.5 30 4-34 10-39 (205)
356 PLN00141 Tic62-NAD(P)-related 53.0 24 0.00052 30.6 4.6 30 4-34 18-48 (251)
357 PRK07326 short chain dehydroge 52.9 25 0.00055 29.6 4.7 30 4-34 7-37 (237)
358 PLN02166 dTDP-glucose 4,6-dehy 52.7 21 0.00046 34.3 4.6 32 3-35 120-152 (436)
359 PF00070 Pyr_redox: Pyridine n 52.6 32 0.00069 24.4 4.5 28 5-33 1-28 (80)
360 TIGR03451 mycoS_dep_FDH mycoth 52.5 84 0.0018 28.7 8.4 29 5-34 179-208 (358)
361 cd08278 benzyl_alcohol_DH Benz 52.4 24 0.00053 32.5 4.8 29 5-34 189-218 (365)
362 PRK02705 murD UDP-N-acetylmura 52.2 30 0.00064 33.1 5.5 30 5-36 2-31 (459)
363 cd08301 alcohol_DH_plants Plan 52.1 27 0.00058 32.1 5.0 29 5-34 190-219 (369)
364 PRK14852 hypothetical protein; 51.9 15 0.00032 39.3 3.5 98 3-106 332-435 (989)
365 PRK09496 trkA potassium transp 51.4 24 0.00052 33.5 4.7 30 4-34 232-261 (453)
366 cd01336 MDH_cytoplasmic_cytoso 51.3 25 0.00054 32.6 4.7 24 3-26 2-26 (325)
367 PLN02778 3,5-epimerase/4-reduc 51.1 25 0.00054 31.7 4.5 28 3-31 9-37 (298)
368 PRK10675 UDP-galactose-4-epime 51.0 24 0.00052 31.7 4.5 30 4-34 1-31 (338)
369 TIGR01408 Ube1 ubiquitin-activ 50.7 22 0.00048 38.2 4.6 142 5-155 421-584 (1008)
370 COG0702 Predicted nucleoside-d 50.7 24 0.00052 30.3 4.2 31 4-35 1-32 (275)
371 COG0677 WecC UDP-N-acetyl-D-ma 50.6 19 0.0004 34.9 3.7 29 4-33 10-38 (436)
372 PLN02986 cinnamyl-alcohol dehy 50.6 30 0.00065 31.0 5.0 31 4-35 6-37 (322)
373 PRK04308 murD UDP-N-acetylmura 50.5 88 0.0019 29.8 8.4 87 4-118 6-92 (445)
374 PRK10309 galactitol-1-phosphat 50.4 31 0.00068 31.3 5.1 28 5-33 163-191 (347)
375 PLN02657 3,8-divinyl protochlo 50.3 27 0.00059 32.9 4.8 32 3-35 60-92 (390)
376 PRK14620 NAD(P)H-dependent gly 50.0 26 0.00056 32.0 4.5 27 4-31 1-27 (326)
377 TIGR02371 ala_DH_arch alanine 49.9 26 0.00057 32.4 4.6 33 4-36 129-161 (325)
378 cd05283 CAD1 Cinnamyl alcohol 49.9 96 0.0021 27.9 8.2 86 5-118 172-257 (337)
379 TIGR00507 aroE shikimate 5-deh 49.8 59 0.0013 28.9 6.7 30 4-34 118-147 (270)
380 KOG2380 Prephenate dehydrogena 49.6 21 0.00045 34.1 3.8 23 4-26 53-75 (480)
381 COG1064 AdhP Zn-dependent alco 49.6 75 0.0016 29.9 7.5 92 5-126 169-261 (339)
382 COG0362 Gnd 6-phosphogluconate 49.4 20 0.00043 34.8 3.6 35 1-36 1-35 (473)
383 PLN02206 UDP-glucuronate decar 49.4 25 0.00054 33.9 4.5 31 4-35 120-151 (442)
384 PRK00045 hemA glutamyl-tRNA re 48.8 26 0.00056 33.6 4.5 30 4-34 183-213 (423)
385 cd08245 CAD Cinnamyl alcohol d 48.1 69 0.0015 28.5 6.9 30 5-35 165-194 (330)
386 PRK07023 short chain dehydroge 47.7 32 0.00068 29.3 4.5 30 4-34 2-32 (243)
387 cd08277 liver_alcohol_DH_like 47.6 61 0.0013 29.8 6.7 29 5-34 187-216 (365)
388 cd08254 hydroxyacyl_CoA_DH 6-h 47.0 36 0.00078 30.2 4.9 95 5-123 168-262 (338)
389 PLN02827 Alcohol dehydrogenase 46.8 34 0.00075 31.8 4.9 28 5-33 196-224 (378)
390 PLN02948 phosphoribosylaminoim 46.7 32 0.0007 34.5 4.9 32 2-34 21-52 (577)
391 PRK12825 fabG 3-ketoacyl-(acyl 46.5 37 0.00081 28.4 4.7 31 3-34 6-37 (249)
392 PRK12826 3-ketoacyl-(acyl-carr 46.5 35 0.00075 28.9 4.5 32 3-35 6-38 (251)
393 PF02558 ApbA: Ketopantoate re 46.3 35 0.00076 27.0 4.3 30 6-36 1-30 (151)
394 cd08287 FDH_like_ADH3 formalde 46.0 86 0.0019 28.1 7.3 135 5-167 171-307 (345)
395 cd08269 Zn_ADH9 Alcohol dehydr 45.9 37 0.0008 29.8 4.8 30 5-35 132-162 (312)
396 TIGR02818 adh_III_F_hyde S-(hy 45.9 33 0.00071 31.7 4.6 29 5-34 188-217 (368)
397 PRK14806 bifunctional cyclohex 45.8 30 0.00065 35.4 4.6 30 4-33 4-34 (735)
398 cd08284 FDH_like_2 Glutathione 45.6 25 0.00053 31.6 3.6 28 5-33 170-198 (344)
399 PRK10217 dTDP-glucose 4,6-dehy 45.5 31 0.00067 31.4 4.3 31 4-35 2-33 (355)
400 PLN00203 glutamyl-tRNA reducta 45.0 27 0.00058 34.7 4.0 32 4-35 267-298 (519)
401 PRK11259 solA N-methyltryptoph 44.9 34 0.00075 31.2 4.5 34 1-35 1-34 (376)
402 PRK08163 salicylate hydroxylas 44.9 33 0.00072 31.7 4.5 30 3-33 4-33 (396)
403 PRK05586 biotin carboxylase; V 44.8 31 0.00066 33.1 4.3 31 4-35 3-33 (447)
404 cd08235 iditol_2_DH_like L-idi 44.6 40 0.00087 30.2 4.9 29 5-34 168-197 (343)
405 PLN02896 cinnamyl-alcohol dehy 44.3 37 0.0008 31.0 4.6 31 4-35 11-42 (353)
406 PLN02858 fructose-bisphosphate 44.3 29 0.00062 38.6 4.4 30 4-34 325-354 (1378)
407 TIGR03466 HpnA hopanoid-associ 44.3 33 0.00072 30.4 4.2 30 5-35 2-32 (328)
408 TIGR01771 L-LDH-NAD L-lactate 44.2 21 0.00045 32.7 2.9 29 8-36 1-29 (299)
409 TIGR00514 accC acetyl-CoA carb 44.2 36 0.00077 32.7 4.7 32 1-34 1-32 (449)
410 PRK05732 2-octaprenyl-6-methox 44.2 33 0.00072 31.6 4.3 35 1-35 1-37 (395)
411 PRK03815 murD UDP-N-acetylmura 43.9 32 0.00069 32.8 4.2 29 4-35 1-29 (401)
412 cd08234 threonine_DH_like L-th 43.8 53 0.0011 29.3 5.5 28 5-33 162-190 (334)
413 cd08255 2-desacetyl-2-hydroxye 43.4 99 0.0021 26.7 7.1 29 5-34 100-129 (277)
414 PRK07340 ornithine cyclodeamin 43.4 35 0.00077 31.2 4.3 33 4-36 126-158 (304)
415 PRK00676 hemA glutamyl-tRNA re 43.0 36 0.00079 32.0 4.4 32 4-35 175-206 (338)
416 PRK09291 short chain dehydroge 42.8 46 0.00099 28.4 4.7 33 1-35 1-34 (257)
417 PRK04148 hypothetical protein; 42.6 35 0.00076 27.8 3.7 29 4-34 18-46 (134)
418 cd05279 Zn_ADH1 Liver alcohol 42.5 37 0.00081 31.2 4.4 28 5-33 186-214 (365)
419 PRK07688 thiamine/molybdopteri 42.5 47 0.001 31.0 5.1 40 3-43 24-64 (339)
420 cd05188 MDR Medium chain reduc 42.4 71 0.0015 27.0 5.8 30 5-35 137-166 (271)
421 PF06115 DUF956: Domain of unk 42.2 23 0.00049 28.4 2.4 29 68-98 26-57 (118)
422 PRK15076 alpha-galactosidase; 42.2 20 0.00043 34.7 2.5 14 4-17 2-15 (431)
423 PLN02572 UDP-sulfoquinovose sy 42.2 39 0.00084 32.5 4.6 30 4-34 48-78 (442)
424 PLN02702 L-idonate 5-dehydroge 41.9 50 0.0011 30.2 5.1 31 5-36 184-214 (364)
425 TIGR01214 rmlD dTDP-4-dehydror 41.9 36 0.00078 29.7 4.0 30 5-35 1-31 (287)
426 PRK12827 short chain dehydroge 41.6 47 0.001 28.0 4.6 31 3-34 6-37 (249)
427 PRK07577 short chain dehydroge 41.5 51 0.0011 27.7 4.8 33 1-34 1-34 (234)
428 cd08233 butanediol_DH_like (2R 41.0 44 0.00095 30.3 4.6 29 5-34 175-204 (351)
429 PF00107 ADH_zinc_N: Zinc-bind 40.5 12 0.00026 28.7 0.7 36 92-127 57-92 (130)
430 PRK14989 nitrite reductase sub 40.4 41 0.00089 35.4 4.7 35 1-35 1-38 (847)
431 PRK08125 bifunctional UDP-gluc 40.3 41 0.00089 34.1 4.6 32 4-35 316-348 (660)
432 cd01080 NAD_bind_m-THF_DH_Cycl 40.2 50 0.0011 27.7 4.4 30 4-34 45-75 (168)
433 PRK08264 short chain dehydroge 40.2 52 0.0011 27.8 4.6 30 4-34 7-38 (238)
434 PRK00258 aroE shikimate 5-dehy 40.1 46 0.001 29.8 4.5 31 4-34 124-154 (278)
435 PRK09987 dTDP-4-dehydrorhamnos 39.9 39 0.00085 30.3 4.0 29 4-34 1-30 (299)
436 PRK12439 NAD(P)H-dependent gly 39.6 40 0.00087 31.2 4.1 24 3-26 7-30 (341)
437 cd08294 leukotriene_B4_DH_like 39.6 43 0.00094 29.7 4.2 30 5-35 146-176 (329)
438 cd08262 Zn_ADH8 Alcohol dehydr 39.4 64 0.0014 28.9 5.4 30 5-35 164-193 (341)
439 COG1893 ApbA Ketopantoate redu 39.2 40 0.00086 31.0 4.0 23 4-26 1-23 (307)
440 PRK05225 ketol-acid reductoiso 39.1 18 0.00038 35.6 1.7 22 4-25 37-58 (487)
441 PRK12409 D-amino acid dehydrog 39.0 46 0.001 31.0 4.5 30 4-34 2-31 (410)
442 PF00670 AdoHcyase_NAD: S-aden 38.8 40 0.00087 28.4 3.6 88 4-129 24-113 (162)
443 cd08289 MDR_yhfp_like Yhfp put 38.8 82 0.0018 27.8 5.9 30 5-35 149-179 (326)
444 TIGR01142 purT phosphoribosylg 38.8 43 0.00092 31.0 4.2 30 5-35 1-30 (380)
445 PRK06180 short chain dehydroge 38.4 58 0.0013 28.5 4.8 34 1-35 1-36 (277)
446 PRK12829 short chain dehydroge 38.4 57 0.0012 27.9 4.7 31 3-34 11-42 (264)
447 COG0665 DadA Glycine/D-amino a 37.9 56 0.0012 29.8 4.8 33 1-34 2-34 (387)
448 PRK05565 fabG 3-ketoacyl-(acyl 37.8 59 0.0013 27.3 4.6 31 2-33 4-35 (247)
449 PRK08017 oxidoreductase; Provi 37.4 62 0.0013 27.5 4.7 31 4-35 3-34 (256)
450 TIGR01161 purK phosphoribosyla 37.3 47 0.001 30.6 4.2 29 5-34 1-29 (352)
451 cd05284 arabinose_DH_like D-ar 37.2 73 0.0016 28.5 5.4 31 5-35 170-200 (340)
452 PLN02172 flavin-containing mon 37.0 49 0.0011 32.2 4.4 30 3-33 10-39 (461)
453 cd08300 alcohol_DH_class_III c 36.9 1.1E+02 0.0025 28.0 6.7 29 5-34 189-218 (368)
454 PLN03154 putative allyl alcoho 36.9 60 0.0013 29.8 4.8 29 5-34 161-190 (348)
455 cd01492 Aos1_SUMO Ubiquitin ac 36.8 42 0.0009 28.7 3.5 33 3-36 21-53 (197)
456 PF01210 NAD_Gly3P_dh_N: NAD-d 36.8 52 0.0011 26.8 3.9 100 5-126 1-103 (157)
457 TIGR02622 CDP_4_6_dhtase CDP-g 36.7 60 0.0013 29.6 4.8 31 3-34 4-35 (349)
458 cd08260 Zn_ADH6 Alcohol dehydr 36.7 69 0.0015 28.8 5.1 30 5-35 168-197 (345)
459 PRK08013 oxidoreductase; Provi 36.6 52 0.0011 30.8 4.4 33 1-34 1-33 (400)
460 COG0644 FixC Dehydrogenases (f 36.5 52 0.0011 30.9 4.4 33 1-34 1-33 (396)
461 TIGR03570 NeuD_NnaD sugar O-ac 36.5 60 0.0013 26.6 4.3 31 5-36 1-31 (201)
462 PRK08263 short chain dehydroge 36.5 67 0.0014 28.0 4.9 33 1-34 1-34 (275)
463 cd08240 6_hydroxyhexanoate_dh_ 36.4 62 0.0013 29.2 4.8 28 5-33 178-206 (350)
464 cd08231 MDR_TM0436_like Hypoth 36.2 1.7E+02 0.0037 26.5 7.7 29 5-34 180-209 (361)
465 PRK10084 dTDP-glucose 4,6 dehy 36.1 52 0.0011 29.8 4.2 30 4-33 1-31 (352)
466 TIGR01181 dTDP_gluc_dehyt dTDP 35.9 48 0.001 29.0 3.9 30 5-34 1-32 (317)
467 COG1810 Uncharacterized protei 35.9 1.8E+02 0.0039 25.8 7.3 129 4-176 2-139 (224)
468 PRK08591 acetyl-CoA carboxylas 35.8 58 0.0012 31.1 4.6 31 1-33 1-31 (451)
469 PRK05335 tRNA (uracil-5-)-meth 35.7 52 0.0011 32.0 4.3 32 1-34 1-32 (436)
470 cd08236 sugar_DH NAD(P)-depend 35.5 87 0.0019 28.1 5.6 30 5-35 162-192 (343)
471 PRK09288 purT phosphoribosylgl 35.1 67 0.0014 29.9 4.9 32 3-35 12-43 (395)
472 PF01370 Epimerase: NAD depend 35.0 68 0.0015 26.7 4.5 30 6-36 1-31 (236)
473 TIGR03589 PseB UDP-N-acetylglu 35.0 64 0.0014 29.3 4.6 32 3-34 4-37 (324)
474 PLN02214 cinnamoyl-CoA reducta 34.9 65 0.0014 29.5 4.7 31 4-35 11-42 (342)
475 PRK06182 short chain dehydroge 34.8 73 0.0016 27.7 4.8 33 1-34 1-34 (273)
476 PRK10538 malonic semialdehyde 34.7 67 0.0015 27.5 4.5 30 4-34 1-31 (248)
477 PRK08850 2-octaprenyl-6-methox 34.6 57 0.0012 30.5 4.3 33 1-34 1-34 (405)
478 PRK06914 short chain dehydroge 34.5 75 0.0016 27.6 4.9 34 1-35 1-35 (280)
479 PF00743 FMO-like: Flavin-bind 34.5 52 0.0011 32.7 4.2 29 4-33 2-30 (531)
480 PRK12320 hypothetical protein; 34.5 57 0.0012 33.7 4.6 31 4-35 1-32 (699)
481 cd08238 sorbose_phosphate_red 34.4 1.7E+02 0.0036 27.5 7.5 33 93-125 257-289 (410)
482 PRK07666 fabG 3-ketoacyl-(acyl 34.4 76 0.0016 26.8 4.8 31 4-35 8-39 (239)
483 PRK07102 short chain dehydroge 34.3 71 0.0015 27.1 4.6 29 5-34 3-32 (243)
484 PRK07231 fabG 3-ketoacyl-(acyl 34.2 76 0.0016 26.8 4.7 31 4-35 6-37 (251)
485 cd08285 NADP_ADH NADP(H)-depen 34.1 62 0.0013 29.3 4.4 29 5-34 169-198 (351)
486 cd08264 Zn_ADH_like2 Alcohol d 34.0 87 0.0019 27.8 5.3 29 5-34 165-194 (325)
487 PRK08849 2-octaprenyl-3-methyl 33.6 63 0.0014 30.0 4.4 33 1-34 1-33 (384)
488 PRK00711 D-amino acid dehydrog 33.5 68 0.0015 29.8 4.6 31 4-35 1-31 (416)
489 PLN02260 probable rhamnose bio 33.4 48 0.001 33.4 3.8 27 3-30 380-407 (668)
490 cd08292 ETR_like_2 2-enoyl thi 33.4 99 0.0021 27.2 5.5 31 5-36 142-173 (324)
491 TIGR02992 ectoine_eutC ectoine 33.0 69 0.0015 29.5 4.6 33 4-36 130-162 (326)
492 PLN02686 cinnamoyl-CoA reducta 32.9 72 0.0016 29.6 4.7 33 2-35 52-85 (367)
493 PLN02260 probable rhamnose bio 32.9 63 0.0014 32.6 4.6 33 3-35 6-40 (668)
494 PRK08291 ectoine utilization p 32.8 71 0.0015 29.4 4.6 33 4-36 133-165 (330)
495 PRK06179 short chain dehydroge 32.4 85 0.0018 27.1 4.8 33 1-34 1-35 (270)
496 PRK09135 pteridine reductase; 32.3 84 0.0018 26.4 4.7 30 4-34 7-37 (249)
497 PLN02858 fructose-bisphosphate 32.2 48 0.001 36.9 3.8 30 4-34 5-34 (1378)
498 KOG2013 SMT3/SUMO-activating c 32.1 48 0.001 32.9 3.4 159 4-173 13-196 (603)
499 PF00289 CPSase_L_chain: Carba 32.1 67 0.0014 25.0 3.7 33 3-36 2-34 (110)
500 cd08295 double_bond_reductase_ 31.9 82 0.0018 28.4 4.8 30 5-35 154-184 (338)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-89 Score=628.32 Aligned_cols=240 Identities=52% Similarity=0.835 Sum_probs=230.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcC----CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEE--------cCCee
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV--------KDDKT 68 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~----~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~--------~~~~~ 68 (252)
||.+||||||||||||.++|+++++ +++++|+|||++.++++++|||||||+||+|+ ++++. +++ .
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~ 78 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-V 78 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-E
Confidence 7879999999999999999998875 57999999998899999999999999999999 89988 677 9
Q ss_pred eEECCeeEEEE-eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCC-C
Q 025476 69 LLFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-E 145 (252)
Q Consensus 69 l~i~G~~i~v~-~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~-~ 145 (252)
|.+||++|.++ +++||+++||+++|+|||+||||.|++++.++.|+++||||||||+|++| .|+|||||||+.|++ .
T Consensus 79 l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~ 158 (361)
T PTZ00434 79 LVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTE 158 (361)
T ss_pred EEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCccc
Confidence 99999999986 99999999999999999999999999999999999999999999999877 689999999999997 5
Q ss_pred CCeEEcCCchhhhHHHHHHHH-HhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhc
Q 025476 146 LNIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLR 224 (252)
Q Consensus 146 ~~IIS~asCtT~~Lap~lk~L-~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip 224 (252)
++||||+|||||||+|++|+| ||+|||++++|||||+||++|+++|+|+++||||+|++++||||++||+|+++++|||
T Consensus 159 ~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP 238 (361)
T PTZ00434 159 HHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 238 (361)
T ss_pred CcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecc
Confidence 789999999999999999999 7999999999999999999999999987799999999999999999999999999999
Q ss_pred cCCCceeEEEEEcccchh
Q 025476 225 MFVVLLWSLADRSLLSTV 242 (252)
Q Consensus 225 ~l~gkl~~~a~rVP~~~~ 242 (252)
+|+||++|++||||++-+
T Consensus 239 ~L~GKl~G~a~RVPt~nv 256 (361)
T PTZ00434 239 STKGKLTGMSFRVPTPDV 256 (361)
T ss_pred ccCCceeeEEEecccCcE
Confidence 999999999999999865
No 2
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-81 Score=578.26 Aligned_cols=239 Identities=62% Similarity=0.955 Sum_probs=230.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
|+ +||||||||||||.++|++++++++++|+|||++.++++++|||||||+||+|+ ++++.+++ .|.+||++|++++
T Consensus 1 m~-~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MV-VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFF 77 (337)
T ss_pred Cc-eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEe
Confidence 55 899999999999999999998888999999998899999999999999999999 99999998 9999999999999
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCCCCCeEEcCCchhhhH
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~~~~IIS~asCtT~~L 159 (252)
++||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.++ +|+||||||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 9999999999999999999999999999999999999999999999764 799999999999987778999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCC--CCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEc
Q 025476 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRS 237 (252)
Q Consensus 160 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~--~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rV 237 (252)
+|++|+||++|||++++|||||++|++|.++|+++ ++|||++|++++||||++||++++++||+|+|+||++++|+||
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRV 237 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 237 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEe
Confidence 99999999999999999999999999999999975 5899999999999999999999999999999999999999999
Q ss_pred ccchh
Q 025476 238 LLSTV 242 (252)
Q Consensus 238 P~~~~ 242 (252)
||+.+
T Consensus 238 Pt~~~ 242 (337)
T PTZ00023 238 PVPDV 242 (337)
T ss_pred cccCe
Confidence 99876
No 3
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=2.6e-81 Score=589.43 Aligned_cols=237 Identities=48% Similarity=0.754 Sum_probs=225.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEE-cCCeeeEECCeeEEE
Q 025476 2 GKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV-KDDKTLLFGEKPVTV 78 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~-~~~~~l~i~G~~i~v 78 (252)
|++||||||||||||.++|+++++ +++|+|+|||+ .++++++|||||||+||+|+ ++++. +++ .|.+||++|.+
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~-~L~v~Gk~I~V 150 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDE-TISVDGKPIKV 150 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCC-EEEECCEEEEE
Confidence 348999999999999999998866 57999999996 69999999999999999999 89987 666 99999999999
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC--CCeEEeecCccccCCC-CCeEEcCCch
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPE-LNIVSNASCT 155 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~vV~gVN~~~~~~~-~~IIS~asCt 155 (252)
++++||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.+| +|+||||||++.|++. ++||||||||
T Consensus 151 ~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCT 230 (442)
T PLN02237 151 VSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCT 230 (442)
T ss_pred EEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchH
Confidence 999999999999999999999999999999999999999999999999765 6999999999999875 7899999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEE
Q 025476 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLAD 235 (252)
Q Consensus 156 T~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~ 235 (252)
||||+|++|+|||+|||++++|||||+||++|+++|++ |+||||+|++++||||++||+++++.+|||+|+|||+|+++
T Consensus 231 TNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~-h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~ 309 (442)
T PLN02237 231 TNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIAL 309 (442)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCC-CcccccccccccccccCCcchhhhhceecccCCCceeeEEE
Confidence 99999999999999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred Ecccchh
Q 025476 236 RSLLSTV 242 (252)
Q Consensus 236 rVP~~~~ 242 (252)
|||++-+
T Consensus 310 RVPt~nv 316 (442)
T PLN02237 310 RVPTPNV 316 (442)
T ss_pred ecccCCc
Confidence 9999865
No 4
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=8.7e-81 Score=572.12 Aligned_cols=236 Identities=56% Similarity=0.890 Sum_probs=227.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
.+||||||||||||.++|++++++++++|+|||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|.+++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence 3799999999999999999988888999999996 79999999999999999999 89999998 999999999999999
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCCCCCeEEcCCchhhhHHH
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~~~~IIS~asCtT~~Lap 161 (252)
+|+++||+++|+||||||||.|+++++++.|+++|||+|++|+|++| +|+||||||++.|++ ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 699999999999975 7899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcccch
Q 025476 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLLST 241 (252)
Q Consensus 162 ~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~~~ 241 (252)
++|+|||+|||++++|||||++|++|+++|+++++||||+|++++||||++||++++++||||+|+||++++|+||||..
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999999998779999999999999999999999999999999999999999999987
Q ss_pred h
Q 025476 242 V 242 (252)
Q Consensus 242 ~ 242 (252)
+
T Consensus 238 g 238 (331)
T PRK15425 238 V 238 (331)
T ss_pred e
Confidence 6
No 5
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-80 Score=563.14 Aligned_cols=236 Identities=56% Similarity=0.843 Sum_probs=229.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
+||||||||||||+++|++.+++ ++|+|+|||+ .+++++||||+|||+||+|. ++++.+++ .+.|+|+.|+++.++
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~~ 78 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAER 78 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEecC
Confidence 79999999999999999999998 7999999998 79999999999999999999 99998888 999999999999999
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhC-CCCEEEEcCCCCC-CCeEEeecCccccCCCCCeEEcCCchhhhHH
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~-GakkViis~ps~d-~p~vV~gVN~~~~~~~~~IIS~asCtT~~La 160 (252)
||+++||.++|+|+|+||||.|+++|.+++|+++ |||||++|+|+++ +++||+|||++.|++.++||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999887 9999999999999988999999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcccc
Q 025476 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLLS 240 (252)
Q Consensus 161 p~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~~ 240 (252)
|++|+|+|+|||++++|||+|++|++|+++||| |++|||+|++++||||++||+|+++++|||+|+|||+|+|+|||++
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgp-h~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~ 237 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGP-HKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTP 237 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCc-ccchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCC
Confidence 999999999999999999999999999999998 4889999999999999999999999999999999999999999999
Q ss_pred hhh
Q 025476 241 TVI 243 (252)
Q Consensus 241 ~~~ 243 (252)
.|.
T Consensus 238 ~vs 240 (335)
T COG0057 238 NVS 240 (335)
T ss_pred CcE
Confidence 874
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-80 Score=569.51 Aligned_cols=236 Identities=44% Similarity=0.724 Sum_probs=225.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
+||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|+++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~ 78 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVSD 78 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEEc
Confidence 6999999999999999998876 57999999996 69999999999999999999 89999998 99999999999999
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC--CCeEEeecCccccCC-CCCeEEcCCchhhh
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNC 158 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~vV~gVN~~~~~~-~~~IIS~asCtT~~ 158 (252)
+||+++||+++|+||||||||.|+++++++.|+++|||+|++|+|++| +|+||||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999654 599999999999985 47899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcc
Q 025476 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSL 238 (252)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP 238 (252)
|+|++|+||++|||++++|||||++|++|+++|++ ++||||+|++++||||++||+++++.+++|+|+||++++|+|||
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~-~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVP 237 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDAS-HRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVP 237 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCccccccc-ccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEec
Confidence 99999999999999999999999999999999998 59999999999999999999999999999999999999999999
Q ss_pred cchhh
Q 025476 239 LSTVI 243 (252)
Q Consensus 239 ~~~~~ 243 (252)
++.+.
T Consensus 238 t~~vs 242 (337)
T PRK07403 238 TPNVS 242 (337)
T ss_pred cCCcE
Confidence 98763
No 7
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.8e-79 Score=574.58 Aligned_cols=237 Identities=68% Similarity=1.033 Sum_probs=229.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEE-cCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV-KDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~-~~~~~l~i~G~~i~v~~~~ 82 (252)
+||||||||||||.++|++.+++++++|+||||+.++++++|||||||+||+|+ ++++. +++ .|.+||++|.+++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEecC
Confidence 699999999999999999987777999999999999999999999999999999 99997 677 999999999999999
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcCCchhhhHHHH
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~asCtT~~Lap~ 162 (252)
||++++|+++|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|+
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~ 243 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 243 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999987778999999999999999
Q ss_pred HHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcccchh
Q 025476 163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLLSTV 242 (252)
Q Consensus 163 lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~~~~ 242 (252)
+|+||++|||++++|||||++|++|+++|+++++|||++|++++||||++||++++++||||+|+||++++|+||||..+
T Consensus 244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~g 323 (421)
T PLN02272 244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 323 (421)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCce
Confidence 99999999999999999999999999999987799999999999999999999999999999999999999999999875
No 8
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-78 Score=559.84 Aligned_cols=237 Identities=44% Similarity=0.736 Sum_probs=226.6
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
|.+||||||||||||.++|++++++++++|+|||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEc
Confidence 34899999999999999999988888999999996 69999999999999999999 89999998 99999999999999
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCC-CCCeEEcCCchhhhH
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCL 159 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~-~~~IIS~asCtT~~L 159 (252)
+||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|++| ++++|+|||++.|++ .++||||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 999999999999999999999999999999999999999999999766 567799999999987 478999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEccc
Q 025476 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLL 239 (252)
Q Consensus 160 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~ 239 (252)
+|++|+||++|||++++|||||++|++|+++|++ ++|||++|++++||||++||+++++.++||+|+||++++|+||||
T Consensus 158 ap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~-~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt 236 (343)
T PRK07729 158 APVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNP-HKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 236 (343)
T ss_pred HHHHHHHHHhcCeeEEEEEEEecccCcccccccc-hhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeee
Confidence 9999999999999999999999999999999998 599999999999999999999999999999999999999999999
Q ss_pred chh
Q 025476 240 STV 242 (252)
Q Consensus 240 ~~~ 242 (252)
+.+
T Consensus 237 ~~~ 239 (343)
T PRK07729 237 PNV 239 (343)
T ss_pred cCe
Confidence 875
No 9
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-78 Score=557.85 Aligned_cols=239 Identities=27% Similarity=0.467 Sum_probs=226.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECC-eeEEEEe
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFG 80 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G-~~i~v~~ 80 (252)
|.+||||||||||||+++|++++++++++|+|||+..++++++|||||||+||+|+.++++.+++ .|.+|| ++|.+++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEe
Confidence 34799999999999999999988888999999998889999999999999999995148998888 999999 8999999
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcCCchhhhHH
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~asCtT~~La 160 (252)
+++|+++||+++|+||||||||.|++.+++..|+++|||||+|++|++|+|+||||||++.|+++++||||||||||||+
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 159 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA 159 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeecCCCcccccCCC--CCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcc
Q 025476 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSL 238 (252)
Q Consensus 161 p~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~--~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP 238 (252)
|++|+|||+|||++++|||||+|+ +|...|+|+ ++|||++|++++||+|++||++++++||||+|+||++++|+|||
T Consensus 160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVP 238 (342)
T PTZ00353 160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVP 238 (342)
T ss_pred HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcc
Confidence 999999999999999999999997 677788765 49999999999999999999999999999999999999999999
Q ss_pred cchh
Q 025476 239 LSTV 242 (252)
Q Consensus 239 ~~~~ 242 (252)
|..+
T Consensus 239 t~~v 242 (342)
T PTZ00353 239 VKKG 242 (342)
T ss_pred ccCe
Confidence 9865
No 10
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=7.5e-78 Score=555.05 Aligned_cols=239 Identities=84% Similarity=1.251 Sum_probs=229.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCc-ceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~-~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
++||||||||||||.++|++.+++++++++|||+..++++++|||||||+||+|+ + +++.++++.|.++|++|.++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 4899999999999999999988889999999999899999999999999999999 6 8988443279999999999999
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcCCchhhhHHH
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~asCtT~~Lap 161 (252)
+||+++||++.|+||||||||.|+++++++.|+++|||||++|+|++|+|+||||||++.|+++++||||||||||||+|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999998778899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcccch
Q 025476 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLLST 241 (252)
Q Consensus 162 ~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~~~ 241 (252)
++|+||++|||++++|||||++|++|+++|+++++||||+|++++||||++||++++++||||+|+||++++|+||||..
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~ 243 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVD 243 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcC
Confidence 99999999999999999999999999999998789999999999999999999999999999999999999999999986
Q ss_pred h
Q 025476 242 V 242 (252)
Q Consensus 242 ~ 242 (252)
+
T Consensus 244 g 244 (338)
T PLN02358 244 V 244 (338)
T ss_pred e
Confidence 5
No 11
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1e-77 Score=561.17 Aligned_cols=237 Identities=45% Similarity=0.718 Sum_probs=225.8
Q ss_pred CcceEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEE-cCCeeeEECCeeEEE
Q 025476 2 GKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV-KDDKTLLFGEKPVTV 78 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~-~~~~~l~i~G~~i~v 78 (252)
|++||||||||||||.++|++.++ +.+++++|||+ .++++++|||+|||+||+|+ ++++. +++ .|.+||++|++
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~-~l~v~gk~I~v 135 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDD-AISVDGKVIKV 135 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCC-EEEECCEEEEE
Confidence 448999999999999999999877 57999999997 59999999999999999999 89976 566 89999999999
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCCCCCeEEcCCchhh
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTN 157 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~~~~IIS~asCtT~ 157 (252)
++++||+++||++.|+||||||||.|.++++++.|+++|||||++|+|.++ +|+||||||++.|++.++||||||||||
T Consensus 136 ~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn 215 (395)
T PLN03096 136 VSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTN 215 (395)
T ss_pred EEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHH
Confidence 999999999999999999999999999999999999999999999999764 7999999999999877889999999999
Q ss_pred hHHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEc
Q 025476 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRS 237 (252)
Q Consensus 158 ~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rV 237 (252)
||+|++|+|||+|||++++|||||+||++|+++|++ ++||||+|++++||||++||++++++||||+|+||++++|+||
T Consensus 216 ~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~-~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRV 294 (395)
T PLN03096 216 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRV 294 (395)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEccccccccccCC-CCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEc
Confidence 999999999999999999999999999999999997 5899999999999999999999999999999999999999999
Q ss_pred ccchh
Q 025476 238 LLSTV 242 (252)
Q Consensus 238 P~~~~ 242 (252)
||..+
T Consensus 295 Pv~~g 299 (395)
T PLN03096 295 PTPNV 299 (395)
T ss_pred cccce
Confidence 99865
No 12
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=1.2e-76 Score=544.97 Aligned_cols=235 Identities=55% Similarity=0.865 Sum_probs=224.4
Q ss_pred eEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCe-eEEEEee
Q 025476 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~-~i~v~~~ 81 (252)
||||||||||||.++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++++.++++.|.+||+ +|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999999877 47999999997 79999999999999999999 8999877624999999 9999999
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCCCCCeEEcCCchhhhHH
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~~~~IIS~asCtT~~La 160 (252)
++|++++|+++|+||||||||.|+++++++.|+++|||+|++|+|++| +||+|||||++.|++.++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcccc
Q 025476 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLLS 240 (252)
Q Consensus 161 p~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~~ 240 (252)
|++|+||++|||++++|||||++|++|+++|+++ ++||++|++++||||++||++++++|+||+|+||++++|+||||.
