RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025476
(252 letters)
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 214 bits (545), Expect = 3e-71
Identities = 89/164 (54%), Positives = 116/164 (70%), Gaps = 2/164 (1%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
KVK+G+NGFGRIGRLV R V++VA+NDPFI +YM YMF+YDS HG++ H +K
Sbjct: 1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 59
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
++ K L+ P+T+F R+P +I W + GAEYVVESTGVFT +KA AHL+GGAK+VI
Sbjct: 60 AENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 118
Query: 123 ISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVI 166
ISAPS DAPMFV+GVN +Y L I+SNAS + ++
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 208 bits (532), Expect = 2e-69
Identities = 94/168 (55%), Positives = 115/168 (68%), Gaps = 3/168 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KIGINGFGRIGRLV R L+ ++VAVNDPFI +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
D L+ K +TVF PE IPW++ GAEY+VESTGVFT +KA+AH KGGAKKVIIS
Sbjct: 60 DGA-LVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
APS DAPMFV GVN +Y ++ +VSNAS + +I +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 199 bits (508), Expect = 1e-65
Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 8/172 (4%)
Query: 5 KIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G +
Sbjct: 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKT 60
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
D + G+ + V RNP +PW + G + V+E TGVF D+D A HL+ GAKKV+
Sbjct: 61 AGDSAISVDGKV-IKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 119
Query: 123 ISAPSK-DAPMFVVGVNENEYKPELNIVSNASCT---TNCLAPLAKVIHDKF 170
I+AP K D P +VVGVNE Y I+SNAS + + LA ++ +K+
Sbjct: 120 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 191 bits (486), Expect = 2e-62
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
KD L+ K + V R+P + W E G + V E+TG+F + A H+ GAKKV++
Sbjct: 60 KDGH-LIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIH 167
+ PSKD PMFV G N ++Y + +IVSNAS T + +I
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 191 bits (487), Expect = 2e-62
Identities = 67/171 (39%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Query: 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
++ INGFGRIGRLV R+I +R D+E+VA+ND T + ++ KYDSVH ++ +++
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
++ +L+ K + VF +P ++PW + G ++V+ESTGVF +++KA HL+ GAKKVI
Sbjct: 60 YTEN-SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118
Query: 123 ISAPSKDAPM-FVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
I+AP+K + V+G NE++ KPE I+S AS + + +
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 187 bits (476), Expect = 5e-61
Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 6/169 (3%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
K+GINGFGRIGRLV R R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE--VTH 59
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
D LL GEK V+VF ++P +IPW + + V ESTGVF K+ A++HLKGGAKKVI+S
Sbjct: 60 ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119
Query: 125 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
AP KD P++V+G+N ++Y + IVSNAS +V+ I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 187 bits (475), Expect = 1e-60
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 7/175 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVND + + ++ KYDSVHG+
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAE--VS 58
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
+ L+ K + V R+PE + W E G + VVESTG FT ++ AA HL+ GAKKVII
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPS-KDAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
SAP+ + V+GVN+++Y P+ +++SNAS T + + + +GL
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 184 bits (467), Expect = 3e-59
Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH 58
+K+GINGFGRIGR+V + + + ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 59 -------HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAA 111
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT K A
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 112 AHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDK 169
HL+GGA+KV+ISAP+ A V+GVN +EY P E ++VSNA + ++
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181
Query: 170 FGI 172
Sbjct: 182 ASK 184
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 173 bits (441), Expect = 1e-55
Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 16/183 (8%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+ ING+G +G+ VA I Q+DD++++ V+ K
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT-RPDFEARMALKKGYDLY-------VA 53
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
++ LF + + V G + A+ V++ T + + G K +
Sbjct: 54 IPERVKLFEKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 124 SAPSKDAP--MFVVGVNENEY-KPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
+ F N E + V + + + ++ DK+ + +
