Query 025477
Match_columns 252
No_of_seqs 153 out of 944
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 4.8E-13 1E-17 93.5 6.8 53 65-117 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 1.5E-12 3.2E-17 91.6 7.0 57 64-120 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 6E-12 1.3E-16 86.8 6.7 52 70-121 1-52 (53)
4 KOG1318 Helix loop helix trans 98.8 1.1E-08 2.4E-13 97.7 7.9 59 63-121 231-290 (411)
5 KOG2483 Upstream transcription 98.6 1.2E-07 2.6E-12 84.8 9.0 71 61-131 55-125 (232)
6 KOG1319 bHLHZip transcription 98.6 1E-07 2.2E-12 82.4 7.5 68 65-132 62-133 (229)
7 KOG4029 Transcription factor H 98.1 4.8E-06 1E-10 74.0 5.0 62 63-124 107-169 (228)
8 PLN03217 transcription factor 98.1 1.2E-05 2.6E-10 61.3 6.2 56 78-133 20-78 (93)
9 KOG3561 Aryl-hydrocarbon recep 98.0 4.4E-06 9.6E-11 85.9 4.6 58 59-119 14-75 (803)
10 KOG4304 Transcriptional repres 97.9 8.3E-06 1.8E-10 73.9 3.4 62 59-120 26-92 (250)
11 cd04895 ACT_ACR_1 ACT domain-c 97.8 0.00039 8.5E-09 51.6 10.0 66 169-236 3-68 (72)
12 cd04897 ACT_ACR_3 ACT domain-c 97.7 0.00058 1.3E-08 51.1 9.9 66 169-236 3-72 (75)
13 KOG0561 bHLH transcription fac 97.6 5.4E-05 1.2E-09 69.9 4.4 66 65-131 60-125 (373)
14 cd04896 ACT_ACR-like_3 ACT dom 97.6 0.00053 1.1E-08 51.4 8.5 65 169-236 2-72 (75)
15 KOG3960 Myogenic helix-loop-he 97.5 0.0004 8.8E-09 62.7 7.8 68 62-131 115-183 (284)
16 cd04927 ACT_ACR-like_2 Second 97.4 0.002 4.4E-08 47.7 9.9 47 169-216 2-48 (76)
17 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0044 9.5E-08 45.1 10.4 66 170-236 4-69 (73)
18 cd04925 ACT_ACR_2 ACT domain-c 97.0 0.013 2.8E-07 43.0 10.4 66 169-236 2-72 (74)
19 cd04928 ACT_TyrKc Uncharacteri 96.9 0.014 3E-07 43.0 9.6 63 171-236 5-67 (68)
20 KOG3910 Helix loop helix trans 96.8 0.0016 3.4E-08 63.9 4.7 74 50-123 505-585 (632)
21 cd04899 ACT_ACR-UUR-like_2 C-t 96.7 0.029 6.3E-07 39.6 9.9 64 170-236 3-66 (70)
22 KOG2588 Predicted DNA-binding 96.6 0.0012 2.6E-08 68.9 2.6 66 64-131 275-340 (953)
23 cd04926 ACT_ACR_4 C-terminal 96.6 0.039 8.4E-07 40.2 9.8 59 176-236 9-67 (72)
24 PF13740 ACT_6: ACT domain; PD 96.2 0.049 1.1E-06 40.0 8.7 64 168-236 3-66 (76)
25 cd04893 ACT_GcvR_1 ACT domains 96.0 0.097 2.1E-06 38.6 9.5 64 168-236 2-65 (77)
26 cd04873 ACT_UUR-ACR-like ACT d 95.7 0.24 5.3E-06 34.4 10.0 64 170-236 3-66 (70)
27 cd04875 ACT_F4HF-DF N-terminal 95.4 0.18 3.8E-06 36.5 8.6 65 170-236 2-67 (74)
28 KOG4447 Transcription factor T 95.3 0.013 2.8E-07 49.6 2.7 56 63-119 76-131 (173)
29 cd04869 ACT_GcvR_2 ACT domains 95.2 0.27 5.8E-06 35.7 9.1 63 170-236 2-70 (81)
30 PRK00194 hypothetical protein; 95.1 0.17 3.7E-06 37.9 8.2 66 168-236 4-69 (90)
31 cd04872 ACT_1ZPV ACT domain pr 95.1 0.17 3.6E-06 38.0 8.0 66 168-236 2-67 (88)
32 cd04870 ACT_PSP_1 CT domains f 95.0 0.24 5.3E-06 36.0 8.5 63 170-236 2-64 (75)
33 PF01842 ACT: ACT domain; Int 95.0 0.33 7.1E-06 33.3 8.8 61 170-236 3-65 (66)
34 PRK05007 PII uridylyl-transfer 95.0 0.13 2.8E-06 54.3 9.6 68 167-236 808-878 (884)
35 KOG4395 Transcription factor A 94.9 0.11 2.4E-06 47.3 7.5 59 63-121 172-230 (285)
36 PF13291 ACT_4: ACT domain; PD 94.6 0.18 4E-06 36.8 6.9 52 167-219 6-58 (80)
37 PRK00275 glnD PII uridylyl-tra 94.0 0.35 7.7E-06 51.2 10.2 67 168-236 815-885 (895)
38 PRK03381 PII uridylyl-transfer 93.6 0.54 1.2E-05 49.1 10.4 67 168-236 600-666 (774)
39 cd04894 ACT_ACR-like_1 ACT dom 93.5 0.44 9.5E-06 34.8 6.8 65 169-236 2-68 (69)
40 TIGR01693 UTase_glnD [Protein- 93.3 0.64 1.4E-05 48.9 10.6 67 169-236 670-740 (850)
41 cd04887 ACT_MalLac-Enz ACT_Mal 93.3 0.7 1.5E-05 32.8 7.8 59 171-233 3-62 (74)
42 PRK05092 PII uridylyl-transfer 93.2 0.87 1.9E-05 48.5 11.4 68 167-236 843-914 (931)
43 PRK01759 glnD PII uridylyl-tra 93.0 0.51 1.1E-05 49.8 9.4 67 167-235 783-852 (854)
44 PRK04435 hypothetical protein; 93.0 0.59 1.3E-05 39.0 8.0 70 163-234 65-134 (147)
45 PRK04374 PII uridylyl-transfer 92.8 0.76 1.6E-05 48.7 10.3 68 167-236 796-866 (869)
46 KOG3898 Transcription factor N 92.7 0.071 1.5E-06 48.6 2.2 57 63-119 70-126 (254)
47 TIGR01693 UTase_glnD [Protein- 92.7 0.66 1.4E-05 48.8 9.6 66 168-235 780-848 (850)
48 cd04888 ACT_PheB-BS C-terminal 92.4 0.77 1.7E-05 32.6 7.0 63 170-234 3-65 (76)
49 PRK03381 PII uridylyl-transfer 92.3 0.83 1.8E-05 47.7 9.6 65 168-236 708-772 (774)
50 cd04886 ACT_ThrD-II-like C-ter 92.2 1.2 2.5E-05 30.6 7.6 41 177-218 7-52 (73)
51 PRK05007 PII uridylyl-transfer 92.2 1.3 2.9E-05 46.9 11.2 68 168-236 702-772 (884)
52 PRK03059 PII uridylyl-transfer 91.9 0.7 1.5E-05 48.8 8.6 67 168-236 787-854 (856)
53 COG4492 PheB ACT domain-contai 91.6 1.1 2.3E-05 37.5 7.5 70 164-235 69-138 (150)
54 PRK01759 glnD PII uridylyl-tra 91.2 1.7 3.8E-05 45.9 10.7 67 169-236 679-748 (854)
55 cd04880 ACT_AAAH-PDT-like ACT 91.1 1.3 2.8E-05 31.9 7.0 58 177-235 8-67 (75)
56 COG2844 GlnD UTP:GlnB (protein 90.9 0.95 2.1E-05 47.5 8.2 55 169-225 793-847 (867)
57 cd04905 ACT_CM-PDT C-terminal 90.2 4.9 0.00011 29.3 9.5 57 177-236 10-67 (80)
58 cd02116 ACT ACT domains are co 90.0 2.1 4.6E-05 26.5 6.6 31 172-203 3-33 (60)
59 cd04874 ACT_Af1403 N-terminal 89.8 2.8 6E-05 28.8 7.6 58 170-233 3-61 (72)
60 cd04877 ACT_TyrR N-terminal AC 89.3 1.2 2.7E-05 32.1 5.6 57 170-233 3-59 (74)
61 PRK05092 PII uridylyl-transfer 88.6 4 8.6E-05 43.5 11.0 68 168-236 733-804 (931)
62 cd04876 ACT_RelA-SpoT ACT dom 88.3 2.9 6.3E-05 27.4 6.6 41 177-218 7-48 (71)
63 PRK13011 formyltetrahydrofolat 87.9 4.2 9.1E-05 37.6 9.4 68 167-236 7-74 (286)
64 PRK03059 PII uridylyl-transfer 86.9 5 0.00011 42.5 10.4 66 169-236 680-749 (856)
65 PRK04374 PII uridylyl-transfer 86.5 4.4 9.6E-05 43.0 9.7 66 170-236 693-759 (869)
66 PRK00275 glnD PII uridylyl-tra 85.8 7 0.00015 41.7 10.9 67 169-236 706-777 (895)
67 cd04879 ACT_3PGDH-like ACT_3PG 85.8 5.8 0.00013 26.8 7.1 53 177-235 8-62 (71)
68 cd04882 ACT_Bt0572_2 C-termina 85.3 4.8 0.0001 27.3 6.5 39 176-215 7-47 (65)
69 PRK13010 purU formyltetrahydro 84.5 6.2 0.00013 36.6 8.7 67 168-236 10-78 (289)
70 cd04903 ACT_LSD C-terminal ACT 84.1 7.4 0.00016 26.4 7.1 54 176-234 7-61 (71)
71 PRK07334 threonine dehydratase 84.0 6.6 0.00014 37.7 9.0 67 164-234 323-394 (403)
72 cd04878 ACT_AHAS N-terminal AC 83.9 8.4 0.00018 26.1 7.3 46 170-217 3-50 (72)
73 PRK08577 hypothetical protein; 83.6 10 0.00022 30.8 8.7 65 167-234 56-122 (136)
74 cd04881 ACT_HSDH-Hom ACT_HSDH_ 82.7 6.2 0.00013 27.3 6.3 61 170-234 3-65 (79)
75 TIGR00655 PurU formyltetrahydr 82.2 9.7 0.00021 35.1 9.0 63 169-234 2-66 (280)
76 KOG3559 Transcriptional regula 81.3 1.5 3.1E-05 42.9 3.3 43 71-116 7-53 (598)
77 cd04884 ACT_CBS C-terminal ACT 81.0 9.4 0.0002 27.0 6.8 28 176-203 7-34 (72)