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999974 899999999999999999999999999999999999999999998
Q ss_pred hh
Q 025476 241 TV 242 (252)
Q Consensus 241 ~~ 242 (252)
.+
T Consensus 238 ~g 239 (327)
T TIGR01534 238 NV 239 (327)
T ss_pred Ce
Confidence 65
No 13
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.5e-76 Score=541.91 Aligned_cols=235 Identities=39% Similarity=0.672 Sum_probs=226.1
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
.+||||||||||||.++|++.++++++++++||+..++++++|||||||+||+|+ ++++++++ .|.+||++|++++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~~g~-~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTAEGD-AIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEEcCC-EEEECCEEEEEEecC
Confidence 3899999999999999999998888999999999899999999999999999999 99999998 999999999999999
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC--CCeEEeecCccccCC-CCCeEEcCCchhhhH
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNCL 159 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~vV~gVN~~~~~~-~~~IIS~asCtT~~L 159 (252)
+|++++|+ |+|+||||||.|.++++++.|+++|||+|++|+|++| +|+||||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999997 9999999999999999999999999999999999654 699999999999987 378999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEccc
Q 025476 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLL 239 (252)
Q Consensus 160 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~ 239 (252)
+|++|+||++|||++++|||||++|++|+++|++ ++||||+|++++||||++||++++++|+||+|+||++++|+||||
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~-~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAP-HKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCC-CcccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 9999999999999999999999999999999997 489999999999999999999999999999999999999999999
Q ss_pred chh
Q 025476 240 STV 242 (252)
Q Consensus 240 ~~~ 242 (252)
..+
T Consensus 237 ~~g 239 (334)
T PRK08955 237 ANA 239 (334)
T ss_pred CCe
Confidence 875
No 14
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=9e-76 Score=553.49 Aligned_cols=235 Identities=35% Similarity=0.544 Sum_probs=224.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcC----CCceEEEEe----CCCCChhhhheeeeeecccccCCCcceEEc--CCeeeEECC
Q 025476 4 VKIGINGFGRIGRLVARVILQR----DDVELVAVN----DPFITTDYMTYMFKYDSVHGQWKHHELKVK--DDKTLLFGE 73 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~----~~~~ivain----d~~~~~~~~ayll~ydS~~G~~~~~~v~~~--~~~~l~i~G 73 (252)
.||||||||||||+++|+++++ ++++++||| |. .++++++|||+|||+||+|+ ++++.+ ++ .|++||
T Consensus 128 ~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~-~liing 204 (477)
T PRK08289 128 RDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN-GTITVDEENN-AIIANG 204 (477)
T ss_pred ceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC-CceEeecCCC-EEEECC
Confidence 5999999999999999999876 479999995 54 69999999999999999999 899886 56 899999
Q ss_pred eeEEEEeecCCCCCCCcccCcc--EEEecCCCCCCHHhHHHHHh-CCCCEEEEcCCCCC-CCeEEeecCccccCCCCCeE
Q 025476 74 KPVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNENEYKPELNIV 149 (252)
Q Consensus 74 ~~i~v~~~~dp~~~~w~~~~vd--iV~e~tg~f~~~~~a~~h~~-~GakkViis~ps~d-~p~vV~gVN~~~~~~~~~II 149 (252)
+.|+++++++|+++||+++|+| +|+||||.|.+++.+++|++ +||||||||+|++| +|+||||||++.|+++++||
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~II 284 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIV 284 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEE
Confidence 9999999999999999999999 99999999999999999999 89999999999876 79999999999998778899
Q ss_pred EcCCchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCc
Q 025476 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVL 229 (252)
Q Consensus 150 S~asCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gk 229 (252)
||||||||||+|++|+|||+|||++++|||||++|++|+++|++ +++|||+|++++||||++||++++++|+||+|+||
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~-hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GK 363 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNY-HKGDRRGRSAPLNMVITETGAAKAVAKALPELAGK 363 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhh-hhcCcccceeeeeeEecCCChhhhhhhcccccCCc
Confidence 99999999999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred eeEEEEEcccchh
Q 025476 230 LWSLADRSLLSTV 242 (252)
Q Consensus 230 l~~~a~rVP~~~~ 242 (252)
++++|+||||+.+
T Consensus 364 ltg~avRVPt~nv 376 (477)
T PRK08289 364 LTGNAIRVPTPNV 376 (477)
T ss_pred EEEEEEEeccccE
Confidence 9999999999865
No 15
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-75 Score=537.50 Aligned_cols=235 Identities=36% Similarity=0.634 Sum_probs=225.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcC---CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~---~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
+||||||||||||.++|+++++ +++++++|||+ .++++++|||||||+||+|+ ++++++++ .|.+||++|.+++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEE
Confidence 6999999999999999999875 47999999996 69999999999999999999 99999998 9999999999999
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC-C-CCeEEeecCccccCCCCCeEEcCCchhhh
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNC 158 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~-d-~p~vV~gVN~~~~~~~~~IIS~asCtT~~ 158 (252)
+++|+++||++.|+|+||||||.|.++++++.|+++|||+|++|+|++ | +++||||||++.|++.++|||||||||||
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999975 5 45999999999998778899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcc
Q 025476 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSL 238 (252)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP 238 (252)
|+|++|+||++|||++++|||||++|++|+++|++ ++|||++|++++||||++||++++++|+||+|+||++++|+|||
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~-~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVP 237 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAY-HPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVP 237 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhch-hhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeC
Confidence 99999999999999999999999999999999987 59999999999999999999999999999999999999999999
Q ss_pred cchh
Q 025476 239 LSTV 242 (252)
Q Consensus 239 ~~~~ 242 (252)
|..+
T Consensus 238 v~~g 241 (336)
T PRK13535 238 TINV 241 (336)
T ss_pred ccCc
Confidence 9875
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=6.1e-72 Score=514.09 Aligned_cols=234 Identities=37% Similarity=0.628 Sum_probs=223.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCC---CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~---~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
||||||||||||.++|++.+++ ++++++|||+ .+.++++|||+|||+||+|+ ++++++++ .|.+||+.|+++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence 6999999999999999998764 6999999996 69999999999999999999 99999998 99999999999999
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC-C-CCeEEeecCccccCCCCCeEEcCCchhhhH
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~-d-~p~vV~gVN~~~~~~~~~IIS~asCtT~~L 159 (252)
++|++++|++.++|+||||||.|.++++++.|+++|||+|++|+|.. | ++++|||||++.|++.++||||||||||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999965 3 458999999999987788999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEccc
Q 025476 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLL 239 (252)
Q Consensus 160 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~ 239 (252)
+|++|+||++|||+++.|||||++|++|+++|++ +++||++|.+++||||++||++++++||||+|+||++++||||||
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~-~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv 236 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAY-HHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT 236 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccc-hhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence 9999999999999999999999999999999998 599999999999999999999999999999999999999999999
Q ss_pred chh
Q 025476 240 STV 242 (252)
Q Consensus 240 ~~~ 242 (252)
..+
T Consensus 237 ~~~ 239 (325)
T TIGR01532 237 VNV 239 (325)
T ss_pred cCc
Confidence 865
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-69 Score=476.29 Aligned_cols=221 Identities=59% Similarity=0.938 Sum_probs=213.9
Q ss_pred hHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCCCCCCCcccC
Q 025476 14 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 93 (252)
Q Consensus 14 IGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp~~~~w~~~~ 93 (252)
|||+++ + +++++++++||||++++|++|||+|||+||+|+ ++++.++. +++++|++|.++++++|.+++|.+.+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 567776 2 556999999999999999999999999999999 99999998 89999999999999999999999999
Q ss_pred ccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCee
Q 025476 94 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (252)
Q Consensus 94 vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~ 173 (252)
+|+|+|+||.|++.+.+..|+++||||++||+||.|.||||+|||+++|+++..||||+|||||||+|+.|+|||+|||+
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999877799999999999999999999999999
Q ss_pred EEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcccc
Q 025476 174 EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSLLS 240 (252)
Q Consensus 174 ~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP~~ 240 (252)
|++|||+|++|++|+++|||+.++||++|.+.|||||.+||++++++|+||||+||++||+||||++
T Consensus 155 EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~ 221 (285)
T KOG0657|consen 155 EGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP 221 (285)
T ss_pred cccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=9.5e-51 Score=373.79 Aligned_cols=208 Identities=19% Similarity=0.215 Sum_probs=183.1
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChh---hhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD---YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 6 v~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~---~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||||||||||.++|++.+.+++++|+|||. +++ +++++++|||.|+.+. ..++.+++ .+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecCC--------
Confidence 6999999999999999988889999999995 778 7888888999984433 35777776 7777765
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC--CCeEEeecCccccCCCCCeEEcCCchhhhHH
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~vV~gVN~~~~~~~~~IIS~asCtT~~La 160 (252)
++++. .++|+|+||||.|...+.++.|++.|+|+|++++|++| +++||+|+|++.|.+.+ +|||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 33332 27999999999999999999999999999999999887 47999999999998544 9999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecC-CC---chHHHHHHHhccCCCceeEEEEE
Q 025476 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS-ST---GAAKVFFSRLRMFVVLLWSLADR 236 (252)
Q Consensus 161 p~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~-~t---gaa~~~~kvip~l~gkl~~~a~r 236 (252)
|++++|+++|||++++|||+|+ |++|+ ||||+| ++||||+ +| ++++++++|+|+|+ ++++|+|
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr 210 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV 210 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence 9999999999999999999997 98884 789999 6999999 44 66899999999998 9999999
Q ss_pred cccchhh
Q 025476 237 SLLSTVI 243 (252)
Q Consensus 237 VP~~~~~ 243 (252)
||++.|.
T Consensus 211 VPt~~vs 217 (333)
T TIGR01546 211 VPTTLMH 217 (333)
T ss_pred eCCCCcE
Confidence 9999873
No 19
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=2.6e-51 Score=339.92 Aligned_cols=149 Identities=56% Similarity=0.997 Sum_probs=141.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
|||||||||||||.++|+++.++++++++|||+..++++++|||+|||+||+|+ ++++.+++ .|.++|++|+++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 699999999999999999999999999999999889999999999999999999 89999999 9999999999999999
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC--CCeEEeecCccccCCCCCeEEcCCc
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASC 154 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~vV~gVN~~~~~~~~~IIS~asC 154 (252)
|+++||++.++|||+||||.|++++.++.|+++||||||+|+|++| +||||+|||++.|+++++|||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999887 8999999999999987799999999
No 20
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.4e-46 Score=311.23 Aligned_cols=148 Identities=55% Similarity=0.946 Sum_probs=141.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+||||+|||||||.++|++.+++++++++++|+ .++++++|||+|||+||+|+ ++++.+++ .|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 589999999999999999988888999999997 79999999999999999999 89999988 9999999999999999
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC-CCeEEeecCccccCCCCCeEEcCCc
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASC 154 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~vV~gVN~~~~~~~~~IIS~asC 154 (252)
|+++||++.|+|||+||||.|.+++.++.|+++||||||+|+|++| +++||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999887 4699999999999987779999999
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-41 Score=315.86 Aligned_cols=208 Identities=23% Similarity=0.280 Sum_probs=169.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeee---eecccccCCCcceE-EcCCeeeEECCeeEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK---YDSVHGQWKHHELK-VKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~---ydS~~G~~~~~~v~-~~~~~~l~i~G~~i~v~ 79 (252)
+||||||+|||||.+++++.+++++++++++|. ++++.+|+++ || .||+++ ...+ ..+. .+.+.+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~-~~~~~~~~~-~i~V~~------ 70 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADP-EREKAFEEA-GIPVAG------ 70 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCc-cccccccCC-ceEEcC------
Confidence 699999999999999999998899999999996 5899999887 44 566665 3332 2222 333332
Q ss_pred eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC-CCC--eEEeecCccccCCCCCeEEcCCchh
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAP--MFVVGVNENEYKPELNIVSNASCTT 156 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~-d~p--~vV~gVN~~~~~~~~~IIS~asCtT 156 (252)
+++++. .++|+|+||||.+.+.+.++.|+++| ++||+++|.. ++| +||+|||++.+... ++|+|+||||
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 233332 27999999999999999999999999 7888988853 333 58999999999753 4899999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCC----CchHHHHHHHhccCCCceeE
Q 025476 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKVFFSRLRMFVVLLWS 232 (252)
Q Consensus 157 ~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~----tgaa~~~~kvip~l~gkl~~ 232 (252)
|||+|++++||++|||+++.|||||++|. + ++++ |++++||+|.. +..++++++++|+|+ +++
T Consensus 143 ~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~ 209 (341)
T PRK04207 143 TGLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITT 209 (341)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEE
Confidence 99999999999999999999999999873 3 4553 78999999752 344589999999996 999
Q ss_pred EEEEcccchhh
Q 025476 233 LADRSLLSTVI 243 (252)
Q Consensus 233 ~a~rVP~~~~~ 243 (252)
+|+||||+.+-
T Consensus 210 ~avrVPv~~gh 220 (341)
T PRK04207 210 MAVKVPTTLMH 220 (341)
T ss_pred EEEEcCCCCce
Confidence 99999998763
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-35 Score=269.90 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=171.1
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~ 79 (252)
|..++||| | +|.+||.+++.+.+++ |. +.++ +||. | ..++.+. ++.|+|+++.|
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-fp---v~~l--------~l~~--s--------~~~s~gk-~i~f~g~~~~V- 55 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-LE---IEQI--------SIVE--I--------EPFGEEQ-GIRFNNKAVEQ- 55 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-Cc---hhhe--------eecc--c--------ccccCCC-EEEECCEEEEE-
Confidence 55689999 9 8999999999999887 74 4444 6763 2 2245666 99999999999
Q ss_pred eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC-C-CCeEEcC
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP-E-LNIVSNA 152 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~-~-~~IIS~a 152 (252)
++.++.+|. ++|+||+ +|...++++++...++|| +|||++| +|+|++||+||++.++. + .+||+||
T Consensus 56 --~~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanP 128 (322)
T PRK06901 56 --IAPEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLP 128 (322)
T ss_pred --EECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECC
Confidence 456666785 8999999 888899999999999999 9999997 47999999999998875 3 6799999
Q ss_pred CchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCc------------ccccCCCCCcccccccccceeecCC-CchHHHH
Q 025476 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ------------KTVDGPSSKDWRGGRAASFNIIPSS-TGAAKVF 219 (252)
Q Consensus 153 sCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q------------~~~D~~~~~~~r~~r~~a~nIiP~~-tgaa~~~ 219 (252)
||+|.+|+..|+|||+.|||+++.+|||||+|++. .++++...+. ..++++||+||+. .+...+.
T Consensus 129 NCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~--~~~~iAFNviP~ig~~m~~Et 206 (322)
T PRK06901 129 DPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDE--EEQRLAFDVFPANAQNLELQL 206 (322)
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCC--CceeeeccccccCCccHHHHH
Confidence 99999999999999999999999999999999962 2334321122 2389999999998 4677789
Q ss_pred HHHhccCCCceeEEEEEcccch
Q 025476 220 FSRLRMFVVLLWSLADRSLLST 241 (252)
Q Consensus 220 ~kvip~l~gkl~~~a~rVP~~~ 241 (252)
+|++|+| .++++||+||||-.
T Consensus 207 rKIl~~l-~~VsaTcVRVPV~~ 227 (322)
T PRK06901 207 QKIFPQL-ENVTFHSIQVPVFY 227 (322)
T ss_pred HHHhCCc-ccEEEEEEEcceec
Confidence 9999888 36999999999853
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-32 Score=254.61 Aligned_cols=205 Identities=22% Similarity=0.301 Sum_probs=169.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
+||+|.| .|.+|+.++|.+.++ |.++++++... +..+. .+.++|+.+.+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------------------~~~g~-~l~~~g~~i~v-- 53 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------------------RSAGK-ELSFKGKELKV-- 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------------------ccCCC-eeeeCCceeEE--
Confidence 5999999 899999999999874 55676665432 11223 55566766666
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC-----CCCeEEeecCccccCCC--CCeEEcCC
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--LNIVSNAS 153 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~vV~gVN~~~~~~~--~~IIS~as 153 (252)
.|+...+|. ++|+||+|+|.+.+++++++|+++|+ +||+.+++ |+|++++|||++.++.. .+|||||+
T Consensus 54 -~d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 54 -EDLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred -eeCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 355556785 89999999999999999999999999 88977652 47999999999999764 47999999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEEEEeecCC------------CcccccCCC--CCcccccccccceeecCC-----Cc
Q 025476 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA------------TQKTVDGPS--SKDWRGGRAASFNIIPSS-----TG 214 (252)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~------------~q~~~D~~~--~~~~r~~r~~a~nIiP~~-----tg 214 (252)
|+|+|+++.++||+++|+|+++.|||+|++|+ +|+++|++. ++++|++|++++|++|+. +|
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~g 208 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDG 208 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCC
Confidence 99999999999999999999999999999996 677788542 588999999999999997 77
Q ss_pred hHHH-------HHHHh--ccCCCceeEEEEEcccchhh
Q 025476 215 AAKV-------FFSRL--RMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 215 aa~~-------~~kvi--p~l~gkl~~~a~rVP~~~~~ 243 (252)
++++ +++++ |++ +++.+++|||+...+
T Consensus 209 h~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~ 244 (334)
T PRK14874 209 YTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGH 244 (334)
T ss_pred CcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccE
Confidence 7666 57776 877 599999999998765
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.98 E-value=6.2e-32 Score=250.45 Aligned_cols=206 Identities=22% Similarity=0.286 Sum_probs=164.7
Q ss_pred eEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 5 KIGING-FGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
||+|+| .|.+|+.++|.+.++ |.++++.+.. + +..+. .+.+.|+.+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as--------------~-----------~~~g~-~~~~~~~~~~~~-- 52 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLAS--------------D-----------RSAGR-KVTFKGKELEVN-- 52 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEec--------------c-----------ccCCC-eeeeCCeeEEEE--
Confidence 689999 899999999998775 3343322211 1 12333 566666555552
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC--CCCeEEcCCc
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNASC 154 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--~~~IIS~asC 154 (252)
+.+...|. ++|+||+|+|.+.+++.++.|+++|+ +||+.++ +|+|++|||||++.+++ ..++||||+|
T Consensus 53 -~~~~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 53 -EAKIESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred -eCChHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 22223453 89999999999999999999999999 6898775 24799999999999975 2559999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEEEeecCCC------------cccccCCCCCc-------ccccccccceeecCC---
Q 025476 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT------------QKTVDGPSSKD-------WRGGRAASFNIIPSS--- 212 (252)
Q Consensus 155 tT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~------------q~~~D~~~~~~-------~r~~r~~a~nIiP~~--- 212 (252)
+|+|++++++||+++|+|+++.|||+|++|++ |++++++...+ .+++|++++||||+.
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~ 207 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDF 207 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCc
Confidence 99999999999999999999999999999996 55666654333 789999999999995
Q ss_pred --CchHHHHHHHhccCC-------CceeEEEEEcccchhh
Q 025476 213 --TGAAKVFFSRLRMFV-------VLLWSLADRSLLSTVI 243 (252)
Q Consensus 213 --tgaa~~~~kvip~l~-------gkl~~~a~rVP~~~~~ 243 (252)
+|+++++.|+.|||+ .+++.+++|||+...+
T Consensus 208 ~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~ 247 (339)
T TIGR01296 208 NDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGH 247 (339)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccE
Confidence 689999999999886 3799999999998765
No 25
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=244.77 Aligned_cols=208 Identities=21% Similarity=0.315 Sum_probs=162.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
+||||+| +|.+|+.+++.|.++. |++ .. .++|... ++.|.+.+.++|+.+.+.. .
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~-f~~---~~--------~~~~AS~-----------rSaG~~~~~f~~~~~~v~~-~ 57 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERH-FPF---EE--------LVLLASA-----------RSAGKKYIEFGGKSIGVPE-D 57 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcC-CCc---ce--------EEEEecc-----------cccCCccccccCccccCcc-c
Confidence 6999999 8999999999998863 531 11 1455322 3444412778887766621 1
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC--CCC-eEEcCCc
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELN-IVSNASC 154 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--~~~-IIS~asC 154 (252)
-.+.+.|. ++||||+|.|...++++++...++|+ ++||++| +|+|++|++||.+.+.. ..+ ||+||||
T Consensus 58 ~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNC 133 (334)
T COG0136 58 AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNC 133 (334)
T ss_pred cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCCh
Confidence 25667786 89999999999999999999999998 9999997 47999999999988754 234 9999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcc-cc-----------cCCCCCcccccccccceeecCCCc-----hHH
Q 025476 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TV-----------DGPSSKDWRGGRAASFNIIPSSTG-----AAK 217 (252)
Q Consensus 155 tT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~-~~-----------D~~~~~~~r~~r~~a~nIiP~~tg-----aa~ 217 (252)
||.+|++.|+||+++|||+++.+|||||+|++.. -+ ++....+ .++.+|||+||+..+ +++
T Consensus 134 st~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~--~~~~iAfNviP~I~~~~~ng~t~ 211 (334)
T COG0136 134 STIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILP--IGYPLAFNVIPHIDGFLDNGYTK 211 (334)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCccccc--ccccccccccccCCccccCCccH
Confidence 9999999999999999999999999999999744 22 1211111 278899999999855 555
Q ss_pred -------HHHHHhccCCCceeEEEEEcccch
Q 025476 218 -------VFFSRLRMFVVLLWSLADRSLLST 241 (252)
Q Consensus 218 -------~~~kvip~l~gkl~~~a~rVP~~~ 241 (252)
+.+||+..-.-+++++|+||||-.
T Consensus 212 EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~ 242 (334)
T COG0136 212 EEWKIEAETRKILGDPDIKVSATCVRVPVFY 242 (334)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEEcceec
Confidence 557778766668999999999854
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.97 E-value=1.4e-31 Score=249.10 Aligned_cols=208 Identities=15% Similarity=0.134 Sum_probs=162.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
+||||+| +|.+|+.+++.+.+.++|+ +..+ ++|. | -++.+. .+.++|+.+.+ +
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp---~~~~--------~~~s--s---------~~s~g~-~~~f~~~~~~v---~ 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFD---AIRP--------VFFS--T---------SQLGQA-APSFGGTTGTL---Q 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCc---cccE--------EEEE--c---------hhhCCC-cCCCCCCcceE---E
Confidence 4899999 8999999999998555575 2222 4552 2 234455 78888888766 3
Q ss_pred CCCCC-CCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC--CCCe--EEcC
Q 025476 83 NPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNI--VSNA 152 (252)
Q Consensus 83 dp~~~-~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--~~~I--IS~a 152 (252)
+.+++ .|. ++|+||+|+|...++++++...++|+..++||++| +|+|++|++||++.++. ..+| |+||
T Consensus 55 ~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 55 DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 34444 564 89999999999999999999999994449999997 47999999999998875 2567 8999
Q ss_pred CchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcc------------cccC--------C-----------------CC
Q 025476 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDG--------P-----------------SS 195 (252)
Q Consensus 153 sCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~------------~~D~--------~-----------------~~ 195 (252)
||||+.|+..|+|||+.|||+++.+|||||+|++.+ ++++ . ..
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 212 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGEL 212 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCC
Confidence 999999999999999999999999999999999752 1121 0 11
Q ss_pred CcccccccccceeecCC-----CchHH-------HHHHHh---ccCCCceeEEEEEcccch
Q 025476 196 KDWRGGRAASFNIIPSS-----TGAAK-------VFFSRL---RMFVVLLWSLADRSLLST 241 (252)
Q Consensus 196 ~~~r~~r~~a~nIiP~~-----tgaa~-------~~~kvi---p~l~gkl~~~a~rVP~~~ 241 (252)
+.-.+++++++|+||+. +|+++ +.+|++ |.| +++++|+||||-.
T Consensus 213 ~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l--~VsaTcVRVPV~~ 271 (366)
T TIGR01745 213 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTI--PVDGLCVRIGALR 271 (366)
T ss_pred CcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCC--cEEEEEEecceec
Confidence 23357899999999997 46555 557787 444 6999999999853
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.96 E-value=4.4e-29 Score=231.45 Aligned_cols=207 Identities=15% Similarity=0.258 Sum_probs=163.1
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
.+||||+| +|.+|+.++|.+.+.++|++ .++ +++ .| -++.|. .+.+.|+.+.+. +
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l--------~~~--aS---------~~saGk-~~~~~~~~l~v~-~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNI---AEV--------TLL--SS---------KRSAGK-TVQFKGREIIIQ-E 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccE--------EEE--EC---------cccCCC-CeeeCCcceEEE-e
Confidence 47999999 89999999999987777862 222 333 22 124555 788888877663 3
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCCCCCeEEcCCchh
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKPELNIVSNASCTT 156 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~~~~IIS~asCtT 156 (252)
-+++ .|. ++|+||+|+|...++++++...++|+ +||+.++ .|+|+++++||.+.++...+||+||+|+|
T Consensus 61 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 3454 353 79999999999999999999999998 8999886 36899999999999876447999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEEEeecCCCc------------ccccCCCCCccccc-------ccccceeecCC-----
Q 025476 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQ------------KTVDGPSSKDWRGG-------RAASFNIIPSS----- 212 (252)
Q Consensus 157 ~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q------------~~~D~~~~~~~r~~-------r~~a~nIiP~~----- 212 (252)
+++...|+||+++++|+++.++|+|++|++. .++++...+.-.++ +++++|+||+.
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~ 214 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTD 214 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCcccc
Confidence 9999999999999999999999999999962 23343222333456 89999999997
Q ss_pred CchHH-------HHHHHh--ccCCCceeEEEEEcccch
Q 025476 213 TGAAK-------VFFSRL--RMFVVLLWSLADRSLLST 241 (252)
Q Consensus 213 tgaa~-------~~~kvi--p~l~gkl~~~a~rVP~~~ 241 (252)
.|+++ +.+||| |+| ++++||+||||-.
T Consensus 215 ~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~ 250 (347)
T PRK06728 215 NDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVIS 250 (347)
T ss_pred CCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceec
Confidence 45544 557887 555 6999999999853
No 28
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.95 E-value=5.7e-28 Score=225.38 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=157.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
++|||+| +|.+|+.++|.+.+.++|+ +.++ +++ .|. ++.+. ...++|+...++...
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~---~~~l--------~~~--ss~---------~sg~~-~~~f~g~~~~v~~~~ 58 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFD---LIEP--------VFF--STS---------QAGGA-APSFGGKEGTLQDAF 58 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCC---cCcE--------EEe--cch---------hhCCc-ccccCCCcceEEecC
Confidence 6999999 8999999999665555675 2222 222 221 12222 446778777675433
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCCC--C--CeEEcCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKPE--L--NIVSNAS 153 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~~--~--~IIS~as 153 (252)
+++ .|. ++|+||+|+|...++++++...++|++.+||+++| +|+|++||+||.+.+... . ++|+||+
T Consensus 59 ~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanPn 134 (369)
T PRK06598 59 DID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGGN 134 (369)
T ss_pred Chh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcCC
Confidence 344 353 79999999999999999999999996558999986 469999999999988642 2 4899999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCccc------------cc-------------------------CCCCC
Q 025476 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VD-------------------------GPSSK 196 (252)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~------------~D-------------------------~~~~~ 196 (252)
|+|++++..|+||++.++|+++.++|||++|++.+- ++ +...+
T Consensus 135 C~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (369)
T PRK06598 135 CTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLP 214 (369)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCC
Confidence 999999999999999999999999999999997431 11 21112
Q ss_pred cccccccccceeecCC-----CchHH-------HHHHHh----ccCCCceeEEEEEcccch
Q 025476 197 DWRGGRAASFNIIPSS-----TGAAK-------VFFSRL----RMFVVLLWSLADRSLLST 241 (252)
Q Consensus 197 ~~r~~r~~a~nIiP~~-----tgaa~-------~~~kvi----p~l~gkl~~~a~rVP~~~ 241 (252)
.-.+++++++|+||+. +|+++ +.+||| |+| +++++|+||||-.
T Consensus 215 ~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l--~vs~tcVRVPV~~ 273 (369)
T PRK06598 215 TDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPI--PVDGLCVRVGAMR 273 (369)
T ss_pred cccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCC--eEEEEEEEcceec
Confidence 3356789999999997 46655 557777 444 6999999999854
No 29
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.94 E-value=4.2e-27 Score=196.41 Aligned_cols=84 Identities=51% Similarity=0.686 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCchHHHHHHHhccCCCceeEEEEEcc
Q 025476 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFVVLLWSLADRSL 238 (252)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tgaa~~~~kvip~l~gkl~~~a~rVP 238 (252)
|+|++|+|+|+|||++++|||+|++|++|+++|+|+ +|||++|++++||||++||+++++++|||+|+||++++|||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 799999999999999999999999999999999986 9999999999999999999999999999999999999999999
Q ss_pred cchhh
Q 025476 239 LSTVI 243 (252)
Q Consensus 239 ~~~~~ 243 (252)
++.+-
T Consensus 80 t~~~s 84 (157)
T PF02800_consen 80 TPNVS 84 (157)
T ss_dssp SSSEE
T ss_pred ecccC
Confidence 99763
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=7.8e-25 Score=202.65 Aligned_cols=209 Identities=23% Similarity=0.254 Sum_probs=161.5
Q ss_pred CcceEEEEc-CChhHHHHHHHHHc--CCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEE
Q 025476 2 GKVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (252)
Q Consensus 2 ~~~kv~InG-~GrIGr~v~r~~~~--~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v 78 (252)
+++||||+| +|.+|+.++|.+.+ .|.++++.+.. + ++.|. .+.++|+.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS--------------~-----------~saG~-~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS--------------E-----------ESAGE-TLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc--------------c-----------CcCCc-eEEECCcceEE
Confidence 379999999 89999999999988 46666544432 1 23444 77787876666
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC--CCCeEEc
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSN 151 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--~~~IIS~ 151 (252)
. ++++++|. ++|+||+|++.-.+.++++...++|+ +||+.++ +|.|.++|+||.+.++. ..++|+|
T Consensus 57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAn 129 (336)
T PRK08040 57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAV 129 (336)
T ss_pred E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEEC
Confidence 3 56778886 79999999999999999999999999 7898885 35899999999944432 4679999
Q ss_pred CCchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcc------------cccCCCCCcccccccccceeecCCC---ch-
Q 025476 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSSKDWRGGRAASFNIIPSST---GA- 215 (252)
Q Consensus 152 asCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~------------~~D~~~~~~~r~~r~~a~nIiP~~t---ga- 215 (252)
|+|+|++++..|+||+++++|+++.++|++++|++.+ +++|.+.+...++++.++|++|+.. |.
T Consensus 130 PgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~ 209 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSV 209 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcc
Confidence 9999999999999999999999999999999999743 3333222335677889999999932 22
Q ss_pred ------HHHHHHHhccCCCceeEEEEEcccchhh
Q 025476 216 ------AKVFFSRLRMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 216 ------a~~~~kvip~l~gkl~~~a~rVP~~~~~ 243 (252)
..+++|+|..-+-+++.+++|||+..-+
T Consensus 210 ~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~ 243 (336)
T PRK08040 210 REERRLVDQVRKILQDEGLPISVSCVQSPVFYGH 243 (336)
T ss_pred hHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcE
Confidence 3355666621122489999999998654
No 31
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.92 E-value=1.5e-24 Score=201.76 Aligned_cols=212 Identities=21% Similarity=0.249 Sum_probs=151.4
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEE-eCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECC--eeE
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPV 76 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivai-nd~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G--~~i 76 (252)
||++||+|+| +|.+|+.++|.+.+.+.++++.+ .+.. +.... + ++.|+ +. + .+ . ..+ +.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~-~~G~~---~--~~~~~-~~-~----~~--~--~~~~~~~~ 64 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASER-SAGKT---Y--GEAVR-WQ-L----DG--P--IPEEVADM 64 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChh-hcCCc---c--ccccc-cc-c----cc--c--ccccccce
Confidence 7889999999 89999999999999998999998 3321 11110 0 00010 00 0 00 0 011 223
Q ss_pred EEEeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC-------
Q 025476 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP------- 144 (252)
Q Consensus 77 ~v~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~------- 144 (252)
.+. ..+++. |. ++|+||+|++...+.+.++...++|++ +|+.++ ++.|.+++++|++.|..
T Consensus 65 ~v~-~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~ 137 (349)
T PRK08664 65 EVV-STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKR 137 (349)
T ss_pred EEE-eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhh
Confidence 332 234554 33 799999999999888888888888984 444443 24789999999986632
Q ss_pred ---CCCeEEcCCchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCch----HH
Q 025476 145 ---ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGA----AK 217 (252)
Q Consensus 145 ---~~~IIS~asCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tga----a~ 217 (252)
+.++||||+|+|+|+++.++||++ |||+++.+||+|++|++++-. +..+.+++|++|+..+. ..
T Consensus 138 ~~~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~--------~~~~~~~~N~~p~~~~~ehrh~~ 208 (349)
T PRK08664 138 RGWDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG--------VPSMDIVDNVIPYIGGEEEKIEK 208 (349)
T ss_pred ccCCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc--------chhhhhhcCcccccCchhhhhhH
Confidence 136999999999999999999999 999999999999999986432 22457899999998764 12
Q ss_pred HHHHH--------hccCCCceeEEEEEcccchhhh
Q 025476 218 VFFSR--------LRMFVVLLWSLADRSLLSTVIR 244 (252)
Q Consensus 218 ~~~kv--------ip~l~gkl~~~a~rVP~~~~~~ 244 (252)
++.++ +|.++.+++.+++|||+...+-
T Consensus 209 Ei~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~ 243 (349)
T PRK08664 209 ETLKILGKFEGGKIVPADFPISATCHRVPVIDGHT 243 (349)
T ss_pred HHHHHhhhcccccccCCCceEEEEeEEccccccEE
Confidence 33444 4556788999999999987653
No 32
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.92 E-value=3.1e-24 Score=198.80 Aligned_cols=208 Identities=15% Similarity=0.180 Sum_probs=157.7
Q ss_pred cceEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE
Q 025476 3 KVKIGING-FGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~ 79 (252)
++||+|.| +|.+|+.++|.+.++ |.++++.+... +..|. .+.++|+.+.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------------------~~aG~-~l~~~~~~l~~- 56 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------------------ESAGH-SVPFAGKNLRV- 56 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------------------ccCCC-eeccCCcceEE-
Confidence 37999999 899999999999854 55665555432 12233 56666655555
Q ss_pred eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC----CCCCeEEeecCccccCC--CCCeEEcCC
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS----KDAPMFVVGVNENEYKP--ELNIVSNAS 153 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps----~d~p~vV~gVN~~~~~~--~~~IIS~as 153 (252)
++++..+|. ++|+||.|++...+.++++..+++|+ ++|+.++ .|.|+++|+||.+.++. ..+||+||+
T Consensus 57 --~~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPg 130 (336)
T PRK05671 57 --REVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPS 130 (336)
T ss_pred --eeCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCC
Confidence 233334464 89999999999889999999999998 6898875 36899999999998874 267999999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCccc------------ccCCCCCcccccccccceeecCCC-----chH
Q 025476 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSST-----GAA 216 (252)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~------------~D~~~~~~~r~~r~~a~nIiP~~t-----gaa 216 (252)
|+|+++...|+||++.++++++.++|++++|++.+- .++...+.-.+.++++||++|+.. |++
T Consensus 131 C~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~ 210 (336)
T PRK05671 131 ASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHT 210 (336)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCcc
Confidence 999999999999999999999999999999996332 111111333678999999999863 554
Q ss_pred H-------HHHHHhccCCCceeEEEEEcccchhh
Q 025476 217 K-------VFFSRLRMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 217 ~-------~~~kvip~l~gkl~~~a~rVP~~~~~ 243 (252)
+ +++|+|-..+-+++.+++|||+..-+
T Consensus 211 ~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~ 244 (336)
T PRK05671 211 ALERRLVAELRQLLGLPELKISVTCIQVPVFFGD 244 (336)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhE
Confidence 4 44566532233589999999998654
No 33
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.90 E-value=4e-23 Score=192.00 Aligned_cols=208 Identities=16% Similarity=0.189 Sum_probs=154.7
Q ss_pred cceEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE
Q 025476 3 KVKIGING-FGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~ 79 (252)
++||+|+| .|.+|+.++|.+.++ |.+++..+... +..|. .+.++|+.+.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-------------------------rsaGk-~~~~~~~~~~v- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-------------------------RSAGK-KVTFEGRDYTV- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-------------------------CCCCC-eeeecCceeEE-
Confidence 58999999 899999999999874 44554444221 12233 55556655544
Q ss_pred eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCCC------CCe
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKPE------LNI 148 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~~------~~I 148 (252)
++-+++ .|. ++|+||+|+|...++++++...++|+ +||+.++ ++.|.++|++|.+.++.. .++
T Consensus 60 ~~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 60 EELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred EeCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 222333 353 79999999999999999999888998 7898885 358999999999988752 249
Q ss_pred EEcCCchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCccc------------ccCCCCCcccccccccceeecCCC---
Q 025476 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSST--- 213 (252)
Q Consensus 149 IS~asCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~------------~D~~~~~~~r~~r~~a~nIiP~~t--- 213 (252)
|+||+|+|++++..|+||+++++|+++.++|++++|++.+- +.+.+....++....++|++|+.+
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~ 213 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQ 213 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccc
Confidence 99999999999999999999999999999999999996332 222111344678889999999974
Q ss_pred --chHH-------HHHHHhccCCCceeEEEEEcccchhh
Q 025476 214 --GAAK-------VFFSRLRMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 214 --gaa~-------~~~kvip~l~gkl~~~a~rVP~~~~~ 243 (252)
|+++ +++|++-.-+-+++.+++|||+..-+
T Consensus 214 ~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~ 252 (344)
T PLN02383 214 ENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAH 252 (344)
T ss_pred cCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccE
Confidence 4333 33466521122599999999997654
No 34
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.90 E-value=9.6e-23 Score=189.10 Aligned_cols=210 Identities=18% Similarity=0.196 Sum_probs=152.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECC--eeEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPVTVFG 80 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G--~~i~v~~ 80 (252)
+||+|+| .|.+|+.+++.+.+++.++++++.+.. +.....+ ...|..+. . ++ ..+ ..+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~---~~~g~~~--~~~~~~~~-----~-~~----~~~~~~~~~~-~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP---RSAGKRY--GEAVKWIE-----P-GD----MPEYVRDLPI-V 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh---hhcCCcc--hhhccccc-----c-CC----CccccceeEE-E
Confidence 4899999 799999999999888889999886541 1110111 00010000 0 00 001 12223 2
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC---------CC
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP---------EL 146 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~---------~~ 146 (252)
..+++ .| .++|+||+|++...+.+.++...++|++ +|+.++ +++|.+++++|++.|.. ..