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKAM 168
Query: 181 HSI 183
+ +
Sbjct: 169 NIL 171
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 160 bits (407), Expect = 2e-50
Identities = 32/179 (17%), Positives = 60/179 (33%), Gaps = 16/179 (8%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
KVK+G+NG+G IG+ VA + ++DD+EL+ + D+ Y K + E
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
+ +K G + + +V++T + K G K +
Sbjct: 60 PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 123 ISAPSKDA--PMFVVGVNENEY-KPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
D FV N V + + + ++ I + +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 160 bits (405), Expect = 3e-50
Identities = 76/170 (44%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
K+GINGFGRIGR V R++ R VE+ +ND + ++ KYDS++ ++
Sbjct: 2 KVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VAY 57
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
DD+ L K + V++P+EIPWAE G V+ESTGVFTD DKA AHL+GGAKKVII+
Sbjct: 58 DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIIT 117
Query: 125 APSKDAPM-FVVGVNENEYKP-ELNIVSNASCT---TNCLAPLAKVIHDK 169
AP+K + V+GVN Y P +I+SNAS N +A L +++ K
Sbjct: 118 APAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 159 bits (403), Expect = 8e-50
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 22/187 (11%)
Query: 4 VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
+++ ING+GRIGR + R + D+E+VA+ND ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGT- 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+ V ++ G+K + V RNP ++PW + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60 VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 121 VIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
VIISAP V GVN K ++SNA +++G ++
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLD 164
Query: 179 TVHSITA 185
T ++ +
Sbjct: 165 TTVALMS 171
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 150 bits (379), Expect = 4e-46
Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 32/191 (16%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
V + +NG+G IG+ VA I+++ D++LV V + + ++ V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIY---------V 52
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
F E + V + ++ VV++T +L+ + I
Sbjct: 53 PQQSIKKFEESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIF 106
Query: 124 SAPSKDA---PMFVVGVNENEY--KPELNIVSNASCTTNCLAPL------------AKVI 166
K F N NE K + +VS + + + ++
Sbjct: 107 QGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRIT 166
Query: 167 HDKFGIVEGLM 177
++ GI++G +
Sbjct: 167 NESLGILKGYL 177
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 124 bits (312), Expect = 3e-36
Identities = 55/64 (85%), Positives = 57/64 (89%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+ST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 214 GAAK 217
GAAK
Sbjct: 61 GAAK 64
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 120 bits (303), Expect = 5e-35
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
CTTNCLAP KV+ KFGI++G MTT HS T Q+ +D +D R RAA NI+P+ST
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59
Query: 214 GAAK 217
GAAK
Sbjct: 60 GAAK 63
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 118 bits (297), Expect = 6e-34
Identities = 48/66 (72%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 153 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS 211
SCTTNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 212 STGAAK 217
+TGAAK
Sbjct: 61 TTGAAK 66
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 115 bits (290), Expect = 5e-33
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
CTTN LAP+ KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59
Query: 214 GAAKVF 219
GAAK
Sbjct: 60 GAAKAT 65
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 113 bits (284), Expect = 4e-32
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
CTTNCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTT 59
Query: 214 GAAK 217
GAAK
Sbjct: 60 GAAK 63
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 99.2 bits (247), Expect = 1e-26
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 212
SCTTNCLAPL K ++DK G+ +GLMTTVH+ T Q D +D R R+A+ ++IP+
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59
Query: 213 TGAAKV 218
TGAA
Sbjct: 60 TGAAAA 65
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 81.9 bits (202), Expect = 6e-20
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 212
SC T L K +HD FGI + V + + IIP+
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49
Query: 213 TGAAK 217
Sbjct: 50 PKLPS 54
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 77.2 bits (190), Expect = 3e-18
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 213
C T L ++ + + T V + + + G S P++
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51
Query: 214 GAAK 217
+
Sbjct: 52 PSHH 55
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 49.5 bits (117), Expect = 3e-08