78 cd04931 ACT_PAH ACT domain of 79.9 20 0.00042 27.5 8.6 44 176-219 22-65 (90)
79 cd04901 ACT_3PGDH C-terminal A 79.9 2.2 4.7E-05 29.7 3.0 53 176-234 7-59 (69)
80 cd04904 ACT_AAAH ACT domain of 79.7 18 0.00038 26.2 8.0 42 177-219 9-51 (74)
81 KOG3558 Hypoxia-inducible fact 79.2 1.6 3.4E-05 45.0 2.9 47 65-114 46-96 (768)
82 COG3830 ACT domain-containing 77.5 6.7 0.00015 30.5 5.3 69 167-239 3-71 (90)
83 PRK06027 purU formyltetrahydro 76.1 19 0.00042 33.1 8.9 67 167-236 6-74 (286)
84 cd04929 ACT_TPH ACT domain of 74.6 19 0.0004 26.5 6.9 43 177-219 9-51 (74)
85 PRK11589 gcvR glycine cleavage 74.4 25 0.00054 30.6 8.7 67 168-236 96-166 (190)
86 PF13710 ACT_5: ACT domain; PD 73.9 7.5 0.00016 27.6 4.5 57 178-236 2-58 (63)
87 COG2844 GlnD UTP:GlnB (protein 73.4 19 0.00041 38.2 8.9 70 164-236 683-755 (867)
88 cd04908 ACT_Bt0572_1 N-termina 73.1 28 0.00061 24.2 8.4 39 176-217 9-47 (66)
89 cd04902 ACT_3PGDH-xct C-termin 69.9 18 0.0004 25.0 5.8 54 176-234 7-61 (73)
90 cd04909 ACT_PDH-BS C-terminal 67.8 34 0.00074 23.6 6.8 28 176-203 9-36 (69)
91 PRK11152 ilvM acetolactate syn 66.6 35 0.00076 25.4 6.9 58 176-236 11-68 (76)
92 cd04889 ACT_PDH-BS-like C-term 66.2 34 0.00073 22.8 6.3 39 177-216 7-46 (56)
93 PRK11589 gcvR glycine cleavage 66.0 21 0.00045 31.1 6.4 65 167-236 8-72 (190)
94 TIGR00119 acolac_sm acetolacta 64.2 32 0.0007 29.1 7.1 57 176-236 9-67 (157)
95 KOG4447 Transcription factor T 64.0 8.9 0.00019 32.7 3.5 48 70-118 27-74 (173)
96 PRK10872 relA (p)ppGpp synthet 63.8 30 0.00065 36.4 8.1 63 167-233 666-730 (743)
97 KOG3560 Aryl-hydrocarbon recep 63.5 6.7 0.00014 39.7 3.1 37 75-114 35-75 (712)
98 cd04885 ACT_ThrD-I Tandem C-te 63.1 43 0.00093 23.5 6.6 43 176-219 6-48 (68)
99 cd04883 ACT_AcuB C-terminal AC 62.6 49 0.0011 22.9 8.7 42 176-217 9-51 (72)
100 PRK11895 ilvH acetolactate syn 61.7 43 0.00093 28.5 7.4 62 170-236 5-68 (161)
101 PRK11092 bifunctional (p)ppGpp 60.9 32 0.0007 35.9 7.7 51 167-219 626-677 (702)
102 PRK00227 glnD PII uridylyl-tra 60.1 62 0.0013 33.8 9.5 59 176-236 555-613 (693)
103 CHL00100 ilvH acetohydroxyacid 59.3 51 0.0011 28.4 7.5 64 170-236 5-68 (174)
104 PF05088 Bac_GDH: Bacterial NA 59.1 67 0.0015 36.6 10.1 69 166-236 488-561 (1528)
105 TIGR00691 spoT_relA (p)ppGpp s 58.3 38 0.00082 35.2 7.7 51 167-219 610-661 (683)
106 cd04868 ACT_AK-like ACT domain 58.3 46 0.00099 21.2 6.1 26 178-203 13-38 (60)
107 cd04930 ACT_TH ACT domain of t 52.2 54 0.0012 26.2 6.1 42 177-219 50-92 (115)
108 PRK08198 threonine dehydratase 51.3 93 0.002 29.6 8.7 66 165-233 325-394 (404)
109 PF06005 DUF904: Protein of un 50.9 34 0.00074 25.3 4.4 27 105-131 12-38 (72)
110 PRK11191 RNase E inhibitor pro 49.0 74 0.0016 26.5 6.6 70 179-251 43-114 (138)
111 KOG3582 Mlx interactors and re 48.2 4.5 9.7E-05 41.9 -0.9 69 64-132 650-720 (856)
112 PF05687 DUF822: Plant protein 48.1 23 0.0005 29.9 3.4 30 61-90 7-36 (150)
113 smart00338 BRLZ basic region l 45.6 33 0.00072 24.2 3.6 27 108-134 23-49 (65)
114 COG3074 Uncharacterized protei 44.9 40 0.00087 25.2 3.9 29 105-133 12-40 (79)
115 PF14689 SPOB_a: Sensor_kinase 44.7 64 0.0014 22.8 4.9 44 70-123 13-56 (62)
116 TIGR01127 ilvA_1Cterm threonin 44.3 1.3E+02 0.0027 28.5 8.3 67 164-233 302-372 (380)
117 cd04912 ACT_AKiii-LysC-EC-like 43.6 1.2E+02 0.0026 21.7 7.3 36 177-215 13-48 (75)
118 cd04892 ACT_AK-like_2 ACT doma 43.4 90 0.0019 20.2 5.9 27 177-203 12-38 (65)
119 cd04919 ACT_AK-Hom3_2 ACT doma 43.4 1E+02 0.0022 20.8 5.8 27 177-203 13-39 (66)
120 PRK11899 prephenate dehydratas 43.0 2E+02 0.0043 26.5 9.2 62 176-241 202-264 (279)
121 PRK06382 threonine dehydratase 42.9 1.4E+02 0.0031 28.6 8.5 53 165-218 328-384 (406)
122 cd04891 ACT_AK-LysC-DapG-like_ 42.8 90 0.0019 20.0 6.4 29 175-203 8-36 (61)
123 PF00170 bZIP_1: bZIP transcri 42.6 41 0.00089 23.6 3.7 25 109-133 24-48 (64)
124 PRK11898 prephenate dehydratas 42.4 1.9E+02 0.0042 26.5 9.0 60 177-240 206-266 (283)
125 PF02344 Myc-LZ: Myc leucine z 42.3 29 0.00062 21.9 2.4 20 70-89 10-29 (32)
126 PRK06737 acetolactate synthase 41.1 1E+02 0.0022 23.0 5.7 57 176-236 10-68 (76)
127 PRK13562 acetolactate synthase 40.0 97 0.0021 23.7 5.5 58 176-236 10-69 (84)
128 PRK15422 septal ring assembly 39.1 62 0.0013 24.6 4.2 28 106-133 13-40 (79)
129 cd04906 ACT_ThrD-I_1 First of 38.6 1.6E+02 0.0034 21.7 8.0 48 169-219 3-50 (85)
130 cd04922 ACT_AKi-HSDH-ThrA_2 AC 37.7 1.2E+02 0.0027 20.2 5.9 27 177-203 13-39 (66)
131 PRK15385 magnesium transport p 37.6 2.9E+02 0.0062 24.9 9.0 65 168-233 143-210 (225)
132 cd04890 ACT_AK-like_1 ACT doma 36.7 1.3E+02 0.0029 20.2 6.2 35 178-215 13-47 (62)
133 COG0317 SpoT Guanosine polypho 35.0 1.2E+02 0.0025 31.9 6.9 52 166-219 626-678 (701)
134 PRK10622 pheA bifunctional cho 35.0 2E+02 0.0043 27.8 8.1 62 176-241 305-367 (386)
135 cd04913 ACT_AKii-LysC-BS-like_ 34.6 1.4E+02 0.0031 20.0 6.6 33 170-202 4-36 (75)
136 COG3978 Acetolactate synthase 34.2 1.8E+02 0.004 22.3 6.1 57 177-236 12-68 (86)
137 PRK14639 hypothetical protein; 33.8 1.9E+02 0.0041 23.9 6.8 51 185-236 3-54 (140)
138 COG0788 PurU Formyltetrahydrof 33.3 2.6E+02 0.0057 26.1 8.1 67 168-236 8-75 (287)
139 cd04921 ACT_AKi-HSDH-ThrA-like 32.5 1.8E+02 0.0039 20.5 6.4 27 177-203 13-39 (80)
140 PF10393 Matrilin_ccoil: Trime 32.5 1.2E+02 0.0025 20.8 4.4 28 106-133 18-45 (47)
141 PF14992 TMCO5: TMCO5 family 31.8 72 0.0016 29.7 4.3 34 98-131 138-171 (280)
142 TIGR01834 PHA_synth_III_E poly 31.3 1.2E+02 0.0025 28.9 5.7 27 106-132 291-317 (320)
143 PF09789 DUF2353: Uncharacteri 31.1 1.9E+02 0.0041 27.5 7.1 35 98-132 66-100 (319)
144 PF14193 DUF4315: Domain of un 30.4 1E+02 0.0022 23.5 4.3 27 106-132 10-36 (83)
145 cd04932 ACT_AKiii-LysC-EC_1 AC 29.9 2.2E+02 0.0047 20.6 8.2 60 169-236 3-65 (75)
146 TIGR01268 Phe4hydrox_tetr phen 29.7 2.2E+02 0.0048 28.2 7.5 44 176-219 24-67 (436)
147 PF08826 DMPK_coil: DMPK coile 29.4 1.3E+02 0.0028 21.6 4.4 27 105-131 33-59 (61)
148 COG0013 AlaS Alanyl-tRNA synth 29.2 7.7E+02 0.017 26.8 14.9 73 161-236 770-843 (879)
149 PRK14640 hypothetical protein; 28.1 2.7E+02 0.0058 23.2 6.9 59 185-246 12-71 (152)
150 cd04918 ACT_AK1-AT_2 ACT domai 26.9 2.1E+02 0.0045 19.8 5.2 27 177-203 12-38 (65)
151 PRK08526 threonine dehydratase 26.6 3.7E+02 0.0081 25.9 8.5 54 164-219 323-381 (403)
152 PRK14646 hypothetical protein; 26.4 3.9E+02 0.0084 22.4 8.1 60 184-246 12-74 (155)
153 PF09789 DUF2353: Uncharacteri 26.2 96 0.0021 29.4 4.2 37 97-134 183-219 (319)
154 PRK10222 PTS system L-ascorbat 25.9 2.7E+02 0.0058 20.8 5.9 58 184-246 6-82 (85)
155 PRK14630 hypothetical protein; 25.0 3.5E+02 0.0075 22.4 7.0 51 185-236 14-65 (143)