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~ 138 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKG 138 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCc
Confidence 22333 34 3799999999999999999888899994 455443 35899999999987752 13
Q ss_pred CeEEcCCchhhhHHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCch----HHHHHHH
Q 025476 147 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGA----AKVFFSR 222 (252)
Q Consensus 147 ~IIS~asCtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tga----a~~~~kv 222 (252)
++|+||+|+|+|+.+.++||+++++|+++.++|+|++|++++... + .+.+++|++|+..+. ..+++++
T Consensus 139 ~iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~i 210 (341)
T TIGR00978 139 FIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKI 210 (341)
T ss_pred cEEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999976521 1 245789999998664 2467899
Q ss_pred hccCCC--------ceeEEEEEcccchhh
Q 025476 223 LRMFVV--------LLWSLADRSLLSTVI 243 (252)
Q Consensus 223 ip~l~g--------kl~~~a~rVP~~~~~ 243 (252)
|+.+.+ +++.+++|||+...+
T Consensus 211 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~ 239 (341)
T TIGR00978 211 LGKLENGKIEPAPFSVSATTTRVPVLDGH 239 (341)
T ss_pred hCccccCcccCCCceEEEEEEEcCccccE
Confidence 987744 599999999998765
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.83 E-value=1.7e-19 Score=167.60 Aligned_cols=210 Identities=17% Similarity=0.162 Sum_probs=149.2
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCe-eEEE
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTV 78 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~-~i~v 78 (252)
|| +||+|+| .|.+|+.+++.+.+.++++++++.+.. .... .+ ...|+++. +. ...+
T Consensus 1 ~m-~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~---~l--~~~~~~~~---------------~~~~~~~ 58 (343)
T PRK00436 1 MM-IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGK---PL--SDVHPHLR---------------GLVDLVL 58 (343)
T ss_pred CC-eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCc---ch--HHhCcccc---------------cccCcee
Confidence 56 8999999 599999999999998899999987731 1110 01 00111111 10 1112
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC------C------------------CCeEE
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------D------------------APMFV 134 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~------d------------------~p~vV 134 (252)
.+.+...|. ++|+||.|++.....+.+...+++|+ .||+.+++ | .|..+
T Consensus 59 ---~~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~l 131 (343)
T PRK00436 59 ---EPLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGL 131 (343)
T ss_pred ---ecCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeec
Confidence 122222343 79999999999999999999988887 89988752 3 58999
Q ss_pred eecCccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCee--EEEEEEEeecCCCccc-ccCCCCCcccccccccceeecC
Q 025476 135 VGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSSKDWRGGRAASFNIIPS 211 (252)
Q Consensus 135 ~gVN~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~--~~~~tTvha~t~~q~~-~D~~~~~~~r~~r~~a~nIiP~ 211 (252)
+++|.+.++. .++|+||+|+|+++...|+||++..+|+ +..++|++++|++.+- .+.. +...+.+.-.++|++|+
T Consensus 132 pe~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~-~~~~~~~~~~~y~~~~h 209 (343)
T PRK00436 132 PELNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGT-LFSEVNENLRPYKVGGH 209 (343)
T ss_pred CccCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccc-cchhhcCCeeecccCCC
Confidence 9999998874 5899999999999999999999999898 8999999999998653 3321 11222222236777776
Q ss_pred CCchHHHHHHHhccCCCceeEEEEEcccchhh
Q 025476 212 STGAAKVFFSRLRMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 212 ~tgaa~~~~kvip~l~gkl~~~a~rVP~~~~~ 243 (252)
.+ ..++.+.+-.+.++++.+++|||+..-+
T Consensus 210 ~h--~~Ei~~~l~~~~~~v~~t~~~vPv~~G~ 239 (343)
T PRK00436 210 RH--TPEIEQELSALAGEVSFTPHLVPMTRGI 239 (343)
T ss_pred CC--HHHHHHHHHHhcCCEEEEeEEecccCcE
Confidence 53 3455555443323799999999997654
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.76 E-value=1.8e-17 Score=154.33 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=141.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCe-eEEEEee
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~-~i~v~~~ 81 (252)
+||+|.| +|.+|+.++|.+.+.|.++++++.+..-+... .+ ...|+++. +. ...+ .+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk---~~--~~~~~~l~---------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGK---PV--SEVHPHLR---------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCC---Ch--HHhCcccc---------------ccCCcee-ec
Confidence 4899999 59999999999999999999877543211110 00 11111111 11 1112 11
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----C-------------------CCCeEEeec
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----K-------------------DAPMFVVGV 137 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~-------------------d~p~vV~gV 137 (252)
.++++ |.+ ++|+||.|++...+.+.++..+++|+ +||+.++ + +.|..++++
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 23332 321 79999999999999999999888886 7887774 1 378899999
Q ss_pred CccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCee--EEEEEEEeecCCCcccccCCCCCcccccccccceeecCCCch
Q 025476 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGA 215 (252)
Q Consensus 138 N~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~--~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~tga 215 (252)
|.++++ ..++|+||+|.++++...|+||++++.|+ +..++|++++|++.+-.....+...+...-.+.|+.|+. .
T Consensus 135 n~~~i~-~~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~--h 211 (346)
T TIGR01850 135 HREEIK-GARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHR--H 211 (346)
T ss_pred CHHHhC-CCcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcC--c
Confidence 998886 46799999999999999999999998887 799999999999876422111111221112234555543 2
Q ss_pred HHHHHHHhccC---CCceeEEEEEcccchhh
Q 025476 216 AKVFFSRLRMF---VVLLWSLADRSLLSTVI 243 (252)
Q Consensus 216 a~~~~kvip~l---~gkl~~~a~rVP~~~~~ 243 (252)
..++.+.+-.+ +-+++.++.|||+..-+
T Consensus 212 ~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~ 242 (346)
T TIGR01850 212 TPEIEQELGRLAGGKVKVSFTPHLVPMTRGI 242 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeEEeeccccE
Confidence 23444433222 22599999999998654
No 37
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.74 E-value=4.2e-18 Score=150.63 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=120.5
Q ss_pred CCcceEE-EEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEE
Q 025476 1 MGKVKIG-ING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (252)
Q Consensus 1 m~~~kv~-InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v 78 (252)
|.--|+| |.| +|.+|+..+-.+.++|.|+|-......-+...- |.+ -|+|+ .+.- |.=.-+++.|
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~-ya~-----a~~wk-qt~~------lp~~~~e~~V 67 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR-YAF-----AGNWK-QTDL------LPESAHEYTV 67 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc-eEe-----cccch-hccc------ccchhhhhhH
Confidence 3334777 999 899999999989899988765553221111111 222 13333 1110 0000134444
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC---------
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--------- 144 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--------- 144 (252)
. +-+++.|. ++||||+..+...+.|.-+...++|. +|+|+.+ +++|++||.||.|.++.
T Consensus 68 ~-ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k 140 (361)
T KOG4777|consen 68 E-ECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGK 140 (361)
T ss_pred h-hcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCC
Confidence 2 34566553 89999999999888888888888998 9999985 35999999999998863
Q ss_pred --CCCeEEcCCchhhhHHHHHHHHHhhc-CeeEEEEEEEeecCCCc
Q 025476 145 --ELNIVSNASCTTNCLAPLAKVIHDKF-GIVEGLMTTVHSITATQ 187 (252)
Q Consensus 145 --~~~IIS~asCtT~~Lap~lk~L~~~f-gI~~~~~tTvha~t~~q 187 (252)
..-||+|+||+|..+...+||||++| .|++..++|||++|++.
T Consensus 141 ~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG 186 (361)
T KOG4777|consen 141 MGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAG 186 (361)
T ss_pred CCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCC
Confidence 12499999999999999999999999 59999999999999963
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.71 E-value=2.7e-16 Score=148.17 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=139.8
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
++||+|.| +|.+|+.++|.+.++|.++++.+..- +..|+.- ..... .+ .+....-++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~--------------~saG~~i----~~~~~-~l--~~~~~~~~~- 95 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD--------------RKAGQSF----GSVFP-HL--ITQDLPNLV- 95 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh--------------hhcCCCc----hhhCc-cc--cCcccccee-
Confidence 47999999 89999999999999998998877542 1112110 00000 11 111111111
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CC--------CCeEEeecCccc-cC----
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KD--------APMFVVGVNENE-YK---- 143 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d--------~p~vV~gVN~~~-~~---- 143 (252)
+.+..+|. ++|+||.|+|...+.+.++. ++.|+ +||+.++ ++ .|..++++|.+. |.
T Consensus 96 -~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~ 169 (381)
T PLN02968 96 -AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTEL 169 (381)
T ss_pred -cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchh
Confidence 12222353 79999999999888888887 46775 6787775 23 578888888764 32
Q ss_pred -----CCCCeEEcCCchhhhHHHHHHHHHhhcCe--eEEEEEEEeecCCCcccc-cCCCCCcc-cccccccceeecCCCc
Q 025476 144 -----PELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTV-DGPSSKDW-RGGRAASFNIIPSSTG 214 (252)
Q Consensus 144 -----~~~~IIS~asCtT~~Lap~lk~L~~~fgI--~~~~~tTvha~t~~q~~~-D~~~~~~~-r~~r~~a~nIiP~~tg 214 (252)
...++|+||+|.|+++...|+||+++++| ++..+++++++|++.+-. +.....+. ..-|..++|..|+...
T Consensus 170 ~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pE 249 (381)
T PLN02968 170 QREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPE 249 (381)
T ss_pred CHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcch
Confidence 13579999999999999999999999999 789999999999986542 21111110 0125666777766532
Q ss_pred hHHHHHHHh-ccCCCceeEEEEEcccchhh
Q 025476 215 AAKVFFSRL-RMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 215 aa~~~~kvi-p~l~gkl~~~a~rVP~~~~~ 243 (252)
.-+.+.+++ +.+ +++.+++|||+..-+
T Consensus 250 ie~~~~~~~~~~~--~v~ft~~~vPv~rG~ 277 (381)
T PLN02968 250 IEQGLADAAGSKV--TPSFTPHLMPMSRGM 277 (381)
T ss_pred HHHHHHHHhCCCC--CEEEEeEEeeccccE
Confidence 222233332 333 599999999998654
No 39
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.63 E-value=7.7e-16 Score=140.56 Aligned_cols=156 Identities=19% Similarity=0.115 Sum_probs=116.8
Q ss_pred CC-cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE
Q 025476 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 1 m~-~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~ 79 (252)
|| ++|+||+|+|.||+.++..+...++++++++.|+ +++.- .+++...||.. ..++|.+- +
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi--d~es~--gla~A~~~Gi~------------~~~~~ie~-L- 62 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI--DPESD--GLARARRLGVA------------TSAEGIDG-L- 62 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC--ChhhH--HHHHHHHcCCC------------cccCCHHH-H-
Confidence 44 7999999999999998888887788999999987 44321 01111112210 01111110 1
Q ss_pred eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-CCCCeEEeecCccccCC--CCCeEEcCCchh
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKP--ELNIVSNASCTT 156 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-~d~p~vV~gVN~~~~~~--~~~IIS~asCtT 156 (252)
.++.+|. ++|+||+|||.....+.++..+++|+ .+|+..+ .+.|++||+||.+.... ..++|+|++|+|
T Consensus 63 ----L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 63 ----LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred ----HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 1122454 79999999999999999999999998 6676554 46899999999988864 468999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEEEeecC
Q 025476 157 NCLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (252)
Q Consensus 157 ~~Lap~lk~L~~~fgI~~~~~tTvha~t 184 (252)
+.++..++++++. ++.+.. +||++.|
T Consensus 135 i~~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 135 IPIVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHHhcccCcC-ceeeee-eeehhhc
Confidence 9999999998766 888877 9999998
No 40
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.56 E-value=2.3e-14 Score=131.71 Aligned_cols=175 Identities=12% Similarity=0.098 Sum_probs=125.3
Q ss_pred CcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 2 ~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
|++||||+| .|.+|+.++|.+.++|.++++++..-. +. .+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~---------------------------~~-~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK---------------------------RK-DA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC---------------------------CC-cc-----------
Confidence 348999999 899999999999999988877664320 00 11
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC--CCCeEEcCC
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNAS 153 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--~~~IIS~as 153 (252)
.+....|. ++|+||.|++...++++++...+.|+ +||+.++ ++.|..++++|++..+. ..++|+||.
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 11122354 78999999999999999999888999 7898875 35899999999754432 467999999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEEEEeecCC---CcccccCCCCCcccc-cccccceeecCCCc----hHHHHHHHhcc
Q 025476 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKTVDGPSSKDWRG-GRAASFNIIPSSTG----AAKVFFSRLRM 225 (252)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~tTvha~t~---~q~~~D~~~~~~~r~-~r~~a~nIiP~~tg----aa~~~~kvip~ 225 (252)
|.++++...|+||+++..|++...++++++|+ +.+-.. .+..- --....|+.|..-+ ...++.+.+..
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~----~~~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~~ 191 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMI----AAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAGL 191 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccch----HHHhhhhhhhccCeeeccCCcCCcchHHHHHHhcc
Confidence 99999999999999986676665789999964 322110 11110 00245688888644 34466666543
No 41
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.44 E-value=5.4e-13 Score=121.26 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=112.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+||||+|.|+||+.++..+.+.++++++++.|+ +++... +++...+|. ...+++.+.-+ ++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~--d~es~~--la~A~~~Gi------------~~~~~~~e~ll---~~ 62 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI--DPESDG--LARARELGV------------KTSAEGVDGLL---AN 62 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC--CcccHH--HHHHHHCCC------------CEEECCHHHHh---cC
Confidence 799999999999999888877778999999987 343210 000111110 11122211111 11
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCC--CCCeEEcCCchhhhHHH
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAP 161 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~--~~~IIS~asCtT~~Lap 161 (252)
.++|+|++||+.....+.+...+++|. .||.-.|..+.|++|+.||.++... +.++|++++|.|+.+..
T Consensus 63 --------~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~~ 133 (285)
T TIGR03215 63 --------PDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVA 133 (285)
T ss_pred --------CCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHHH
Confidence 268999999999999999999999997 3444445557899999999988864 46899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEEEeecCC
Q 025476 162 LAKVIHDKFGIVEGLMTTVHSITA 185 (252)
Q Consensus 162 ~lk~L~~~fgI~~~~~tTvha~t~ 185 (252)
.++.+++...+ ..++||++.+.
T Consensus 134 al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 134 AISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHhhccccE--EEEEEEEeecc
Confidence 99999988755 57788999986
No 42
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.43 E-value=7.4e-13 Score=121.40 Aligned_cols=137 Identities=14% Similarity=0.179 Sum_probs=109.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
.||+|.| .|..|..++|.+...|++|++.+..-. + |. ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-------~----------~~-----------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-------R----------KD-----------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-------c----------cC-----------------------cC
Confidence 4899999 899999999999999999988885421 0 00 01
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccCC--CCCeEEcCCch
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNASCT 155 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~~--~~~IIS~asCt 155 (252)
+++++ + .++|+||.|++...++++++...++|+ +||+.++ ++.|..+|++|.+..+. ..++||||.|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 268999999999999999998888888 6898874 35899999998654432 46899999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEEEEeecCC
Q 025476 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITA 185 (252)
Q Consensus 156 T~~Lap~lk~L~~~fgI~~~~~tTvha~t~ 185 (252)
++++...|+||+++..|++...+++++.|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999987777766799999987
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.88 E-value=9e-10 Score=87.55 Aligned_cols=113 Identities=27% Similarity=0.341 Sum_probs=78.3
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
||+|+| +|.+|+.++|.+.+.|+++++.+.....+... ++...++.+. +...+.+. +.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~-----~~~~~~~~~~--------------~~~~~~~~-~~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK-----PLSEVFPHPK--------------GFEDLSVE-DAD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS-----BHHHTTGGGT--------------TTEEEBEE-ETS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC-----eeehhccccc--------------cccceeEe-ecc
Confidence 799999 99999999999999999999988765311111 1111121111 01223332 123
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-----CCCCeEEeecCccccC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYK 143 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~~ 143 (252)
++.+ .++|+||.|++...+.+.++..++.|+ .||+.++ ++.|++++++|.+.++
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 289999999999999999999999999 7898875 2589999999987763
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.63 E-value=6.3e-07 Score=83.15 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=118.3
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECC-eeEEE
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTV 78 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G-~~i~v 78 (252)
|| +||+|+| .|-.|-.++|.+..+|++|+..+.... + .|+- +. +. .....| ..+++
T Consensus 1 ~~-~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~----~----------~g~~----~~--~~-~p~l~g~~~l~~ 58 (349)
T COG0002 1 MM-IKVGIVGASGYTGLELLRLLAGHPDVELILISSRE----R----------AGKP----VS--DV-HPNLRGLVDLPF 58 (349)
T ss_pred CC-ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh----h----------cCCc----hH--Hh-Cccccccccccc
Confidence 44 8999999 899999999999999999965554321 0 1110 00 00 000111 11222
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC---C--------------C----CeEEee-
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK---D--------------A----PMFVVG- 136 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~---d--------------~----p~vV~g- 136 (252)
+..|++.+ ...++|+||.|++...+++.++..++.|++ ||+.+.+ + . .--|||
T Consensus 59 -~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 59 -QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred -ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 22445554 223689999999999999999999999994 7876531 0 0 245555
Q ss_pred --cCccccCCCCCeEEcCCchhhhHHHHHHHHHhhcC--eeEE-EEEEEeecCCCcccccCCCCCcccccccccceeecC
Q 025476 137 --VNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFG--IVEG-LMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS 211 (252)
Q Consensus 137 --VN~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fg--I~~~-~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~ 211 (252)
.|.|+++ ..+.|+||-|-.+|....++||-++-= .+.. .+..+=.+|+..+-.-. ...+ .....|+.|.
T Consensus 134 pEl~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~----~~~~-~e~~~~~~~Y 207 (349)
T COG0002 134 PELHREKIR-GAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASV----KNHF-PEVNDSLRPY 207 (349)
T ss_pred cccCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccc----cccc-hhhccccccc
Confidence 5555555 467999999999999999999998722 2331 33333334443222110 0000 1123477776
Q ss_pred C---CchHHHHHHHhccCCCc
Q 025476 212 S---TGAAKVFFSRLRMFVVL 229 (252)
Q Consensus 212 ~---tgaa~~~~kvip~l~gk 229 (252)
. +-...++.+-+..|.++
T Consensus 208 ~~~~HrH~pEi~q~l~~l~~~ 228 (349)
T COG0002 208 GLTGHRHTPEIEQHLGRLAGR 228 (349)
T ss_pred cccccCchHHHHHHhhhcccC
Confidence 4 44455676666666643
No 45
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.24 E-value=2.8e-06 Score=67.14 Aligned_cols=111 Identities=22% Similarity=0.236 Sum_probs=68.7
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
|++|+| .|++|+.+++.+.+.++++++++.+. +. .....++ ..|+ ++ .+ + ++ .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~--~~-~~~~~~~--~~~~-------------~~--~~--~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS--AR-SAGKRVS--EAGP-------------HL--KG--E-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec--hh-hcCcCHH--HHCc-------------cc--cc--c-cc--cc
Confidence 689999 69999999999988888999999543 11 0000000 0011 11 00 0 11 12
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHH---HHHhCCCCEEEEcCCC-----CCCCeEEeecCcccc
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAPS-----KDAPMFVVGVNENEY 142 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~---~h~~~GakkViis~ps-----~d~p~vV~gVN~~~~ 142 (252)
.+...|.+.+.|+||.|++.....+... ..++.|+ ++|+.++ .|.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2222344458999999999876666433 3345555 8887764 357999999998755
No 46
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.98 E-value=1.9e-05 Score=71.03 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=62.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+||||+|+|+||+.+++.+.+.++++++++.+.....+... . .+ + ..+.++ .+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~---------------------~-~~--~-~~~~~~--~d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR---------------------R-AL--G-EAVRVV--SS 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh---------------------h-hh--c-cCCeee--CC
Confidence 59999999999999999998888899988875421111100 0 00 0 012232 34
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.+.+ +..+|+|+|||+.....+.+...+++|.. |++-.|
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 4444 23689999999988888999999999964 444333
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.93 E-value=1.9e-05 Score=71.23 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=87.0
Q ss_pred CcceEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE
Q 025476 2 GKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~--~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~ 79 (252)
|.+||||+|+|.||+.+++.+... +.++++++++. +++....+ .+. .++
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~~~~-------------------------~~~-~~~- 51 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLPPAL-------------------------AGR-VAL- 51 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHh-------------------------hcc-Ccc-
Confidence 348999999999999999988653 34899999876 22111000 011 112
Q ss_pred eecCCCCC-CCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC-CCCCeEEeecCccccCCCCCeEEcCCchhh
Q 025476 80 GVRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKPELNIVSNASCTTN 157 (252)
Q Consensus 80 ~~~dp~~~-~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps-~d~p~vV~gVN~~~~~~~~~IIS~asCtT~ 157 (252)
..+++++ .| ..|+|+||+|..--+|++++.|++|+.-+++|-.. .| +-+-..+- +......+-|--||=..-
T Consensus 52 -~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD-~~~~~~l~-~~A~~~g~~i~ipSGAig 125 (267)
T PRK13301 52 -LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALAD-DALRARLI-AAAEAGGARIRVPAGAIA 125 (267)
T ss_pred -cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcC-HHHHHHHH-HHHHhCCCEEEEeChHHH
Confidence 1445553 44 68999999999999999999999999887777442 33 11100000 011111122222443333
Q ss_pred hHHHHHHHHHhhcCeeEEEEEEEeecCC
Q 025476 158 CLAPLAKVIHDKFGIVEGLMTTVHSITA 185 (252)
Q Consensus 158 ~Lap~lk~L~~~fgI~~~~~tTvha~t~ 185 (252)
.|-- ++.. ...|++++.+||--+..+
T Consensus 126 GlD~-l~aa-~~~~~~~v~~~t~K~P~s 151 (267)
T PRK13301 126 GLDY-LQAV-AGRDDAEVVYESRKPVAA 151 (267)
T ss_pred hHHH-HHHh-hccCceEEEEEEecChhH
Confidence 3322 2222 346899999888765543
No 48
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.87 E-value=2.8e-05 Score=72.18 Aligned_cols=90 Identities=27% Similarity=0.388 Sum_probs=64.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
|+++||+|+|+|.||+.+++++.+.++++++++.|.. +++.+. . . +.++.
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~---------------------~-~-------~~v~~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD---------------------T-E-------TPVYA 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh---------------------h-c-------CCccc
Confidence 7789999999999999999999888899999998873 112210 0 0 01111
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
..|... +. .++|+|+-|++.....+.+...+++|.. ||.+
T Consensus 51 ~~d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s 90 (324)
T TIGR01921 51 VADDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDS 90 (324)
T ss_pred cCCHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEEC
Confidence 111111 11 3689999999999999999999999973 5554
No 49
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.79 E-value=5e-05 Score=68.70 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=60.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHHc-CCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~-~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~ 79 (252)
|+++||||+|+|+||+.+++++.. .++++++++.|+ +++....+.+ .||. . ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~----------~----------~~- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR----------P----------PP- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC----------C----------cc-
Confidence 567999999999999999999876 367999999987 3433211110 0110 0 00
Q ss_pred eecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
..+++++-. ++|+|++|++.....+.+...+++|.
T Consensus 58 -~~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk 92 (271)
T PRK13302 58 -VVPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK 92 (271)
T ss_pred -cCCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC
Confidence 023333322 57999999999888899899999885
No 50
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=97.70 E-value=8.2e-05 Score=63.42 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=56.1
Q ss_pred HHHHHhh-cCeeEEEEEEEeecCCCccc------------ccCCCCCcccccccccceeecCCCc-------hHH-----
Q 025476 163 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSSTG-------AAK----- 217 (252)
Q Consensus 163 lk~L~~~-fgI~~~~~tTvha~t~~q~~------------~D~~~~~~~r~~r~~a~nIiP~~tg-------aa~----- 217 (252)
|+||+++ ++++++.++|++++|++.+- +.+...++.-+...+++|++|+.-+ ..+
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 99999999999999998552 2221123445567899999999743 122
Q ss_pred --HHHHHhccCCCceeEEEEEcccchhh
Q 025476 218 --VFFSRLRMFVVLLWSLADRSLLSTVI 243 (252)
Q Consensus 218 --~~~kvip~l~gkl~~~a~rVP~~~~~ 243 (252)
+.++++..- .+++.+|+|||+..-+
T Consensus 81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~ 107 (184)
T PF02774_consen 81 IAETRKILGFP-PRVSFTCVRVPVFRGH 107 (184)
T ss_dssp HHHHHHHCTET-TEEEEEEEEESSSSEE
T ss_pred hccccceeecc-ccccccEEEEeeeeeE
Confidence 223333333 3899999999987654
No 51
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.67 E-value=8.2e-05 Score=67.07 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=62.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||+|+| +|++|+.+++.+.+.++++++++.|.. +.+.. .+|. +.+. + ... .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~~--~~~~--------~-~~~-~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTDA--GELA--------G-IGK-VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCCH--HHhc--------C-cCc-CC--ceee--C
Confidence 6999999 799999999999888899999998831 22111 1110 0000 0 000 01 2232 3
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
|++.+ ...+|+|+|+|......+.+...+++|.. +|+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 44444 13589999999988888999999999964 455
No 52
>PRK11579 putative oxidoreductase; Provisional
Probab=97.54 E-value=0.0003 Score=65.18 Aligned_cols=94 Identities=27% Similarity=0.440 Sum_probs=64.7
Q ss_pred CC-cceEEEEcCChhHH-HHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEE
Q 025476 1 MG-KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (252)
Q Consensus 1 m~-~~kv~InG~GrIGr-~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v 78 (252)
|+ ++||||+|+|.||+ .+++++...+++++++|.|+ +.+...- + | . + ..+
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~----~---~--------~---------~~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--D----W---P--------T---------VTV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--h----C---C--------C---------Cce
Confidence 54 48999999999998 46787777778999999997 4443210 0 1 0 0 011
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
+ .|.+++ ..+.++|+|+-||+.....+.+...+++| |-|++--|
T Consensus 53 ~--~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (346)
T PRK11579 53 V--SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKP 96 (346)
T ss_pred e--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCC
Confidence 1 122221 11237899999999999999999999998 46777666
No 53
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.51 E-value=0.00025 Score=66.11 Aligned_cols=35 Identities=34% Similarity=0.666 Sum_probs=30.1
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~---------~~~ivaind~ 36 (252)
|.+||+|.|+|.||+.+++.+.+.+ ++++++|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 4599999999999999999886552 6999999885
No 54
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.46 E-value=0.0003 Score=62.15 Aligned_cols=148 Identities=23% Similarity=0.230 Sum_probs=84.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcC-CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~-~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
++|||+|+|+||..+++.+.+. .+++++++.|. +.+..-.+.+ + ++++.. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~~--~-------------------~~~~~~-----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELEA--S-------------------VGRRCV-----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHHh--h-------------------cCCCcc-----c
Confidence 5899999999999999988644 36999999886 4443322221 0 111111 1
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcCCchhhhHHHH
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~asCtT~~Lap~ 162 (252)
+.+++- .++|+++||++.---+++.++.|++|..-+|+|...--+|-+.--. .+..+....-|--+|-..-.|--
T Consensus 53 ~ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl-~~lak~~~~rv~~pSGAiGGlD~- 127 (255)
T COG1712 53 DIDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERL-RELAKCGGARVYLPSGAIGGLDA- 127 (255)
T ss_pred cHHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHH-HHHHhcCCcEEEecCccchhHHH-
Confidence 111111 3789999999988788999999999998877776521122110000 00011111222233332222221
Q ss_pred HHHHHhhcCeeEEEEEEEeecCC
Q 025476 163 AKVIHDKFGIVEGLMTTVHSITA 185 (252)
Q Consensus 163 lk~L~~~fgI~~~~~tTvha~t~ 185 (252)
++-+ ..-+|+++..||.-+..+
T Consensus 128 l~aa-r~g~i~~V~lttrKpp~~ 149 (255)
T COG1712 128 LAAA-RVGGIEEVVLTTRKPPAE 149 (255)
T ss_pred HHHh-hcCCeeEEEEEeecChHH
Confidence 1111 124799999999987764
No 55
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.44 E-value=0.00026 Score=63.72 Aligned_cols=88 Identities=28% Similarity=0.412 Sum_probs=60.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||||+|+|+||+.+++.+.+.+ +++++++.|+ +.+....+.+ . ++. .++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~-----------------~----~~~---~~~--~ 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS-----------------K----TGA---KAC--L 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH-----------------h----cCC---eeE--C
Confidence 59999999999999999987764 6999999987 3433211110 0 010 111 2
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
+.+++. .++|+|++|++.....+.+...+++|.. |++
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv 90 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VII 90 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEE
Confidence 333333 2689999999988888888888998864 444
No 56
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.33 E-value=0.00037 Score=66.89 Aligned_cols=95 Identities=21% Similarity=0.337 Sum_probs=58.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEE
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~---------~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i 71 (252)
|+++||||.|+|.+|+.+++.+.++. ++++++|.|.. ++.. .-++ .
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~--~~~~-~~~~----------------------~ 55 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD--LEKD-RGVD----------------------L 55 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC--hhhc-cCCC----------------------C
Confidence 77899999999999999998875432 58899998762 2210 0000 0
Q ss_pred CCeeEEEEeecCCCCCCCcccCccEEEecCCCC-CCHHhHHHHHhCCCCEEEEcCC
Q 025476 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 72 ~G~~i~v~~~~dp~~~~w~~~~vdiV~e~tg~f-~~~~~a~~h~~~GakkViis~p 126 (252)
.+ ..++ .|++++ ..+.++|+|+||||.. ...+.....+++|. .||..++
T Consensus 56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 00 0111 222222 1234789999999864 34577778898884 3444344
No 57
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.32 E-value=0.00045 Score=53.67 Aligned_cols=93 Identities=30% Similarity=0.476 Sum_probs=65.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcC-CCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~-~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
+||||+|+|.+|+.+++++... ++++++++.|+ +++...... ..+| - . .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~---~~~~-----------~-~---------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFA---EKYG-----------I-P---------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHH---HHTT-----------S-E---------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHH---HHhc-----------c-c---------ch--h
Confidence 5999999999999999999877 78999999998 444321111 0010 0 0 11 1
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
+.+++ +.+.++|+|+-||+.....+.+...+++|. .|++.-|
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP 94 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP 94 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence 22222 112378999999999988899999999998 6777766
No 58
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0013 Score=59.29 Aligned_cols=99 Identities=26% Similarity=0.281 Sum_probs=63.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||+|+| .||+||.+.+++.+.+++++++.-|...+. ..|+-- +.+ .-++-..+.++ .
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----------~~g~d~-ge~-------~g~~~~gv~v~--~ 61 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----------SLGSDA-GEL-------AGLGLLGVPVT--D 61 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----------ccccch-hhh-------ccccccCceee--c
Confidence 8999999 599999999999999999999887752100 011111 111 00111123332 2
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
++. -...+.|+++|-|-...+.+.++..++.|.+-||=|..
T Consensus 62 ~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 62 DLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred chh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCC
Confidence 221 12247899999999888999999999999654444443
No 59
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.27 E-value=0.00055 Score=61.31 Aligned_cols=87 Identities=24% Similarity=0.354 Sum_probs=58.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||+|+|+ |++|+.+++.+.+.++++++++.|.. .+..... + .. .+.+ ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~--~~~~~~~-------------------~-~~-----~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP--GSPLVGQ-------------------G-AL-----GVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--Ccccccc-------------------C-CC-----Cccc--cC
Confidence 69999997 99999999998877889999998872 2211000 0 00 0111 12
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
|.+.+- . ++|+|+|+|......+.+...+++|.. |++
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 333221 1 589999999877778889999999974 444
No 60
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.96 E-value=0.0012 Score=52.79 Aligned_cols=93 Identities=31% Similarity=0.355 Sum_probs=56.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||+|+|+ ||+|+.+.+.+.+.++++++++.|...+ ++ .|+-- +++ .+ .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~-~~----------~g~d~-g~~--~~-----~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS-AK----------VGKDV-GEL--AG-----IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS-TT----------TTSBC-HHH--CT-----SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc-cc----------ccchh-hhh--hC-----cCCcccccc--h
Confidence 59999998 9999999999999889999999887321 11 11111 110 00 001112221 3
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCE
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Gakk 120 (252)
+.+.+. ..+|+++|.|......+.++..++.|..-
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ 94 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVPL 94 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-EE
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCCE
Confidence 333221 13899999997766667888888888743
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.92 E-value=0.0014 Score=61.37 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=27.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~---------~~~ivaind~ 36 (252)
+++|+|.|||.||+.+++.+.++. ++++++|.+.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 499999999999999999885431 4778888764
No 62
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.88 E-value=0.0019 Score=60.13 Aligned_cols=33 Identities=36% Similarity=0.702 Sum_probs=28.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcC-------CCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~-------~~~~ivaind~ 36 (252)
|||+|.|||.||+.+++.+.++ .++++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4999999999999999998763 35889999885
No 63
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.84 E-value=0.0011 Score=61.68 Aligned_cols=107 Identities=28% Similarity=0.329 Sum_probs=59.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHcC--------C-CceEEEEeCCCCChhhhheeeeeecccccCCCcc-eEEcCCeeeEE
Q 025476 2 GKVKIGINGFGRIGRLVARVILQR--------D-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE-LKVKDDKTLLF 71 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~--------~-~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~-v~~~~~~~l~i 71 (252)
|+++|+|.|||.+|+.+++.+.++ + ++++++|.|.... .|+. .|-.. .. .+....
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~--------~~~~-~Gid~-~~l~~~~~~----- 65 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGT--------IWLP-EDIDL-REAKEVKEN----- 65 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCcc--------ccCC-CCCCh-HHHHHhhhc-----
Confidence 359999999999999999987652 1 3889999885211 0111 01000 00 000000
Q ss_pred CCeeEEEE---e--ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 72 GEKPVTVF---G--VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 72 ~G~~i~v~---~--~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.|..-.+. . ..++.++ +.+..+|+|+|+|+.....+.....++.|. -|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVtan 122 (336)
T PRK08374 66 FGKLSNWGNDYEVYNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTSN 122 (336)
T ss_pred cCchhhccccccccCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEECC
Confidence 00000010 0 0012111 233578999999998777777788888887 455543
No 64
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.70 E-value=0.005 Score=56.16 Aligned_cols=97 Identities=25% Similarity=0.313 Sum_probs=65.2
Q ss_pred CCcceEEEEcCChhHH-HHHHHHHcCCC-ceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEE
Q 025476 1 MGKVKIGINGFGRIGR-LVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (252)
Q Consensus 1 m~~~kv~InG~GrIGr-~v~r~~~~~~~-~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v 78 (252)
||++||||+|+|.++. .++.++.+.++ ++++++.|+ +++....+. ..||- . ..
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a---~~~~~----------------~----~~ 55 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFA---EEFGI----------------A----KA 55 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHH---HHcCC----------------C----cc
Confidence 6789999999996664 58888887776 799999998 454432221 11110 0 01
Q ss_pred EeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 79 ~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
+ .+.+++ ..+.++|+|+=||+.....+.+...+++|. -|++--|
T Consensus 56 ~--~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 56 Y--TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred c--CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 1 111111 011258999999999999999999999997 5777666
No 65
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0078 Score=56.14 Aligned_cols=36 Identities=33% Similarity=0.674 Sum_probs=30.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~---------~~~ivaind~ 36 (252)
||.+||+|.|||.+|+.++|.+.+++ ++++++|.+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 78899999999999999999987642 4777777765
No 66
>PRK10206 putative oxidoreductase; Provisional
Probab=96.49 E-value=0.0051 Score=57.27 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=60.6
Q ss_pred ceEEEEcCChhHH-HHHHHHHc-CCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 4 VKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 4 ~kv~InG~GrIGr-~v~r~~~~-~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
+|+||+|+|++++ .+++++.. .+++++++|.|+. .+.. ... ..|+ + ++++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~--~~~~-~~~---~~~~------------------~--~~~~-- 53 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH--AKPE-EQA---PIYS------------------H--IHFT-- 53 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC--hhHH-HHH---HhcC------------------C--Cccc--
Confidence 7999999999875 56776644 3579999999983 3211 111 0111 0 0111
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.|.+++ ..+.++|.|+-||+.....+.+...+++| |-|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 112211 11237899999999999999999999999 56787666
No 67
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.45 E-value=0.0098 Score=54.39 Aligned_cols=97 Identities=23% Similarity=0.172 Sum_probs=60.4
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
.+||.||| .|++|+.+.++..+ +++++|+..|+...-+.+ .+.+.|..++++..
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~------------------------~~~~~g~~v~~~~~ 65 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGV------------------------TVEVCGVEVRLVGP 65 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccc------------------------cceeccceeeeecC
Confidence 48999999 79999999999988 789999987763111110 12233445555422
Q ss_pred cCCCCCC--CcccCcc-EEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 82 RNPEEIP--WAETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 82 ~dp~~~~--w~~~~vd-iV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
.|.+..- -....+| +++|-|-.....+..+..++.|.+-|+=|
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGT 111 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGT 111 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 2222110 0011467 78887777667777777888887544333
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.20 E-value=0.0043 Score=58.90 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=64.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCC-CceEEEEe-CCCCChhhhheeeeeecccccCCCcceEEcCCe---ee--EECCee
Q 025476 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVN-DPFITTDYMTYMFKYDSVHGQWKHHELKVKDDK---TL--LFGEKP 75 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~-~~~ivain-d~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~---~l--~i~G~~ 75 (252)
.||+|.| +|-||+..++.+...+ .|+++++. +. +.+.+..+.+ .|++ .-+-..+++ .| .+.+..
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~--n~~~l~~q~~---~f~p---~~v~i~~~~~~~~l~~~l~~~~ 73 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK--NVELLAEQAR---EFRP---KYVVVADEEAAKELKEALAAAG 73 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC--CHHHHHHHHH---HhCC---CEEEEcCHHHHHHHHHhhccCC
Confidence 4999999 9999999999887655 69999997 33 4544433332 1111 001111100 00 011212
Q ss_pred EEEEeecC-CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 76 VTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 76 i~v~~~~d-p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
++++...+ ..++ -...++|+|+.+.+.+...+..-..+++| |+|.+
T Consensus 74 ~~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 74 IEVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred ceEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 33332221 1111 01126999999999998888888889999 55655
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.16 E-value=0.0013 Score=51.44 Aligned_cols=86 Identities=26% Similarity=0.319 Sum_probs=49.9
Q ss_pred cCChhHHHHHHHHHcCC---CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCCCC
Q 025476 10 GFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEE 86 (252)
Q Consensus 10 G~GrIGr~v~r~~~~~~---~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp~~ 86 (252)
|+|.||+.+++.+.+.. ++++++|.+.. .++..+... ..++ .... .+.++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-------~~~~~~~~~---------~~~~-~~~~----------~~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-------MLISKDWAA---------SFPD-EAFT----------TDLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-------EEEETTHHH---------HHTH-SCEE----------SSHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-------chhhhhhhh---------hccc-cccc----------CCHHH
Confidence 89999999999998765 69999998862 111111000 0001 0001 11211
Q ss_pred -CCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 87 -IPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 87 -~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
+.| ..+|+|+|||+.....+..+..+++|. -||++.