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
M +++ I G+G +GR V ++I ++ D++LV + T D T +F V +
Sbjct: 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVD 60
Query: 61 L 61
+
Sbjct: 61 V 61
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 42.3 bits (98), Expect = 1e-05
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+++IG+ G I R V+R I + + V + +
Sbjct: 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS 57
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 41.2 bits (96), Expect = 2e-05
Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 30/170 (17%)
Query: 3 KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
K+K+ I G G IG L+ +V+ +E+ A+ I
Sbjct: 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG--IDAASDGLARAQ---RMGVTTTYA 58
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121
V+ L VF T A V++ + G ++
Sbjct: 59 GVEGLIKLPEFADIDFVF----------DATSASAHVQN------EALLRQAKPG--IRL 100
Query: 122 IISAPSKDAPMFVVGVNENE--YKPELNIVSNASCTT----NCLAPLAKV 165
I P+ P V VN E K +N+V+ A LA ++
Sbjct: 101 IDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 40.8 bits (94), Expect = 4e-05
Identities = 18/174 (10%), Positives = 40/174 (22%), Gaps = 6/174 (3%)
Query: 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
I G G G + + + + + A+ + D + L+
Sbjct: 3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQP 62
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
D + V + A + + K
Sbjct: 63 MSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYE--KYYGF 120
Query: 124 SAPSKDAPMFVVGVNENEYKPEL---NIVSNASCTTNCLAPLAKVIHDKFGIVE 174
+ + V +L N+++ A + + +FG E
Sbjct: 121 THQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 39.4 bits (91), Expect = 9e-05
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND----PFITTDYMTYMFKYD-SVHGQW 56
+++ I G GR+GR + + L + V+L A + + +D V Q
Sbjct: 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQS 63
Query: 57 KHHELKVKDDKTLLFG 72
+K D + F
Sbjct: 64 SLDAVKDDFDVFIDFT 79
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 39.5 bits (91), Expect = 1e-04
Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 13/174 (7%)
Query: 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
++ GI G G G + R++ + ++ ++ + +F + +
Sbjct: 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPS------TLENSIL 55
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
+ D + V + + G D + +
Sbjct: 56 SEFDPEKVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYRE----WYG 111
Query: 123 ISAPSKDAPMFVVGVNENEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174
+ V G+ E + +V N + ++ FG+ E
Sbjct: 112 KELSGYENIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 37.9 bits (87), Expect = 4e-04
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
GK + + G GR G + R + + +
Sbjct: 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 37.7 bits (86), Expect = 4e-04
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 3 KVKIGINGFGRIG-RLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
K++IG+ G G I + V+ D L P
Sbjct: 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL 58
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 37.2 bits (85), Expect = 8e-04
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH 58
+ K+++GI G G R + L+ E+ AV + +
Sbjct: 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYE 60
Query: 59 H 59
Sbjct: 61 E 61
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 35.1 bits (80), Expect = 0.003
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF-----ITTDYMTYMFKYDSVHGQWKH 58
++G+ G G++G + R + DD+ L A D +T + + +
Sbjct: 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGN 60
Query: 59 HELKVKDDKTLLFG 72
E + + + G
Sbjct: 61 LEFLIDNGIHAVVG 74
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 35.0 bits (79), Expect = 0.004
Identities = 17/183 (9%), Positives = 48/183 (26%), Gaps = 8/183 (4%)
Query: 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
+V+I + G G G + R++ + + + +F + +
Sbjct: 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAV 64
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKK 120
K D + + + + + + + +
Sbjct: 65 KDADFSNV-----DAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHS 119
Query: 121 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
++A + V NE + +V+N + ++ G+ E
Sbjct: 120 HRAPELQQEAVYGLTEVLRNEIR-NARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQY 178
Query: 181 HSI 183
+
Sbjct: 179 QPL 181
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 32.4 bits (72), Expect = 0.038
Identities = 6/67 (8%), Positives = 14/67 (20%), Gaps = 10/67 (14%)
Query: 3 KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFI---------TTDYMTYMFKYDSV 52
+ I G G+ + + A+ ++ Y +
Sbjct: 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF 92
Query: 53 HGQWKHH 59
K
Sbjct: 93 DKIAKDP 99
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism
regulatory protein GAL80 {Yeast (Kluyveromyces lactis)
[TaxId: 28985]}