156 cd04933 ACT_AK1-AT_1 ACT domai 24.9 2.9E+02 0.0063 20.4 7.8 44 169-215 3-48 (78)
157 PRK14647 hypothetical protein; 24.2 4E+02 0.0086 22.3 7.3 55 186-245 15-72 (159)
158 PF04420 CHD5: CHD5-like prote 23.5 2.7E+02 0.0059 23.3 6.1 51 70-134 39-89 (161)
159 cd04935 ACT_AKiii-DAPDC_1 ACT 23.3 2.9E+02 0.0063 19.9 7.4 36 177-215 13-48 (75)
160 PRK05771 V-type ATP synthase s 23.3 3.6E+02 0.0079 27.5 8.1 21 74-94 49-69 (646)
161 cd04937 ACT_AKi-DapG-BS_2 ACT 23.0 2.5E+02 0.0055 19.1 6.4 24 177-200 13-36 (64)
162 PRK14637 hypothetical protein; 22.9 4.5E+02 0.0098 21.9 7.5 56 180-236 9-65 (151)
163 PRK15364 pathogenicity island 22.4 1.1E+02 0.0024 26.9 3.5 42 71-115 67-109 (196)
164 COG0077 PheA Prephenate dehydr 21.8 6.6E+02 0.014 23.4 8.9 57 177-236 203-260 (279)
165 PF07544 Med9: RNA polymerase 21.4 3.4E+02 0.0074 20.2 5.7 44 83-131 36-79 (83)
166 PF07716 bZIP_2: Basic region 21.4 1.7E+02 0.0036 19.9 3.7 22 111-132 25-46 (54)
167 PF08946 Osmo_CC: Osmosensory 21.4 1.6E+02 0.0034 20.2 3.3 27 106-132 10-40 (46)
168 PF01166 TSC22: TSC-22/dip/bun 20.5 1.8E+02 0.004 20.8 3.7 24 110-133 20-43 (59)
169 cd04916 ACT_AKiii-YclM-BS_2 AC 20.4 2.7E+02 0.0059 18.4 5.9 27 177-203 13-39 (66)
170 PRK14638 hypothetical protein; 20.3 4.6E+02 0.01 21.8 6.8 50 186-236 15-66 (150)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.42 E-value=4.8e-13 Score=93.49 Aligned_cols=53 Identities=38% Similarity=0.684 Sum_probs=48.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCChhHHHHHHHHHHHHHH
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVA--DQTKKLSIPATVSRVLKYIPELQ 117 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~--~~~dK~Si~~~l~~Ai~YIk~Lq 117 (252)
+|..|+..||+||..||+.|..|+.+||.. ....|.+..+||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999996 35668888889999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.38 E-value=1.5e-12 Score=91.59 Aligned_cols=57 Identities=39% Similarity=0.613 Sum_probs=50.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 025477 64 VKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQV 120 (252)
Q Consensus 64 ~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v 120 (252)
.++..|+.+||+||++||+.|..|+++||......|.+...||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999954556666667999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.31 E-value=6e-12 Score=86.77 Aligned_cols=52 Identities=44% Similarity=0.682 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 025477 70 NASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVE 121 (252)
Q Consensus 70 ~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~ 121 (252)
+..||+||++||+.|..|+++||......|.+..++|..||+||++|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999976544556666679999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.81 E-value=1.1e-08 Score=97.75 Aligned_cols=59 Identities=32% Similarity=0.414 Sum_probs=49.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQT-KKLSIPATVSRVLKYIPELQQQVE 121 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~-dK~Si~~~l~~Ai~YIk~Lq~~v~ 121 (252)
-.||..||++||+||.+||+.+..|..|||..+-. .|+.+..||+.+++||++||+..+
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999988432 245555569999999999997665
No 5
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.65 E-value=1.2e-07 Score=84.82 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=57.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 61 PTMVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 61 ~~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
.....|..||+.||+||.++++.|..|+.+||......+-+.+.+|..|..||+.|+....+.++..+++.
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34668899999999999999999999999999986433333677899999999999987666655554443
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.63 E-value=1e-07 Score=82.38 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=59.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVADQTK----KLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~d----K~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
+|..|...||+||+-||..|..|..|||.....+ |.|...||..+|+||..|.+++..-+++...|.+
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999987777 8888899999999999999887777666555543
No 7
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.07 E-value=4.8e-06 Score=74.04 Aligned_cols=62 Identities=32% Similarity=0.426 Sum_probs=56.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQ-TKKLSIPATVSRVLKYIPELQQQVERLM 124 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~-~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~ 124 (252)
...+..+|+.||+|=+.+|..|..||.+||.... ..|.|+.++|.-||.||..|++-++.-.
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 5568889999999999999999999999999887 7899999999999999999998877654
No 8
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.05 E-value=1.2e-05 Score=61.34 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 78 KKINSLYSSLRSLLPVADQ---TKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 78 ~~mn~~f~~LrsllP~~~~---~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
++|+++.+.|+.|||.... .+|.|-..+|.++.+||+.|+.+|..|.++..+|...
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999998643 4689999999999999999999999999999988863
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.03 E-value=4.4e-06 Score=85.86 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=49.3
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCChhHHHHHHHHHHHHHHHH
Q 025477 59 GDPTMVKKLYHNASERDRRKKINSLYSSLRSLLPVAD----QTKKLSIPATVSRVLKYIPELQQQ 119 (252)
Q Consensus 59 ~~~~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~----~~dK~Si~~~l~~Ai~YIk~Lq~~ 119 (252)
.+..-.+|..|+.+||+||++||.++..|.+|||... |+||.+ ||..||.+|+.+++.
T Consensus 14 d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~t---VLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 14 DSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLT---VLRMAVDHLRLIKEQ 75 (803)
T ss_pred cchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHH---HHHHHHHHHHHHhhh
Confidence 3344557999999999999999999999999999875 566666 588999999999885
No 10
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.90 E-value=8.3e-06 Score=73.94 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=52.0
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCChhHHHHHHHHHHHHHHHHH
Q 025477 59 GDPTMVKKLYHNASERDRRKKINSLYSSLRSLLPVADQT-----KKLSIPATVSRVLKYIPELQQQV 120 (252)
Q Consensus 59 ~~~~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~-----dK~Si~~~l~~Ai~YIk~Lq~~v 120 (252)
+.....+|..|-..||+||.+||+.+..|+.|||...++ .|.-+.+||.-|++|++.||...