T Consensus 54 ~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~n 90 (117)
T PF03447_consen 54 LIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTAN 90 (117)
T ss_dssp HHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES-
T ss_pred HhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEEC
Confidence 111 168999999998777788889999998 566554
No 70
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.11 E-value=0.061 Score=47.48 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=31.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|+.++|+|.|||.+|+.+++.+.+.+ .++++|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g-~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAG-AKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence 35689999999999999999988775 999999986
No 71
>PLN02700 homoserine dehydrogenase family protein
Probab=96.03 E-value=0.0088 Score=56.75 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=29.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC--------CceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~--------~~~ivaind~ 36 (252)
||.++|+|.|+|.||+.+++.+.++. ++.+++|.|.
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 88899999999999999999875321 3778888775
No 72
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.96 E-value=0.028 Score=49.33 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=50.2
Q ss_pred CccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCC-CCCeEEeecCccccCC--CCCeEEcCCchhhhHHHHHHHHHh
Q 025476 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAPLAKVIHD 168 (252)
Q Consensus 93 ~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~-d~p~vV~gVN~~~~~~--~~~IIS~asCtT~~Lap~lk~L~~ 168 (252)
++|+|||+|........+.+..++|.+- |+-..+ =-|-+|+-+|.++... +-..|++..-.| .|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~--idltpaaigp~vvp~~n~~eh~~a~nvnmvtcggqat---ipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRL--IDLTPAAIGPYVVPVVNLEEHVDALNVNMVTCGGQAT---IPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCce--eecchhccCCeeccccchHHhcCCCCcceEeecCccc---chhhhhhhh
Confidence 6889999999999999999999999954 543322 2689999999877643 345565554444 455544443
No 73
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.88 E-value=0.011 Score=55.43 Aligned_cols=93 Identities=20% Similarity=0.359 Sum_probs=55.2
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeee--EE-CCeeEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTL--LF-GEKPVTVF 79 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l--~i-~G~~i~v~ 79 (252)
.+|||++|.|.+|+-++-.....+++++|+|.|...+-...+ ||..++.-. ..++..+-+++ -+ .| ++.+.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~-~~~e~~~~s~~a~Ai~aG-Ki~vT 90 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKI-EAVEADDASKMADAIEAG-KIAVT 90 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcc-cccccchhhHHHHHHhcC-cEEEe
Confidence 489999999999997777666778899999999865544433 465555432 22222110000 01 12 23332
Q ss_pred eecCCCCCCCcccCccEEEecCCCC
Q 025476 80 GVRNPEEIPWAETGAEYVVESTGVF 104 (252)
Q Consensus 80 ~~~dp~~~~w~~~~vdiV~e~tg~f 104 (252)
.|.+ +-.....+|.++|+||.-
T Consensus 91 --~D~~-~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 91 --DDAE-LIIANDLIDVIIDATGVP 112 (438)
T ss_pred --cchh-hhhcCCcceEEEEcCCCc
Confidence 2222 223334799999999953
No 74
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.84 E-value=0.075 Score=46.65 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=31.1
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~ 37 (252)
+..+|+|-|||.+|+.+++.+.+.+ ..+|++.|..
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G-~~vV~vsD~~ 56 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG-GKVLAVSDPD 56 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEEcCC
Confidence 4579999999999999999998875 8899999974
No 75
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.74 E-value=0.046 Score=52.09 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=61.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+||-|+|.|.||+.+++.+..+++.+|...+ . +.+..+... +++.++.. .+.++- .|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAd-R--s~~~~~~i~--~~~~~~v~----------~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIAD-R--SKEKCARIA--ELIGGKVE----------ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEe-C--CHHHHHHHH--hhccccce----------eEEecc--------cC
Confidence 5999999999999999999888777765444 3 344443333 22111111 222221 11
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.+.+.=--.+.|+|+.|.+.|....-+++.++.|. -.++.+
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCC--CEEEcc
Confidence 11000000145999999999999999999999999 445544
No 76
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.73 E-value=0.046 Score=53.01 Aligned_cols=100 Identities=15% Similarity=0.281 Sum_probs=60.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CChhhhheeeeeeccc-ccCCCcceEEcCCeeeEECC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE 73 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~--------~~~~~~ayll~ydS~~-G~~~~~~v~~~~~~~l~i~G 73 (252)
..+|+|-|||.+|+.+++.+.+.+ .++|+|.|.. +|++.+ ++|-..+ |... + +.+. . |
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~-~---~~~~----~-~ 298 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRIS-E---YAEE----F-G 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchh-h---hhhh----c-C
Confidence 479999999999999999998876 9999998832 133332 2221111 1111 0 0000 0 1
Q ss_pred eeEEEEeecCCCCCCCcccCccEEEecCC-CCCCHHhHHHHHhCCCCEEEE
Q 025476 74 KPVTVFGVRNPEEIPWAETGAEYVVESTG-VFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 74 ~~i~v~~~~dp~~~~w~~~~vdiV~e~tg-~f~~~~~a~~h~~~GakkVii 123 (252)
... -+++. .| +..+|+.+.|+- ..++.+.+..+.+.+|| +|+
T Consensus 299 --~~~---i~~~~-i~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 299 --AEY---LEGGS-PW-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred --Cee---cCCcc-cc-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 001 12232 24 357999999975 55577888888777784 445
No 77
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.41 E-value=0.035 Score=48.22 Aligned_cols=95 Identities=21% Similarity=0.356 Sum_probs=60.9
Q ss_pred cceEEEEcCChhHHHHHHHH-HcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGINGFGRIGRLVARVI-LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~-~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
..+++|+|+|.+|+.+++.+ +...+++++++-|. +++.. | . . ++|.++ ...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~-----------~-~--i~g~~v--~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------G-----------T-K--IGGIPV--YHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------C-----------C-E--eCCeEE--cCH
Confidence 36899999999999998864 33446999998876 22211 0 0 1 123222 111
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.+..++ ..+.++|.|+.|++.....+.....+++|.+.++...|
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 222222 12347999999999877667677788899887766555
No 78
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.029 Score=49.39 Aligned_cols=99 Identities=27% Similarity=0.308 Sum_probs=58.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeee--eecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~--ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
|++.|+|.|++|+.+++.|.+.+ .+++.|.+ +.+.....++ +|. . .+.-++..-.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~--------------~-~v~gd~t~~~~L~- 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT--------------H-VVIGDATDEDVLE- 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce--------------E-EEEecCCCHHHHH-
Confidence 48999999999999999998886 67777765 3443322221 111 0 1111221112211
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHH-hHHHHHh-CCCCEEEEcCCCC
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKD-KAAAHLK-GGAKKVIISAPSK 128 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~-~a~~h~~-~GakkViis~ps~ 128 (252)
+..- .++|+++-+||.....- .+..+++ .|.+++|..+.++
T Consensus 61 ----~agi--~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 61 ----EAGI--DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred ----hcCC--CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 2211 26899999999865443 2333444 6999988876654
No 79
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.27 E-value=0.03 Score=48.37 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=64.5
Q ss_pred ceEEEEcCChhHHHHHHHHHc-CCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~-~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
.++.|+|.|.+|+.++.--+. +.+++++++=|. +++.+ |+.- .+ ++|..-.
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V----------G~~~--------------~~--v~V~~~d 136 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV----------GTKI--------------GD--VPVYDLD 136 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh----------Cccc--------------CC--eeeechH
Confidence 589999999999988765543 557999999886 44422 2222 22 3342222
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
+.+++ -.+.++|+++-|.+.....+-+..-.++|.|.++=.+|
T Consensus 137 ~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 137 DLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 22221 12348999999999888888888999999998665666
No 80
>PLN02477 glutamate dehydrogenase
Probab=95.13 E-value=0.18 Score=48.48 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~ 37 (252)
..+|+|-|||.+|+.+++.+.+.+ .++|+|.|..
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~~ 239 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDIT 239 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEECCC
Confidence 369999999999999999998776 9999999974
No 81
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.00 E-value=0.059 Score=48.25 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=56.8
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC----------CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeee-EE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD----------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTL-LF 71 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~----------~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l-~i 71 (252)
..||.|+|.|-+|..+++++...+ +++++.+..-.++...+-.-+-+++.-|+.+ .++- .. .+ .+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~-~~--ri~~~ 86 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVL-VN--RLNQA 86 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHH-HH--HHHhc
Confidence 479999999999999999986532 2466555433333333333332345566655 2221 11 11 12
Q ss_pred CCeeEEEEeec-CCCCCCCcccCccEEEecCCCCCCHHhHH
Q 025476 72 GEKPVTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA 111 (252)
Q Consensus 72 ~G~~i~v~~~~-dp~~~~w~~~~vdiV~e~tg~f~~~~~a~ 111 (252)
+|-.+....++ +++++ + .+.|+|++|+..+.++...-
T Consensus 87 ~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~ 124 (244)
T TIGR03736 87 MGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAIL 124 (244)
T ss_pred cCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHH
Confidence 24333333221 22222 2 37899999999887775543
No 82
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.66 E-value=0.066 Score=48.77 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=53.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEE-eCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivai-nd~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
+||.||| .|++|+.+.++..+ ++++||+. -|+...- .+ ...+.|..+++...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~------------------------~~-~~~~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEA------------------------EN-EAEVAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccc------------------------cc-hhhhcccceeeecc
Confidence 5899999 79999999999877 67999986 3321000 01 11233334444211
Q ss_pred ----cCCCCCCCcccCcc-EEEecCCCCCCHHhHHHHHhCCCCE
Q 025476 82 ----RNPEEIPWAETGAE-YVVESTGVFTDKDKAAAHLKGGAKK 120 (252)
Q Consensus 82 ----~dp~~~~w~~~~vd-iV~e~tg~f~~~~~a~~h~~~Gakk 120 (252)
.+++.+. +...| +++|-|-.....+.+...++.|..-
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ 96 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPF 96 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCE
Confidence 1222211 11256 7788777766777777777777743
No 83
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.30 E-value=0.067 Score=45.07 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.+|||+|+|+||+.+++.+...+ +++++.+-.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecCC-ceeEEeccc
Confidence 58999999999999999998776 787766643
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.24 E-value=0.28 Score=44.57 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=77.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeee-----e--cccccCCCcceEEcCCeeeEECCeeE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-----D--SVHGQWKHHELKVKDDKTLLFGEKPV 76 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~y-----d--S~~G~~~~~~v~~~~~~~l~i~G~~i 76 (252)
-||||+|.|.+|+.++..+...+ ++++.. |. +++.+....++ | -..|... .++. .-.. ..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~-----~~~~-~~~~--~~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG-VDVLVF-ET--TEELATAGRNRIEKSLERAVSRGKLT-----ERER-DAAL--ARL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC-CEEEEE-EC--CHHHHHHHHHHHHHHHHHHHhcccCC-----hhhH-HHHH--hCe
Confidence 38999999999999998877665 775444 44 44444321110 0 0012111 0000 0000 123
Q ss_pred EEEeecCCCCCCCcccCccEEEecCCCCCCHHhH-----HHHH-hCCCCEEEEcCCCC----------CCCeEEee---c
Q 025476 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-----AAHL-KGGAKKVIISAPSK----------DAPMFVVG---V 137 (252)
Q Consensus 77 ~v~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a-----~~h~-~~GakkViis~ps~----------d~p~vV~g---V 137 (252)
++ ..+++.+ .++|+|+||.......++. +.+. +.++ ++.|++|. ..|--+.| .
T Consensus 74 ~~--~~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 74 RF--TTDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred Ee--eCCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 33 2344433 3899999998765443322 3344 4555 88887752 12322222 3
Q ss_pred CccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCe
Q 025476 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172 (252)
Q Consensus 138 N~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI 172 (252)
|+-.+.+--.|+..+.+.-..+..+...+.+..|-
T Consensus 146 ~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 146 NPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 32222222346666677677777666666655553
No 85
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.96 E-value=0.21 Score=43.08 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=27.1
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.++++|.|+|++|+.+++.+.+.+ .+++ +.|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 368999999999999999998876 7877 5555
No 86
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.93 E-value=0.056 Score=40.99 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=58.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEE-ee
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF-GV 81 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~-~~ 81 (252)
+-|+.|.|.|+.|+.++...+...+++++++-|. +++.. .-.++| ++++ ..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~------------------------G~~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI------------------------GKEIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT------------------------TSEETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc------------------------CcEECC--EEeeccH
Confidence 4589999999999988765655556888888665 22211 112333 3444 11
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
++..+. - ++|+.+-|.+.....+.+...+++|.|.++.-+|
T Consensus 55 ~~l~~~--~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEF--I--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHH--C--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhh--h--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111 1 3899999998777778888899999999876544
No 87
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.88 E-value=0.092 Score=43.49 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=23.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|||++|+|.+|+.+++++.+.+ +++.+-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG-YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT-TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC-CeEEeec
Confidence 59999999999999999998776 7765543
No 88
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.72 E-value=0.1 Score=55.55 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=62.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCce------------EEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~------------ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i 71 (252)
.||+|+|.|+||+.+++.+.+.++++ +|+|.|+ +++....+.+ .++ +
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~--------~----- 628 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIE--------N----- 628 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHH------hcC--------C-----
Confidence 59999999999999999998777666 7888887 3443322221 000 0
Q ss_pred CCeeEEEEeecCCCCCC-CcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 72 GEKPVTVFGVRNPEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 72 ~G~~i~v~~~~dp~~~~-w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
-+.+.+= ..|++++. +- .++|+|+-|++.+...+-+...+++|. -+++..
T Consensus 629 -~~~v~lD-v~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGk--Hvv~ek 679 (1042)
T PLN02819 629 -AEAVQLD-VSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKK--HLVTAS 679 (1042)
T ss_pred -CceEEee-cCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCC--CEEECc
Confidence 0111120 02332221 10 268999999999999999999999997 445443
No 89
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.47 E-value=0.35 Score=43.63 Aligned_cols=104 Identities=16% Similarity=0.281 Sum_probs=60.8
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CChhhhheeeeeeccccc-CCCcceEEcCCeeeEECC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~--------~~~~~~ayll~ydS~~G~-~~~~~v~~~~~~~l~i~G 73 (252)
..+|+|-|||.+|+.+++.+.+.+ .++|+|.|.. +|++.+..+++++..++. .. .+.. .+.|
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~----~~~~----~~~~ 108 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELG-AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS----EYAK----KYGT 108 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH----HHhh----cCCC
Confidence 369999999999999999998876 9999999843 233344333433322211 00 0000 0111
Q ss_pred eeEEEEeecCCCCCCCcccCccEEEecC-CCCCCHHhHHHHHhCCCCEEEE
Q 025476 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 74 ~~i~v~~~~dp~~~~w~~~~vdiV~e~t-g~f~~~~~a~~h~~~GakkVii 123 (252)
-+. -+++++ | +..+|+.+=|+ +.-++.+.++.-.+.+|| +|+
T Consensus 109 --a~~---~~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 109 --AKY---FEGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred --CEE---eCCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 011 123332 5 35789888774 456677777766666774 445
No 90
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.40 E-value=0.08 Score=54.99 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~---------~~~ivaind~ 36 (252)
|+.++|+|.|||.+|+.+++.+.++. ++++++|.+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 35689999999999999999885431 4778888764
No 91
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.94 E-value=0.1 Score=41.98 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCChhhhheeeee
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKY 49 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivaind~~~~~~~~ayll~y 49 (252)
||.|+|.|.+|..+++.+...+ + +++-+++-..+++.+..-+-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~v~~~nl~r~~~~ 45 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDTVELSNLNRQFLA 45 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCCcCcchhhccccC
Confidence 6899999999999999998766 4 344443333344444444433
No 92
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.85 E-value=0.11 Score=54.16 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=27.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCC--------CceEEEEeCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~--------~~~ivaind~ 36 (252)
+.++|+|.|||.||+.+++.+.++. ++++++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 4589999999999999999885432 4778888664
No 93
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.77 E-value=0.57 Score=43.31 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=24.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
..||+|+|.|.+|..++..+...+-.+ +.+-|.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 479999999999999888776555234 445454
No 94
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.73 E-value=0.49 Score=46.07 Aligned_cols=101 Identities=16% Similarity=0.324 Sum_probs=62.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CChhhhheeeeeeccc-ccCCCcceEEcCCeeeEECCe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEK 74 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~--------~~~~~~ayll~ydS~~-G~~~~~~v~~~~~~~l~i~G~ 74 (252)
.+|+|-|||.+|...++.+.+.+ .++|++.|.. +|.+.+.++++|-..+ |... . +.+. ..|
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~G-akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~---~~~~----~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLG-AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-E---YAKH----SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-h---hhhc----cCC-
Confidence 69999999999999999998876 9999999985 2344444444322111 1111 0 0000 001
Q ss_pred eEEEEeecCCCCCCCcccCccEEEecC-CCCCCHHhHHHHHhCCCCE
Q 025476 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKK 120 (252)
Q Consensus 75 ~i~v~~~~dp~~~~w~~~~vdiV~e~t-g~f~~~~~a~~h~~~Gakk 120 (252)
.+.. ++++ .|. ..+|+.+=|+ +.-++.+.+..-++.|||-
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 0111 1222 375 6899998774 5666778888777889963
No 95
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.94 E-value=0.3 Score=45.23 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=24.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.||+|+|.|.+|..++..+...+-.+ +.+-|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 58999999999999988776555235 556665
No 96
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=91.94 E-value=0.13 Score=48.32 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=56.9
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
.+||||+|. .+|+.+++++.+.+ ++++++|.|. +.+....+. ..||- ..+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A---~~~gi---------------------~~y-- 53 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALA---HRLGV---------------------PLY-- 53 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHH---HHhCC---------------------Ccc--
Confidence 479999999 67999999998777 7999999998 444322111 11110 011
Q ss_pred cCCCCCCCcccCccEEEec--CCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 82 RNPEEIPWAETGAEYVVES--TGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~--tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.+.+++. .+.++|.|.=. +......+.+...+++|. .|++=-|
T Consensus 54 ~~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKP 98 (343)
T TIGR01761 54 CEVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHP 98 (343)
T ss_pred CCHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCC
Confidence 1222221 11244544432 234566788899999984 6777555
No 97
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.93 E-value=0.11 Score=48.63 Aligned_cols=97 Identities=27% Similarity=0.408 Sum_probs=54.5
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCCC
Q 025476 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (252)
Q Consensus 6 v~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp~ 85 (252)
|.|.|.|.+|+.+++.+.+++.++-+.+.|. +.+.+..+.+. . .+. .+. .+.+ ...|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~-----------~--~~~-~~~----~~~~-d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEK-----------L--LGD-RVE----AVQV-DVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT---------------TTT-TEE----EEE---TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhh-----------c--ccc-cee----EEEE-ecCCHH
Confidence 6899999999999999998887734455554 45544333310 0 001 110 0011 012222
Q ss_pred CCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcC
Q 025476 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (252)
Q Consensus 86 ~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ 125 (252)
.+.=--.+.|+|+.|+|.|....-++..+++|+ -.++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 111001267999999999988888889999999 56763
No 98
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.88 E-value=0.27 Score=42.88 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=26.9
Q ss_pred CC-cceEEEEcCChhHHHHHHHHHcCC--Cce-EEEEeC
Q 025476 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVE-LVAVND 35 (252)
Q Consensus 1 m~-~~kv~InG~GrIGr~v~r~~~~~~--~~~-ivaind 35 (252)
|| .+||+|+|.|++|+.+++.+...+ .++ ++..++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 66 689999999999999999887654 344 545554
No 99
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.84 E-value=0.21 Score=45.98 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=24.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+...+ +++++.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcC-CEEEEEC
Confidence 58999999999999999886665 7765553
No 100
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=91.68 E-value=0.79 Score=44.59 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=62.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhheeee-eecccccCCCcceEEcCCe---ee--EECCe-
Q 025476 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TL--LFGEK- 74 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayll~-ydS~~G~~~~~~v~~~~~~---~l--~i~G~- 74 (252)
.||+|.| +|-||...++.+.+.+ +|+++++..- .+.+.++...+ |... -+-..+.+ .| .+.|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~~f~p~-------~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVRKFKPK-------LVAVRNESLVDELKEALADLD 129 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCCC-------EEEEcCHHHHHHHHHhhcCCC
Confidence 5999999 6999999999887665 5999988653 35555544221 1110 01111100 00 00110
Q ss_pred -eEEEEe-ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 75 -PVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 75 -~i~v~~-~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
.+.++. +.+..++- ...++|+|+.+.+.+....-.-.++++| |+|.+.
T Consensus 130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALA 179 (454)
T PLN02696 130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 179 (454)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEe
Confidence 123332 11111110 1126899999999887777667788888 566554
No 101
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.65 E-value=0.94 Score=39.31 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||+|+| .|++|..+++-+..|+ -++++|..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEe
Confidence 5999999 7999999999999997 88888864
No 102
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.55 E-value=0.26 Score=45.56 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+...+ +++++.+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fg-m~V~~~~ 178 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQ 178 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence 58999999999999999887665 7766554
No 103
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.33 E-value=0.64 Score=42.22 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=26.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||.|.| .|.||+.+++.+.+++ .+++++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 3899999 8999999999998876 78877764
No 104
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.30 E-value=0.74 Score=41.85 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=23.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+||+|+|.|.+|..++..+...+-.+++- .|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L-~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVL-FDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE-EEC
Confidence 59999999999999988777655225444 444
No 105
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.24 E-value=0.29 Score=44.11 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=26.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|| +||+|+|+|.+|..+++.+...+ +++++. |+
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~g-~~v~~~-d~ 33 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKAG-YSLVVY-DR 33 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHCC-CeEEEE-cC
Confidence 55 79999999999999999887665 776544 44
No 106
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.10 E-value=1.1 Score=41.40 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.||+|+|.|.+|..++-.+...+-+.-+.+-|
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D 38 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIID 38 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 79999999999999998887776443233334
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.98 E-value=0.3 Score=45.48 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=24.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
..|||+|+|+||+.+++.+...+ +++++.+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEC
Confidence 58999999999999999887766 7765543
No 108
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.91 E-value=0.3 Score=45.06 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.+|||+|+|+||+.+++.+...+ +++++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg-~~V~~~ 176 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALG-MKVLYA 176 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEE
Confidence 58999999999999999886655 776554
No 109
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=90.90 E-value=0.81 Score=36.01 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=54.0
Q ss_pred eEEEEc----CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 5 KIGING----FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 5 kv~InG----~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
+|+|+| -+..|+.+++.+.+.+ +++++||-- ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~------------~~~-------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK------------GGE-------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT------------CSE-------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC------------ceE-------------------ECcEE--ee-
Confidence 689999 5899999999998865 888888743 111 22222 21
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
.+.+++| ..+|+++-+++.....+..+...+.|+|.+++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1222221 36899999999888888888888899999988544
No 110
>PRK14031 glutamate dehydrogenase; Provisional
Probab=90.82 E-value=0.76 Score=44.67 Aligned_cols=104 Identities=13% Similarity=0.307 Sum_probs=59.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CChhhhheeeeeecccccCCCcceEEcCCeeeEECCee
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 75 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~--------~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~ 75 (252)
.+|+|-|||.+|...++.+.+.+ .++++|+|.. ++++.+.|+.+|... .. +.+....+ . . |
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~G-AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~---~~-~~v~~~~~-~--~-g-- 297 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELG-GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNL---YR-GRIREYAE-K--Y-G-- 297 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhh---cC-CchhhhHh-h--c-C--
Confidence 69999999999999999998876 9999999932 134444333222110 00 11100000 0 0 1
Q ss_pred EEEEeecCCCCCCCcccCccEEEecCC-CCCCHHhHHHHHhCCCCEEEEc
Q 025476 76 VTVFGVRNPEEIPWAETGAEYVVESTG-VFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 76 i~v~~~~dp~~~~w~~~~vdiV~e~tg-~f~~~~~a~~h~~~GakkViis 124 (252)
.... ++++ .|. ..+|+.+=|+- .-++.+.++.-...|++ +|+.
T Consensus 298 a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 298 CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 1111 2222 353 57899887754 55677888776666773 3443
No 111
>PRK08507 prephenate dehydrogenase; Validated
Probab=90.75 E-value=0.6 Score=41.80 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=23.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCC-ceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDD-VELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~-~~ivai 33 (252)
|||+|+|+|.+|..+++.+.+.+. .++++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~ 31 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGY 31 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEE
Confidence 389999999999999999987652 344443
No 112
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.72 E-value=0.22 Score=40.20 Aligned_cols=32 Identities=41% Similarity=0.638 Sum_probs=27.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+||+|+|.|++|..+.+++.+.+ ++++.+...
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~sr 42 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAG-HEVVGVYSR 42 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTT-SEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeC
Confidence 79999999999999999998776 888888655
No 113
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.60 E-value=0.58 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=19.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
+||+|+|.|.||..++..+...+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 49999999999999988885554
No 114
>PRK07574 formate dehydrogenase; Provisional
Probab=90.55 E-value=0.37 Score=45.93 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=24.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+...+ +++.+.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 68999999999999999987665 7765554
No 115
>PLN02928 oxidoreductase family protein
Probab=90.49 E-value=0.35 Score=45.35 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=25.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++||+|+|+||+.+++.+...+ +++++.+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~d 189 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG-VKLLATR 189 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence 58999999999999999997776 7877664
No 116
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.41 E-value=0.48 Score=35.11 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCC--CceEEEEeCCCCChhhhhee
Q 025476 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYM 46 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~--~~~ivaind~~~~~~~~ayl 46 (252)
||||+|+|.+|..+++.+.+.+ ..++..+++. +++...++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~ 42 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAEL 42 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHH
Confidence 7999999999999999998765 2555545454 45555444
No 117
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.39 E-value=0.38 Score=39.12 Aligned_cols=80 Identities=24% Similarity=0.257 Sum_probs=45.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|||+|+|. |.+|..++-.+...+-..-+.+-|.. .+ .+.=...|-.|..+. .+..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~--~~-~~~g~a~Dl~~~~~~--------------~~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN--ED-KAEGEALDLSHASAP--------------LPSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS--HH-HHHHHHHHHHHHHHG--------------STEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC--cc-cceeeehhhhhhhhh--------------ccccccccc-c
Confidence 59999998 99999999888776633323344431 11 111111122222111 122334433 5
Q ss_pred CCCCCCCcccCccEEEecCCCCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFT 105 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~ 105 (252)
+.+.+. +.|+|+-++|.-.
T Consensus 63 ~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SGGGGT----TESEEEETTSTSS
T ss_pred cccccc----cccEEEEeccccc
Confidence 555553 8999999998643
No 118
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.26 E-value=0.29 Score=42.13 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=53.4
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 6 IGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 6 v~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
|.|.| +|.+|+.++++|... ++++.++.... ....+.-|+. .+- .++. . ...|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~~--~~~~~~~l~~--------------~g~-~vv~------~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRDP--SSDRAQQLQA--------------LGA-EVVE------A-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESSS--HHHHHHHHHH--------------TTT-EEEE------S--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEecc--chhhhhhhhc--------------ccc-eEee------c-ccCCH
Confidence 68999 799999999999884 58888876541 1111111110 111 1100 0 00122
Q ss_pred CCCCCcccCccEEEecCCCCCCH------HhHHHHHhCCCCEEEEcC
Q 025476 85 EEIPWAETGAEYVVESTGVFTDK------DKAAAHLKGGAKKVIISA 125 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~------~~a~~h~~~GakkViis~ 125 (252)
+.+.=.-.|+|.||.+++..... ....+..++|.|++|.|.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 22210012899999999965222 234567778999988754
No 119
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.09 E-value=0.29 Score=43.43 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
|| +||+|+|+|.+|..+++.+.+.+
T Consensus 1 ~m-m~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 1 MM-KKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CC-CEEEEEechHHHHHHHHHHHhCC
Confidence 56 79999999999999999887654
No 120
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.08 E-value=0.4 Score=44.69 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=23.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++||+|+||||+.++|.+...+ +++..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fg-m~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFG-MKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999887444 6654443
No 121
>PLN00016 RNA-binding protein; Provisional
Probab=89.96 E-value=1 Score=42.03 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=27.2
Q ss_pred ceEEEE----c-CChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGIN----G-FGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~In----G-~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+||.|. | +|.||+.+++.|.+.+ .+++++...
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 689999 8 8999999999998876 787777643
No 122
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.91 E-value=0.5 Score=43.99 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
++|||+|+|+||+.+++.+...+ +++++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence 68999999999999999887665 7765553
No 123
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.91 E-value=0.41 Score=45.86 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+...+ +++++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999987766 7876664
No 124
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.89 E-value=0.43 Score=43.96 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+|||+|+|+||+.+++.+...+ +++++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG-~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFG-MNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEECC
Confidence 58999999999999999776554 77766653
No 125
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.76 E-value=0.43 Score=44.38 Aligned_cols=29 Identities=41% Similarity=0.584 Sum_probs=24.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.+|||+|+|+||+.+++.+...+ +++.+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~ 179 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG-MRILYY 179 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999987665 776544
No 126
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.67 E-value=0.59 Score=43.59 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=51.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEEC-CeeEEEEeecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~-G~~i~v~~~~d 83 (252)
+|.|.|.|.||.+.+..+...+--+++++ |. +.+-+...-++. +. ...++ ++.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~--------------g~-~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAG--------------GA-DVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhC--------------CC-eEeecCccccHH---HH
Confidence 68999999999988777766665566555 54 344332222211 01 11121 111000 00
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
...+..+ .++|.||||+|...+.+.+-..++.|-+=+++.-+
T Consensus 230 ~~~~t~g-~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 230 ILELTGG-RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHhCC-CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 0011111 37999999999655556666665554433334333
No 127
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.55 E-value=0.43 Score=47.02 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhh
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ 43 (252)
-||||+|.|.+|..+++.+...+ ++++.. |. +.+.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~-D~--~~e~l 43 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLY-DA--RAGAA 43 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEE-eC--CHHHH
Confidence 47999999999999999887665 776544 44 44444
No 128
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.53 E-value=0.5 Score=43.34 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=26.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|| +||+|+|.|.+|..++..+.+.+ .++..++
T Consensus 1 ~~-mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~ 32 (341)
T PRK08229 1 MM-ARICVLGAGSIGCYLGGRLAAAG-ADVTLIG 32 (341)
T ss_pred CC-ceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence 56 79999999999999999998775 5655554
No 129
>PLN02256 arogenate dehydrogenase
Probab=89.52 E-value=0.58 Score=43.09 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=27.1
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+.++|+|+|+|.+|..+++.+.+.+ .++++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~ 67 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSR 67 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 4579999999999999999887665 67776654
No 130
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.41 E-value=0.49 Score=43.94 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.0
Q ss_pred ceEEEEcCChhHHHHHHHHH-cCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~-~~~~~~ivaind~ 36 (252)
.++||+|+|+||+.+++.+. ..+ +++++ .|+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fg-m~V~~-~~~ 177 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFN-MPILY-NAR 177 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCC-CEEEE-ECC
Confidence 58999999999999999875 554 66553 444
No 131
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.17 E-value=1.1 Score=39.24 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=53.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
|+++|.|+|.||..+.+.+...+ .|++-.+.- +++..+-+.+| .+. . +.-. ..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r--~~~~~~a~a~~--------------l~~-~-------i~~~--~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR--GPKALAAAAAA--------------LGP-L-------ITGG--SN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecCC--ChhHHHHHHHh--------------hcc-c-------cccC--Ch
Confidence 59999999999999999887765 676555432 34333332221 011 1 1111 11
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHh-CCCCEEEEcCCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSK 128 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~-~GakkViis~ps~ 128 (252)
++-. .+.|+||-+.+-.--.+-.+.+.. -| .|+|||...+
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCCC
Confidence 2212 257999998875544444444443 23 5699976543
No 132
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.15 E-value=2.6 Score=38.51 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=24.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|+.|||+|+|.|.||..+...+.+.+ .++..+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~ 34 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-FDVHFL 34 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence 44689999999999999998887665 444433
No 133
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.93 E-value=0.58 Score=43.21 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|.||+.+++.+...+ +++.+.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999988665 7765554
No 134
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.77 E-value=2 Score=41.80 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=56.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+||.|.|+|+-|+..+|.+.+.+ .++++..+- ..++.. . .. .+.. ..|.+...+.
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~-~~~~~~--~-------------~~------~~~~--~~i~~~~g~~ 62 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDR-PAPEGL--A-------------AQ------PLLL--EGIEVELGSH 62 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCC-CeEEEEcCC-CCccch--h-------------hh------hhhc--cCceeecCcc
Confidence 69999999999999999998887 665444422 111000 0 00 0000 0122222223
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Gak 119 (252)
+. .+|. +.|+|+-+-|...+....+...+.|++
T Consensus 63 ~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 63 DD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 33 4565 789999999999988888888889984
No 135
>PRK14030 glutamate dehydrogenase; Provisional
Probab=88.70 E-value=2.1 Score=41.62 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=62.9
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CChhhhheeeeeecccccCCCcceEEcCCeeeEECCe
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~--------~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~ 74 (252)
..+|+|-|||.+|...++.+.+.+ .++|+|+|.. +|.+.+.+|++|-..+|..- .. ... .+.|-
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G-akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga 299 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG-AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC
Confidence 369999999999999999998776 9999986653 24444555555433222100 00 000 12121
Q ss_pred eEEEEeecCCCCCCCcccCccEEEec-CCCCCCHHhHHHHHhCCCCEEEE
Q 025476 75 PVTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 75 ~i~v~~~~dp~~~~w~~~~vdiV~e~-tg~f~~~~~a~~h~~~GakkVii 123 (252)
+ .+ ++++ .|. ..+|+.+=| ++.-++.+.++.-.+.+||- |+
T Consensus 300 ~-~i----~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~-V~ 341 (445)
T PRK14030 300 T-FF----AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVLC-VA 341 (445)
T ss_pred E-Ec----CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCeE-EE
Confidence 1 11 2233 253 578988876 45667888888877778853 44
No 136
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.48 E-value=0.63 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.+|||+|+|+||+.+++++...+ +++++.+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence 58999999999999999998876 887766654
No 137
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.30 E-value=0.44 Score=41.52 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=23.9
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
..+|.|+|.|-+|..+++.+...+ +. ++-+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD 59 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG-VGNLKLVD 59 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 368999999999999999997665 44 43343
No 138
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=88.30 E-value=1.9 Score=39.10 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=89.6
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~ 81 (252)
..|||..| -|-.|+.+.+.+...|.+|+..+..-. ++- --++ +-|+ .++..+ .|..
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssre--l~G--qkl~-~ytk-----~eiqy~---~lst---------- 75 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRE--LAG--QKLE-VYTK-----LEIQYA---DLST---------- 75 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhh--hcC--Cccc-Ccch-----hheeec---ccch----------
Confidence 37999999 699999999999899999987775431 100 0011 1000 011111 1111
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCC---CC--eEEee---cCccccCCCCCeEEcCC
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD---AP--MFVVG---VNENEYKPELNIVSNAS 153 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d---~p--~vV~g---VN~~~~~~~~~IIS~as 153 (252)
.|...+. ...-+|..+.+-+--.-+.....--.+--|-++|+-+ +| .| -.+|| .|+.+--...+.|+||.
T Consensus 76 ~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidls-ad~rf~p~~~w~YGLpElndRe~i~na~~iaNPG 153 (340)
T KOG4354|consen 76 VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLS-ADWRFQPHKEWVYGLPELNDREDIKNARLIANPG 153 (340)
T ss_pred hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecc-hhhcCCcchheeecCcccccHHHHhhhhhccCCC
Confidence 1111110 0123565566655444444444333344455677543 33 45 66766 56322222467899999
Q ss_pred chhhh----HHHHHHHHHhhcCeeEEEEEEEeecCCCcccccCCCCCcccccccccceeecCC
Q 025476 154 CTTNC----LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 212 (252)
Q Consensus 154 CtT~~----Lap~lk~L~~~fgI~~~~~tTvha~t~~q~~~D~~~~~~~r~~r~~a~nIiP~~ 212 (252)
|-.+. |.|++|.+.-+-. +-.+-.||++.. +|+.++ +-.-++.|+||..
T Consensus 154 CYaTgsQl~l~Pllk~i~g~p~-----ifgvSGySGAGt---kpspkN--d~~~l~nnlipY~ 206 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAILGKPE-----IFGVSGYSGAGT---KPSPKN--DYSELANNLIPYG 206 (340)
T ss_pred cccccCcccchHHHHHhcCCcc-----eeeeccccCCCC---CCCCcc--CHHHHhcCCcccc
Confidence 96443 4777777653322 122233444321 232222 2335789999985
No 139
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.17 E-value=1.6 Score=38.61 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=74.2
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC-CCChhhhheeee-eecccccCCCcceEEcCCeeeEECC-eeEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFK-YDSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~-~~~~~~~ayll~-ydS~~G~~~~~~v~~~~~~~l~i~G-~~i~v~ 79 (252)
..||.|.|.|-+|..++++|...+ +.-+.+-|. ..++..+-.-+- ..++-|+.+ -++- .+. -..+|- -++...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~K-ae~~-~~~-l~~inP~~~V~~~ 86 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPK-VEVM-AER-IRDINPECEVDAV 86 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcH-HHHH-HHH-HHHHCCCcEEEEe
Confidence 468999999999999999997665 433333333 223333322221 234556543 1110 000 001221 122222
Q ss_pred eec-CCCCCC-CcccCccEEEecCCCCCCHHhHH-HHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcCCchh
Q 025476 80 GVR-NPEEIP-WAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTT 156 (252)
Q Consensus 80 ~~~-dp~~~~-w~~~~vdiV~e~tg~f~~~~~a~-~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~asCtT 156 (252)
.+. ++++++ +-..+.|+|++|......+...- ...+.+. |+|.-+-...++++..--|+.-+.|.