Length = 237
Score = 30.8 bits (68), Expect = 0.13
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 3 KVKIGINGFGRIGRLVARVIL-----QRDDVELVAVNDP-------FITTDYMTYMFKYD 50
+++G G VA+ ++VA+ +P I + + +D
Sbjct: 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD 75
Query: 51 SVHGQWKHH 59
S+ ++
Sbjct: 76 SLESFAQYK 84
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase
VCA1048 {Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 29.8 bits (66), Expect = 0.22
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 5 KIGINGFGRIG-RLVARVILQRDDVELVAVND 35
KI + G G I + V+ Q D+ELV
Sbjct: 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTR 34
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 29.1 bits (64), Expect = 0.28
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 8/55 (14%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+ + G GR G + + EL + + D + +
Sbjct: 2 QFAVIGLGRFGGSIVK--------ELHRMGHEVLAVDINEEKVNAYASYATHAVI 48
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 29.4 bits (65), Expect = 0.29
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 186
C+T + + + K+G+ +++T +++
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGA 33
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 29.0 bits (65), Expect = 0.33
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 153 SCTTNCLAPLAKVIHDKFGIVEGLM 177
SC T L I + V +M
Sbjct: 1 SCNTTGLVRTLSAIREYADYVYAVM 25
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 29.3 bits (65), Expect = 0.34
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 186
CT + + ++++ + T + +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGA 34
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 28.9 bits (64), Expect = 0.50
Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 17 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76
V + + D + + ++ S +VK + +
Sbjct: 135 RVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLD----KARL 190
Query: 77 TV-FGVRNPEEIPWAETGAEYVV 98
G+ + E+ A+ ++
Sbjct: 191 FYGGGIDSREKAREMLRYADTII 213
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 27.7 bits (61), Expect = 0.68
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 5 KIGINGFGRIGRLVARVILQRDD 27
+ I G G IG+ + +
Sbjct: 4 TVLIIGMGNIGKKLVELGNFEKI 26
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 28.0 bits (61), Expect = 0.69
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
I I G GR+G +A+ + ++ ++ D D
Sbjct: 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK----DICKKASAEIDALVINGDC 52
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 28.2 bits (62), Expect = 0.73
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 186
CT + + + + + T + +
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASGG 34
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 27.3 bits (60), Expect = 1.1
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 11 FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD 66
GR+ VA+++L+ ++V +V IT + KY G +
Sbjct: 11 LGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPF 66
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 26.9 bits (59), Expect = 1.5
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 5 KIGINGFGRIGRLVAR 20
+ G R +A+
Sbjct: 100 NLITYATGGRPRNIAK 115
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 27.0 bits (59), Expect = 1.6
Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 3/122 (2%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KI + G G +G A + ++ + + D + Y+S ++
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124
+D + + P + T + ++++ G+ + +++S
Sbjct: 62 NDYADTANSD-IVIITAGLPRKP--GMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118
Query: 125 AP 126
P
Sbjct: 119 NP 120
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 168
Score = 26.9 bits (59), Expect = 1.6
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD 27
V + + G G +G +L
Sbjct: 4 VVNVAVIGAGVVGSAFLDQLLAMKS 28
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 26.8 bits (58), Expect = 1.7
Identities = 6/55 (10%), Positives = 18/55 (32%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+ G G + VA ++++ + N + + ++ + H
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH 56
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 26.7 bits (57), Expect = 2.4
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
KIG+ G G IG +A L+R L+ V+ T + D
Sbjct: 2 KIGVVGLGLIGASLAGD-LRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL 55
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 200
Score = 26.4 bits (58), Expect = 2.5
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 161 PLAKVIHDKFGIVEGLMTTVH-----------SITATQKTVDGPSSKDWR-------GGR 202
L +H +FG+ + AT+ + G S+ + + G
Sbjct: 108 RLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATE--LAGFSTAEAQKFFGLPRGIT 165
Query: 203 AASFNIIPSSTGAAKVFF 220
F+IIP + A+ F
Sbjct: 166 RDMFDIIPLPSTEAQRLF 183
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 25.9 bits (56), Expect = 3.1