T Consensus 26 ~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 26 SKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 444577899999999999999999999999999987555 35556667999999999998643
No 11
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00039 Score=51.64 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+|+|.+. +++|+|.+|.++|.++||+|..|.+++ .|+++.-+|.+.=.++..+.-....+.|+..+
T Consensus 3 viev~a~-DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 3 LVKVDSA-RKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEEC-CcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 4677765 789999999999999999999999999 99999999998755555565455555565554
No 12
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00058 Score=51.13 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=54.3
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH----HHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC----EVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~----~~L~~~L~~~i 236 (252)
+|.|.|. +++++|.+|..+|-++|++|.+|.+++ .|+++.-+|++.=.++..+.. +.|+++|..++
T Consensus 3 vveV~~~-DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 3 VVTVQCR-DRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEeC-CcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 4677775 789999999999999999999999999 999999999997665555543 35667777766
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.64 E-value=5.4e-05 Score=69.90 Aligned_cols=66 Identities=33% Similarity=0.506 Sum_probs=53.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
+|.--|--||+|=.-||..|.+||+|||... ..|.|+..||..+.+||.+|+...-+|-.+..+++
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elK 125 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQLEGHKTELLPQNGELK 125 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHHhcccccccccchHH
Confidence 4555567799999999999999999999873 67999999999999999999987766654443333
No 14
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00053 Score=51.35 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=51.7
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEe--eeeCCEEEEEEEEEecCCCCCC----HHHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFF--ESFQGRVFYNLHLQVKSTYGLD----CEVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S--~~~~~~v~~ti~akv~~~~~~~----~~~L~~~L~~~i 236 (252)
+++|.+. +++|+|.+|.++|.++|++|.+|-++ + .|+++.-+|.+...+ ..+. .+.|.++|...+
T Consensus 2 vlev~a~-DRpGLL~~i~~~l~~~~l~i~~AkI~~~T-~Gerv~D~Fyv~~~g-~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCV-DQKGLLYDILRTSKDCNIQISYGRFSSKV-KGYREVDLFIVQSDG-KKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeC-CcccHHHHHHHHHHHCCeEEEEEEEecCc-ccCEEEEEEEEeCCC-CccCCHHHHHHHHHHHHHHh
Confidence 4677765 78999999999999999999999999 9 999999888884333 2332 345777777776
No 15
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.49 E-value=0.0004 Score=62.74 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=56.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 62 TMVKKLYHNASERDRRKKINSLYSSLRSL-LPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 62 ~~~~k~~H~~~ER~RR~~mn~~f~~Lrsl-lP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
.+.+|..-.+.||+|=+|+|+.|.+|+-- .++. +-++.+++||..||.||..||.-++++.+....+.
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP--NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~~ 183 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNP--NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGLA 183 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--cccccHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 36678888899999999999999999753 4444 45788899999999999999999999887655553
No 16
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.002 Score=47.70 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEE
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQ 216 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~ak 216 (252)
+++|.+. +++++|+++..+|..+|+.|++|.++++.||.++-++.+.
T Consensus 2 ~~ei~~~-Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~ 48 (76)
T cd04927 2 LLKLFCS-DRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFIT 48 (76)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEe
Confidence 5777775 7899999999999999999999999965789999888886
No 17
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0044 Score=45.14 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=48.7
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|.|.+. +++++|+++..+|..+|++|++|.+.+..+|.++-++++.-.++.....+...++|++.+
T Consensus 4 i~v~~~-Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L 69 (73)
T cd04900 4 VFIYTP-DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69 (73)
T ss_pred EEEEec-CCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHH
Confidence 455554 788999999999999999999999988336888888888643344444444445555555
No 18
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.013 Score=42.99 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC-CCCCCH----HHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS-TYGLDC----EVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~-~~~~~~----~~L~~~L~~~i 236 (252)
+|+|.+. +++++|.+|..+|.++|+.|++|.+++ .|+.++-++++.=.+ ...+.. +.|.+.|.+++
T Consensus 2 ~~~v~~~-Dr~gLl~~i~~~l~~~~lnI~~A~i~t-~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGT-DRPGLLSEVFAVLADLHCNVVEARAWT-HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHCCCcEEEEEEEE-ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 4566665 789999999999999999999999998 899999888876332 222322 34555555544
No 19
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.014 Score=42.97 Aligned_cols=63 Identities=16% Similarity=0.050 Sum_probs=50.9
Q ss_pred EEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 171 QISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 171 ~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.|.+. .++++|.++..+|..+||.|++|.+.++.+|.++-++.+.=. .+-+...|.++|++.+
T Consensus 5 ~V~~~-Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~--~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 5 TFAAG-DKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW--KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEC-CCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC--CccchHHHHHHHHHhh
Confidence 34444 688999999999999999999999998667888888887733 3457778888888765
No 20
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.79 E-value=0.0016 Score=63.92 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=59.4
Q ss_pred ccccCCCCCCCcc------hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CChhHHHHHHHHHHHHHHHHHHH
Q 025477 50 RSASFSANSGDPT------MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKK-LSIPATVSRVLKYIPELQQQVER 122 (252)
Q Consensus 50 ~s~~~~~~s~~~~------~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK-~Si~~~l~~Ai~YIk~Lq~~v~~ 122 (252)
++|...+...+|+ -.+|+..|+.||-|-+.||+.|..|--+.-...|.+| .+++.||..|+.-|-.|+++|++
T Consensus 505 ~sS~dedddl~peqkaeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 505 RSSSDEDDDLNPEQKAEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred cCCcccccccChhhhhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 3468999999999999999999999988877666766 68888999999999999999987
Q ss_pred H
Q 025477 123 L 123 (252)
Q Consensus 123 L 123 (252)
-
T Consensus 585 R 585 (632)
T KOG3910|consen 585 R 585 (632)
T ss_pred c
Confidence 3
No 21
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.73 E-value=0.029 Score=39.63 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=47.0
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|.|.+. .++++|.+++.+|.++|+.|.++.+.+ .++.++.+++++-..+...+. ...++|++.+
T Consensus 3 l~v~~~-d~~gll~~i~~~l~~~~~~I~~~~~~~-~~~~~~~~f~i~~~~~~~~~~-~~~~~i~~~l 66 (70)
T cd04899 3 LELTAL-DRPGLLADVTRVLAELGLNIHSAKIAT-LGERAEDVFYVTDADGQPLDP-ERQEALRAAL 66 (70)
T ss_pred EEEEEc-CCccHHHHHHHHHHHCCCeEEEEEEEe-cCCEEEEEEEEECCCCCcCCH-HHHHHHHHHH
Confidence 455554 678999999999999999999999998 788888888888655433333 2333344443
No 22
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=96.61 E-value=0.0012 Score=68.87 Aligned_cols=66 Identities=29% Similarity=0.418 Sum_probs=53.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 64 VKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 64 ~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
.+|..||..||+=|--||+++..|+.+||... -|.....++..||+||++|+...+.|......+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~--aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTE--AKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccH--hhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 45899999999999999999999999999764 2444445689999999999987777765554444
No 23
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.58 E-value=0.039 Score=40.17 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.+++++|.+|..+|.++|+.|+++.+.+ .++.++.++++.=.+....+. ...++|++.+
T Consensus 9 ~D~~Gll~~i~~~l~~~~lnI~sa~i~t-~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l 67 (72)
T cd04926 9 EDRVGLLSDVTRVFRENGLTVTRAEIST-QGDMAVNVFYVTDANGNPVDP-KTIEAVRQEI 67 (72)
T ss_pred CCccCHHHHHHHHHHHCCcEEEEEEEec-CCCeEEEEEEEECCCCCcCCH-HHHHHHHHHh
Confidence 3688999999999999999999999998 688888888886333333333 4556677666
No 24
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.22 E-value=0.049 Score=40.01 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
++|++.+. ++++.+..+..+|.++|..+++++.++ .++.+...+.+.+.. -..+.|...|..+-
T Consensus 3 ~vItv~G~-DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~~---~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 3 LVITVVGP-DRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIPE---DSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEESH---HHHHHHHHHHHHHH
T ss_pred EEEEEEec-CCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeCc---ccHHHHHHHHHHHH
Confidence 56777764 789999999999999999999999999 999988888888763 25567777777765
No 25
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.02 E-value=0.097 Score=38.57 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
++|++.|. +++|+..+|-..|.++|..+++++... .++.+++.+.+.+.. .+.+.|.+.|..+-
T Consensus 2 ~iltv~g~-Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~~---~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGT-DRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGSW---DAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeC-CCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEecc---ccHHHHHHHHHHHH
Confidence 45677775 789999999999999999999999999 899999888888752 46778888888765
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.65 E-value=0.24 Score=34.39 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=44.1
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+.|.+. .+++.|.++..+|.++|+.|.++.+.+ .++.....+++.-.+... ...+-.++|++.+
T Consensus 3 l~i~~~-d~~g~l~~i~~~l~~~~~~I~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l 66 (70)
T cd04873 3 VEVYAP-DRPGLLADITRVLADLGLNIHDARIST-TGERALDVFYVTDSDGRP-LDPERIARLEEAL 66 (70)
T ss_pred EEEEeC-CCCCHHHHHHHHHHHCCCeEEEEEEee-cCCEEEEEEEEECCCCCc-CCHHHHHHHHHHH
Confidence 445554 678999999999999999999999998 677666677766443222 2223444444444
No 27
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.35 E-value=0.18 Score=36.47 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=48.3
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCC-CCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTY-GLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~-~~~~~~L~~~L~~~i 236 (252)
|.+.|. +++|++.+|.+.|-++|+.+++.+..+ ..+.-.+.+.+++.... ..+.+.|.+.|..+.