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~i------------p~I~s~g~g~~~dp~~i~i~di~~t~ 154 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKI------------PVISSMGAGGKLDPTRIRVADISKTS 154 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCC------------CEEEEeCCcCCCCCCeEEEccEeccc
Confidence 110 111111 11236899999998765543222 2222332 33322222334443221244444444
Q ss_pred h-hHHHHHHHHHhhcCeeEEEEEEEe
Q 025476 157 N-CLAPLAKVIHDKFGIVEGLMTTVH 181 (252)
Q Consensus 157 ~-~Lap~lk~L~~~fgI~~~~~tTvh 181 (252)
+ .|+..++--.++-||..+ +..|.
T Consensus 155 ~~pla~~~R~~Lrk~~~~~~-~~~v~ 179 (231)
T cd00755 155 GDPLARKVRKRLRKRGIFFG-VPVVY 179 (231)
T ss_pred cCcHHHHHHHHHHHcCCCCC-eEEEe
Confidence 4 355555555555566533 34443
No 140
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=88.15 E-value=1.1 Score=41.20 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=23.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~-~ivain 34 (252)
|||+|.|. |.+|..++..+...+-. +++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 59999996 99999999988877632 455543
No 141
>PLN02306 hydroxypyruvate reductase
Probab=88.09 E-value=0.67 Score=44.16 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=23.7
Q ss_pred ceEEEEcCChhHHHHHHHHH-cCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~-~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+. ..+ +++++.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fG-m~V~~~d 196 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYD 196 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999874 444 7765543
No 142
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.94 E-value=1.2 Score=43.11 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=23.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
-+|+|.|+|.||+.+++.+...+ .+++.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 47999999999999999887776 664443
No 143
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.78 E-value=0.71 Score=43.94 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=25.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|.||+.+++.+...+ +++++.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG-IKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999887766 8876654
No 144
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.67 E-value=6.5 Score=36.04 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=67.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
+|.|.|.|-+|....+.+...+ .+++++.....+.+.+. +++ + +| - .. ++-..-.+ . +
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~-~~~-~--~G-----------a-~~-v~~~~~~~-~--~- 232 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKAD-IVE-E--LG-----------A-TY-VNSSKTPV-A--E- 232 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHH-HHH-H--cC-----------C-EE-ecCCccch-h--h-
Confidence 7899999999999988877665 57777653111222221 111 0 11 0 00 11000000 0 0
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCe-EE-eecCccccCCCCCeEEcCCchhhhHHHH
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM-FV-VGVNENEYKPELNIVSNASCTTNCLAPL 162 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~-vV-~gVN~~~~~~~~~IIS~asCtT~~Lap~ 162 (252)
.. .+ .++|+||||+|.....+.+-..++.|.+-+++..++.+.+. +- ..++...+.++..+..+-.++..-+..+
T Consensus 233 ~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~ 309 (355)
T cd08230 233 VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQA 309 (355)
T ss_pred hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHH
Confidence 00 12 27899999999654445556667666533333333321111 10 0111122223455666555554455556
Q ss_pred HHHHHh
Q 025476 163 AKVIHD 168 (252)
Q Consensus 163 lk~L~~ 168 (252)
++.|.+
T Consensus 310 ~~~l~~ 315 (355)
T cd08230 310 VEDLAQ 315 (355)
T ss_pred HHHHHh
Confidence 666654
No 145
>PLN03139 formate dehydrogenase; Provisional
Probab=87.61 E-value=0.68 Score=44.18 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=24.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.+|||+|+|+||+.+++.+...+ +++.+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG-~~V~~~ 228 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFN-CNLLYH 228 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999987654 776553
No 146
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.43 E-value=0.44 Score=41.70 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=25.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.-||.|+|.|-+|..+++.+...+ +.-+.+.|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 469999999999999999997665 544445544
No 147
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=87.42 E-value=2.2 Score=39.91 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=31.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeee
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK 48 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ 48 (252)
.+|.|-| .|.||..+.+.|+++++-=.-.+-|+ .+.+...||.+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~-~~~k~~~~L~~ 51 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDP-EDEKKTEHLRK 51 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCc-chhhhHHHHHh
Confidence 6999999 79999999999999984333344454 34444444543
No 148
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.11 E-value=0.34 Score=41.89 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
..||+|+|.|-+|..++..+...+ +.-+.+-|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 468999999999999999887665 643444444
No 149
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.99 E-value=2 Score=39.86 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=72.9
Q ss_pred cceEEEEcC-ChhHHHHHHHHHcCCCce-----EEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeE
Q 025476 3 KVKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (252)
Q Consensus 3 ~~kv~InG~-GrIGr~v~r~~~~~~~~~-----ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i 76 (252)
..||+|+|. |.||..++..+...+-+. -+++.|...+.+. +.-..-|-.|..+ .+.. .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~-a~g~a~Dl~~~~~-------------~~~~-~~ 66 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKA-LEGVAMELEDCAF-------------PLLA-EI 66 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccc-cceeehhhhhccc-------------cccC-ce
Confidence 469999998 999999988887655332 2233333111110 1111123222211 1112 13
Q ss_pred EEEeecCCCCCCCcccCccEEEecCCCCC----CHH------------hHHHHHhCC---CCEEEEcCCCCCCCeEEeec
Q 025476 77 TVFGVRNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGG---AKKVIISAPSKDAPMFVVGV 137 (252)
Q Consensus 77 ~v~~~~dp~~~~w~~~~vdiV~e~tg~f~----~~~------------~a~~h~~~G---akkViis~ps~d~p~vV~gV 137 (252)
++. ..+.+++. +.|+|+-++|.-. ++. .++.-.+.+ +.=+++|+| .|.-+.+.--
T Consensus 67 ~i~-~~~~~~~~----daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP-vD~~t~~~~k 140 (322)
T cd01338 67 VIT-DDPNVAFK----DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP-CNTNALIAMK 140 (322)
T ss_pred EEe-cCcHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc-HHHHHHHHHH
Confidence 343 34555554 8999999999733 322 112222222 212333655 2321111100
Q ss_pred CccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCeeE
Q 025476 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (252)
Q Consensus 138 N~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~~ 174 (252)
....+. ..+++.. |.---+.+-..|.+.+|+.-
T Consensus 141 ~sg~~p-~~~ViG~---t~LDs~Rl~~~la~~lgv~~ 173 (322)
T cd01338 141 NAPDIP-PDNFTAM---TRLDHNRAKSQLAKKAGVPV 173 (322)
T ss_pred HcCCCC-hHheEEe---hHHHHHHHHHHHHHHhCcCh
Confidence 000122 3567766 45556788888999999854
No 150
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.83 E-value=0.9 Score=40.86 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+|+|.||..+++.+.+.+ .++.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g-~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG-HTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence 38999999999999999987765 6765554
No 151
>PTZ00325 malate dehydrogenase; Provisional
Probab=86.69 E-value=6 Score=36.79 Aligned_cols=141 Identities=22% Similarity=0.267 Sum_probs=72.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
.||+|.|. |+||..++..+..++...-+.+-|.. .++- ..+ |-.|. . . ...+....
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~-~~~g--~a~--Dl~~~-----------~-~------~~~v~~~t 65 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV-GAPG--VAA--DLSHI-----------D-T------PAKVTGYA 65 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC-CCcc--ccc--chhhc-----------C-c------CceEEEec
Confidence 59999997 99999998887755533323333331 0000 000 11110 0 0 11122222
Q ss_pred CCCC--CCCcccCccEEEecCCCCCCH----------------HhHHHHHhCCCCEEEE--cCCCCCCCeEEee---cCc
Q 025476 83 NPEE--IPWAETGAEYVVESTGVFTDK----------------DKAAAHLKGGAKKVII--SAPSKDAPMFVVG---VNE 139 (252)
Q Consensus 83 dp~~--~~w~~~~vdiV~e~tg~f~~~----------------~~a~~h~~~GakkVii--s~ps~d~p~vV~g---VN~ 139 (252)
|+.+ -+. .|.|+|+-+.|.-... +..+.-.+.|.+++|+ |+| .|.-+.+.. -..
T Consensus 66 d~~~~~~~l--~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP-vdv~~~~~~~~~~~~ 142 (321)
T PTZ00325 66 DGELWEKAL--RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP-VNSTVPIAAETLKKA 142 (321)
T ss_pred CCCchHHHh--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc-HHHHHHHHHhhhhhc
Confidence 3221 111 3899999999974331 1223445578888776 444 232111110 011
Q ss_pred cccCCCCCeEEcCCchhhhHHHHHHHHHhhcCeeE
Q 025476 140 NEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (252)
Q Consensus 140 ~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~~ 174 (252)
..+ +..+++... +-=-+.+-..|-+.+++.-
T Consensus 143 sg~-p~~~viG~g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 143 GVY-DPRKLFGVT---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred cCC-Chhheeech---hHHHHHHHHHHHHHhCcCh
Confidence 112 246778773 3455888899999999873
No 152
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.59 E-value=6.8 Score=35.35 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
++.|+|.|.+|...++.+...+ .+.+.+.|.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~ 177 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET 177 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence 6889999999999988776665 654444443
No 153
>PLN02602 lactate dehydrogenase
Probab=86.56 E-value=0.97 Score=42.52 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=75.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
.||+|+|.|.||..++..+...+-..-+.+-|.. .+. +.=...|-.|. ..+.+. ..+....|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~--~~~-~~g~a~DL~~~--------------~~~~~~-~~i~~~~d 99 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN--PDK-LRGEMLDLQHA--------------AAFLPR-TKILASTD 99 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC--Cch-hhHHHHHHHhh--------------hhcCCC-CEEEeCCC
Confidence 5999999999999999888766633333344432 111 11111122221 112222 23332234
Q ss_pred CCCCCCcccCccEEEecCCCCC----CHH------------hHHHHHhCC--CCEEEEcCCCCCCCeEEeecCccccCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGG--AKKVIISAPSKDAPMFVVGVNENEYKPE 145 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~----~~~------------~a~~h~~~G--akkViis~ps~d~p~vV~gVN~~~~~~~ 145 (252)
.+++ .+.|+|+-++|.-. ++. .++.-.+.+ +.-+++|+|. |.-+.+. -....+. .
T Consensus 100 y~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv-dv~t~~~-~k~sg~p-~ 172 (350)
T PLN02602 100 YAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV-DVLTYVA-WKLSGFP-A 172 (350)
T ss_pred HHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch-HHHHHHH-HHHhCCC-H
Confidence 4443 28999999998632 331 222222233 3334457763 2111111 0001121 3
Q ss_pred CCeEEcCCchhhhHHHHHHHHHhhcCeeEEEEEEE
Q 025476 146 LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180 (252)
Q Consensus 146 ~~IIS~asCtT~~Lap~lk~L~~~fgI~~~~~tTv 180 (252)
.++|.. ||.-=-+.+-..|.+.+|+..-.+..+
T Consensus 173 ~rviG~--gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 173 NRVIGS--GTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred HHEEee--cchHHHHHHHHHHHHHhCCCccceeee
Confidence 456654 444445678888889999875544433
No 154
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.51 E-value=1.2 Score=42.88 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-+|+|.|+|.||+.+++.+...+ .+++. .|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 48999999999999999887776 56544 444
No 155
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.05 E-value=0.76 Score=38.69 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||.|+|.|-+|..+++.+...+ +.-+.+-|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6899999999999999987665 543344443
No 156
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.03 E-value=0.62 Score=45.89 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=27.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhh
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ 43 (252)
.||+|+|.|.+|+-+++.+...+ ++++.. |. +.+.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~-d~--~~e~l 41 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLY-DI--RAEAL 41 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC-CeEEEE-eC--CHHHH
Confidence 48999999999999999887775 776554 43 44444
No 157
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.98 E-value=1.1 Score=42.88 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|.++||+|+|+|.+|..++.++.+.+ +++++++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 56689999999999999999988776 7877765
No 158
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.85 E-value=1.1 Score=41.47 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=24.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.||+|+|.|.+|..++-.+...+-..-+.+-|.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 699999999999999888876653333334343
No 159
>PLN00106 malate dehydrogenase
Probab=85.68 E-value=7.3 Score=36.24 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=71.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEE-EEee
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT-VFGV 81 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~-v~~~ 81 (252)
.||+|.|. |+||..++..+..++..+-+.+-|... +.-..-|-.|.... . .+. +...
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~a~Dl~~~~~~-----------~-----~i~~~~~~ 77 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGVAADVSHINTP-----------A-----QVRGFLGD 77 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCeeEchhhhCCcC-----------c-----eEEEEeCC
Confidence 69999997 999999999887666443333334311 01001121111100 0 111 1111
Q ss_pred cCC-CCCCCcccCccEEEecCCCCCC----HH------------hHHHHHhCCCCEEEE--cCCCCC-CCeEEeec-Ccc
Q 025476 82 RNP-EEIPWAETGAEYVVESTGVFTD----KD------------KAAAHLKGGAKKVII--SAPSKD-APMFVVGV-NEN 140 (252)
Q Consensus 82 ~dp-~~~~w~~~~vdiV~e~tg~f~~----~~------------~a~~h~~~GakkVii--s~ps~d-~p~vV~gV-N~~ 140 (252)
.|+ +.+ .++|+|+-++|.-.. +. .++...+.+-+++++ |+|..- .|.+.+-+ +..
T Consensus 78 ~d~~~~l----~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s 153 (323)
T PLN00106 78 DQLGDAL----KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAG 153 (323)
T ss_pred CCHHHHc----CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcC
Confidence 111 223 389999999996332 21 234445566666555 666321 12222111 111
Q ss_pred ccCCCCCeEEcCCchhhhHHHHHHHHHhhcCee
Q 025476 141 EYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (252)
Q Consensus 141 ~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~ 173 (252)
.+ ++.+++.... --.+.+-..|.+.+|+.
T Consensus 154 ~~-p~~~viG~~~---LDs~Rl~~~lA~~lgv~ 182 (323)
T PLN00106 154 VY-DPKKLFGVTT---LDVVRANTFVAEKKGLD 182 (323)
T ss_pred CC-CcceEEEEec---chHHHHHHHHHHHhCCC
Confidence 12 2467888743 33456777888889987
No 160
>PLN02712 arogenate dehydrogenase
Probab=85.63 E-value=1.2 Score=45.53 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=26.8
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+||||+|+|.||+.+++.+.+.+ .++++++.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~dr 400 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYSR 400 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 479999999999999999987765 77776654
No 161
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.52 E-value=1.2 Score=42.46 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=25.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|.||+.+++.+...+ +++++.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999987765 7776553
No 162
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=85.27 E-value=1.2 Score=37.84 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=22.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+|+|.+|-..+-.+.+.+ ++++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEe
Confidence 59999999999998887777776 8877774
No 163
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=85.26 E-value=3.2 Score=36.70 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=24.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|.| +|.+|+.+++.|.+++ .++.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeC
Confidence 478999 7999999999998875 77666653
No 164
>PRK08605 D-lactate dehydrogenase; Validated
Probab=85.18 E-value=1.3 Score=41.21 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=23.0
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.++|||+|+|+||+.+++.+...-++++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 3689999999999999998843223665543
No 165
>PRK05442 malate dehydrogenase; Provisional
Probab=85.18 E-value=2.1 Score=39.87 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=74.0
Q ss_pred CC-cceEEEEcC-ChhHHHHHHHHHcCCCce-----EEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECC
Q 025476 1 MG-KVKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE 73 (252)
Q Consensus 1 m~-~~kv~InG~-GrIGr~v~r~~~~~~~~~-----ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G 73 (252)
|+ ..||+|+|. |.+|..++..+...+-+. -+.+-|...+.+ .+.-...|-.|..+ .+..
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~-~~~g~a~Dl~~~~~-------------~~~~ 66 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALK-ALEGVVMELDDCAF-------------PLLA 66 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCccc-ccceeehhhhhhhh-------------hhcC
Confidence 44 479999997 999999888776544222 222333311111 01111112222211 1111
Q ss_pred eeEEEEeecCCCCCCCcccCccEEEecCCCCC----CHH------------hHHHHHhCC---CCEEEEcCCCCCCCeEE
Q 025476 74 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGG---AKKVIISAPSKDAPMFV 134 (252)
Q Consensus 74 ~~i~v~~~~dp~~~~w~~~~vdiV~e~tg~f~----~~~------------~a~~h~~~G---akkViis~ps~d~p~vV 134 (252)
.+.+. ..+.+++. +.|+|+-++|... ++. .++.-.+.+ +.=+++|+| .|.-+.+
T Consensus 67 -~~~i~-~~~y~~~~----daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP-vDv~t~v 139 (326)
T PRK05442 67 -GVVIT-DDPNVAFK----DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP-ANTNALI 139 (326)
T ss_pred -CcEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc-hHHHHHH
Confidence 12332 24445553 8999999999532 332 122222212 222333666 2322222
Q ss_pred eecCccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCeeEEEEE
Q 025476 135 VGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178 (252)
Q Consensus 135 ~gVN~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~~~~~t 178 (252)
.--..-.+ +..+||.. |+-=-+.+-..|.+++++.--.+.
T Consensus 140 ~~k~s~g~-p~~rViG~---t~LDs~R~r~~la~~l~v~~~~V~ 179 (326)
T PRK05442 140 AMKNAPDL-PAENFTAM---TRLDHNRALSQLAAKAGVPVADIK 179 (326)
T ss_pred HHHHcCCC-CHHHEEee---eHHHHHHHHHHHHHHhCcChHHeE
Confidence 11000022 23567776 334457888888999998654443
No 166
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.88 E-value=1.2 Score=44.10 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+...+ +++++.+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 58999999999999999987665 7776664
No 167
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.83 E-value=1.3 Score=40.23 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||||++|+|.+|..+++.+.+.+ .+++..|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g-~~v~v~d 30 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-HEVVGYD 30 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC-CeEEEEE
Confidence 38999999999999999998775 7765543
No 168
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.67 E-value=1.2 Score=41.92 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=31.6
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC--CceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~--~~~ivaind~ 36 (252)
.+|+||.|.|+|++.+++++...+ +.+|+||.|+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~ 41 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP 41 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc
Confidence 489999999999999999998777 7999999999
No 169
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=84.36 E-value=0.55 Score=43.47 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=23.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||.|+|.|-+|..+++.+...+ +.-+.+-|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECC
Confidence 6899999999999999997665 444444443
No 170
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.32 E-value=1.6 Score=39.47 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=24.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+|.|.+|..++..+.+.+ .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 49999999999999999887765 5654443
No 171
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.11 E-value=1.3 Score=43.76 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|+|+||+.+++.+...+ +++++.+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG-MKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 58999999999999999987665 7876665
No 172
>PLN02688 pyrroline-5-carboxylate reductase
Probab=83.93 E-value=1.7 Score=38.36 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=25.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCC---ceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~---~~ivaind~ 36 (252)
|||+++|+|.+|..+++.+.+.+. .+++..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999987652 155555454
No 173
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.81 E-value=1.7 Score=38.99 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
|..|||+++|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCC
Confidence 55689999999999999999998764
No 174
>PLN02712 arogenate dehydrogenase
Probab=83.71 E-value=1.5 Score=44.68 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=26.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
++||||+|+|+||+.+++.+.+.+ +++++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 369999999999999999987775 77777654
No 175
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.69 E-value=1.6 Score=39.68 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=24.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||++|+|.+|..+++.+.+.+ ++++..|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v~d 30 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVGYD 30 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEE
Confidence 8999999999999999998765 7776543
No 176
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.66 E-value=1.8 Score=39.91 Aligned_cols=93 Identities=22% Similarity=0.229 Sum_probs=54.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
-+++|+|.|.+|+.+++++....+++.+.|.+. +++....+.+ .+. . . + |-++..+ .+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~~-----------~~~--~--~--~-~~~~~~~--~~ 185 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFAQ-----------EIQ--S--K--F-NTEIYVV--NS 185 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHHH-----------HHH--H--h--c-CCcEEEe--CC
Confidence 479999999999999988765445787888776 4443322221 000 0 0 0 1111121 22
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ 125 (252)
+++.- .+.|+|+-||+... .... ..++.|+ .|++-
T Consensus 186 ~~~~~---~~aDiVi~aT~s~~-p~i~-~~l~~G~--hV~~i 220 (325)
T PRK08618 186 ADEAI---EEADIIVTVTNAKT-PVFS-EKLKKGV--HINAV 220 (325)
T ss_pred HHHHH---hcCCEEEEccCCCC-cchH-HhcCCCc--EEEec
Confidence 22111 26899999999763 3444 6778888 55533
No 177
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=83.33 E-value=2 Score=38.31 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
|-+|||+|+|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 55689999999999999999998764
No 178
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.11 E-value=2.1 Score=39.06 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivai 33 (252)
||+|+|.|.+|+.++.++...+-. +++.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~ 31 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLI 31 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 899999999999999998877633 44444
No 179
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=83.07 E-value=1.7 Score=39.51 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=24.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|||||+|+|++|..+++.+.+.+ ++++..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g-~~V~~~ 29 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG-HDCVGY 29 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999988765 776654
No 180
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.00 E-value=0.96 Score=40.17 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC-CCChhhhheeeeee-cccccCCCcceEEcCCeee-EEC-CeeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~-~~~~~~~ayll~yd-S~~G~~~~~~v~~~~~~~l-~i~-G~~i~v 78 (252)
.-||.|+|.|-+|..+++.+...+ +.-+.+-|. ..++..+-.-+-|+ +.-|+.+ -+ +... .| .+| .-.|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~K-a~--~a~~-~l~~inp~v~i~~ 98 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPK-VE--SAKD-ALTQINPHIAINP 98 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcH-HH--HHHH-HHHHHCCCcEEEE
Confidence 358999999999999999997665 433344443 23333333333232 3334433 11 0000 11 111 112222
Q ss_pred Eeec-CCCCCC--CcccCccEEEecCCCCCCHHhHH-HHHhCCC
Q 025476 79 FGVR-NPEEIP--WAETGAEYVVESTGVFTDKDKAA-AHLKGGA 118 (252)
Q Consensus 79 ~~~~-dp~~~~--w~~~~vdiV~e~tg~f~~~~~a~-~h~~~Ga 118 (252)
..++ +.++++ + .+.|+|++|+..+.++...- ...+.|.
T Consensus 99 ~~~~i~~~~~~~~~--~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 99 INAKLDDAELAALI--AEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred EeccCCHHHHHHHh--hcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 2211 111111 2 27899999999886654332 3344444
No 181
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.99 E-value=0.85 Score=40.58 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=28.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhhe
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY 45 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ay 45 (252)
.-||.|+|.|-+|..+++.+...+=-+++.+++-..++..+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~R 74 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQR 74 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhh
Confidence 3589999999999999999976652234344333334444433
No 182
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.98 E-value=4.2 Score=36.11 Aligned_cols=136 Identities=16% Similarity=0.241 Sum_probs=69.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+|.|.|.|.+|...++.+...+ .+ ++++ +. +.+.+..+-+ +|- ...++.+.. . +.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~-~~--~~~r~~~a~~----~Ga------------~~~i~~~~~---~-~~ 178 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG-AARVVAA-DP--SPDRRELALS----FGA------------TALAEPEVL---A-ER 178 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE-CC--CHHHHHHHHH----cCC------------cEecCchhh---H-HH
Confidence 6889999999999888877665 55 5555 33 2222211111 110 111111100 0 00
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCcccc-CCCCCeEEcCCchhhhHHHH
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEY-KPELNIVSNASCTTNCLAPL 162 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~-~~~~~IIS~asCtT~~Lap~ 162 (252)
..++. ...++|+||||+|.-.+.+.+-..++.|.+-+++.....+.+. .++...+ .++..|+..-..+...+..+
T Consensus 179 ~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~---~i~~~~~~~~~~~i~g~~~~~~~~~~~~ 254 (280)
T TIGR03366 179 QGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPV---ALDPEQVVRRWLTIRGVHNYEPRHLDQA 254 (280)
T ss_pred HHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCce---eeCHHHHHhCCcEEEecCCCCHHHHHHH
Confidence 00010 1137899999999765556666777766644444333221121 2232222 23445665554444556777
Q ss_pred HHHHHh
Q 025476 163 AKVIHD 168 (252)
Q Consensus 163 lk~L~~ 168 (252)
++.|.+
T Consensus 255 ~~~l~~ 260 (280)
T TIGR03366 255 VRFLAA 260 (280)
T ss_pred HHHHHh
Confidence 777765
No 183
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=82.79 E-value=2.1 Score=38.64 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=26.5
Q ss_pred CCc-ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~-~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|+. .||+|+|.|.+|..+++.+...+ ++++..+
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d 34 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG-MDVWLLD 34 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 664 57999999999999999888775 7765553
No 184
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.60 E-value=2.4 Score=39.59 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.6
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
..||.|+|.|.+|..+++.+...+ +.-+.|-|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-IGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999999997766 644444444
No 185
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.54 E-value=1.7 Score=39.53 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.2
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
..+|.|.|.|-+|..++++|...+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999997665
No 186
>PRK05086 malate dehydrogenase; Provisional
Probab=82.32 E-value=14 Score=34.11 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=42.1
Q ss_pred CccEEEecCCCCCCH----------------HhHHHHHhCCCCEEEE--cCCCCCCCeEE-eec--CccccCCCCCeEEc
Q 025476 93 GAEYVVESTGVFTDK----------------DKAAAHLKGGAKKVII--SAPSKDAPMFV-VGV--NENEYKPELNIVSN 151 (252)
Q Consensus 93 ~vdiV~e~tg~f~~~----------------~~a~~h~~~GakkVii--s~ps~d~p~vV-~gV--N~~~~~~~~~IIS~ 151 (252)
+.|+|+-|.|.-... +..+.-.+.+-+++|+ |+|. |+-+.+ ... +...+ +..++|.-
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~-D~~t~~~~~~~~~~sg~-p~~rvig~ 146 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV-NTTVAIAAEVLKKAGVY-DKNKLFGV 146 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch-HHHHHHHHHHHHHhcCC-CHHHEEee
Confidence 799999999974431 1222333355555554 5553 322111 100 11122 24678877
Q ss_pred CCchhhhHHHHHHHHHhhcCeeE
Q 025476 152 ASCTTNCLAPLAKVIHDKFGIVE 174 (252)
Q Consensus 152 asCtT~~Lap~lk~L~~~fgI~~ 174 (252)
|+ ---+.+-..|.+.+|+..
T Consensus 147 --~~-Lds~R~~~~ia~~l~~~~ 166 (312)
T PRK05086 147 --TT-LDVIRSETFVAELKGKQP 166 (312)
T ss_pred --ec-HHHHHHHHHHHHHhCCCh
Confidence 43 344678888888999873
No 187
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.21 E-value=2 Score=39.18 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
+.++|+|.|+|.||+.++|.+.+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3479999999999999999998776
No 188
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.16 E-value=2.1 Score=38.96 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.4
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
+..||+|+|+|.+|..+++.+...+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g 29 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLG 29 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcC
Confidence 3469999999999999999887665
No 189
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.75 E-value=1.9 Score=39.73 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||+|+|.|.||..++..+..++-+.-+.+-|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999888877664443344444
No 190
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.60 E-value=5.8 Score=36.68 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=23.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|||+|+|. |.+|..++..+...+-..-+.+-|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 49999998 9999999888876663333334443
No 191
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.01 E-value=2.7 Score=37.92 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.6
Q ss_pred CC-cceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 1 m~-~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|| ..||+|+|.|.+|..++..+...+ ++++..
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G-~~V~l~ 33 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAG-YDVLLN 33 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEE
Confidence 55 368999999999999999887765 666544
No 192
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.92 E-value=1.3 Score=45.33 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=74.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeee-------eecccccCCCcceEEcCCeeeEECCeeE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-------YDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~-------ydS~~G~~~~~~v~~~~~~~l~i~G~~i 76 (252)
-||+|+|.|.+|+.++..+....+++++. -|+ +.+.+....+ ..-..|++. .+.. .-.. ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l-~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~-----~~~~-~~~~--~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRI-KDI--NPQGINHALKYSWDLLDKKVKRRHLK-----PSER-DKQM--ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEE-EeC--CHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHH-HHHH--hcE
Confidence 47999999999999988776343477544 444 3443322111 111112211 0000 0000 123
Q ss_pred EEEeecCCCCCCCcccCccEEEecCCCCCCHH-----hHHHHHhCCCCEEEEcCCCC----------CCCeEEeec---C
Q 025476 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKD-----KAAAHLKGGAKKVIISAPSK----------DAPMFVVGV---N 138 (252)
Q Consensus 77 ~v~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~-----~a~~h~~~GakkViis~ps~----------d~p~vV~gV---N 138 (252)
++. .+.+.+ .++|+|+||........ ....+.+.++ ++-|+.|. ..|-=+.|. |
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~ 450 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFS 450 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCC
Confidence 442 333333 28999999977544432 3344555555 77777762 233223332 2
Q ss_pred ccccCCCCCeEEcCCchhhhHHHHHHHHHhhcCeeEE
Q 025476 139 ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEG 175 (252)
Q Consensus 139 ~~~~~~~~~IIS~asCtT~~Lap~lk~L~~~fgI~~~ 175 (252)
+-.+-+--.||..+.+.-..+.-+...+ +..|..-+
T Consensus 451 P~~~~~lVEvv~g~~Ts~~~~~~~~~~~-~~~gk~pv 486 (708)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALA-KKQGKTPI 486 (708)
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHH-HHcCCceE
Confidence 2222111235666555555555555555 34565433
No 193
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.80 E-value=2.4 Score=37.46 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=24.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC-CceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~-~~~ivaind~ 36 (252)
|||||+|+|++|+.+++.+...+ ..+.+.+.+.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 38999999999999999997664 2232345554
No 194
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=80.73 E-value=2.3 Score=38.72 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
-+++|.|+|++|+.+++.+...+ .+++..+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998776 67665543
No 195
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=80.62 E-value=2.4 Score=39.09 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.5
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|.+++-+.|+|.+|+..+|.+...+.+++|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 45899999999999999999999988999998765
No 196
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=80.13 E-value=2.5 Score=38.46 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|||++|+|++|..+++.+.+.+ +++...
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~ 29 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVT 29 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEE
Confidence 8999999999999999998776 666544
No 197
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.07 E-value=1.1 Score=38.62 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=27.8
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCChhhh
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYM 43 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~-~ivaind~~~~~~~~ 43 (252)
.-||.|+|.|-+|..+++.+...+ + +++.+++-..+++.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL 61 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNL 61 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccch
Confidence 468999999999999999998776 5 444444332333333
No 198
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=79.87 E-value=2.7 Score=38.21 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.||+|+|+|.+|..+++.+.+.+ .++...|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d 31 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFD 31 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEc
Confidence 38999999999999999998776 6655443
No 199
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.46 E-value=6.4 Score=35.95 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=47.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+|.|+|.|.+|...++.+...+ . +++++.. +.+.+..+.+ +|- ..+++-+.-.+ . +
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~----lGa------------~~vi~~~~~~~-~-~- 228 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLARE----MGA------------DKLVNPQNDDL-D-H- 228 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHH----cCC------------cEEecCCcccH-H-H-
Confidence 6889999999999988887665 5 4544432 2333322221 221 11121110001 0 0
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Gak 119 (252)
... .. .++|+||||+|.-.+.+.+-..++.|-+
T Consensus 229 ~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 229 YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000 01 1589999999975445566677776653
No 200
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=79.26 E-value=2.3 Score=38.25 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||||+|+|.+|..+++.+.+.+ ++++..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~d 29 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVTT 29 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEEc
Confidence 6899999999999999988776 7766553
No 201
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.00 E-value=2.7 Score=39.98 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+|+|.+|..++..+.+.+ .++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 38999999999999999988776 6766654
No 202
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.79 E-value=8.6 Score=36.61 Aligned_cols=90 Identities=27% Similarity=0.289 Sum_probs=52.7
Q ss_pred CCcc---eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEE
Q 025476 1 MGKV---KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (252)
Q Consensus 1 m~~~---kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~ 77 (252)
||++ +|.|.|.|..|+..++.+.+.+ .++.+ .|....+... + .|. .| +.
T Consensus 1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~~~~~~~~----------------------~-~l~-~g--~~ 52 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTGLSCVDFFLARG-VTPRV-IDTRITPPGL----------------------D-KLP-EN--VE 52 (438)
T ss_pred CcccCCCEEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcCCCCchhH----------------------H-HHh-cC--CE
Confidence 6653 7999999999999998777766 66544 4431111000 0 110 01 11
Q ss_pred EEe-ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 78 VFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 78 v~~-~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
++. ..++..++ +.|+|+-+.|.-.+.+....+.+.|++ |++
T Consensus 53 ~~~~~~~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 53 RHTGSLNDEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred EEeCCCCHHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 211 12222222 568999988887666777777888884 554
No 203
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.78 E-value=1.2 Score=39.52 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
||.|+|.|-+|..+++.+...+ +.-+.+-|
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD 30 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVID 30 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999999997665 43334433
No 204
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.71 E-value=6.5 Score=37.43 Aligned_cols=94 Identities=23% Similarity=0.280 Sum_probs=53.1
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
..++.|.|.|++|+.+++.+.+.+ .+++. .|.. +.+.+...++ .+ ... | +.++...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~-~d~~-~~~~~~~~~~-----------~l--~~~------~--~~~~~~~ 60 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVIL-TDEK-EEDQLKEALE-----------EL--GEL------G--IELVLGE 60 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeCC-chHHHHHHHH-----------HH--Hhc------C--CEEEeCC
Confidence 468999999999999999999887 56544 4442 1111111110 00 000 1 1122212
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ 125 (252)
.++.. ..+.|+|+-++|.....+......+.|. .|++-
T Consensus 61 ~~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~ 98 (450)
T PRK14106 61 YPEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGE 98 (450)
T ss_pred cchhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 22211 1268999999998777766666666676 34443
No 205
>PRK07877 hypothetical protein; Provisional
Probab=78.61 E-value=1 Score=46.38 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=58.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCc--eEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeee-EECC-eeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTL-LFGE-KPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~--~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l-~i~G-~~i~v 78 (252)
.-||+|+|.| +|..++..+...+ + +|+-+..-..++..+=..+-..+.-|+.+ +++..+ .| .+|- -+|..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K---v~~a~~-~l~~inp~i~v~~ 180 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNK---AVVAAR-RIAELDPYLPVEV 180 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHH---HHHHHH-HHHHHCCCCEEEE
Confidence 3589999999 9999998887655 3 34334322233333323221122235433 111111 11 2332 24444
Q ss_pred Eeec-CCCCCCCcccCccEEEecCCCCCCHHhHH-HHHhCCCCEEEEcCC
Q 025476 79 FGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (252)
Q Consensus 79 ~~~~-dp~~~~w~~~~vdiV~e~tg~f~~~~~a~-~h~~~GakkViis~p 126 (252)
+.+. ++++++=--.++|+|+||+..|.++-... ...+.|. -+|++.
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~ 228 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMAT 228 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 4321 23333200137999999999997764433 3455555 344444
No 206
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=78.59 E-value=3.4 Score=36.90 Aligned_cols=138 Identities=20% Similarity=0.345 Sum_probs=72.0
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CChhhhheeeeeeccccc-CCCcceEEcCCeeeEECC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~--------~~~~~~ayll~ydS~~G~-~~~~~v~~~~~~~l~i~G 73 (252)
..+++|-|||.+|..+++.+.+.+ ..+++|.|.. .+++.+..+. +. +|. +. ... ....+
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~-----~~~---~~~~~ 99 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELG-AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVD-----DYP---LESPD 99 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT-EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHST-----TGT---HTCSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccc-----ccc---ccccc
Confidence 469999999999999999999886 9999997652 1233332221 11 111 11 000 00000
Q ss_pred eeEEEEeecCCCCCCCcccCccEEEecC-CCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCCCCCeEEcC
Q 025476 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNA 152 (252)
Q Consensus 74 ~~i~v~~~~dp~~~~w~~~~vdiV~e~t-g~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~~~~IIS~a 152 (252)
+ ...+. +.+++ | +..+|+.+=|+ +.-++.+.++..+++||| +|+-+. +-|+- ++-. +.+. +.+|+-.|
T Consensus 100 ~-~~~~~--~~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIvegA--N~p~t-~~a~-~~L~-~rGI~viP 168 (244)
T PF00208_consen 100 G-AEYIP--NDDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEGA--NGPLT-PEAD-EILR-ERGILVIP 168 (244)
T ss_dssp T-SEEEC--HHCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEESS--SSSBS-HHHH-HHHH-HTT-EEE-
T ss_pred c-eeEec--ccccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeCc--chhcc-HHHH-HHHH-HCCCEEEc
Confidence 0 11111 11111 3 35899999987 566677777767788886 455332 22221 1111 1221 45666666
Q ss_pred CchhhhHHHHH
Q 025476 153 SCTTNCLAPLA 163 (252)
Q Consensus 153 sCtT~~Lap~l 163 (252)
.=.+|+-..+.
T Consensus 169 D~~aNaGGvi~ 179 (244)
T PF00208_consen 169 DFLANAGGVIV 179 (244)
T ss_dssp HHHHTTHHHHH
T ss_pred chhhcCCCeEe
Confidence 66666655543
No 207
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.54 E-value=9 Score=37.39 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=49.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
-+|.|.|+|++|+..++.+...+ .++++ .|. ..+....+-+ +| - .+... ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~--~~~~~~~l~~----~g-----------~-~~~~~--------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD--DPDALRPHAE----RG-----------V-ATVST--------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC--CHHHHHHHHh----CC-----------C-EEEcC--------cch
Confidence 48999999999999999887776 66544 553 2222211110 00 0 11111 112
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
++.+. +.|+|+.+.|.-.+........+.|.