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 147 NIVSNASCTTNCLAPLAKVIHD 168
++S+ + L + H
Sbjct: 122 FLLSSPAALNAVLLGELLIKHY 143
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 26.2 bits (57), Expect = 3.1
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 19 ARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78
A L DD+ A ++ + Y G E VK K +L
Sbjct: 134 ADADLNMDDIVAYA-----RVSELLQLPIFYLEYSGVLGDIEA-VKKTKAVLETSTLFYG 187
Query: 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG 116
G+++ E A+ +V V+ D D+A +
Sbjct: 188 GGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAA 225
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 26.0 bits (56), Expect = 3.8
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 24/142 (16%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
++G GFG + + +A L+ VE+V + S + + V
Sbjct: 2 RVGFIGFGEVAQTLASR-LRSRGVEVVTSLEGR-------------SPSTIERARTVGVT 47
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGA-----EYVVESTGVFTDKDKAAAHLKG-GA 118
+ PV + V + A YV + A++ ++ G
Sbjct: 48 ETSEEDVYSCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGF 107
Query: 119 KKVIISAPSKDA----PMFVVG 136
I + + G
Sbjct: 108 VDAAIMGSVRRKGADIRIIASG 129
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 26.4 bits (57), Expect = 3.8
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38
+ K G+ G A+ L + + VA PFI
Sbjct: 292 RQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFI 329
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 25.4 bits (55), Expect = 4.6
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 5 KIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYM 46
K+ + G G +G A + Q+ ++ +V V D +
Sbjct: 7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLE 51
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 25.4 bits (55), Expect = 5.2
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 5 KIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYM-----FKYDSVHGQW 56
KI + G G++G A IL + D++ LV V + + + M + +
Sbjct: 22 KITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADK 81
Query: 57 KHHELKVKDDKTLLFG 72
+ + G
Sbjct: 82 DYSVTANSKIVVVTAG 97
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 25.3 bits (55), Expect = 5.8
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 12 GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71
GR+ VA L + V +V IT + KY+ + +F
Sbjct: 17 GRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIF 76
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 25.3 bits (55), Expect = 6.9
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 191 DGPSSKDWRGGRAASFNIIPSSTGAAKVFFSRLRMFV 227
P WRG +N+ P TG +++M +
Sbjct: 195 SAPPDSSWRGSLKVPYNVGPGFTGNFST--QKVKMHI 229
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 25.0 bits (54), Expect = 7.0
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYM 46
+ + KI + G G +G A IL + D++ LV + + + +
Sbjct: 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQ 65
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.2 bits (54), Expect = 7.5
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 41 DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA-ETGAEYVVE 99
+ Y D+ E + K L VTV G E++P +
Sbjct: 129 GQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIA 188
Query: 100 STGVFTDKDKAAA 112
+ A
Sbjct: 189 GRSIRDAASPVEA 201
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 25.0 bits (53), Expect = 7.5
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
KIGI G G++ + + + Q +++ + + + + ++ Q
Sbjct: 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID 56
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 24.6 bits (53), Expect = 8.2
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 11/127 (8%)
Query: 3 KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+ K+ I G G +G A + R +++ L+ V + M GQ +
Sbjct: 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-LPFMGQMSLY 59
Query: 60 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119
D K VT R P ET + ++ + + +
Sbjct: 60 AGDYSDVKDCDVIV--VTAGANRKPG-----ETRLDLAKKNVMIAKEVTQNIMKYYNHGV 112
Query: 120 KVIISAP 126
+++S P
Sbjct: 113 ILVVSNP 119
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 25.1 bits (55), Expect = 9.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 147 NIVSNASCTTNCLAPLAKVIH 167
N S A+ CL L++ IH
Sbjct: 139 NFGSVATRDIECLQSLSRRIH 159
>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal domain
{Murine cytomegalovirus (MCMV) [TaxId: 10366]}
Length = 232
Score = 24.8 bits (54), Expect = 10.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 132 MFVVGVNENEYKPELNIVSNASCTTNCLAPLAKV 165
M +V + ++ P + + C +NC L
Sbjct: 1 MKIVRASRDQSAPVYGPRAGSQCMSNCFTFLHTC 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.402
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 918,254
Number of extensions: 41183
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 78
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)