T Consensus 2 i~v~g~-D~~Giv~~it~~l~~~g~nI~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCP-DRPGIVAAVSGFLAEHGGNIVESDQFV-DPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred EEEEcC-CCCCHHHHHHHHHHHcCCCEEeeeeee-cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 556664 789999999999999999999999885 33322344455554433 267889999999877
No 28
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.33 E-value=0.013 Score=49.57 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=49.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQ 119 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~ 119 (252)
..++..|+..||+|=.-+|+.|.+||..+|-.. .||.|..-+|.-|.-||.-|-+-
T Consensus 76 q~qrv~anvrerqRtqsLn~AF~~lr~iiptlP-sdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 76 QKQRVMANVRERQRTQSLNEAFAALRKIIPTLP-SDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCC-ccccccccchhhcccCCchhhhc
Confidence 568999999999999999999999999999874 68988888899999999887543
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.15 E-value=0.27 Score=35.73 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=50.0
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC------CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ------GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~------~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|.+.|. +++|++.+|-+.|.++|+.+.+.+..+ .+ +.++..+.+.+. ...+.+.|.+.|..+.
T Consensus 2 l~v~g~-D~~Giv~~it~~l~~~~~nI~~~~~~~-~~~~~~~~~~~~~~~~v~~p--~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGN-DRPGIVHEVTQFLAQRNINIEDLSTET-YSAPMSGTPLFKAQATLALP--AGTDLDALREELEELC 70 (81)
T ss_pred EEEEeC-CCCCHHHHHHHHHHHcCCCeEEeEeee-ecCCCCCcceEEEEEEEecC--CCCCHHHHHHHHHHHH
Confidence 556665 688999999999999999999999988 66 445555666554 3467889999998877
No 30
>PRK00194 hypothetical protein; Validated
Probab=95.13 E-value=0.17 Score=37.90 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=53.2
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++.+.|. +++|.+.++.+.|-++|+.|++.+..+ .++.++..+.+.... ...+.+.|.+.|..+.
T Consensus 4 ~~ltv~g~-DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~-~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 4 AIITVIGK-DKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISE-SKKDFAELKEELEELG 69 (90)
T ss_pred EEEEEEcC-CCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecC-CCCCHHHHHHHHHHHH
Confidence 46777765 689999999999999999999999998 788777766776543 2356788998888876
No 31
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.07 E-value=0.17 Score=37.96 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=54.0
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.+|.+.|. +++|++++|.+.|-++|+.+++++..+ .++.++..+.+.+.. ...+.+.|.+.|..+.
T Consensus 2 ~vl~i~g~-D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGK-DRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-SNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcC-CCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-CCCCHHHHHHHHHHHH
Confidence 35677765 789999999999999999999999998 888777777776543 2467889999988877
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.04 E-value=0.24 Score=36.01 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=49.9
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|++.+ ++++|...++-+.|-++|+.+.+.+.++ .++.+...+.+.+. ...+.+.|.+.|..+.
T Consensus 2 vtv~G-~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTG-PDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIP--DSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcC--CCCCHHHHHHHHHHHH
Confidence 45554 4789999999999999999999999888 78775555544443 3467889999998887
No 33
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=95.01 E-value=0.33 Score=33.32 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=43.1
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCC--EEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQG--RVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~--~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|.+.|. .++|.|.++.++|.++|+.|.++.... .++ ..++.++.. . ....+.+.++|+++.
T Consensus 3 v~v~~~-drpG~l~~v~~~la~~~inI~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 3 VRVIVP-DRPGILADVTEILADHGINIDSISQSS-DKDGVGIVFIVIVV-D---EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEE-TSTTHHHHHHHHHHHTTEEEEEEEEEE-ESSTTEEEEEEEEE-E---GHGHHHHHHHHHHHT
T ss_pred EEEEcC-CCCCHHHHHHHHHHHcCCCHHHeEEEe-cCCCceEEEEEEEC-C---CCCHHHHHHHHHccc
Confidence 445554 688999999999999999999999999 665 222222222 1 245667888887753
No 34
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.99 E-value=0.13 Score=54.35 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=53.3
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH---HHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC---EVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~---~~L~~~L~~~i 236 (252)
--+|+|.+. +++|+|++|.++|.++|++|.+|-|+| .|+++.-+|.+.-..+..++. +.|+++|...+
T Consensus 808 ~TvlEV~a~-DRpGLL~~I~~~l~~~~l~I~~AkI~T-~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 808 RSYMELIAL-DQPGLLARVGKIFADLGISLHGARITT-IGERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred eEEEEEEeC-CchHHHHHHHHHHHHCCcEEEEEEEec-cCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 346778765 789999999999999999999999999 999999888887544444553 34555555555
No 35
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=94.86 E-value=0.11 Score=47.26 Aligned_cols=59 Identities=34% Similarity=0.417 Sum_probs=52.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVE 121 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~ 121 (252)
..++..-++.||+|=..+|..|..||..+|..+...|.|.-++|.-|-.||--|-..++
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 34677889999999999999999999999999988899999999999999988766553
No 36
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=94.56 E-value=0.18 Score=36.82 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=41.1
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-CCEEEEEEEEEecC
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-QGRVFYNLHLQVKS 219 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-~~~v~~ti~akv~~ 219 (252)
.+.+.|.+. +++|+|.+|..++.+.|+.+.++++.... ++....+|.++|.+
T Consensus 6 ~~~l~i~~~-dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 6 PVRLRIEAE-DRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEE-cCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 455666654 67899999999999999999999999832 56788899999876
No 37
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.01 E-value=0.35 Score=51.25 Aligned_cols=67 Identities=18% Similarity=0.059 Sum_probs=53.0
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH----HHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC----EVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~----~~L~~~L~~~i 236 (252)
.+|.|.+. +++++|++|..+|..+|+.|++|.|+| .|+++.-+|.+.-.++..+.. +.|.++|..++
T Consensus 815 T~i~V~a~-DrpGLLa~I~~~L~~~~l~I~~AkI~T-~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 815 TVLEIIAP-DRPGLLARIGRIFLEFDLSLQNAKIAT-LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred EEEEEEEC-CCCCHHHHHHHHHHHCCCEEEEeEEEe-cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35667665 789999999999999999999999999 799999999997544433433 34667777666
No 38
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.56 E-value=0.54 Score=49.12 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=54.4
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..|.|.|. +++++|++|..+|..+|+.|++|.+.+ .+|.++-++.+.-..+.....+.|.+.|.+++
T Consensus 600 ~~V~V~~~-DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 600 VEVTVVAP-DRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred EEEEEEec-CCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 34556654 789999999999999999999999998 89999988888754443345677888888887
No 39
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.51 E-value=0.44 Score=34.82 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCC--CCCCHHHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKST--YGLDCEVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~--~~~~~~~L~~~L~~~i 236 (252)
+|.|.|. ++.++-.++...+-+.||.+.-..+++ +|+..|.+.--+... ..+.=+-|++||.+++
T Consensus 2 vitvnCP-DktGLgcdlcr~il~fGl~i~rgd~sT--DGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 2 VITINCP-DKTGLGCDLCRIILEFGLNITRGDDST--DGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred EEEEeCC-CccCcccHHHHHHHHhceEEEeccccc--CCcEEEEEEEEecCCCCCcccHHHHHHHHHhcC
Confidence 4677776 677889999999999999999999999 777776555444332 3456678999998765
No 40
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.33 E-value=0.64 Score=48.88 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH----HHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC----EVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~----~~L~~~L~~~i 236 (252)
.|.|.+. +++++|++|..+|..+|++|++|.++++.||.++-+|.++-.++..+.. +.|.+.|.+++
T Consensus 670 ~i~V~~~-DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 670 EVFIYAP-DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred EEEEEeC-CCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4566654 7889999999999999999999999965899999999998655444433 34777777777
No 41
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.32 E-value=0.7 Score=32.81 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=42.1
Q ss_pred EEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-CCEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 171 QISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-QGRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 171 ~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-~~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
.+... .+++.|.+|+.+|.+.|..+.+.+... . ++.....+.+++.+. -....+.++|+
T Consensus 3 ~v~~~-d~~g~L~~i~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~vev~~~--~~l~~i~~~L~ 62 (74)
T cd04887 3 RLELP-NRPGMLGRVTTAIGEAGGDIGAIDLVE-QGRDYTVRDITVDAPSE--EHAETIVAAVR 62 (74)
T ss_pred EEEeC-CCCchHHHHHHHHHHcCCcEEEEEEEE-ecCCEEEEEEEEEcCCH--HHHHHHHHHHh
Confidence 34433 578899999999999999999999887 5 466667777777653 22333444444
No 42
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.19 E-value=0.87 Score=48.46 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=54.1
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCC----HHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLD----CEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~----~~~L~~~L~~~i 236 (252)
-.+|.|.+. +++|+|.+|..+|.++|+.|.+|.+++ .|+++.-+|.+.-.++..+. .+.|.++|..++
T Consensus 843 ~t~i~I~~~-DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L 914 (931)
T PRK05092 843 FTVIEVNGR-DRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAAL 914 (931)
T ss_pred eEEEEEEEC-CcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 356777765 789999999999999999999999999 89999999998754433332 245777777777
No 43
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.04 E-value=0.51 Score=49.78 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH---HHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC---EVLNEKLKSF 235 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~---~~L~~~L~~~ 235 (252)
--+|.|.+. +++|+|.+|.++|.++|++|.+|-|+| .|+++.-+|.+.-.++..++. +.|+++|...