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22232 57999999998776666666667776
No 208
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=78.40 E-value=3.2 Score=38.86 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+|||+|+|.+|+.+++.+...+ ++++..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 68999999999999999998776 67655443
No 209
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=78.06 E-value=2.7 Score=38.29 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=28.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCC--------CceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~--------~~~ivaind~ 36 (252)
|++++|+++|+|-+|+.+++.+.... .+.+|+++|.
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 67899999999999999998774211 3788888875
No 210
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.97 E-value=3.2 Score=37.81 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.5
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.|||+|+|+|.+|+.+++.+...+ .++...+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~ 34 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVRVWS 34 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998776 6665554
No 211
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=77.96 E-value=0.98 Score=42.77 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCChhhhheeeeee-cccccCCCcc-----eEEcCCeeeEECCee
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYD-SVHGQWKHHE-----LKVKDDKTLLFGEKP 75 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~-~ivaind~~~~~~~~ayll~yd-S~~G~~~~~~-----v~~~~~~~l~i~G~~ 75 (252)
.-||.|+|.|-+|..+++.+...+ + +++-+++-..++..+-.-+-|+ +.-|+.+ .+ ++.-+. .+.+....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~K-a~~~~~~l~~~np-~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPK-VEVAAERLKEIQP-DIRVNALR 117 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHH-HHHHHHHHHHHCC-CCeeEEee
Confidence 468999999999999999997766 4 4444443333444443333222 2223322 10 000111 22222111
Q ss_pred EEEEeecCCCCCCCcccCccEEEecCCCCCCHHhHH-HHHhCCCC
Q 025476 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (252)
Q Consensus 76 i~v~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~-~h~~~Gak 119 (252)
-.+ +++++.---.+.|+|++|+..+.++...- ...+.|..
T Consensus 118 ~~i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 118 ERL----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred eec----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 112 12221100137899999999987765332 34455654
No 212
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=77.88 E-value=4.4 Score=36.57 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=61.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC--CceEEEEeCCCC-ChhhhheeeeeecccccCCCcce-----EEcCCeeeEECCee
Q 025476 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHEL-----KVKDDKTLLFGEKP 75 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~--~~~ivaind~~~-~~~~~ayll~ydS~~G~~~~~~v-----~~~~~~~l~i~G~~ 75 (252)
-+|.|.|.|-+|..+.++|.-.+ ++.|+=..|.+. +.|--.+.+ -+++|+.+ -++ +.-+- ...+....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~--~~~iGk~K-v~vm~eri~~InP-~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL--LGDIGKPK-VEVMKERIKQINP-ECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhh--hhhcccHH-HHHHHHHHHhhCC-CceEeehH
Confidence 47999999999999999997665 233322233221 233322333 23466644 111 11111 11111111
Q ss_pred EEEEeecCCCCCCCcccCccEEEecCCCCCCHHhHHH-HHhCCCCEEEEcCCCCC--CCeEE
Q 025476 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA-HLKGGAKKVIISAPSKD--APMFV 134 (252)
Q Consensus 76 i~v~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~-h~~~GakkViis~ps~d--~p~vV 134 (252)
. .+.+++.+++-.. +.|||+||......+-..-. ....+- +||-|..... +|+-+
T Consensus 107 ~-f~t~en~~~~~~~--~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss~Gag~k~DPTri 164 (263)
T COG1179 107 D-FITEENLEDLLSK--GFDYVIDAIDSVRAKVALIAYCRRNKI-PVISSMGAGGKLDPTRI 164 (263)
T ss_pred h-hhCHhHHHHHhcC--CCCEEEEchhhhHHHHHHHHHHHHcCC-CEEeeccccCCCCCceE
Confidence 1 1122333344333 89999999998877644333 333444 4555555332 67543
No 213
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=77.79 E-value=6.6 Score=35.10 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|-|-| .|.||+.+++.+.+++ .+++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 5799999 8999999999998886 6766654
No 214
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.58 E-value=1.6 Score=41.04 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=54.6
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC-CCChhhhheeeeee-cccccCCCcceEEcCCeee-EEC-CeeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~-~~~~~~~ayll~yd-S~~G~~~~~~v~~~~~~~l-~i~-G~~i~v 78 (252)
.-||.|+|.|-+|..+++.+...+ +.-+.+-|. ..++..+-.-+-|+ ..-|+.+ +++... .| .+| .-.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K---a~~a~~-~l~~~np~v~v~~ 102 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK---AESARE-AMLALNPDVKVTV 102 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChH---HHHHHH-HHHHHCCCcEEEE
Confidence 469999999999999999987665 444444443 22333333322221 1123222 111001 11 112 112222
Q ss_pred Eee-cCCCC-CCCcccCccEEEecCCCCCCHHhH-HHHHhCCCC
Q 025476 79 FGV-RNPEE-IPWAETGAEYVVESTGVFTDKDKA-AAHLKGGAK 119 (252)
Q Consensus 79 ~~~-~dp~~-~~w~~~~vdiV~e~tg~f~~~~~a-~~h~~~Gak 119 (252)
..+ -++++ .++ -.+.|+|++|+..+.++... ....+.+.+
T Consensus 103 ~~~~i~~~~~~~~-~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 103 SVRRLTWSNALDE-LRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred EEeecCHHHHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 211 11111 011 13789999999998776533 234555653
No 215
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=77.08 E-value=3.9 Score=37.88 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.3
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
..||+|+|+|.+|+.+++.+...+ ++++...++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~~ 35 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLRK 35 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEECc
Confidence 468999999999999999998776 665544443
No 216
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=77.01 E-value=18 Score=34.91 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~ 37 (252)
.+|+|-|||.+|+..++.+.+.+ .++|++.|..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~G-Akvva~sds~ 240 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELG-AKVVAVSDSK 240 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcC-CEEEEEEcCC
Confidence 68999999999999999997774 9999999874
No 217
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=76.97 E-value=4 Score=34.45 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||+|+|.|.+|+.++..+...+ ++++ +.|+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~-l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVT-LYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEE-EE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEE-EEEC
Confidence 7999999999999988777665 7654 4444
No 218
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.79 E-value=4.1 Score=36.64 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCC---ceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~---~~ivaind 35 (252)
+||+|+|+|.+|..+++.+.+.+. .+++.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 489999999999999999876642 35555543
No 219
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.66 E-value=4 Score=37.40 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=25.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||+|+|.|.+|..++..+...+ .++...+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG-VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 59999999999999999888765 66555543
No 220
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.53 E-value=4.1 Score=36.49 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=24.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.||+|+|.|.+|..++..+...+ .+++.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~ 32 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMV 32 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence 48999999999999999887775 666655
No 221
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.19 E-value=4.2 Score=36.68 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.0
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCC
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
|.+||+++|+|.+|..+++.+.+.+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g 25 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKN 25 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCC
Confidence 4479999999999999999998765
No 222
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=76.17 E-value=2.1 Score=40.20 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=19.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
-+|||.|+|+||+.+++.+...+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhcc
Confidence 48999999999999999875543
No 223
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.16 E-value=4 Score=37.19 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
++|+|+|.|.+|..++..+...+ .+++..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEEe
Confidence 48999999999999999888776 6655553
No 224
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.14 E-value=15 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=25.5
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|-|-| .|.||+.+++.|.+.+ .++++++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG-HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC-CeEEEEeC
Confidence 488999 7999999999998875 78777765
No 225
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=76.12 E-value=2.6 Score=43.21 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=23.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.||+|+|.|.+|+.++..+..+.++++ .+.|+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V-~l~d~ 336 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPV-RIKDI 336 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeE-EEEeC
Confidence 489999999999999876653333664 34555
No 226
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=75.98 E-value=29 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=25.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|-|+|-|.+|...++.+.+.+ .+++.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 58999999999999999988776 6666663
No 227
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.67 E-value=4.8 Score=36.50 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.||+|+|.|.+|..++..+...+ ++++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999999887665 6766553
No 228
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.54 E-value=1.9 Score=44.40 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=24.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-||+|+|.|.+|..++..+...+ ++++ +.|+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~-l~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIV-MKDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEE-EEeC
Confidence 38999999999999998777665 7654 4444
No 229
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.20 E-value=2.6 Score=43.27 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-||+|+|.|.+|+.++..+...+ ++++- .|+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l-~d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIM-KDI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEE-EeC
Confidence 37999999999999988776665 66544 444
No 230
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.19 E-value=5.6 Score=30.20 Aligned_cols=29 Identities=31% Similarity=0.673 Sum_probs=22.8
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 6 IGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 6 v~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|-|.|+|++|+.+++.+.+. +.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 46899999999999999884 467777754
No 231
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=75.07 E-value=10 Score=34.68 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=22.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEE
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVA 32 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~iva 32 (252)
-||.|.| .|++|..+++.+...+ +++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~ 35 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYG-TNIVG 35 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCC-CCEEE
Confidence 4899999 7999999999997766 44443
No 232
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.06 E-value=14 Score=35.52 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|.|+|.|.+|..+++.+.+++ .+++.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999988776 7765554
No 233
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.97 E-value=9 Score=37.16 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=48.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
-||+|.|+|+-|+..+|.+.+.+ .+++ +.|.....+ . - + . .+.+ ++. .. ++...+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v~-~~d~~~~~~-~---~--~--~-----~~l~-~~~-~~--------~~~~~~ 63 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQA-LTLFCNAVE-A---R--E--V-----GALA-DAA-LL--------VETEAS 63 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEEE-EEcCCCccc-c---h--H--H-----HHHh-hcC-EE--------EeCCCC
Confidence 48999999999999999998776 5543 344310000 0 0 0 0 0000 011 11 112223
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
++.++ +.|+|+-+.|.-.+.+......+.|.
T Consensus 64 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 64 AQRLA----AFDVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred hHHcc----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 33332 67999999998766666666666666
No 234
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.96 E-value=6.2 Score=35.70 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
+|.|+|.|.+|...++.+...+ .+ ++++.
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~ 195 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALG-AEDVIGVD 195 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 7889999999999888876665 56 66654
No 235
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=74.87 E-value=4.9 Score=36.69 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=26.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+||-|-| .|.||+.+++.+.+.++.++++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4899999 6999999999998765578888753
No 236
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=74.71 E-value=7.9 Score=37.39 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-++.|+|.|-+|+++++++.+.+--+++.+|-.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 479999999999999999998874555555543
No 237
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.56 E-value=5.3 Score=35.98 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-||+|+|.|.+|..++..+...+ ++++.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEe
Confidence 48999999999999999887775 6765553
No 238
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=74.53 E-value=4.5 Score=39.72 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=24.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.+|+|+|+|+||+.+++.+...+ .+++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999988776 665444
No 239
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.52 E-value=1.7 Score=44.88 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=26.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhh
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT 44 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~a 44 (252)
-+|+|+|.|.+|..++..+...+ ++++- -|+ +.+.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G-~~V~l-~d~--~~~~l~ 372 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG-LKTVL-KDA--TPAGLD 372 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC-CcEEE-ecC--CHHHHH
Confidence 47999999999999988777665 77544 444 455443
No 240
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=74.46 E-value=1.9 Score=43.89 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=24.5
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
..||.|+|.|-+|..+++.|...+ +.-+.+.|
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G-Vg~ItlVD 369 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG-VRHITFVD 369 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 369999999999999999998765 43333433
No 241
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.20 E-value=10 Score=35.14 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHcCC
Q 025476 4 VKIGINGF-GRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG~-GrIGr~v~r~~~~~~ 26 (252)
.||+|.|. |.||..++..+...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999997 999999998887655
No 242
>PRK08818 prephenate dehydrogenase; Provisional
Probab=74.03 E-value=5.3 Score=37.94 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=24.6
Q ss_pred cceEEEEcC-ChhHHHHHHHHHcCCCceEEEE
Q 025476 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 3 ~~kv~InG~-GrIGr~v~r~~~~~~~~~ivai 33 (252)
..+|+|+|+ |.||..+++++.+..+.+++++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 579999999 9999999999976544665443
No 243
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=73.91 E-value=5.6 Score=34.37 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|||+|+| +|.+|..+++.+.+.+ .+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 4899997 9999999999998775 555444
No 244
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=73.86 E-value=5.6 Score=32.45 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.4
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 6 v~InG-~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|.|.| .|.+|+.+++.|.+++ .+++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 67899 7999999999999998 888888754
No 245
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=73.64 E-value=4.3 Score=38.37 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=22.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
-+||.||||||+.+++.+..-+ +.++.-.+
T Consensus 148 TLgvlG~GrIGseVA~r~k~~g-m~vI~~dp 177 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMG-MHVIGYDP 177 (406)
T ss_pred EEEEeecccchHHHHHHHHhcC-ceEEeecC
Confidence 5899999999999999886554 55544443
No 246
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=73.59 E-value=6.2 Score=31.95 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=56.4
Q ss_pred EEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCe-------eeEECCeeE
Q 025476 6 IGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDK-------TLLFGEKPV 76 (252)
Q Consensus 6 v~InG-~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~-------~l~i~G~~i 76 (252)
|.|.| +|-||++.++.+.+.+ +|+++++.-- -+.+.+....+ .|.+ .-+-..+.+ .+.-.+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~~q~~---~f~p---~~v~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLAEQAR---EFKP---KYVVIADEEAYEELKKALPSKGPGI 73 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHHHHHH---HHT----SEEEESSHHHHHHHHHHHHHTTSSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHHHHHH---HhCC---CEEEEcCHHHHHHHHHHhhhcCCCC
Confidence 68999 8999999999997766 6999999763 35555544432 0100 000000000 000011122
Q ss_pred EEEeecC-CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 77 TVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 77 ~v~~~~d-p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
+++...+ ..++- .+.++|+|+.+.-.|...+-.-..+++| |++.+.
T Consensus 74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaLA 120 (129)
T PF02670_consen 74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIALA 120 (129)
T ss_dssp EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE-
T ss_pred EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEEe
Confidence 3322110 00100 1136888888877777776666777887 455553
No 247
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.57 E-value=3.3 Score=38.81 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
-||.|.|.|.||-.-...+...+--++ .+.|+....=.+|.-|-.|- ....... . .+..+.+.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~V-Vi~d~~~~Rle~Ak~~Ga~~--------~~~~~~~-~------~~~~~~~~- 233 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDV-VITDLVANRLELAKKFGATV--------TDPSSHK-S------SPQELAEL- 233 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcE-EEeecCHHHHHHHHHhCCeE--------Eeecccc-c------cHHHHHHH-
Confidence 488999999999877776655553343 45555322222222221110 0000000 0 00000000
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
.++. .++...|++|||||...+.+.+-..++.|=
T Consensus 234 v~~~-~g~~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 234 VEKA-LGKKQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred HHhh-ccccCCCeEEEccCchHHHHHHHHHhccCC
Confidence 0000 122348999999999999888777666544
No 248
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=73.46 E-value=9.2 Score=35.11 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=23.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-||.|.| .|.+|+.+++++.+.+.-.+..||
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVn 40 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTNIVGGVT 40 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCCEEEEEC
Confidence 5899999 799999999999876522444565
No 249
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.41 E-value=32 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|-|+|.|.+|...++.+.+.+ .+++.|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 58999999999999999998876 6776665
No 250
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=73.27 E-value=11 Score=37.35 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-||.|.|.|.+|...++.+...+ .++ .+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V-~a~D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AIV-RAFDT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEE-EEEeC
Confidence 58999999999999999887776 454 44455
No 251
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=73.19 E-value=4.5 Score=39.62 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=65.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccc----cCCC--cceEE-c-CCeeeE---EC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG----QWKH--HELKV-K-DDKTLL---FG 72 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G----~~~~--~~v~~-~-~~~~l~---i~ 72 (252)
.+|||+|+|.+|..+++++.+++ +++...| . +.+...-+.+..-..| .+.. .-++. + .+ .+. .+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~d-r--~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d-~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYN-R--TYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPR-KVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEe-C--CHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCC-EEEEEeCC
Confidence 48999999999999999998876 7755544 4 3444322221100001 0000 00100 0 11 111 11
Q ss_pred CeeEE-EEeecCCCCCCCcccCccEEEecCCCC-C-CHHhHHHHHhCCCCEEEEcCC-CC------CCCeEEeecCcccc
Q 025476 73 EKPVT-VFGVRNPEEIPWAETGAEYVVESTGVF-T-DKDKAAAHLKGGAKKVIISAP-SK------DAPMFVVGVNENEY 142 (252)
Q Consensus 73 G~~i~-v~~~~dp~~~~w~~~~vdiV~e~tg~f-~-~~~~a~~h~~~GakkViis~p-s~------d~p~vV~gVN~~~~ 142 (252)
++.+. +.+ .-...++ .-|+++|++..+ . +.+.+....+.|. ..+++| |- .-|.+++|=+.+.|
T Consensus 77 ~~~v~~vi~-~l~~~L~----~g~iIID~gn~~~~dt~~r~~~l~~~Gi--~fldapVSGG~~gA~~G~~lm~GG~~~a~ 149 (470)
T PTZ00142 77 GEAVDETID-NLLPLLE----KGDIIIDGGNEWYLNTERRIKRCEEKGI--LYLGMGVSGGEEGARYGPSLMPGGNKEAY 149 (470)
T ss_pred hHHHHHHHH-HHHhhCC----CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEcCCCCCCHHHHhcCCEEEEeCCHHHH
Confidence 21110 000 0001121 238999987653 2 3344455666788 567887 31 24688889888777
Q ss_pred CC
Q 025476 143 KP 144 (252)
Q Consensus 143 ~~ 144 (252)
+.
T Consensus 150 ~~ 151 (470)
T PTZ00142 150 DH 151 (470)
T ss_pred HH
Confidence 53
No 252
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.14 E-value=14 Score=34.10 Aligned_cols=30 Identities=13% Similarity=0.493 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|.|.|.+|...++.+...+ .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6889999999999888877665 66666543
No 253
>PRK06988 putative formyltransferase; Provisional
Probab=72.88 E-value=5.3 Score=36.87 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|| |||.+.|.+.+|...++.+.+.+ +++++|-
T Consensus 1 ~~-mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~Vv 32 (312)
T PRK06988 1 MK-PRAVVFAYHNVGVRCLQVLLARG-VDVALVV 32 (312)
T ss_pred CC-cEEEEEeCcHHHHHHHHHHHhCC-CCEEEEE
Confidence 66 79999999999999999998765 7766653
No 254
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=72.55 E-value=14 Score=35.84 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=50.4
Q ss_pred ceEEEEcC----ChhHHHHHHHHHcCCCc--eEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEE
Q 025476 4 VKIGINGF----GRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (252)
Q Consensus 4 ~kv~InG~----GrIGr~v~r~~~~~~~~--~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~ 77 (252)
-+|+|+|. |.+|+.+++++.+.+ | +++.||-- |+. +.|. +
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~-------------------i~G~--~ 53 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGE-------------------ILGV--K 53 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCc-------------------cCCc--c
Confidence 47999996 889999999998765 4 67777631 111 1121 1
Q ss_pred EEeecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 78 v~~~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
++ .+.+++| ..+|+++-+++.....+..+...+.|+|.++|
T Consensus 54 ~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 AY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 11 2223332 25677777777666666666677777777655
No 255
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.48 E-value=5.8 Score=35.38 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+|.|.+|..++..+.+.+ .+++.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999998887665 5655554
No 256
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=72.03 E-value=8.1 Score=35.91 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.6
Q ss_pred cceEEEEcC-ChhHHHHHHHHHcCC
Q 025476 3 KVKIGINGF-GRIGRLVARVILQRD 26 (252)
Q Consensus 3 ~~kv~InG~-GrIGr~v~r~~~~~~ 26 (252)
.+||+|+|. |.+|..++-.+...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 479999997 999999988887665
No 257
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=71.67 E-value=5.9 Score=38.81 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=25.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+||||+|.|.+|..++..+...+ ++++ +.|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence 58999999999999999888775 6654 4455
No 258
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.53 E-value=6.2 Score=36.05 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-|++|.|+|++|+.+++.+...+ .++..++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~ 182 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGA 182 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 58999999999999999988776 6655554
No 259
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=71.41 E-value=15 Score=38.29 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCcc-eEEEEcCChhHHHH-HHHHHcCCCceEEEEeCC
Q 025476 1 MGKV-KIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (252)
Q Consensus 1 m~~~-kv~InG~GrIGr~v-~r~~~~~~~~~ivaind~ 36 (252)
||++ ++.|+|.|..|+.. ++.+.+.+ .++ .+.|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-~~V-~~sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-YSV-SGSDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-CeE-EEECC
Confidence 6654 59999999999987 88888776 664 45664
No 260
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.36 E-value=5.7 Score=37.71 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|+|.|.|+|++|+.+++.+.+.+ .+++.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g-~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN-NDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 48999999999999999887765 7777775
No 261
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=70.87 E-value=19 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=21.3
Q ss_pred eEEEEcCChhHHHHHHHHHc-CCCceEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~-~~~~~ivain 34 (252)
+|.|.|.|.||....+.+.. .+..+++++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 68899999999988776653 3434555553
No 262
>PRK06046 alanine dehydrogenase; Validated
Probab=70.82 E-value=6.7 Score=36.24 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-+++|+|+|..|+.+++++...+.++.+.|.|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 479999999999999999876667999999887
No 263
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=70.52 E-value=6.3 Score=36.13 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=24.5
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
..+|+|+|+|.+|+.+++.+...+.-+ +.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~-V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAE-ITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCE-EEEEeC
Confidence 469999999999999999987654233 344444
No 264
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=70.49 E-value=5.9 Score=37.38 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.+|+|+| +|.+|..+++++...+ .++...
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~ 128 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL 128 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEe
Confidence 6899999 9999999999998765 554333
No 265
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=70.22 E-value=7.3 Score=35.40 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=29.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCC--ceEEEEeCCCCChhhhh
Q 025476 4 VKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT 44 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~--~~ivaind~~~~~~~~a 44 (252)
+|||++|+|.+|+.+++-+.+.+. -+-+-+.++ +.+...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHH
Confidence 599999999999999999987762 234556666 455544
No 266
>PRK07680 late competence protein ComER; Validated
Probab=70.16 E-value=7.2 Score=34.76 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
|||+|+|.|.+|..+++.+.+.+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 38999999999999999987765
No 267
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.12 E-value=10 Score=35.90 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=54.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEE-EEeecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT-VFGVRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~-v~~~~d 83 (252)
.|+|.|+|-+|-...+.+...+.-.|+||. + +++.+.... .+|- +=.+|.++.. +.+ .
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD-~--~~~Kl~~A~----~fGA------------T~~vn~~~~~~vv~--~ 246 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVD-I--NPEKLELAK----KFGA------------THFVNPKEVDDVVE--A 246 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEe-C--CHHHHHHHH----hcCC------------ceeecchhhhhHHH--H
Confidence 589999999999988887766666777774 3 344432222 2221 2224443321 210 0
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
..++ | +.|+|++|||+|.-...+.+=.....+=+-|++
T Consensus 247 i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 247 IVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 0111 2 238999999999876666554433333333444
No 268
>PRK06444 prephenate dehydrogenase; Provisional
Probab=69.93 E-value=6 Score=34.19 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCC
Q 025476 4 VKIGING-FGRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~ 26 (252)
||++|+| .|++|+.+.+.+.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC
Confidence 4899999 6999999988776544
No 269
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.89 E-value=21 Score=31.72 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=49.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
+|.|.|.|.+|..+++.+...+ .+++++... .+...++.+ +|- ...++- ++.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~~---~~~~~~~~~----~g~------------~~~~~~--------~~~ 209 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTG-PDVVLVGRH---SEKLALARR----LGV------------ETVLPD--------EAE 209 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcCC---HHHHHHHHH----cCC------------cEEeCc--------ccc
Confidence 6889999999999988887776 776666432 333322221 210 001110 000
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCC
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Gak 119 (252)
.++ .++|.++||+|.-...+.+..+++.+.+
T Consensus 210 --~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 210 --SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred --ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 123 2799999999864445666677776663
No 270
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.80 E-value=6.6 Score=35.30 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=27.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhhe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY 45 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ay 45 (252)
-||+|+|.|.+|+.++..+.+.+ .+++.+ |. +.+.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~~-d~--~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTLV-DI--KQEQLES 39 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC-CcEEEE-eC--CHHHHHH
Confidence 38999999999999999887775 665544 44 4444433
No 271
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=69.71 E-value=47 Score=29.56 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=50.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
++.|.|.|.+|..+++.+...+ ++++++.+.. +....+-+ +|- ...++.+. .+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~~---~~~~~~~~----~g~------------~~~~~~~~-------~~ 222 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRSG---EHQELARE----LGA------------DWAGDSDD-------LP 222 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCCh---HHHHHHHH----hCC------------cEEeccCc-------cC
Confidence 6788999999999888776665 7877776542 22111110 110 01111100 01
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEE
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkV 121 (252)
+.++|+++++++.....+.+..+++.|.+-+
T Consensus 223 ------~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 223 ------PEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred ------CCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 2368999999887667777888888776433
No 272
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.69 E-value=7 Score=37.15 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=53.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~ 80 (252)
|..-+|.|+|+|.+|+.+++.+.+.+ .++++. |.. .+.. .+ .+.. ++ . .
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g~-D~~--~~~~---~~----~~~~--------~~-~---------~-- 49 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIGV-DKS--LEAL---QS----CPYI--------HE-R---------Y-- 49 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEEE-eCC--cccc---ch----hHHH--------hh-h---------h--
Confidence 55679999999999999999988776 565444 331 1110 00 0000 00 0 0
Q ss_pred ecCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcC
Q 025476 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (252)
Q Consensus 81 ~~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ 125 (252)
..+++.++ .+.|++|-+.|.--..+.....++.|++ +++-
T Consensus 50 ~~~~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 50 LENAEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred cCCcHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 01222221 1568899888876667778888888984 4543
No 273
>PRK06153 hypothetical protein; Provisional
Probab=69.60 E-value=3.5 Score=39.49 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=51.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheee-ee-ecccccCCCcceEEcCCeee-EECCeeEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF-KY-DSVHGQWKHHELKVKDDKTL-LFGEKPVTVFG 80 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll-~y-dS~~G~~~~~~v~~~~~~~l-~i~G~~i~v~~ 80 (252)
.||+|+|.|=+|-.++..+...+=-+|+-|.+-..+...+-+.+ .| ...-|+-. ..+++..+ .+ .++- .|....
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~-~KVevaa~-rl~~in~-~I~~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAP-KKVDYFKS-RYSNMRR-GIVPHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcc-hHHHHHHH-HHHHhCC-eEEEEe
Confidence 58999999999999999998776334444433222333332332 11 12233311 01111111 11 1221 122221
Q ss_pred e-cCCCCCCCcccCccEEEecCCCCCCHHh
Q 025476 81 V-RNPEEIPWAETGAEYVVESTGVFTDKDK 109 (252)
Q Consensus 81 ~-~dp~~~~w~~~~vdiV~e~tg~f~~~~~ 109 (252)
+ -++++++. -.+.|+||+|+..+.++..
T Consensus 254 ~~I~~~n~~~-L~~~DiV~dcvDn~~aR~~ 282 (393)
T PRK06153 254 EYIDEDNVDE-LDGFTFVFVCVDKGSSRKL 282 (393)
T ss_pred ecCCHHHHHH-hcCCCEEEEcCCCHHHHHH
Confidence 1 13333321 1379999999998766543
No 274
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=69.25 E-value=2.1 Score=40.71 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=25.3
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.-||.|+|.|-+|..++..+...+ +.-+.+-|.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G-vg~i~lvD~ 74 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG-VGTLGIVEF 74 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECC
Confidence 468999999999999999987665 544445443
No 275
>PLN02494 adenosylhomocysteinase
Probab=68.70 E-value=7.3 Score=38.30 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-+|+|.|+|.||+.+++.+...+ .++++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999987765 6765553
No 276
>PRK08219 short chain dehydrogenase; Provisional
Probab=68.57 E-value=7.9 Score=32.40 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.9
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
||++++-|.| .|.+|+.+++.+.++ .+++++..
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 5556899999 799999999988776 56666643
No 277
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=68.56 E-value=6.4 Score=37.49 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=27.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheee
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF 47 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll 47 (252)
|||+|+|+|.+|..++..+ ..+ +++++++- +.+.+..+.
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~G-~~VigvD~---d~~kv~~l~ 39 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQN-HEVVALDI---LPSRVAMLN 39 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-HhC-CcEEEEEC---CHHHHHHHH
Confidence 3899999999999998544 454 78766653 455554443
No 278
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=68.50 E-value=15 Score=34.32 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=29.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFIT 39 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~~~~ 39 (252)
|+|-|-| .|-||....+.+.+.+ .++|.+.+++.+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g 36 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNG 36 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCC
Confidence 3788888 9999999999999876 898888887543
No 279
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.37 E-value=7.5 Score=37.40 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
-+|+|.|+|.||+.+++.+...+ .+++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVT 224 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEE
Confidence 48999999999999999887665 676554
No 280
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=68.28 E-value=5.2 Score=36.33 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 6 v~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|+|+|.|.+|..++..+...+-.++ .+.|.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV-~L~Di 30 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDV-VLLDI 30 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEE-EEEeC
Confidence 6899999999998887765541254 44455
No 281
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=68.15 E-value=9.8 Score=30.11 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=53.1
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeec-ccccCCCcceEEcCCeee-EEC-CeeEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDS-VHGQWKHHELKVKDDKTL-LFG-EKPVTVF 79 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS-~~G~~~~~~v~~~~~~~l-~i~-G~~i~v~ 79 (252)
+.||.|.|.|.+|..+++++...+--+++-+.+-..+++.+.+-+-|.+ .-|+.+ .+ +..+ .| .+| +-.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~K-a~--~~~~-~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNK-AE--AAKE-RLQEINPDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBH-HH--HHHH-HHHHHSTTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHH-HH--HHHH-HHHHhcCceeeeee
Confidence 4699999999999999999976652244455554456666655332332 224433 11 1001 11 122 2233333
Q ss_pred eecCC--CCC-CCcccCccEEEecCCCCCCHHhHH
Q 025476 80 GVRNP--EEI-PWAETGAEYVVESTGVFTDKDKAA 111 (252)
Q Consensus 80 ~~~dp--~~~-~w~~~~vdiV~e~tg~f~~~~~a~ 111 (252)
.. +. ++. .+- .+.|+||+|+..+..+....
T Consensus 78 ~~-~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~ 110 (135)
T PF00899_consen 78 PE-KIDEENIEELL-KDYDIVIDCVDSLAARLLLN 110 (135)
T ss_dssp ES-HCSHHHHHHHH-HTSSEEEEESSSHHHHHHHH
T ss_pred ec-ccccccccccc-cCCCEEEEecCCHHHHHHHH
Confidence 21 12 111 010 27899999998865554433
No 282
>PRK08328 hypothetical protein; Provisional
Probab=68.04 E-value=3.6 Score=36.20 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=24.9
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.-||.|+|.|-+|..+++.+...+ +.-+.+-|.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDE 59 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 358999999999999999997665 443444443
No 283
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=67.90 E-value=34 Score=31.45 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=66.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
++.|+|.|.+|...++.+...+ .+++++.+. .+....+++ .+|- + ......+.-.+
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~---~~~~~~~~~---~~Ga----------~-~~i~~~~~~~~------ 238 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMG-HHVTVISSS---DKKREEALE---HLGA----------D-DYLVSSDAAEM------ 238 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CeEEEEeCC---HHHHHHHHH---hcCC----------c-EEecCCChHHH------
Confidence 6789999999999988887665 666666542 222211111 1221 0 11000000001
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCcc-ccCCCCCeEEcCCchhhhHHHHH
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLA 163 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~-~~~~~~~IIS~asCtT~~Lap~l 163 (252)
.... .++|+||||+|...+.+.+-..++.|.+-+.+..++...+ ++.. .+.++..+.....++..-+.-++
T Consensus 239 ~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 310 (357)
T PLN02514 239 QEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQ-----FVTPMLMLGRKVITGSFIGSMKETEEML 310 (357)
T ss_pred HHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCc-----ccHHHHhhCCcEEEEEecCCHHHHHHHH
Confidence 0111 1689999999965555666677777764444433321111 1111 11123445555444444455556
Q ss_pred HHHHhh
Q 025476 164 KVIHDK 169 (252)
Q Consensus 164 k~L~~~ 169 (252)
+.+.+.
T Consensus 311 ~~~~~g 316 (357)
T PLN02514 311 EFCKEK 316 (357)
T ss_pred HHHHhC
Confidence 555543
No 284
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=67.81 E-value=5.7 Score=35.97 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeee
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY 49 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~y 49 (252)
|++|.+|+||+|..+.+.+.+.+ .++|+-. . +.+.+..+-.|
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~yD-~--n~~av~~~~~~ 42 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGYD-V--NQTAVEELKDE 42 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEEc-C--CHHHHHHHHhc
Confidence 48999999999999999998876 7766653 3 55555555443
No 285
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.64 E-value=8.2 Score=35.37 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|||+|+|.|.+|..++..+...+-..-+.+-|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 489999999999999998877663333344444
No 286
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.53 E-value=9.6 Score=34.29 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.||+|+|.|.+|..++..+...+ .+++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence 58999999999999998887665 564444
No 287
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=67.24 E-value=5.9 Score=39.06 Aligned_cols=127 Identities=14% Similarity=0.281 Sum_probs=67.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeee-eeccccc----CCCcc----eEE-c-CCeeeEE-
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-YDSVHGQ----WKHHE----LKV-K-DDKTLLF- 71 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~-ydS~~G~----~~~~~----v~~-~-~~~~l~i- 71 (252)
.+||++|+|.+|+.+++++.+.+ ++++.-| . +.+...-+.+ ... .|. .. .+ ++. + -+ .+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~N-R--t~~k~~~l~~~~~~-~Ga~~~~~a-~s~~e~v~~l~~~d-vIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG-FPISVYN-R--TTSKVDETVERAKK-EGNLPLYGF-KDPEDFVLSIQKPR-SVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC-CeEEEEC-C--CHHHHHHHHHhhhh-cCCcccccC-CCHHHHHhcCCCCC-EEEEE
Confidence 58999999999999999998876 7766555 3 3333322221 000 010 00 00 100 0 11 1110
Q ss_pred --CCeeEE-EEeecCCCCCCCcccCccEEEecCCCC--CCHHhHHHHHhCCCCEEEEcCC-C------CCCCeEEeecCc
Q 025476 72 --GEKPVT-VFGVRNPEEIPWAETGAEYVVESTGVF--TDKDKAAAHLKGGAKKVIISAP-S------KDAPMFVVGVNE 139 (252)
Q Consensus 72 --~G~~i~-v~~~~dp~~~~w~~~~vdiV~e~tg~f--~~~~~a~~h~~~GakkViis~p-s------~d~p~vV~gVN~ 139 (252)
+|+.+. |+.. -++-- ..-|+++|++-.. .+.+.+....+.|+ -.+++| | ..-|++++|=+.
T Consensus 80 v~~~~aV~~Vi~g----l~~~l-~~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 80 VKAGAPVDQTIKA----LSEYM-EPGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred CCCcHHHHHHHHH----HHhhc-CCCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 221110 0000 01111 1348999997764 34455566667788 578888 3 124688899888
Q ss_pred cccCC
Q 025476 140 NEYKP 144 (252)
Q Consensus 140 ~~~~~ 144 (252)
+.|+.
T Consensus 153 ~a~~~ 157 (493)
T PLN02350 153 EAYKN 157 (493)
T ss_pred HHHHH
Confidence 87753
No 288
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.72 E-value=15 Score=36.42 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=23.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-|+.|.|+|++|...++.+...+ ..++ +-|.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~-v~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVR-AFDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 48999999999999999887766 4433 3444
No 289
>PRK07411 hypothetical protein; Validated
Probab=66.71 E-value=3.4 Score=39.38 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=55.3
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC-CChhhhheeeee-ecccccCCCcceEEcCCeee-EEC-CeeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF-ITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~-~~~~~~ayll~y-dS~~G~~~~~~v~~~~~~~l-~i~-G~~i~v 78 (252)
.-||.|+|.|-+|..++..+...+ +.-+.+-|.. .+...+-.-+=| .+.-|+.+ +++... .| .+| +-+|..
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~K---a~~a~~-~l~~~np~v~v~~ 112 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPK---IESAKN-RILEINPYCQVDL 112 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEecccccCcCcccChHHCCCcH---HHHHHH-HHHHHCCCCeEEE
Confidence 368999999999999999987665 5545555542 223333221111 11123322 111111 11 122 112222
Q ss_pred Eee-cCCCCC-C-CcccCccEEEecCCCCCCHHhHH-HHHhCCCC
Q 025476 79 FGV-RNPEEI-P-WAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (252)
Q Consensus 79 ~~~-~dp~~~-~-w~~~~vdiV~e~tg~f~~~~~a~-~h~~~Gak 119 (252)
+.+ -++++. + + .+.|+|++|+..+.++...- ...+.|..
T Consensus 113 ~~~~~~~~~~~~~~--~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 113 YETRLSSENALDIL--APYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EecccCHHhHHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 221 112111 1 2 27899999999987765443 34556653
No 290
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.62 E-value=12 Score=29.78 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.3
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
..+++|.|.|.+|+.+++.+.+.+ .+.+.+.|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 368999999999999999998765 444445444
No 291
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=66.36 E-value=9.6 Score=37.36 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC-CceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~-~~~ivain 34 (252)
|||+|+|.|.+|..++-.+.+.+ +++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 49999999999998877776654 57777774
No 292
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=66.31 E-value=17 Score=34.47 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=48.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhh--eeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~a--yll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
|+.++|.|.+|+.++|.+.+++ .++ .++|.....+.-. .+++ . . .| +.++...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V-~~sD~~~~~~~~~~~~~~~--------------~-~------~g--i~~~~g~ 55 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEV-TVTDLKPNEELEPSMGQLR--------------L-N------EG--SVLHTGL 55 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEE-EEEeCCCCccchhHHHHHh--------------h-c------cC--cEEEecC
Confidence 5789999999999999988876 554 4566421110000 0010 0 0 01 2222223
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
++++++ +.|+|+=+.|.-.+........+.|.