T Consensus 783 ~T~iev~a~-DrpGLL~~I~~~l~~~~l~i~~AkI~T-~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 783 QTEMELFAL-DRAGLLAQVSQVFSELNLNLLNAKITT-IGEKAEDFFILTNQQGQALDEEERKALKSRLLSN 852 (854)
T ss_pred eEEEEEEeC-CchHHHHHHHHHHHHCCCEEEEEEEcc-cCceEEEEEEEECCCCCcCChHHHHHHHHHHHHH
Confidence 346677764 789999999999999999999999999 999999888886444444443 3355555443
No 44
>PRK04435 hypothetical protein; Provisional
Probab=93.01 E-value=0.59 Score=38.98 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=51.0
Q ss_pred eCCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 163 LSDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 163 l~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
..|..+.+.+... .+++.|++|+..|.+.|+.|.+.+.+...+|....+|.+.+.+. ....+.|.++|++
T Consensus 65 ~~~r~vtL~i~l~-Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLE-DRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-EGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEe-cCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-HHHHHHHHHHHHc
Confidence 4567777877654 56799999999999999999999876634677777888887652 1245556665554
No 45
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.82 E-value=0.76 Score=48.69 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=51.7
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH---HHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC---EVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~---~~L~~~L~~~i 236 (252)
-.+|.|.+. +++|+|++|..+|.++|+.|.+|.++| .|+++.-+|.+.-.++..+.. ..|+++|...+
T Consensus 796 ~t~leI~a~-DrpGLLa~Ia~~l~~~~l~I~~AkI~T-~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 796 RTRISLVAP-DRPGLLADVAHVLRMQHLRVHDARIAT-FGERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred eEEEEEEeC-CcCcHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 346677765 789999999999999999999999999 799999999987444333333 34555555444
No 46
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=92.73 E-value=0.071 Score=48.56 Aligned_cols=57 Identities=30% Similarity=0.426 Sum_probs=49.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQ 119 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~ 119 (252)
..+|..=|..||+|=..+|+.|..||.++|......|.++..+|.-|-+||..|++-
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 345777789999999999999999999999866667888888899999999998864
No 47
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.67 E-value=0.66 Score=48.75 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=50.5
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH---HHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC---EVLNEKLKSF 235 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~---~~L~~~L~~~ 235 (252)
-+|.|.+. +++|+|.+|.++|.++|++|.++.+++ .|+++.-++.+.-..+..++. +.|+++|...
T Consensus 780 t~~~v~~~-DrpGll~~i~~~l~~~~~~i~~a~i~t-~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~ 848 (850)
T TIGR01693 780 TIMEVRAL-DRPGLLARVGRTLEELGLSIQSAKITT-FGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAAS 848 (850)
T ss_pred EEEEEEEC-CccHHHHHHHHHHHHCCCeEEEEEEEe-cCccceeEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 45667664 789999999999999999999999999 899998888887655443443 3344554443
No 48
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.44 E-value=0.77 Score=32.63 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=41.5
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
+.+.+. .+++.+.+|+..|.+.|+.+...+.+...++.....|.+.+.+.. ...+.|.++|++
T Consensus 3 l~i~~~-d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~-~~l~~l~~~L~~ 65 (76)
T cd04888 3 LSLLLE-HRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN-GDIDELLEELRE 65 (76)
T ss_pred EEEEec-CCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH-HHHHHHHHHHhc
Confidence 444444 567899999999999999999998765123555566666665421 133445555543
No 49
>PRK03381 PII uridylyl-transferase; Provisional
Probab=92.27 E-value=0.83 Score=47.72 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=50.0
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.+|.|.+. +++|+|++|..+|.++|+.|.+|.+++ .|+++.-+|.+.=.++..++-. .+.|+..+
T Consensus 708 t~i~V~a~-DrpGLla~Ia~~L~~~~lnI~~AkI~T-~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 708 TVLEVRAA-DRPGLLARLARALERAGVDVRWARVAT-LGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred EEEEEEeC-CchhHHHHHHHHHHHCCCeEEEEEEee-cCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 45677664 789999999999999999999999999 7999999998875444444322 45555443
No 50
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.25 E-value=1.2 Score=30.64 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeee-----CCEEEEEEEEEec
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESF-----QGRVFYNLHLQVK 218 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~-----~~~v~~ti~akv~ 218 (252)
.+++.|.+|+..|.+.|+.|.+..+.. . ++.....+++.+.
T Consensus 7 d~~G~L~~i~~~i~~~~~nI~~i~~~~-~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 7 DRPGQLAKLLAVIAEAGANIIEVSHDR-AFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CCCChHHHHHHHHHHcCCCEEEEEEEe-ccCCCCCceEEEEEEEEeC
Confidence 678999999999999999999998776 3 2455556666653
No 51
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.18 E-value=1.3 Score=46.87 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=51.7
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH---HHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC---EVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~---~~L~~~L~~~i 236 (252)
..|.|.+. +++++|++|..+|..+|++|++|.+.+..+|.++-++.+.-.++..++. +.|.+.|.+++
T Consensus 702 t~V~V~a~-DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 702 TEIFIWSP-DRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEEEEEec-CCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 45666654 7889999999999999999999999884566888888877544444443 23677777777
No 52
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.87 E-value=0.7 Score=48.82 Aligned_cols=67 Identities=15% Similarity=0.022 Sum_probs=48.6
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCC-CCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTY-GLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~-~~~~~~L~~~L~~~i 236 (252)
..|.|.+. +++++|++|..+|..+|+.|++|.++| .|+++.-+|.+.-.+.. .-..+.|.++|.+++
T Consensus 787 T~i~V~a~-DrpGLLa~Ia~~L~~~~l~I~~AkI~T-~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 787 YILSVSAN-DRPGLLYAIARVLAEHRVSVHTAKINT-LGERVEDTFLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred EEEEEEeC-CcchHHHHHHHHHHHCCCeEEEEEEee-cCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 45666665 789999999999999999999999999 79999988888321111 011234555555544
No 53
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=91.56 E-value=1.1 Score=37.49 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHH
Q 025477 164 SDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSF 235 (252)
Q Consensus 164 ~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~ 235 (252)
.+..+.+.+. .+.+-|.|+++|+++-+.++.|++.+=+...+|+.-.||...... ...+.+.|.++|+++
T Consensus 69 k~ri~TL~l~-ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss-m~~~V~~ii~kl~k~ 138 (150)
T COG4492 69 KERIITLSLS-LEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS-MEKDVDKIIEKLRKV 138 (150)
T ss_pred cceEEEEEEE-EhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh-hhhhHHHHHHHHhcc
Confidence 3455566665 456779999999999999999999988887899999888888763 346777888888764
No 54
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=91.19 E-value=1.7 Score=45.89 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=51.4
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHH---HHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCE---VLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~---~L~~~L~~~i 236 (252)
.|.|.+. +++++|++|..+|..+||.|++|.+.+..+|.++-+|.+.=.++..+..+ .|.+.|.+++
T Consensus 679 ~V~V~~~-DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL 748 (854)
T PRK01759 679 EIFIYCQ-DQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKAL 748 (854)
T ss_pred EEEEEec-CCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555554 78899999999999999999999987757899998888875444444433 4666777766
No 55
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=91.07 E-value=1.3 Score=31.89 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=42.4
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCC-EEEEEEEEEecCC-CCCCHHHHHHHHHHH
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQG-RVFYNLHLQVKST-YGLDCEVLNEKLKSF 235 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~-~v~~ti~akv~~~-~~~~~~~L~~~L~~~ 235 (252)
.++|.|.+++..+.++|+.+++..+.. ..+ ..-|.+.+.+.+. .....+.+.+.|.+.
T Consensus 8 d~pG~L~~vL~~f~~~~vni~~I~Srp-~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 8 NKPGALAKALKVFAERGINLTKIESRP-SRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred CcCCHHHHHHHHHHHCCCCEEEEEeee-cCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998887 554 5668888887753 223334455555443
No 56
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.95 Score=47.47 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=45.8
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC 225 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~ 225 (252)
++++.+. +++|+|..+-.+|.+++|++.+|.++| +|.++.-+|.+....+..++.
T Consensus 793 ~lEv~al-DRpGLLa~v~~v~~dl~l~i~~AkItT-~GErveD~F~vt~~~~~~l~~ 847 (867)
T COG2844 793 VLEVRAL-DRPGLLAALAGVFADLGLSLHSAKITT-FGERVEDVFIVTDADGQALNA 847 (867)
T ss_pred EEEEEeC-CcccHHHHHHHHHHhcccceeeeeecc-ccccceeEEEEeccccccCCH
Confidence 4566655 789999999999999999999999999 999998888887666555543
No 57
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.17 E-value=4.9 Score=29.27 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++|.|.+++..+.++|+.+++..+.. .. +...|++++.++.. .+.+.+.+.|..+-
T Consensus 10 d~~G~L~~il~~f~~~~ini~~i~s~p-~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~ 67 (80)
T cd04905 10 NKPGALYDVLGVFAERGINLTKIESRP-SKGGLWEYVFFIDFEGH--IEDPNVAEALEELK 67 (80)
T ss_pred CCCCHHHHHHHHHHHCCcCEEEEEEEE-cCCCCceEEEEEEEECC--CCCHHHHHHHHHHH
Confidence 568999999999999999999998877 44 45668888888753 34455555554443
No 58
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=89.95 E-value=2.1 Score=26.48 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=25.9
Q ss_pred EEeCCCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 172 ISSYKVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 172 Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
+.+. .+++.+.+++..|.+.|+.+.......
T Consensus 3 i~~~-~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 3 VSGP-DRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred EEec-CCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 3443 456889999999999999999998876
No 59
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.78 E-value=2.8 Score=28.77 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=37.6
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
+.+.+. .+++.|.+++..|.++++.+.+.+... .+ +....+ ..+.+. .....+.++|.
T Consensus 3 l~i~~~-d~~g~l~~i~~~l~~~~~~i~~~~~~~-~~~~~~~~~--i~~~~~--~~~~~~~~~L~ 61 (72)
T cd04874 3 LSIIAE-DKPGVLRDLTGVIAEHGGNITYTQQFI-EREGKARIY--MELEGV--GDIEELVEELR 61 (72)
T ss_pred EEEEeC-CCCChHHHHHHHHHhCCCCEEEEEEec-cCCCeEEEE--EEEecc--ccHHHHHHHHh
Confidence 444444 677899999999999999999988876 43 333333 444432 23334555544
No 60
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=89.27 E-value=1.2 Score=32.10 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=38.4
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
+.|.+. .+.++|.+|+.++.+.|..+.+.++.+ . +. ..+.+.+.+. ...+.|.++|+
T Consensus 3 l~I~~~-dr~Gll~dI~~~i~~~~~nI~~~~~~~-~-~~--i~l~i~v~~~--~~L~~li~~L~ 59 (74)
T cd04877 3 LEITCE-DRLGITQEVLDLLVEHNIDLRGIEIDP-K-GR--IYLNFPTIEF--EKLQTLMPEIR 59 (74)
T ss_pred EEEEEE-ccchHHHHHHHHHHHCCCceEEEEEec-C-Ce--EEEEeEecCH--HHHHHHHHHHh
Confidence 445554 578999999999999999999999987 4 44 3344455432 22344545544
No 61
>PRK05092 PII uridylyl-transferase; Provisional
Probab=88.58 E-value=4 Score=43.55 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=49.8
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCC-C---HHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGL-D---CEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~-~---~~~L~~~L~~~i 236 (252)
..|.|.+. +++++|.+|..+|..+|+.|++|.+.++.+|.++-++.++-..+... + .+.|.+.|..++
T Consensus 733 t~v~I~~~-Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 733 TEVTVLAA-DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred EEEEEEeC-CCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555554 68899999999999999999999998856788777787764433222 2 334666676666
No 62
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=88.32 E-value=2.9 Score=27.38 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=31.9
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEEec
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQVK 218 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~akv~ 218 (252)
.+++.+.++++.|.++++.+.+..... .+ +...+.+...+.
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 48 (71)
T cd04876 7 DRPGLLADITTVIAEEKINILSVNTRT-DDDGLATIRLTLEVR 48 (71)
T ss_pred ccCcHHHHHHHHHHhCCCCEEEEEeEE-CCCCEEEEEEEEEEC
Confidence 567889999999999999999998877 55 444455655554
No 63
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=87.88 E-value=4.2 Score=37.57 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++|++.|. +++|+..+|-+.|-++|+.+.+.+..+..++. .|++.+.+......+.+.|+++|..+.
T Consensus 7 ~~vitv~G~-DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~-~F~m~~~~~~p~~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 7 TFVLTLSCP-SAAGIVAAVTGFLAEHGCYITELHSFDDRLSG-RFFMRVEFHSEEGLDEDALRAGFAPIA 74 (286)
T ss_pred eEEEEEEeC-CCCCHHHHHHHHHHhCCCCEEEeeeeecCCCC-eEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 355777765 78999999999999999999999997522333 344566665434577899999999987
No 64
>PRK03059 PII uridylyl-transferase; Provisional
Probab=86.92 E-value=5 Score=42.52 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCC----HHHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLD----CEVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~----~~~L~~~L~~~i 236 (252)
.|.|.+. +++++|+++..+|..+||.|++|.+.++.+|.++-++.+.-.++. .. .+.|.+.|.+++
T Consensus 680 ~v~i~~~-d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 680 QVMVYTP-DQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred EEEEEec-CCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHH
Confidence 3445554 789999999999999999999999976478889988888743332 22 334666666666
No 65
>PRK04374 PII uridylyl-transferase; Provisional
Probab=86.45 E-value=4.4 Score=43.05 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=50.0
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCC-CCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTY-GLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~-~~~~~~L~~~L~~~i 236 (252)
|.|.+. +++++|++|..+|..+|+.|++|.+.++.+|.++-++.+.-.++. .-....|.+.|.+++
T Consensus 693 v~v~~~-d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 693 VFVYSP-DRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred EEEEeC-CCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 444554 688999999999999999999999998678889989888643332 112344777777777
No 66
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=85.83 E-value=7 Score=41.67 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=49.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCC--C---HHHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGL--D---CEVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~--~---~~~L~~~L~~~i 236 (252)
.|.|.+. +++++|+++..+|..+|+.|++|.+.++.+|.++-++.+.-.++..+ . .+.|.+.|.+++
T Consensus 706 ~V~V~~~-DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 706 QIFIYAP-DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred EEEEEeC-CCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 3445554 78999999999999999999999986646788888888875444332 2 233667777766
No 67
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=85.76 E-value=5.8 Score=26.78 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeC--CEEEEEEEEEecCCCCCCHHHHHHHHHHH
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQ--GRVFYNLHLQVKSTYGLDCEVLNEKLKSF 235 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~--~~v~~ti~akv~~~~~~~~~~L~~~L~~~ 235 (252)
.+++.+.+++..|.+.|+.+.+..+.. .+ +....++.+ .+. ..+.+.++|+++
T Consensus 8 d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~~~~~~~~~v--~~~---~~~~l~~~l~~~ 62 (71)
T cd04879 8 DVPGVIGKVGTILGEHGINIAAMQVGR-KEKGGIAYMVLDV--DSP---VPEEVLEELKAL 62 (71)
T ss_pred CCCCHHHHHHHHHHhcCCCeeeEEEec-cCCCCEEEEEEEc--CCC---CCHHHHHHHHcC
Confidence 567899999999999999999999887 44 455555555 331 355666666643
No 68
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.31 E-value=4.8 Score=27.33 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeC--CEEEEEEEE
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQ--GRVFYNLHL 215 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~--~~v~~ti~a 215 (252)
..+++.|.+++..|.++|+.|.+..... .. +...+.+++
T Consensus 7 ~d~pG~L~~i~~~l~~~~~nI~~i~~~~-~~~~~~~~v~~~v 47 (65)
T cd04882 7 PDKPGGLHEILQILSEEGINIEYMYAFV-EKKGGKALLIFRT 47 (65)
T ss_pred CCCCcHHHHHHHHHHHCCCChhheEEEc-cCCCCeEEEEEEe
Confidence 3678999999999999999998887655 33 444444443
No 69
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=84.54 E-value=6.2 Score=36.59 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=51.0
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEe--eeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFF--ESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S--~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.+|++.|. +++|+..+|-..|-++|+.+++++-. + ..+.+|-.+.........++.+.|+++|..+-
T Consensus 10 ~iitv~G~-Dr~GIVA~Vs~~Lae~g~NI~disq~~d~-~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 10 YVLTLACP-SAPGIVAAVSGFLAEKGCYIVELTQFDDD-ESGRFFMRVSFHAQSAEAASVDTFRQEFQPVA 78 (289)
T ss_pred EEEEEECC-CCCCcHHHHHHHHHHCCCCEEeccccccc-ccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 46777765 78999999999999999999999985 3 45566655444433333578889999998876
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.08 E-value=7.4 Score=26.39 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
..+++.+.+++..|.++|+.+.+...... .++..... ..+.+. ....+.++|++
T Consensus 7 ~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP---IDEEVIEEIKK 61 (71)
T ss_pred CCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC---CCHHHHHHHHc
Confidence 36778999999999999999998876651 12444333 444442 45566666654
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=83.99 E-value=6.6 Score=37.66 Aligned_cols=67 Identities=9% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-----CCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 164 SDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-----QGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 164 ~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-----~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
.+-.+.|.|... +++++|.+|+..|.+.++.|.++++.+ . ++.....+.++|.+. -....|.++|++
T Consensus 323 ~~y~v~l~I~~~-dr~GlL~dI~~~is~~~~nI~~v~~~~-~~~~~~~~~~~i~l~i~V~d~--~~L~~vi~~Lr~ 394 (403)
T PRK07334 323 AGRLARLRVDIR-DRPGALARVTALIGEAGANIIEVSHQR-LFTDLPAKGAELELVIETRDA--AHLQEVIAALRA 394 (403)
T ss_pred CCCEEEEEEEeC-CCCCHHHHHHHHHhhCCCceEEEEEEe-cccCCCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 344577777765 678999999999999999999999876 4 456667777777652 233345555543
No 72