T Consensus 56 ~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 56 HLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred chHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 344442 57999999998655555555666776
No 293
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.18 E-value=17 Score=35.04 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.||+|.|+|+.|+.+++.+.+.+ .++ .+.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence 48999999999999999988877 554 44554
No 294
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.18 E-value=11 Score=34.74 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=50.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
+|.|+|.|.+|....+.+...+ . +++++. . +.+.+..+-+ +|- ...++.+.-... +.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~-~--~~~r~~~a~~----~Ga------------~~~i~~~~~~~~--~~ 251 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG-ASQVVAVD-L--NEDKLALARE----LGA------------TATVNAGDPNAV--EQ 251 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEc-C--CHHHHHHHHH----cCC------------ceEeCCCchhHH--HH
Confidence 6889999999999888777665 5 455553 2 2333322211 110 011111000000 00
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
..+... .++|+||||+|.-.+.+.+-..++.|-+=+.+.
T Consensus 252 i~~~~~--~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 252 VRELTG--GGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHHhC--CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 001111 268999999996555566666777666433343
No 295
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=65.95 E-value=8.9 Score=34.32 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=23.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+|.|.+|..++..+.+.+ .+++.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 48999999999999999887665 4544443
No 296
>PLN02427 UDP-apiose/xylose synthase
Probab=65.58 E-value=9.6 Score=35.43 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||.|-| .|.||+.+++.|.++++.+++++..
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 6999999 8999999999998875578888864
No 297
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=65.15 E-value=10 Score=36.23 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred cceEEEEcC-ChhHHHHHHHHHcCC
Q 025476 3 KVKIGINGF-GRIGRLVARVILQRD 26 (252)
Q Consensus 3 ~~kv~InG~-GrIGr~v~r~~~~~~ 26 (252)
.+||+|+|. |++|..++-.+...+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 479999998 999999998887665
No 298
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=64.68 E-value=14 Score=34.17 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=23.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~-GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||+|+|. |.||..++..+..++-..-+.+-|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 7999998 9999999888876653333344443
No 299
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.68 E-value=33 Score=33.29 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=48.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee-c
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-R 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~-~ 82 (252)
.||.|.|+|..|+.+++.+...+ .++ .+.|. +.+....++. . .| ++++.. .
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~--~~~~~~~~l~-------------------~---~g--i~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CDV-VVADD--NETARHKLIE-------------------V---TG--VADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CEE-EEECC--ChHHHHHHHH-------------------h---cC--cEEEeCCC
Confidence 47999999999999999998777 554 44553 2221111110 0 01 112211 2
Q ss_pred CCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
++++++ +.|.||-+.|.--+........+.|.
T Consensus 68 ~~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 233332 67899998887666555555666676
No 300
>PRK08655 prephenate dehydrogenase; Provisional
Probab=64.56 E-value=9.9 Score=36.72 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=23.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||+|+| +|.+|..+++.+.+.+ .+++..+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 4899998 9999999999987765 5654443
No 301
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=64.37 E-value=10 Score=36.35 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhhe
Q 025476 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTY 45 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ay 45 (252)
.||.|.| +|-||.+.++.+...+ +|+++++.-- .+.+.++.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~ 44 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVE 44 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHH
Confidence 4999999 8999999999876554 5999999653 34544433
No 302
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.15 E-value=20 Score=33.75 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=53.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
-++|.|+|.+|..+++-+-.++.-+|++|. . +.+. |++...+|--+ .-|- + ...+ ++ +|. .
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvD-i--N~~K----f~~ak~fGaTe-----~iNp-~-d~~~---~i-~ev-i 255 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVD-I--NPDK----FEKAKEFGATE-----FINP-K-DLKK---PI-QEV-I 255 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEe-c--CHHH----HHHHHhcCcce-----ecCh-h-hccc---cH-HHH-H
Confidence 579999999999999888777777888874 2 3332 22222233111 1111 1 0001 11 110 0
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC-CEEEE
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA-KKVII 123 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga-kkVii 123 (252)
++-.+.|+||-|||+|.-..+..|-..-..|- +-|+|
T Consensus 256 --~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 256 --IEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred --HHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 11123599999999998877665544333442 23555
No 303
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=63.34 E-value=9.8 Score=36.68 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.6
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|||+|+|+|.+|..++.++.+ + +++++++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D 35 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S-RQVVGFD 35 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C-CEEEEEe
Confidence 4799999999999999888654 4 8877765
No 304
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=63.28 E-value=16 Score=26.70 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.8
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
..+++|.|+|.+|+.+++.+.+..
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999887764
No 305
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=62.93 E-value=8.2 Score=37.76 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+||++|+|.+|..+++++.+.+ ++++..|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeC
Confidence 4899999999999999998876 77665543
No 306
>PRK05865 hypothetical protein; Provisional
Probab=62.61 E-value=20 Score=37.77 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=25.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||.|.| .|.||+.+++.+.+++ .+++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 3899999 7999999999998876 67776654
No 307
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=62.42 E-value=27 Score=32.26 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=39.6
Q ss_pred CccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC-CCCCCeEEeecCccccCCCCCeEEcCCchh
Q 025476 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDAPMFVVGVNENEYKPELNIVSNASCTT 156 (252)
Q Consensus 93 ~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p-s~d~p~vV~gVN~~~~~~~~~IIS~asCtT 156 (252)
+-|++|..+..-...+-.+.|++-|| +|+++. .+|..+-|.-+|+=.+- +.++|+.++-.|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it 291 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDIT 291 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccc
Confidence 45666666666666778899999999 999887 45655555555532221 245666655544
No 308
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=62.33 E-value=13 Score=34.82 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|||+|-|..|+.+++++.+.+ ++++++.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG-~~v~~~d 32 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG-YKVIVLD 32 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 48999999999999999888776 8876664
No 309
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=62.02 E-value=22 Score=32.45 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=22.9
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 6 v~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|+|+|.|.+|..++-.+...+-..-+.+-|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5899999999999888877664443445554
No 310
>PRK07236 hypothetical protein; Provisional
Probab=61.80 E-value=12 Score=34.75 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=26.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||.++|.|+|-|..|-..+..|...+ ++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG-WDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC-CCEEEEe
Confidence 67789999999999999888887654 6655553
No 311
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=61.72 E-value=26 Score=31.51 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEc-CChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 8 ING-FGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 8 InG-~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|-| .|.+|+.+.+.|.++++..-|-+-|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 456 89999999999999886333334343
No 312
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.55 E-value=13 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=24.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-||||+|.|.||+.++..+...+ ++++ +.|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~-l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVV-AWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence 47999999999999998887665 7754 4555
No 313
>PLN02240 UDP-glucose 4-epimerase
Probab=61.50 E-value=14 Score=33.49 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
..||.|.| .|.+|+.+++.+.+++ .+++++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 46999999 7999999999998876 78777753
No 314
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=61.15 E-value=13 Score=31.38 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+|+|+|+|.-|+.++.+|.+++ ++++.-..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 58999999999999999999887 77654443
No 315
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=61.05 E-value=11 Score=35.68 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||+.+.|.|.+||.++-.++.+.+.+++.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999776656555558877776
No 316
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=60.73 E-value=12 Score=35.52 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=33.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhhee
Q 025476 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYM 46 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayl 46 (252)
.|+.|.| +|-||.+.+..+.+.| .|+++++.--. +++.++-.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~-n~~~l~~q 45 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGK-NVELLAEQ 45 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCC-cHHHHHHH
Confidence 4999999 8999999999988776 49999997542 55555443
No 317
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=60.65 E-value=34 Score=29.86 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=23.7
Q ss_pred CcceEEEEc-CChhHHHHHHHHHcCCCce
Q 025476 2 GKVKIGING-FGRIGRLVARVILQRDDVE 29 (252)
Q Consensus 2 ~~~kv~InG-~GrIGr~v~r~~~~~~~~~ 29 (252)
..+..-|.| +|..|+.+++.+.+.+.|.
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FS 45 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFS 45 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccce
Confidence 346778999 8999999999999998753
No 318
>PRK06545 prephenate dehydrogenase; Validated
Probab=60.65 E-value=11 Score=35.21 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 025476 5 KIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~ 26 (252)
+|+|+|+|.||..+++++...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 7999999999999999997765
No 319
>PRK08223 hypothetical protein; Validated
Probab=60.58 E-value=7.8 Score=35.58 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC-CCChhhhheeeee-ecccccCCCcceEEcCCeee-EECC-eeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTL-LFGE-KPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~-~~~~~~~ayll~y-dS~~G~~~~~~v~~~~~~~l-~i~G-~~i~v 78 (252)
.-||.|+|.|-+|..++..+...+ +.-+.+-|. ..++..+-.-+-| .+.-|+.+ +++..+ .+ .+|- -+|..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~K---ve~a~~-~l~~iNP~v~V~~ 101 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPK---AEVLAE-MVRDINPELEIRA 101 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCCcchhccccccCcChhHCCCcH---HHHHHH-HHHHHCCCCEEEE
Confidence 358999999999999999887665 433344443 2333333332222 22244433 111111 11 2231 23333
Q ss_pred Eee-cCCCCCCCcccCccEEEecCCCC--CCHHhH-HHHHhCCC
Q 025476 79 FGV-RNPEEIPWAETGAEYVVESTGVF--TDKDKA-AAHLKGGA 118 (252)
Q Consensus 79 ~~~-~dp~~~~w~~~~vdiV~e~tg~f--~~~~~a-~~h~~~Ga 118 (252)
+.+ -++++.+.--.+.|+|+||+..| .++... ....+.|.
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~i 145 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGI 145 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCC
Confidence 321 12333221113789999999876 333222 23445565
No 320
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=60.56 E-value=13 Score=33.92 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.6
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
.|||+|+|.|.||..+.-.+.+.+ .+++.+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv 31 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLI 31 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEE
Confidence 479999999999998887776654 444333
No 321
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=60.39 E-value=27 Score=31.93 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|.|.|.|.+|...++.+...+ .+++++.
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~ 197 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMG-AAVVAID 197 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEc
Confidence 6899999999999988887766 6766664
No 322
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.11 E-value=21 Score=34.67 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.+|.|.|+|..|+.+++.+...+ .++. +.|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLR-VADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEE-EEcC
Confidence 37999999999999999988877 6654 4553
No 323
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=60.07 E-value=7.7 Score=33.28 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=24.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.-||.|+|.|-+|..+++++...+ +.-+.+-|
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G-Vg~i~lvD 50 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG-IDSITIVD 50 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEE
Confidence 468999999999999999997665 55444443
No 324
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=60.06 E-value=13 Score=35.59 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-+|+|+|+|.+|+.+++.+...+-.+++.+|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~ 211 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIAN 211 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999999999876524454444
No 325
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=60.05 E-value=11 Score=37.78 Aligned_cols=36 Identities=19% Similarity=0.545 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhh
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ 43 (252)
.+|-|.|+||+|+.+.|.+.+.+ .++++|.. |++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~---d~~~v 436 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLER---DISAV 436 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEEC---CHHHH
Confidence 57899999999999999987765 78777753 45544
No 326
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.93 E-value=22 Score=33.93 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=48.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEe-ecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~-~~d 83 (252)
-|.|+|.|.+|+.++|.+.+.+ .++ .+.|..........| +.+. -| +.+.. ..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v-~~~D~~~~~~~~~~l---------------~~~~------~g--~~~~~~~~~ 62 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPF-AVMDSREQPPGLDTL---------------AREF------PD--VELRCGGFD 62 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeE-EEEeCCCCchhHHHH---------------Hhhc------CC--cEEEeCCCC
Confidence 5789999999999999988887 554 455542111110000 0000 01 22221 234
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
+++++ +.|+|+-+.|.-.+.+......+.|.
T Consensus 63 ~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 63 CELLV----QASEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred hHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 55443 57899998887666555555566666
No 327
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=59.74 E-value=15 Score=33.03 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=26.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|||-|.| .|.+|..+.+.+.+++ +++++++..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSRS 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch
Confidence 5999999 7999999999887755 888888543
No 328
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.72 E-value=11 Score=38.04 Aligned_cols=30 Identities=33% Similarity=0.764 Sum_probs=25.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+|-|.|+||+|+.+.|.+.+++ ++++.|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID 430 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLD 430 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEE
Confidence 47889999999999999998775 7777774
No 329
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.47 E-value=20 Score=28.62 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=52.2
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
-++.|+|.|-+||.++.++.+.+--++..+|-. .+....|.+ .+ ++..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt---~~ra~~l~~-------------------~~--~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT---PERAEALAE-------------------EF--GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS---HHHHHHHHH-------------------HH--TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC---HHHHHHHHH-------------------Hc--CccccceeeHHH
Confidence 589999999999999999988862336556642 333322221 00 222233322222
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCC--EEEEcCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK--KVIISAP 126 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Gak--kViis~p 126 (252)
..+ .....|+|+.||+..... --+.+++.+-+ +++++-.
T Consensus 69 ~~~---~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 69 LEE---ALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp HCH---HHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES-
T ss_pred HHH---HHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceeccc
Confidence 221 113689999999976442 12234544433 4788654
No 330
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=58.24 E-value=16 Score=33.44 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=27.3
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+||-|-| .|.||+.+++.+.+++ .+++++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 36999999 8999999999998886 78888754
No 331
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.95 E-value=19 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.8
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
..++-|.| .|.+|+.+++.+.+++ .+++.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 46899999 7999999999998876 66655553
No 332
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=57.45 E-value=9.3 Score=37.22 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.2
Q ss_pred cceEEEEcC-ChhHHHHHHHHHcC
Q 025476 3 KVKIGINGF-GRIGRLVARVILQR 25 (252)
Q Consensus 3 ~~kv~InG~-GrIGr~v~r~~~~~ 25 (252)
.+||+|+|. |.+|..++..+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 379999998 99999999888765
No 333
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.35 E-value=12 Score=36.58 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
||..+|+|+|+|..|-..+|.+...+ ++++..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g-~~v~vf 35 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG-HEVVVF 35 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC-CCceEE
Confidence 45789999999999999999887653 444433
No 334
>PRK14851 hypothetical protein; Provisional
Probab=56.74 E-value=5.6 Score=40.80 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=50.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC-CChhhhheeeee-ecccccCCCcceEEcCCee-eEEC-CeeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF-ITTDYMTYMFKY-DSVHGQWKHHELKVKDDKT-LLFG-EKPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~-~~~~~~ayll~y-dS~~G~~~~~~v~~~~~~~-l~i~-G~~i~v 78 (252)
.-||+|+|.|-+|..++..+...+ +.-..|.|.. .++..+-.-+-| .+.-|+.+ -+ +..+ . ..+| +-+|..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~K-v~--v~~~-~l~~inP~~~I~~ 117 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFDQFEPVNVNRQFGARVPSFGRPK-LA--VMKE-QALSINPFLEITP 117 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCCEecccccccCcCcChhhCCCHH-HH--HHHH-HHHHhCCCCeEEE
Confidence 368999999999999999887555 3333343321 223333222212 23345443 11 1111 1 1233 234455
Q ss_pred Eeec-CCCCCCCcccCccEEEecCCCCC
Q 025476 79 FGVR-NPEEIPWAETGAEYVVESTGVFT 105 (252)
Q Consensus 79 ~~~~-dp~~~~w~~~~vdiV~e~tg~f~ 105 (252)
+.+. ++++++---.++|+|+||+..|.
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECCCCCc
Confidence 4322 23333211138999999998763
No 335
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=56.69 E-value=15 Score=34.21 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=34.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHHc------CCCceEEEEeCCCC---Chhhhheeeeeec
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDPFI---TTDYMTYMFKYDS 51 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~------~~~~~ivaind~~~---~~~~~ayll~ydS 51 (252)
|+.++|+|+|.|-||..-+..+.+ .|..++..+.|-+. ..+-.|-||+-|+
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~ 60 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDL 60 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeeccc
Confidence 566899999999999977765554 34567777777652 1233455666443
No 336
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=56.24 E-value=22 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=25.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.||.|.|.|++|+..++.+...+ .+.+...+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred eEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 69999999999999999998877 77777655
No 337
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=56.13 E-value=16 Score=32.51 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.0
Q ss_pred EEEEcC-ChhHHHHHHHHHcCC
Q 025476 6 IGINGF-GRIGRLVARVILQRD 26 (252)
Q Consensus 6 v~InG~-GrIGr~v~r~~~~~~ 26 (252)
|+|+|. |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 589998 999999999887665
No 338
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=55.65 E-value=18 Score=34.22 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-+|.|+|+|++|+.+++.+...+ .+++.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999998776 6655554
No 339
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=55.56 E-value=41 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=24.7
Q ss_pred ceEEEEcCChhHHH-HHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~-v~r~~~~~~~~~ivaind~ 36 (252)
.||.|+|.|..|+. ++|.+.+.+ .++ .+.|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECC
Confidence 47999999999999 799888876 664 45554
No 340
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=55.44 E-value=32 Score=31.93 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCC
Q 025476 5 KIGINGF-GRIGRLVARVILQRD 26 (252)
Q Consensus 5 kv~InG~-GrIGr~v~r~~~~~~ 26 (252)
||+|.|. |++|..++..+...+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~ 23 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGR 23 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhcc
Confidence 6899998 999999998887644
No 341
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=55.27 E-value=17 Score=33.67 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=26.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|+..||||+|.|.+|+-++..+.. .+++++ +.|+
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~-l~D~ 34 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVV-LKDI 34 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceE-EEeC
Confidence 456799999999999999887766 446643 4455
No 342
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=55.21 E-value=67 Score=29.97 Aligned_cols=133 Identities=10% Similarity=0.123 Sum_probs=65.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
+|.|.|.|.+|....+.+...+ .+++++... +......+-+ +|- .-.++.+.. +..
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~--~~~~~~~a~~----lGa------------~~~i~~~~~-----~~v 236 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG-LRVTVISRS--SEKEREAIDR----LGA------------DSFLVTTDS-----QKM 236 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC-CeEEEEeCC--hHHhHHHHHh----CCC------------cEEEcCcCH-----HHH
Confidence 6889999999999988887766 676666432 1110101101 110 111221110 000
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccc-cCCCCCeEEcCCchhhhHHHHH
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENE-YKPELNIVSNASCTTNCLAPLA 163 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~-~~~~~~IIS~asCtT~~Lap~l 163 (252)
.+.. .++|+|+||+|.-...+.+-..++.|-+-+.+..+..+.+ ++... +..+..|...-.++...+.-++
T Consensus 237 ~~~~---~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 308 (375)
T PLN02178 237 KEAV---GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLD-----LPIFPLVLGRKMVGGSQIGGMKETQEML 308 (375)
T ss_pred HHhh---CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCc-----cCHHHHHhCCeEEEEeCccCHHHHHHHH
Confidence 0011 1689999999975445555666666653343433322111 11111 1123345444444555666677
Q ss_pred HHHHhh
Q 025476 164 KVIHDK 169 (252)
Q Consensus 164 k~L~~~ 169 (252)
+.+.+.
T Consensus 309 ~l~~~g 314 (375)
T PLN02178 309 EFCAKH 314 (375)
T ss_pred HHHHhC
Confidence 766543
No 343
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=55.17 E-value=20 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=24.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+||+|+|.|.+|..++..+...+..+ |.+-|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 59999999999999999887765335 444454
No 344
>PRK09126 hypothetical protein; Provisional
Probab=55.06 E-value=17 Score=33.53 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||...|.|+|-|..|-..+..+...+ ++++.+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G-~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSG-LKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCC-CcEEEEe
Confidence 88899999999999999888887654 7766664
No 345
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=54.87 E-value=21 Score=33.32 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.7
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+||.|-| .|.||+.+++.|.+.+ .+++++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 47999999 7999999999998876 7777775
No 346
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.70 E-value=43 Score=32.01 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=50.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCC-ceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEee-
Q 025476 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV- 81 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~-~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~- 81 (252)
.||.|+|.|..|+..++.+....+ .++ .+.|....+... + .|. .| +.++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v-~~~D~~~~~~~~----------------------~-~l~-~g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTV-KVIDTRETPPGQ----------------------E-QLP-ED--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeE-EEEeCCCCchhH----------------------H-Hhh-cC--CEEEeCC
Confidence 479999999999999998887753 554 355542111000 0 110 01 222222
Q ss_pred cCCCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 82 ~dp~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
.++++++ +.|+|+-+.|.-.+.+......+.|.
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3455553 57899999998766665666666776
No 347
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=54.70 E-value=16 Score=36.28 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=25.8
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
-++-|.|+|++|+.++|.+.+++ .+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 36789999999999999998776 77777754
No 348
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=54.04 E-value=35 Score=30.75 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=51.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
+|.|.|.|.+|....+.+...+ .+++++... .+....+-+ +|- .-.++.++-.+. +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~---~~~~~~~~~----~g~------------~~~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG-FRTVAISRG---SDKADLARK----LGA------------HHYIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeCC---hHHHHHHHH----cCC------------cEEecCCCccHH--HHH
Confidence 6889999999999988887766 677666543 222222211 110 111221110010 001
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEc
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis 124 (252)
..|+ ++|+++|++|.-...+.+..++..+.+-+.+.
T Consensus 224 --~~~~--~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 224 --QELG--GAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred --HhcC--CCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 1122 68999999875445566677777666434343
No 349
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=53.83 E-value=1.4e+02 Score=28.06 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+|.|.|.|.||...++.+...+ .+++.+.|.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG-AAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence 6778899999999988887665 665555554
No 350
>PLN00198 anthocyanidin reductase; Provisional
Probab=53.72 E-value=22 Score=32.26 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=25.7
Q ss_pred CcceEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 025476 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 2 ~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivai 33 (252)
+..+|.|-| .|.||+.+++.+.+.+ .+++++
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~ 39 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTT 39 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 447899999 8999999999998876 676554
No 351
>PRK10083 putative oxidoreductase; Provisional
Probab=53.58 E-value=39 Score=30.33 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHc-CCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQ-RDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~-~~~~~ivaind~ 36 (252)
+|.|+|.|.+|...++.+.. .+ .+.+.+.+.
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~ 194 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYN-VKAVIVADR 194 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 68899999999998887764 35 654444443
No 352
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.39 E-value=49 Score=31.37 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-++.|.|.|++|+..++.+.+.+ .+++ +.|.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~-~~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVT-VNDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 47899999999999999988776 5544 4453
No 353
>PLN02740 Alcohol dehydrogenase-like
Probab=53.34 E-value=23 Score=32.87 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
+|.|.|.|.+|...++.+...+ . +++++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 6889999999999998887776 5 465553
No 354
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=53.32 E-value=20 Score=32.99 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=67.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcce-E-EcCCeeeEE----CCeeE-
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL-K-VKDDKTLLF----GEKPV- 76 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v-~-~~~~~~l~i----~G~~i- 76 (252)
+|||.+|+|.+|..+++++.+.+ +++..-|- +++..+-+++ .+|--...+. + +++- .++| |+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r---~~~ka~~~~~---~~Ga~~a~s~~eaa~~a-DvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNR---TPEKAAELLA---AAGATVAASPAEAAAEA-DVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeC---ChhhhhHHHH---HcCCcccCCHHHHHHhC-CEEEEecCCHHHHH
Confidence 48999999999999999999887 77655553 3333111221 1121100000 0 0111 1111 22111
Q ss_pred EEEeecCCCCCCCcccCccEEEecCCCC--CCHHhHHHHHhCCCCEEEEcCC-C-------CCCCeEEeecCccccCC
Q 025476 77 TVFGVRNPEEIPWAETGAEYVVESTGVF--TDKDKAAAHLKGGAKKVIISAP-S-------KDAPMFVVGVNENEYKP 144 (252)
Q Consensus 77 ~v~~~~dp~~~~w~~~~vdiV~e~tg~f--~~~~~a~~h~~~GakkViis~p-s-------~d~p~vV~gVN~~~~~~ 144 (252)
.|.. .+-.-+++- ..-.+++|++-.. .+++.+..+.+.|. -.+++| | ..+.+|+.|=-.+.|+.
T Consensus 73 ~V~~-g~~g~~~~~-~~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r 146 (286)
T COG2084 73 AVLF-GENGLLEGL-KPGAIVIDMSTISPETARELAAALAAKGL--EFLDAPVSGGVPGAAAGTLTIMVGGDAEAFER 146 (286)
T ss_pred HHHh-CccchhhcC-CCCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEecCccCCchhhhhCceEEEeCCCHHHHHH
Confidence 1110 000011111 1236888887643 34466666777887 568998 3 23778888887777753
No 355
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.02 E-value=1e+02 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-||.|+|-|.+|..-++.+.+.+ .+++.|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 48999999999999889888876 5655553
No 356
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=52.98 E-value=24 Score=30.56 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
++|.|.| .|.||+.+++.+.+.+ .+++++.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~ 48 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG-FAVKAGV 48 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 5899999 7999999999998775 6776654
No 357
>PRK07326 short chain dehydrogenase; Provisional
Probab=52.94 E-value=25 Score=29.64 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=24.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++-|.| .|.||+.+++.+.+.+ .+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g-~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG-YKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC-CEEEEee
Confidence 4799999 7999999999998765 7777664
No 358
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.67 E-value=21 Score=34.33 Aligned_cols=32 Identities=19% Similarity=0.514 Sum_probs=27.7
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.|||-|-| .|.||+.+++.+.+++ .+++++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 47999999 8999999999999886 78888764
No 359
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.59 E-value=32 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|+.|+|.|.+|-.++..+.+.+ .+++-|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEE
Confidence 6899999999999999998776 454444
No 360
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=52.53 E-value=84 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
+|.|.|.|.+|...++.+...+ .+ ++++.
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~ 208 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAG-ASKIIAVD 208 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6889999999999888877665 54 66653
No 361
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=52.38 E-value=24 Score=32.45 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
+|.|+|.|.+|...++.+...+ .+ ++++.
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~ 218 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG-CTTIIAVD 218 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6889999999999888887776 64 44443
No 362
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.25 E-value=30 Score=33.07 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=24.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||.|+|.|..|+..++.+...+ .++ .+.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V-~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEV-VVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEE-EEECC
Confidence 7899999999999999888877 554 44553
No 363
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.08 E-value=27 Score=32.13 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
+|.|.|.|.+|...++.+...+ . +++++.
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~ 219 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRG-ASRIIGVD 219 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6889999999999988887665 5 566664
No 364
>PRK14852 hypothetical protein; Provisional
Probab=51.91 E-value=15 Score=39.31 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=49.6
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC-CChhhhheeeee-ecccccCCCcceEEcCCeee-EEC-CeeEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF-ITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~-~~~~~~ayll~y-dS~~G~~~~~~v~~~~~~~l-~i~-G~~i~v 78 (252)
.-||+|+|.|=+|..++..+...+ +.-+.|.|.. .+...+-.-+-| .+.-|+.+ +++... .+ .+| .-+|.+
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG-VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~K---aevaa~-~l~~INP~v~I~~ 406 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG-IGNFNLADFDAYSPVNLNRQYGASIASFGRGK---LDVMTE-RALSVNPFLDIRS 406 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC-CCeEEEEcCCEecccccccccCCChhhCCChH---HHHHHH-HHHHHCCCCeEEE
Confidence 358999999999999999887655 4434444431 122222121111 12223322 111111 11 233 234555
Q ss_pred Eeec-CCCCCC-CcccCccEEEecCCCCCC
Q 025476 79 FGVR-NPEEIP-WAETGAEYVVESTGVFTD 106 (252)
Q Consensus 79 ~~~~-dp~~~~-w~~~~vdiV~e~tg~f~~ 106 (252)
+.+. ++++++ | -.++|+|+||+..|..
T Consensus 407 ~~~~I~~en~~~f-l~~~DiVVDa~D~~~~ 435 (989)
T PRK14852 407 FPEGVAAETIDAF-LKDVDLLVDGIDFFAL 435 (989)
T ss_pred EecCCCHHHHHHH-hhCCCEEEECCCCccH
Confidence 5321 233332 1 1389999999998754
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.37 E-value=24 Score=33.47 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++-|.|+|++|+.+++.+.+.+ .+++.|.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~-~~v~vid 261 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEG-YSVKLIE 261 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 58999999999999999887765 6777774
No 366
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=51.29 E-value=25 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.9
Q ss_pred cceEEEEcC-ChhHHHHHHHHHcCC
Q 025476 3 KVKIGINGF-GRIGRLVARVILQRD 26 (252)
Q Consensus 3 ~~kv~InG~-GrIGr~v~r~~~~~~ 26 (252)
.+||+|.|. |.+|..++..+...+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCc
Confidence 479999996 999999999887754
No 367
>PLN02778 3,5-epimerase/4-reductase
Probab=51.15 E-value=25 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=23.8
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEE
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELV 31 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~iv 31 (252)
+|||-|-| .|.||+.+++.+.+++ .+++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 47999999 8999999999998876 5554
No 368
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=51.05 E-value=24 Score=31.71 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||.|.| .|.||+.+++.+.+.+ .+++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 4899999 7999999999998775 7777774
No 369
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=50.74 E-value=22 Score=38.24 Aligned_cols=142 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc------eEEEEeCCCCChhhhheeeee-ecccccCCCcc-----eEEcCCeeeEEC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTYMFKY-DSVHGQWKHHE-----LKVKDDKTLLFG 72 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~------~ivaind~~~~~~~~ayll~y-dS~~G~~~~~~-----v~~~~~~~l~i~ 72 (252)
||.|+|.|-+|..+++++...+ + +|+.+.+-.++...+-.-|=| ...-|+.+ .. ++.-+. .+.+.
T Consensus 421 kVlvvGaGGlG~e~lknLal~G-v~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~K-a~vaa~~l~~~Np-~v~I~ 497 (1008)
T TIGR01408 421 NIFLVGCGAIGCEMLKNFALMG-VGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPK-SYTAADATLKINP-QIKID 497 (1008)
T ss_pred cEEEECCChHHHHHHHHHHHhC-CCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHH-HHHHHHHHHHHCC-CCEEE
Q ss_pred CeeEEEEeecCCCCCC---CcccCccEEEecCCCCCCHHhHH-HHHhCCCCEEEEcCCCCC----CCeEEeecCccccCC
Q 025476 73 EKPVTVFGVRNPEEIP---WAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAPSKD----APMFVVGVNENEYKP 144 (252)
Q Consensus 73 G~~i~v~~~~dp~~~~---w~~~~vdiV~e~tg~f~~~~~a~-~h~~~GakkViis~ps~d----~p~vV~gVN~~~~~~ 144 (252)
-..-++..+.+ .-++ |. +.|+|++|...+.++.+.- ...+.+. -+|.+.+.. +-+++++.- +.|..
T Consensus 498 ~~~~~v~~~~e-~i~~~~f~~--~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~t-e~y~~ 571 (1008)
T TIGR01408 498 AHQNRVGPETE-TIFNDEFYE--KLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHLT-ESYGS 571 (1008)
T ss_pred EEEeecChhhh-hhhhHHHhh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCCc-CCCCC
Q ss_pred --CCCeEEcCCch
Q 025476 145 --ELNIVSNASCT 155 (252)
Q Consensus 145 --~~~IIS~asCt 155 (252)
...=.+.|.||
T Consensus 572 ~~d~~~~~~P~Ct 584 (1008)
T TIGR01408 572 SRDPPEKEIPFCT 584 (1008)
T ss_pred CCCCCCCCCCccc
No 370
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=50.71 E-value=24 Score=30.35 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=25.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
++|.|.| +|.+|+.+++.+.+++ .+++++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEe
Confidence 3788999 8999999999999885 77766654
No 371
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=50.65 E-value=19 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=22.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
++|||+|+|-||--++-+...+ +++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 8999999999998765544444 4887776
No 372
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=50.61 E-value=30 Score=31.01 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+|-|-| .|.||+.+++.+.+++ .+++++.+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 5899999 8999999999998876 67766544
No 373
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.53 E-value=88 Score=29.80 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=49.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
.++.|.|.|.+|+..+|.+.+++ .++++. |.....+.... . +. . ..| +.++....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~-d~~~~~~~~~~---------------l--~~---~-~~g--i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAY-DAELKPERVAQ---------------I--GK---M-FDG--LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eCCCCchhHHH---------------H--hh---c-cCC--cEEEeCCC
Confidence 48999999999999999988887 665544 43111110000 0 00 0 011 22221121
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
++. .+ .+.|+|+-+.|.-.+......+.+.|.
T Consensus 61 ~~~-~~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 61 KDA-LD--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CHH-HH--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 221 11 267999999998766666666666676
No 374
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=50.37 E-value=31 Score=31.27 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=21.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivai 33 (252)
+|.|.|.|.+|....+.+...+ .+ ++++
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~ 191 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG-AKSVTAI 191 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 7889999999999888877665 65 3444
No 375
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=50.25 E-value=27 Score=32.94 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=26.7
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+||.|.| .|.||+.+++.+.+++ .+++++.-
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 46999999 7999999999998876 77776653
No 376
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.97 E-value=26 Score=31.96 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=21.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~iv 31 (252)
|||+|+|.|.+|..+...+.+.+ .++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 38999999999999998887665 4443
No 377
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=49.92 E-value=26 Score=32.37 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=27.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-++||+|+|..|+.+++++.....++-+.|.|.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r 161 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR 161 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 479999999999999998866555777777776
No 378
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=49.89 E-value=96 Score=27.93 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=47.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
++.|.|.|.+|+.+++.+...+ .+++.+... .+...++-+ +| - .-.++.+.... .
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~~---~~~~~~~~~----~g-----------~-~~vi~~~~~~~-----~ 226 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSRS---PSKKEDALK----LG-----------A-DEFIATKDPEA-----M 226 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcCC---HHHHHHHHH----cC-----------C-cEEecCcchhh-----h
Confidence 6788899999998888776665 676666432 222212111 11 0 11111110000 0
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga 118 (252)
... + .++|+|++|+|.-...+.+..+++.+.
T Consensus 227 ~~~-~--~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 227 KKA-A--GSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhc-c--CCceEEEECCCCcchHHHHHHHhcCCC
Confidence 011 1 379999999997644566677777655
No 379
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=49.81 E-value=59 Score=28.92 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=24.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++.|.|.|-+|+.+++++.+.+ .++...|
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~ 147 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIAN 147 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 47899999999999999998776 5665554
No 380
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=49.57 E-value=21 Score=34.06 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=20.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
.+|||+|||-.|+..++-+...+
T Consensus 53 l~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcC
Confidence 79999999999999999887776
No 381
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=49.56 E-value=75 Score=29.94 Aligned_cols=92 Identities=14% Similarity=0.299 Sum_probs=56.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
+|+|.|+|=+|....+.+...+ .+++++.-. .+......+ . +. ...++++ |+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~----l-----------GA-d~~i~~~--------~~ 220 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKK----L-----------GA-DHVINSS--------DS 220 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHH----h-----------CC-cEEEEcC--------Cc
Confidence 7999999988888888776666 888888653 332211110 0 11 2223221 12
Q ss_pred CCCC-CcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCC
Q 025476 85 EEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (252)
Q Consensus 85 ~~~~-w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~p 126 (252)
+.++ ..+ -+|+++++.+ ..+.+.+-..++.|-+=|++-.|
T Consensus 221 ~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 221 DALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1111 111 2899999999 77888888888877655666555
No 382
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=49.44 E-value=20 Score=34.77 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
||+..||++|+|-+|+.++.+..+++ +.+.+-|-.
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~G-~~VavyNRt 35 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADHG-YTVAVYNRT 35 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhcC-ceEEEEeCC
Confidence 77889999999999999999888776 887777764
No 383
>PLN02206 UDP-glucuronate decarboxylase
Probab=49.40 E-value=25 Score=33.93 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=27.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+||-|-| .|.||+.+++.|.+++ .+++++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 7999999 8999999999998886 77777754
No 384
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=48.83 E-value=26 Score=33.60 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
.+|+|+|.|.+|+.+++.+...+ + +++.++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~ 213 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVAN 213 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEe
Confidence 58999999999999999988765 5 444444
No 385
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=48.15 E-value=69 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|.|.|-+|+.+++.+...+ ++++++..
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~ 194 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMG-FETVAITR 194 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6889999889999888877665 67766654
No 386
>PRK07023 short chain dehydrogenase; Provisional
Probab=47.74 E-value=32 Score=29.33 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+++-|.| .|.||+.+++.+.+.+ .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 3899999 7999999999988776 6766553
No 387
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.58 E-value=61 Score=29.76 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=22.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
+|.|.|.|.+|...++.+...+ . .++++.
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 7889999999999888777666 5 455554
No 388
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=47.02 E-value=36 Score=30.22 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
+|-|+|.|.+|...++.+...+ ..++++... .+...++-+ +|. + . .++.+.-.. .+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s---~~~~~~~~~----~g~----------~-~-~~~~~~~~~-~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIK---EEKLELAKE----LGA----------D-E-VLNSLDDSP-KDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CEEEEEcCC---HHHHHHHHH----hCC----------C-E-EEcCCCcCH-HHH-H
Confidence 6778899999999888877665 776666432 232222211 110 0 1 011000000 000 0
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEE
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkVii 123 (252)
...+. .++|+|+||.|.-...+.+..+++.|.+-+.+
T Consensus 226 ~~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGLG--GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhcC--CCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00111 37899999998644556677788877643333
No 389
>PLN02827 Alcohol dehydrogenase-like
Probab=46.77 E-value=34 Score=31.84 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=21.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivai 33 (252)
+|.|.|.|.+|...++.+...+ .. ++++
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6889999999999988877666 54 4444
No 390
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=46.73 E-value=32 Score=34.54 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=26.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 2 ~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+..||||+|-|..|+.+++++.+.+ ++++.+.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~lG-~~Vi~ld 52 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQMG-IKVKVLD 52 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 4579999999999999999998776 7777663
No 391
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.51 E-value=37 Score=28.43 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
..++-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAG-ADVVVHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 35899999 8999999999998876 5554433
No 392
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=46.45 E-value=35 Score=28.86 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.2
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
..++.|.| .|.+|+.+++.+.+++ .+++.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 45799999 8999999999998876 67766654
No 393
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.33 E-value=35 Score=27.02 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=23.1
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 6 v~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|+|+|.|.||..++..+.+.+ .++..+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-HDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-CEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCC-CceEEEEcc
Confidence 689999999999998887744 665555543
No 394
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.01 E-value=86 Score=28.13 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=64.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
.|.|.|.|.+|..+.+.+...+ .+ ++++... .+.. .+.+ .+|- .-.++.+..... ++
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~---~~~~-~~~~---~~ga------------~~v~~~~~~~~~--~~ 228 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRH---EDRQ-ALAR---EFGA------------TDIVAERGEEAV--AR 228 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECCC---HHHH-HHHH---HcCC------------ceEecCCcccHH--HH
Confidence 5778899999999888877665 54 5555432 1111 1110 0110 011111110000 00
Q ss_pred CCCCCCcccCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCc-cccCCCCCeEEcCCchhhhHHHH
Q 025476 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNE-NEYKPELNIVSNASCTTNCLAPL 162 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~-~~~~~~~~IIS~asCtT~~Lap~ 162 (252)
..++. ...++|+++||+|.-...+.+..+++.+..-++++.++... .+|. ..+..+..+...+.+.-..+..+
T Consensus 229 i~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (345)
T cd08287 229 VRELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGV-----ELDVRELFFRNVGLAGGPAPVRRYLPEL 302 (345)
T ss_pred HHHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCC-----ccCHHHHHhcceEEEEecCCcHHHHHHH
Confidence 00011 11268999999986555566777777665333333332111 1122 22222344555555554555555
Q ss_pred HHHHH
Q 025476 163 AKVIH 167 (252)
Q Consensus 163 lk~L~ 167 (252)
++.+.
T Consensus 303 ~~~~~ 307 (345)
T cd08287 303 LDDVL 307 (345)
T ss_pred HHHHH
Confidence 55443
No 395
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=45.94 E-value=37 Score=29.76 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivaind 35 (252)
+|.|+|.|.+|..+++.+...+ ++ ++++..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g-~~~v~~~~~ 162 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAG-ARRVIAIDR 162 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC
Confidence 6889999999999988887665 77 666544
No 396
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=45.88 E-value=33 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
+|.|.|.|.+|...++.+...+ . +++++.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~ 217 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAK-ASRIIAID 217 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6889999999999888877665 5 566653
No 397
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=45.78 E-value=30 Score=35.40 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=23.6
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC-CceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRD-DVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~-~~~ivai 33 (252)
.||+|+|+|.+|..+++.+.+.+ ..+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~ 34 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAV 34 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999987765 2354444
No 398
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=45.58 E-value=25 Score=31.64 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivai 33 (252)
+|.|.|.|.+|..+++.+...+ + .++++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 6889999999999988887776 5 56666
No 399
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=45.50 E-value=31 Score=31.36 Aligned_cols=31 Identities=39% Similarity=0.490 Sum_probs=24.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.||-|-| .|.||+.+++.+.+++ .+++.+.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 4899999 8999999999998876 44444433
No 400
>PLN00203 glutamyl-tRNA reductase
Probab=45.00 E-value=27 Score=34.72 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=24.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+|+|+|.|.+|+.+++.+...+--+++.+|-
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 58999999999999999998776224555543
No 401
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=44.92 E-value=34 Score=31.22 Aligned_cols=34 Identities=12% Similarity=0.346 Sum_probs=28.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
||+..|.|+|-|-+|...+..|.+++ .+++.+..
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g-~~V~lie~ 34 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRG-LRVLGLDR 34 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence 67788999999999999999888775 77666653
No 402
>PRK08163 salicylate hydroxylase; Provisional
Probab=44.92 E-value=33 Score=31.66 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=23.7
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
..+|.|+|.|..|-..+..+...+ ++++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g-~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG-IKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC-CcEEEE
Confidence 579999999999999888776554 665544
No 403
>PRK05586 biotin carboxylase; Validated
Probab=44.79 E-value=31 Score=33.13 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=27.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
-||+|.|-|.+|+.+++++.+.+ ++.+++..
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG-~~~v~v~~ 33 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMG-IETVAVYS 33 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC-CcEEEEcC
Confidence 59999999999999999998876 88777743
No 404
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=44.64 E-value=40 Score=30.22 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
+|.|+|.|.+|..+++.+...+ .+ ++++.
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g-~~~v~~~~ 197 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASG-ARKVIVSD 197 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 6889999999999988776655 66 55553
No 405
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=44.30 E-value=37 Score=31.02 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+||-|.| .|.||+.+++.+.+++ .+++++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6899999 8999999999998876 77776644
No 406
>PLN02858 fructose-bisphosphate aldolase
Probab=44.30 E-value=29 Score=38.64 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=25.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+||++|+|.+|..+++.+...+ +++++.|
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G-~~V~v~d 354 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSN-FSVCGYD 354 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCC-CEEEEEe
Confidence 68999999999999999998776 7766554
No 407
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=44.26 E-value=33 Score=30.35 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|.| .|.||+.+++.+.+.+ .+++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 789999 7999999999998876 67766654
No 408
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=44.22 E-value=21 Score=32.74 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 8 InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|+|.|.||..++..+...+-+.-+.+-|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999998876664433344443
No 409
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=44.20 E-value=36 Score=32.67 Aligned_cols=32 Identities=31% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|| -||.|.|-|.++..+++++.+.+ ++++++.
T Consensus 1 ~~-kkili~g~g~~~~~~~~aa~~lG-~~vv~~~ 32 (449)
T TIGR00514 1 ML-DKILIANRGEIALRILRACKELG-IKTVAVH 32 (449)
T ss_pred Cc-ceEEEeCCCHHHHHHHHHHHHcC-CeEEEEE
Confidence 65 49999999999999999998876 8988885
No 410
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=44.18 E-value=33 Score=31.55 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcC--CCceEEEEeC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVND 35 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~--~~~~ivaind 35 (252)
|+..+|.|+|.|..|-..+..|... .+++++.+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 7789999999999999888777554 1477666654
No 411
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.91 E-value=32 Score=32.83 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=23.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||.|.|+|+.|+.+++.+. .+ .+++ +.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G-~~V~-~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF-GGVD-IFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC-CeEE-EEc
Confidence 48999999999999999888 65 6544 444
No 412
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.81 E-value=53 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivai 33 (252)
+|.|+|.|.+|+.+++.+...+ +. ++++
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G-~~~v~~~ 190 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG-ASRVTVA 190 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 6889999999999888887765 55 4444
No 413
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.44 E-value=99 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
++.|+|.|.+|....+.+...+ .+ ++++.
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~ 129 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG-AREVVGVD 129 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEC
Confidence 6889999999999888887665 56 66664
No 414
>PRK07340 ornithine cyclodeaminase; Validated
Probab=43.43 E-value=35 Score=31.19 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=25.7
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.+++|+|+|..|+.+++++.....++-+.|.+.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r 158 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR 158 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 589999999999999999865323565666665
No 415
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=43.01 E-value=36 Score=31.98 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.|+-|+|.|-+|+++++++.+.+--+++..|-
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 58999999999999999999876334444444
No 416
>PRK09291 short chain dehydrogenase; Provisional
Probab=42.78 E-value=46 Score=28.41 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|+ .++-|.| .|.||+.+++.+.+.+ .++++...
T Consensus 1 m~-~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 1 MS-KTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 44 4789999 7999999999998876 67766543
No 417
>PRK04148 hypothetical protein; Provisional
Probab=42.56 E-value=35 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.|+.++|.| .|..+++.+.+.+ .+++++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G-~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESG-FDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCC-CEEEEEE
Confidence 579999999 8887888887765 8988885
No 418
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=42.53 E-value=37 Score=31.19 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivai 33 (252)
+|.|+|.|.+|..+++.+...+ .. ++++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~ 214 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG-ASRIIAV 214 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6889999999999988887766 54 4444
No 419
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=42.49 E-value=47 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=28.5
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCChhhh
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYM 43 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~-~ivaind~~~~~~~~ 43 (252)
.-||.|+|.|.+|..+++.|...+ + +++.|++-..+...+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNL 64 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHc
Confidence 468999999999999999997766 5 555554433344443
No 420
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=42.35 E-value=71 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|+|.|.+|+.+.+.+...+ .+++++..
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 7899998779999988777666 67666643
No 421
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=42.25 E-value=23 Score=28.35 Aligned_cols=29 Identities=34% Similarity=0.878 Sum_probs=24.3
Q ss_pred eeEECCeeEEEEeecCCCC---CCCcccCccEEE
Q 025476 68 TLLFGEKPVTVFGVRNPEE---IPWAETGAEYVV 98 (252)
Q Consensus 68 ~l~i~G~~i~v~~~~dp~~---~~w~~~~vdiV~ 98 (252)
++-++++..+.+.++++++ |||. .+|+|.
T Consensus 26 kimiGDkaFEFyn~~n~~dyIQIPW~--eI~~V~ 57 (118)
T PF06115_consen 26 KIMIGDKAFEFYNDRNVEDYIQIPWE--EIDYVI 57 (118)
T ss_pred eEEEcccceEeecCCChhhcEEeChh--heeEEE
Confidence 7788889999998888875 9998 788874
No 422
>PRK15076 alpha-galactosidase; Provisional
Probab=42.21 E-value=20 Score=34.70 Aligned_cols=14 Identities=29% Similarity=0.116 Sum_probs=12.1
Q ss_pred ceEEEEcCChhHHH
Q 025476 4 VKIGINGFGRIGRL 17 (252)
Q Consensus 4 ~kv~InG~GrIGr~ 17 (252)
+||+|+|.|.+|..
T Consensus 2 ~KIaIIGaGsvg~~ 15 (431)
T PRK15076 2 PKITFIGAGSTVFT 15 (431)
T ss_pred cEEEEECCCHHHhH
Confidence 59999999999843
No 423
>PLN02572 UDP-sulfoquinovose synthase
Probab=42.20 E-value=39 Score=32.51 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=26.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
++|-|-| .|.||+.+++.+.+++ .+++++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 5899999 8999999999998876 7777765
No 424
>PLN02702 L-idonate 5-dehydrogenase
Probab=41.93 E-value=50 Score=30.20 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=22.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+|.|+|.|.+|...++.+...+ .+.+.+.+.
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~ 214 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFG-APRIVIVDV 214 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 6889999999999888877665 553334443
No 425
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=41.87 E-value=36 Score=29.72 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=24.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
||.|.| .|.||+.+++.+.+++ .+++++.-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCC
Confidence 578999 7999999999998775 67766643
No 426
>PRK12827 short chain dehydrogenase; Provisional
Probab=41.60 E-value=47 Score=27.97 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.4
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.+++-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 46899999 7999999999998876 6666654
No 427
>PRK07577 short chain dehydrogenase; Provisional
Probab=41.48 E-value=51 Score=27.65 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=26.1
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|...++-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~ 34 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIA 34 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 4445789999 7999999999998776 6766654
No 428
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=41.04 E-value=44 Score=30.30 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
+|.|+|.|.+|...++.+...+ . .++++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG-ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 6889999999999988887765 6 555553
No 429
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=40.48 E-value=12 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=26.8
Q ss_pred cCccEEEecCCCCCCHHhHHHHHhCCCCEEEEcCCC
Q 025476 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (252)
Q Consensus 92 ~~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ps 127 (252)
.++|+||||+|.-...+.+-..++.|.+-+++..++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 379999999996666677777888777656665544
No 430
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=40.41 E-value=41 Score=35.43 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=28.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcC---CCceEEEEeC
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVND 35 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~---~~~~ivaind 35 (252)
||++||.|+|.|..|...++.+.++ ++++|+.+.+
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~ 38 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCE 38 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 7778999999999999888887643 3588888864
No 431
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=40.30 E-value=41 Score=34.06 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+||.|-| .|.||+.+++.+.+..+.+++++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 5899999 8999999999998765588888864
No 432
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=40.20 E-value=50 Score=27.67 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.8
Q ss_pred ceEEEEcCChh-HHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRI-GRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrI-Gr~v~r~~~~~~~~~ivain 34 (252)
-++.|+|.|.+ |+.+++.+.+.+ .+++.++
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~ 75 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCH 75 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEE
Confidence 58999999985 998999888765 4544444
No 433
>PRK08264 short chain dehydrogenase; Validated
Probab=40.15 E-value=52 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=23.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
.++-|.| .|.||+.+++.+.+++ . +++.+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G-~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARG-AAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-cccEEEEe
Confidence 3789999 8999999999998776 5 544443
No 434
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=40.14 E-value=46 Score=29.82 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=24.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-++.|.|.|.+||.+++++.+.+-.+++.+|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 4789999999999999999877633444444
No 435
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=39.87 E-value=39 Score=30.26 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=23.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|||-|-| .|.||+.+.+.+.+++ +++++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 3899999 7999999999888776 455554
No 436
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.63 E-value=40 Score=31.23 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred cceEEEEcCChhHHHHHHHHHcCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
++||+|+|.|.+|..++..+.+.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 369999999999999998887765
No 437
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=39.60 E-value=43 Score=29.68 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|-|+| .|.+|...++.+...+ .+++++..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~ 176 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAG 176 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 678999 7999999988887665 77776654
No 438
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=39.40 E-value=64 Score=28.90 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=22.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|+|.|.+|...++.+...+ .+.+.+.+
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~ 193 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARG-VGPIVASD 193 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 6789999999998888776665 55444433
No 439
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.22 E-value=40 Score=31.01 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRD 26 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~ 26 (252)
|||.|.|.|.+|..+.-.+...+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 59999999999999888777666
No 440
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=39.13 E-value=18 Score=35.64 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=16.5
Q ss_pred ceEEEEcCChhHHHHHHHHHcC
Q 025476 4 VKIGINGFGRIGRLVARVILQR 25 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~ 25 (252)
.+|+|+|+|.+|+..+..+..+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS 58 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS 58 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc
Confidence 5899999999999654444333
No 441
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=38.99 E-value=46 Score=31.01 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=24.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-+|.|+|-|.+|...++.|.+.+ .+++.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g-~~V~vle 31 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG-YQVTVFD 31 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 39999999999999999888765 6766664
No 442
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=38.81 E-value=40 Score=28.37 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=46.0
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~d 83 (252)
.++.|.|||.+|+-+++.+...+ .. |.|.|. ||- .++| +. .+|..+.-+. +
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~--DPi---~alq--------------A~------~dGf~v~~~~-~- 74 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI--DPI---RALQ--------------AA------MDGFEVMTLE-E- 74 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S--SHH---HHHH--------------HH------HTT-EEE-HH-H-
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC--ChH---HHHH--------------hh------hcCcEecCHH-H-
Confidence 47899999999999999998776 33 244443 332 2222 00 1222221111 1
Q ss_pred CCCCCCcccCccEEEecCCCC--CCHHhHHHHHhCCCCEEEEcCCCCC
Q 025476 84 PEEIPWAETGAEYVVESTGVF--TDKDKAAAHLKGGAKKVIISAPSKD 129 (252)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~f--~~~~~a~~h~~~GakkViis~ps~d 129 (252)
-++ ..|+++-+||.- ++.+.. ..++-|| ++.+..+.|
T Consensus 75 --a~~----~adi~vtaTG~~~vi~~e~~-~~mkdga--il~n~Gh~d 113 (162)
T PF00670_consen 75 --ALR----DADIFVTATGNKDVITGEHF-RQMKDGA--ILANAGHFD 113 (162)
T ss_dssp --HTT----T-SEEEE-SSSSSSB-HHHH-HHS-TTE--EEEESSSST
T ss_pred --HHh----hCCEEEECCCCccccCHHHH-HHhcCCe--EEeccCcCc
Confidence 122 569999999963 355544 4577888 777666544
No 443
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=38.78 E-value=82 Score=27.82 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=24.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~-GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|+|. |.+|..+.+.+...+ ++++++..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~ 179 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG-YEVVASTG 179 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CeEEEEec
Confidence 6889995 999999988887776 77776654
No 444
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=38.76 E-value=43 Score=31.01 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
||+|+|-|..|+.+++++.+.+ ++++++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G-~~v~~~d~ 30 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLG-VEVIAVDR 30 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CEEEEEeC
Confidence 7999999999999999988776 77766643
No 445
>PRK06180 short chain dehydrogenase; Provisional
Probab=38.42 E-value=58 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=26.3
Q ss_pred CC-cceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 1 MG-KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 1 m~-~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|| ..++-|.| .|-||+.+++.+.+++ .+++++.-
T Consensus 1 ~~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r 36 (277)
T PRK06180 1 MSSMKTWLITGVSSGFGRALAQAALAAG-HRVVGTVR 36 (277)
T ss_pred CCCCCEEEEecCCChHHHHHHHHHHhCc-CEEEEEeC
Confidence 44 35689999 7999999999988775 77666643
No 446
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.35 E-value=57 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.5
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
..++-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 46899999 8999999999998876 6666554
No 447
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=37.91 E-value=56 Score=29.85 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=26.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|+.+|.|+|-|-+|-..+..|.+++ .+++.+.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G-~~V~vie 34 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLE 34 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC-CEEEEEe
Confidence 35689999999999998888887776 4666665
No 448
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.82 E-value=59 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=24.9
Q ss_pred CcceEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 025476 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 2 ~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|..++-|.| .|.||+.+++.+.+.+ .+++.+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 335799999 7999999999887765 777666
No 449
>PRK08017 oxidoreductase; Provisional
Probab=37.39 E-value=62 Score=27.55 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=24.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.++-|.| .|.||+.+++.+.+++ .+++++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 4799999 5999999999998776 67666643
No 450
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=37.33 E-value=47 Score=30.59 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=24.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|||+|-|..|+.+.+++.+.+ +++++++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG-~~v~~~d 29 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLG-IKVHVLD 29 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CEEEEEC
Confidence 4899999999999999988876 7776664
No 451
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=37.18 E-value=73 Score=28.46 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=23.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|.|.|.+|..+++.+...+..+++++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 5889998889999988887665466666643
No 452
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=37.00 E-value=49 Score=32.17 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.4
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
..+|+|+|.|..|-..++.+.+.+ ++++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEEE
Confidence 479999999999999999887665 565555
No 453
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=36.89 E-value=1.1e+02 Score=27.99 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
.|.|+|.|.+|....+.+...+ . .++++.
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~ 218 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAG-ASRIIGID 218 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6889999999999988887666 5 465553
No 454
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.86 E-value=60 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~-GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|.|+|. |.+|...++.+...+ .+++++.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~ 190 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG-CYVVGSA 190 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEc
Confidence 6889996 999999888877665 6766654
No 455
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=36.84 E-value=42 Score=28.70 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=26.3
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.-||.|.|.|-+|..+++++...+ +.-+.+-|.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~G-Vg~i~lvD~ 53 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSG-IGSLTILDD 53 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 368999999999999999997766 655555554
No 456
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=36.82 E-value=52 Score=26.77 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=51.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeecCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~dp 84 (252)
||+|.|.|..|..++..+..++ .+ |-+-.. +.+.+..+-+ ++.... ...+- .+.- .+.+ ..|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~-V~l~~~--~~~~~~~i~~---~~~n~~----~~~~~-~l~~---~i~~--t~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HE-VTLWGR--DEEQIEEINE---TRQNPK----YLPGI-KLPE---NIKA--TTDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EE-EEEETS--CHHHHHHHHH---HTSETT----TSTTS-BEET---TEEE--ESSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CE-EEEEec--cHHHHHHHHH---hCCCCC----CCCCc-ccCc---cccc--ccCH
Confidence 7999999999999999888776 33 233333 3344433221 111000 00011 1211 2334 2455
Q ss_pred CCCCCcccCccEEEecCCCCCCHHhHHH---HHhCCCCEEEEcCC
Q 025476 85 EEIPWAETGAEYVVESTGVFTDKDKAAA---HLKGGAKKVIISAP 126 (252)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~f~~~~~a~~---h~~~GakkViis~p 126 (252)
++.- .+.|+++-+++.+--++.++. |++.+. .+++.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 3311 278999999998876655543 444555 566554
No 457
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=36.75 E-value=60 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.9
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++|-|-| .|.||+.+++.+.+.+ .+++++.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 46899999 7999999999998876 6776664
No 458
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.69 E-value=69 Score=28.83 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|+|.|.+|..+++.+...+ ++++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG-ARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEeC
Confidence 6889999999999888877665 77766643
No 459
>PRK08013 oxidoreductase; Provisional
Probab=36.58 E-value=52 Score=30.77 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|+...|.|+|.|..|-..+..+...+ ++++.+.
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G-~~v~viE 33 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSG-LRVAVLE 33 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCC-CEEEEEe
Confidence 66679999999999999887775544 6655554
No 460
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=36.55 E-value=52 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||++-|.|+|.|.-|...++.+.+.+ ++++.+.
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlE 33 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLE 33 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEEe
Confidence 67789999999999999999888776 7766663
No 461
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=36.51 E-value=60 Score=26.57 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=25.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
++.|.|.|..|+.+++.+.+. ++++++.-|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 478999999999999988655 5888887664
No 462
>PRK08263 short chain dehydrogenase; Provisional
Probab=36.48 E-value=67 Score=28.02 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
||...+-|-| .|.||+.+++.+.+++ .+++.+.
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~ 34 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERG-DRVVATA 34 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEE
Confidence 6656789999 8999999999988776 6665554
No 463
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=36.38 E-value=62 Score=29.25 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEE
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivai 33 (252)
+|.|+|.|.+|..+.+.+...+ . .++.+
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~ 206 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG-PANIIVV 206 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEE
Confidence 6888999999999888777665 5 34444
No 464
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=36.18 E-value=1.7e+02 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~-~ivain 34 (252)
+|.|.|.|-+|....+.+...+ . +++++.
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~ 209 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG-ARRVIVID 209 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 6889999999999988887665 6 666664
No 465
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=36.06 E-value=52 Score=29.84 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=23.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|||-|-| .|.||+.+++.+.+++.-.++.+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 3899999 79999999999988763333333
No 466
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=35.89 E-value=48 Score=29.04 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.3
Q ss_pred eEEEEc-CChhHHHHHHHHHcCC-CceEEEEe
Q 025476 5 KIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~-~~~ivain 34 (252)
||.|.| .|.||+.+++.+.+.+ ..++++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 578899 8999999999998765 47777664
No 467
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.87 E-value=1.8e+02 Score=25.83 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=69.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCChhhhheeeeeecccccCCCcceEEcCCeeeEECCeeEEEEeec
Q 025476 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~-~~~ivaind~~~~~~~~ayll~ydS~~G~~~~~~v~~~~~~~l~i~G~~i~v~~~~ 82 (252)
||++|+..|.-|..+..++..+. .-++++|-++ ++.+.-. + .
T Consensus 2 mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~---Pe~~~~f-------------------------------i---e 44 (224)
T COG1810 2 MKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEY---PEELPDF-------------------------------I---E 44 (224)
T ss_pred cEEEEEeeccchHHHHHhHhhhccccceEEEEec---cccccch-------------------------------h---h
Confidence 59999999999999988887543 1333444332 1111000 0 1
Q ss_pred CCCCCCCcccCccEEEec-CCCCCCHHhHHHHHhCCCCEEEEcCCCCCCCeEEeecCccccCC---CCCe-E--EcCCch
Q 025476 83 NPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP---ELNI-V--SNASCT 155 (252)
Q Consensus 83 dp~~~~w~~~~vdiV~e~-tg~f~~~~~a~~h~~~GakkViis~ps~d~p~vV~gVN~~~~~~---~~~I-I--S~asCt 155 (252)
+|+++-=.-.++|+++-- -...++.+.++...++|.|-+|+.+-.++ |+- ++++. ...+ . --+-|+
T Consensus 45 ~P~~~Lp~~~e~Di~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~------g~r-kqL~~~~~~~g~e~~~p~p~C~ 117 (224)
T COG1810 45 EPEDLLPKLPEADIVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPE------GLR-KQLKEFCEELGVEFEAPEPFCS 117 (224)
T ss_pred CHHHhcCCCCCCCEEEEeccCccHHHHHHHHHHhCCccEEEEecCCCh------hHH-HHHHHHhhhcceeeecCCcccc
Confidence 122110000267777653 45666777777777888888888543322 211 12211 1111 1 133555
Q ss_pred hhhHH-HHHHHHHhhcCeeEEE
Q 025476 156 TNCLA-PLAKVIHDKFGIVEGL 176 (252)
Q Consensus 156 T~~La-p~lk~L~~~fgI~~~~ 176 (252)
.---. |.++..-+.||=-++.
T Consensus 118 Le~~~~p~i~~F~e~FG~P~ve 139 (224)
T COG1810 118 LEPNENPHIDEFAERFGKPEVE 139 (224)
T ss_pred CCCCCChHHHHHHHHcCCceEE
Confidence 43333 8888899999844433
No 468
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=35.76 E-value=58 Score=31.09 Aligned_cols=31 Identities=32% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
|| .||-|.|-|.+|..+++++.+.+ ++++++
T Consensus 1 ~~-k~iLi~g~g~~a~~i~~aa~~~G-~~vv~~ 31 (451)
T PRK08591 1 MF-DKILIANRGEIALRIIRACKELG-IKTVAV 31 (451)
T ss_pred Cc-ceEEEECCCHHHHHHHHHHHHcC-CeEEEE
Confidence 55 69999999999999999998876 887777
No 469
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=35.70 E-value=52 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=25.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|| .+|.|+|-|.+|...+.++..++ ++++-+.
T Consensus 1 ~~-~dVvVIGGGlAGleAAlaLAr~G-l~V~LiE 32 (436)
T PRK05335 1 MM-KPVNVIGAGLAGSEAAWQLAKRG-VPVELYE 32 (436)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 44 68999999999999999887765 5554443
No 470
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=35.46 E-value=87 Score=28.08 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeC
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivaind 35 (252)
+|.|+|.|.+|..+++.+...+ .+ ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG-AKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 6889999999999988776665 65 666644
No 471
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=35.12 E-value=67 Score=29.87 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.0
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+||+|+|.|..|+.+++++.+.+ ++++.++.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G-~~v~~~~~ 43 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLG-VEVIAVDR 43 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 368999999999999999887765 77766654
No 472
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=35.04 E-value=68 Score=26.73 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=23.7
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 6 v~InG-~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
|-|.| .|.||+.+++.+.+++ .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 56889 8999999999999887 555555543
No 473
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=34.98 E-value=64 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.0
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCC-CceEEEEe
Q 025476 3 KVKIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~-~~~ivain 34 (252)
..+|-|-| .|.||+.+++.+.+++ ..+++.+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 46899999 8999999999998774 24665553
No 474
>PLN02214 cinnamoyl-CoA reductase
Probab=34.87 E-value=65 Score=29.50 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=25.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.+|.|-| .|.||+.+++.+.+++ .+++++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 5799999 7999999999998876 67766643
No 475
>PRK06182 short chain dehydrogenase; Validated
Probab=34.83 E-value=73 Score=27.68 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|...++-|.| .|.||+.+++.+.+.+ .+++++.
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~ 34 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQG-YTVYGAA 34 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 4446788999 7999999999998776 6766654
No 476
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.74 E-value=67 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=24.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|++-|.| .|.||+.+++.+.+.+ .+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEE
Confidence 3788999 7999999999998776 6766554
No 477
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=34.57 E-value=57 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=25.2
Q ss_pred CC-cceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~-~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|| ...|.|+|.|..|-..+-+|... +++++.+.
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE 34 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKES-DLRIAVIE 34 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhC-CCEEEEEc
Confidence 56 46899999999999988777555 47765553
No 478
>PRK06914 short chain dehydrogenase; Provisional
Probab=34.53 E-value=75 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.6
Q ss_pred CCcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 1 m~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|+...+-|.| .|.+|+.+++.+.+++ .+++++..
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~r 35 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKG-YLVIATMR 35 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC-CEEEEEeC
Confidence 5544578888 8999999999998876 77777643
No 479
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=34.51 E-value=52 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=22.3
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivai 33 (252)
-||+|+|.|.-|-..++.+.+.+ ++.+..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g-~~~~~f 30 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG-LEVTCF 30 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CCCeEE
Confidence 48999999999999999998876 887766
No 480
>PRK12320 hypothetical protein; Provisional
Probab=34.48 E-value=57 Score=33.71 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=26.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|||.|.| .|.||+.+++.+.+++ .+++++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 3899999 8999999999998876 67777754
No 481
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=34.42 E-value=1.7e+02 Score=27.50 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=23.1
Q ss_pred CccEEEecCCCCCCHHhHHHHHhCCCCEEEEcC
Q 025476 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (252)
Q Consensus 93 ~vdiV~e~tg~f~~~~~a~~h~~~GakkViis~ 125 (252)
++|+|+|++|.-.+.+.+-..++.+.+.+++.+
T Consensus 257 g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 257 GFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 789999999865555666677775555555544
No 482
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.41 E-value=76 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.++-|.| .|.||+.+++.+.+.+ .+++.+.-
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~r 39 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEG-VNVGLLAR 39 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeC
Confidence 3688999 7999999999988776 57666653
No 483
>PRK07102 short chain dehydrogenase; Provisional
Probab=34.28 E-value=71 Score=27.09 Aligned_cols=29 Identities=31% Similarity=0.243 Sum_probs=23.9
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
++-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G-~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAG-ARLYLAA 32 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcC-CEEEEEe
Confidence 788999 8999999999998876 6665553
No 484
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.17 E-value=76 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=25.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
.++-|.| .|.||+.+++.+.+++ .+++.+.-
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 5889999 7999999999998876 67666543
No 485
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.15 E-value=62 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=22.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 025476 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (252)
Q Consensus 5 kv~InG~GrIGr~v~r~~~~~~~~~-ivain 34 (252)
+|.|+|.|.+|...++.+...+ .+ ++++.
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~ 198 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRG-AGRIIAVG 198 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6889999999999988887665 54 44443
No 486
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=34.03 E-value=87 Score=27.77 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=23.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCCCceEEEEe
Q 025476 5 KIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 5 kv~InG~-GrIGr~v~r~~~~~~~~~ivain 34 (252)
+|.|+|. |.+|..+++.+...+ .+++++.
T Consensus 165 ~vlI~g~~g~vg~~~~~~a~~~G-~~v~~~~ 194 (325)
T cd08264 165 TVVVFGASGNTGIFAVQLAKMMG-AEVIAVS 194 (325)
T ss_pred EEEEECCCchHHHHHHHHHHHcC-CeEEEEe
Confidence 6889995 999999988887766 6666653
No 487
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=33.56 E-value=63 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~~~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|.+.+|.|+|-|..|...+.++...+ ++++.+.
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G-~~v~l~E 33 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQG-RSVAVIE 33 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCC-CcEEEEc
Confidence 54579999999999999888776654 6665554
No 488
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=33.55 E-value=68 Score=29.83 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=24.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
|+|.|+|-|-+|...+..+...+ .+++.+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g-~~V~vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG-HEVTVIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 38999999999999988887765 66666654
No 489
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=33.39 E-value=48 Score=33.43 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.9
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCCCceE
Q 025476 3 KVKIGING-FGRIGRLVARVILQRDDVEL 30 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~~~~i 30 (252)
.|||-|-| .|.||+.+.+.+.+++ .++
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g-~~v 407 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQG-IAY 407 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCC-CeE
Confidence 47999999 7999999999887765 665
No 490
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=33.36 E-value=99 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.8
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 5 kv~InG-~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
+|.|+| .|.+|...++.+...+ .+++.+.+.
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~~ 173 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARG-INVINLVRR 173 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCC-CeEEEEecC
Confidence 688888 5999999988887776 777777664
No 491
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=33.04 E-value=69 Score=29.50 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.9
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
-+++|+|.|..|+.+++++....+++-+.|-+.
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 479999999999999999874334766666665
No 492
>PLN02686 cinnamoyl-CoA reductase
Probab=32.90 E-value=72 Score=29.63 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=26.6
Q ss_pred CcceEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 025476 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 2 ~~~kv~InG-~GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+..+|-|-| .|.||+.+.+.+.+++ .+++++.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r 85 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVD 85 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeC
Confidence 346899999 7999999999998876 77766544
No 493
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=32.87 E-value=63 Score=32.57 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=27.4
Q ss_pred cceEEEEc-CChhHHHHHHHHHcCC-CceEEEEeC
Q 025476 3 KVKIGING-FGRIGRLVARVILQRD-DVELVAVND 35 (252)
Q Consensus 3 ~~kv~InG-~GrIGr~v~r~~~~~~-~~~ivaind 35 (252)
.+||.|-| .|.||+.+++.+.+++ +.+++++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 36999999 8999999999998763 578877754
No 494
>PRK08291 ectoine utilization protein EutC; Validated
Probab=32.77 E-value=71 Score=29.45 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.+++|+|.|..|+.+++++....+++-+.|.+.
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 489999999999999998875334666677665
No 495
>PRK06179 short chain dehydrogenase; Provisional
Probab=32.42 E-value=85 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=25.7
Q ss_pred CC-cceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 1 MG-KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 1 m~-~~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
|| ..++-|.| .|.||+.+++.+.+++ .+++++.
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~ 35 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAG-YRVFGTS 35 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 55 34688889 8999999999998876 6766554
No 496
>PRK09135 pteridine reductase; Provisional
Probab=32.33 E-value=84 Score=26.41 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=24.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG-~GrIGr~v~r~~~~~~~~~ivain 34 (252)
.++-|-| .|.||+.+.+.+.+.+ .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG-YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc
Confidence 4689999 8999999999998776 7776664
No 497
>PLN02858 fructose-bisphosphate aldolase
Probab=32.24 E-value=48 Score=36.91 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=25.1
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivain 34 (252)
-|||++|+|.+|..+++++...+ +++.+-|
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G-~~v~v~d 34 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSG-FKVQAFE 34 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCC-CeEEEEc
Confidence 58999999999999999998776 7765443
No 498
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=48 Score=32.93 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=78.4
Q ss_pred ceEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC-CChhhhh--eeeeeecccccCCCcceEEcCCeeeEECC-eeEEEE
Q 025476 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF-ITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (252)
Q Consensus 4 ~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~~-~~~~~~a--yll~ydS~~G~~~~~~v~~~~~~~l~i~G-~~i~v~ 79 (252)
-||-++|.|-||..+|+.+.-.+ |+-+.|-|+. +|+..+= +||+-+- -|+-+ .++ +.+- -..++- -.+.-.
T Consensus 13 ~riLvVGaGGIGCELLKnLal~g-f~~IhiIDlDTIDlSNLNRQFLFrkkh-VgqsK-A~v-A~~~-v~~Fnpn~~l~~y 87 (603)
T KOG2013|consen 13 GRILVVGAGGIGCELLKNLALTG-FEEIHIIDLDTIDLSNLNRQFLFRKKH-VGQSK-ATV-AAKA-VKQFNPNIKLVPY 87 (603)
T ss_pred CeEEEEecCcccHHHHHHHHHhc-CCeeEEEeccceeccchhhhheeehhh-cCchH-HHH-HHHH-HHHhCCCCceEec
Confidence 48899999999999999987665 7777776653 2332221 4454221 11111 111 1111 122331 122221
Q ss_pred ee--cCC-CCCCCcccCccEEEecCCCCCCHHhHHHHHhCCC---CEEEEcCCCC---C-CCeEEeecCccccCC-----
Q 025476 80 GV--RNP-EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA---KKVIISAPSK---D-APMFVVGVNENEYKP----- 144 (252)
Q Consensus 80 ~~--~dp-~~~~w~~~~vdiV~e~tg~f~~~~~a~~h~~~Ga---kkViis~ps~---d-~p~vV~gVN~~~~~~----- 144 (252)
+. .+| -+..|- .+.|+|+.|-.- -.|+.|.-.-| ..-+|..... . +-.+.+|. .|-|+=
T Consensus 88 hanI~e~~fnv~ff-~qfdiV~NaLDN----laAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~Gk-TECyeC~pK~~ 161 (603)
T KOG2013|consen 88 HANIKEPKFNVEFF-RQFDIVLNALDN----LAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGK-TECYECIPKPV 161 (603)
T ss_pred cccccCcchHHHHH-HHHHHHHHhhcc----HHHHHHHHHHHHhhcCCceecCcccccceEEEEecCC-cceecccCCCC
Confidence 11 233 234453 247888776443 35666665332 1123322211 2 44555554 355531
Q ss_pred --C---CCeEEcCCchhhhHHHHH-HHHHhhcCee
Q 025476 145 --E---LNIVSNASCTTNCLAPLA-KVIHDKFGIV 173 (252)
Q Consensus 145 --~---~~IIS~asCtT~~Lap~l-k~L~~~fgI~ 173 (252)
. ..|=|-||=-..|++=+- ..+.+.||-+
T Consensus 162 ~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d 196 (603)
T KOG2013|consen 162 PKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGED 196 (603)
T ss_pred CCcCCceEeecCCCCceeeeeehHhHHHHHHhccc
Confidence 1 234556666667776555 4666888875
No 499
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.05 E-value=67 Score=24.98 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=28.1
Q ss_pred cceEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 025476 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (252)
Q Consensus 3 ~~kv~InG~GrIGr~v~r~~~~~~~~~ivaind~ 36 (252)
.-||-|.|-|.|+..++|++.+.+ ++.|+|+..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~G-i~tv~v~s~ 34 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELG-IETVAVNSN 34 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTT-SEEEEEEEG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC-CcceeccCc
Confidence 359999999999999999998886 999999864
No 500
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=31.87 E-value=82 Score=28.36 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=23.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCCCceEEEEeC
Q 025476 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (252)
Q Consensus 5 kv~InG~-GrIGr~v~r~~~~~~~~~ivaind 35 (252)
+|.|+|. |.+|....+.+...+ .+++++..
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG-CYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 6889995 999999988877665 67666543
Done!