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=83.91 E-value=8.4 Score=26.11 Aligned_cols=46 Identities=9% Similarity=-0.006 Sum_probs=33.9
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee--CCEEEEEEEEEe
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF--QGRVFYNLHLQV 217 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~--~~~v~~ti~akv 217 (252)
+.+... .+++.|.+++..|.++|+.+.+.+... . ++...+.+.+.+
T Consensus 3 l~i~~~-d~~g~l~~i~~~l~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 50 (72)
T cd04878 3 LSVLVE-NEPGVLNRISGLFARRGFNIESLTVGP-TEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEc-CCCcHHHHHHHHHHhCCCCEEEEEeee-cCCCCeEEEEEEEEC
Confidence 344433 567899999999999999999998876 4 345555666654
No 73
>PRK08577 hypothetical protein; Provisional
Probab=83.61 E-value=10 Score=30.82 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=44.6
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CE-EEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ-GR-VFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~-v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
.+.+.+.+. .+++.|.+++..|.++++.+.+.+... .. +. ....+.+.+.+. ....+.+.++|++
T Consensus 56 ~~~I~V~~~-Dr~GvLa~I~~~l~~~~inI~~i~~~~-~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVE-DRPGVLAKITGLLAEHGVDILATECEE-LKRGELAECVIIVDLSKS-DIDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEc-CCCCHHHHHHHHHHHCCCCEEEEEEEE-ecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHc
Confidence 455666654 678999999999999999999988776 43 33 344566666553 1345566666654
No 74
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.73 E-value=6.2 Score=27.33 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=39.2
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-C-CEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-Q-GRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-~-~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
+.+.+. .+++.+.+++..|.+.|+.+.+.+... . + +.....+...+.+ .-....+.++|++
T Consensus 3 l~i~~~-d~~g~l~~i~~~l~~~~i~I~~~~~~~-~~~~~~~~~~i~~~~~~--~~~l~~~i~~L~~ 65 (79)
T cd04881 3 LRLTVK-DKPGVLAKITGILAEHGISIESVIQKE-ADGGETAPVVIVTHETS--EAALNAALAEIEA 65 (79)
T ss_pred EEEEeC-CCCcHHHHHHHHHHHcCCCeEEEEEcc-cCCCCceeEEEEEccCC--HHHHHHHHHHHHc
Confidence 445444 567899999999999999999998766 4 3 4444555555432 1233344445443
No 75
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=82.19 E-value=9.7 Score=35.10 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=46.8
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC--CEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ--GRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~--~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
+|++.|. +++|...+|-..|-++|+.+++++.+. .. |.++-.+.+.+.+ ...+.+.|++.|..
T Consensus 2 ~itv~g~-D~~GIVA~Vt~~La~~g~NI~d~sq~~-~~~~~~F~mr~~v~~~~-~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCP-DQKGLVAAISTFIAKHGANIISNDQHT-DPETGRFFMRVEFQLEG-FRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECC-CCCChHHHHHHHHHHCCCCEEeeeEEE-cCCCCeEEEEEEEEeCC-CCCCHHHHHHHHHH
Confidence 3566664 789999999999999999999999887 54 4444333333332 24678899999988
No 76
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=81.35 E-value=1.5 Score=42.89 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhHHHHHHHHHHHHH
Q 025477 71 ASERDRRKKINSLYSSLRSLLPVA----DQTKKLSIPATVSRVLKYIPEL 116 (252)
Q Consensus 71 ~~ER~RR~~mn~~f~~LrsllP~~----~~~dK~Si~~~l~~Ai~YIk~L 116 (252)
-+-|.||++-|--|..|..+||-. .+.||+|| |.=|..|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasi---iRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASI---IRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhh---hhHHHHHHHHH
Confidence 356899999999999999999975 46799997 77899999743
No 77
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.97 E-value=9.4 Score=27.04 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
..++|.|.+++..|.++|+.+++.....
T Consensus 7 ~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 7 EDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 3678999999999999999999998776
No 78
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.91 E-value=20 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS 219 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~ 219 (252)
..++|.|.++|..+..+|+.+.+..+-.+-+...-|.|.+.++.
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 34689999999999999999999999983334456888888875
No 79
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=79.88 E-value=2.2 Score=29.66 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
..+++.+.+++..|.+.|+.+...+... .++.....+.+.+. ..+.+.++|++
T Consensus 7 ~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~~~-----~l~~li~~l~~ 59 (69)
T cd04901 7 KNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDIDSE-----VSEELLEALRA 59 (69)
T ss_pred cCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence 4678999999999999999998876665 45555555554443 45566666664
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=79.73 E-value=18 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=35.9
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCC-EEEEEEEEEecC
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQG-RVFYNLHLQVKS 219 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~-~v~~ti~akv~~ 219 (252)
.++|.|.++|..+...|+.+.+..+-. ..+ ..-|.+.+.+..
T Consensus 9 ~~pG~L~~vL~~f~~~~iNlt~IeSRP-~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 9 EEVGALARALKLFEEFGVNLTHIESRP-SRRNGSEYEFFVDCEV 51 (74)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEECCC-CCCCCceEEEEEEEEc
Confidence 468899999999999999999999998 554 455888888875
No 81
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=79.23 E-value=1.6 Score=45.01 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=39.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhHHHHHHHHHHH
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVA----DQTKKLSIPATVSRVLKYIP 114 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~----~~~dK~Si~~~l~~Ai~YIk 114 (252)
+|+.-..+=|.||.|=|+-|+.|.-+||.. +..||+|| |.=||.|.+
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSi---mRLtISyLR 96 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASI---MRLTISYLR 96 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHH---HHHHHHHHH
Confidence 356666778999999999999999999964 45799997 889999986
No 82
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=77.46 E-value=6.7 Score=30.46 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHHhhh
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFYNEK 239 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i~~~ 239 (252)
-++|++.+ +++.|....+-.+|-++|+.+++.+=+. .+|.+...+.+-... ...+...|++.|.... ++
T Consensus 3 ~avITV~G-kDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~-~~~d~~~lr~~l~~~~-~~ 71 (90)
T COG3830 3 RAVITVIG-KDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISK-EVVDFAALRDELAAEG-KK 71 (90)
T ss_pred eEEEEEEc-CCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCCh-HhccHHHHHHHHHHHH-Hh
Confidence 36788875 5889999999999999999999999988 888776666665543 3577888998888777 44
No 83
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=76.05 E-value=19 Score=33.15 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=49.1
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecC-CCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKS-TYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~-~~~~~~~~L~~~L~~~i 236 (252)
..+|++.|. +++|+..+|-+.|-++|+.+.+++.+.. .+|. +++.+.+.- ....+.+.|.+.|..+.
T Consensus 6 ~~vitv~G~-DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~--F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCP-DRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR--FFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred eEEEEEECC-CCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe--EEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356777664 7899999999999999999999998861 2343 444444432 22356888999998887
No 84
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.60 E-value=19 Score=26.51 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS 219 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~ 219 (252)
.+++.|.++|..++..|+.+.+..+-.+-+...-|.+.+.+.+
T Consensus 9 ~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 9 NEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 5678999999999999999999999884344566888888875
No 85
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=74.38 E-value=25 Score=30.63 Aligned_cols=67 Identities=6% Similarity=0.088 Sum_probs=54.5
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC----CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ----GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~----~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..|.+.+. +++|++.++-+.|-++|+.|.+.+.-+ .+ +.-.|.+++++.-..+...+.|++.|..+.
T Consensus 96 ~~v~v~G~-DrPGIV~~vT~~la~~~iNI~~L~T~~-~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVA-DSPHLIERFTALFDSHHMNIAELVSRT-QPAEGERPAQLHIQITAHSPASQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEEC-CCCCHHHHHHHHHHHcCCChhheEEee-ecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34556554 789999999999999999999999887 54 445777888877666678999999999888
No 86
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=73.89 E-value=7.5 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 178 HKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 178 ~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+++.|.+|+..+..-|+.+-+.+++. .++--++.+...+.+. .-..+.|...|.+++
T Consensus 2 ~~GvL~Ri~~vf~rRg~nI~sl~v~~-~~~~~~~riti~v~~~-~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 2 QPGVLNRITGVFRRRGFNIESLSVGP-TEDPGISRITIVVSGD-DREIEQLVKQLEKLI 58 (63)
T ss_dssp STTHHHHHHHHHHTTT-EECEEEEEE--SSTTEEEEEEEEES--CCHHHHHHHHHHCST
T ss_pred CcHHHHHHHHHHhcCCeEEeeEEeee-cCCCCEEEEEEEEeeC-chhHHHHHHHHhccC
Confidence 46899999999999999999999888 4544444444444442 245666777776655
No 87
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.42 E-value=19 Score=38.18 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=54.2
Q ss_pred CCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHH---HHHHHHHHH
Q 025477 164 SDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEV---LNEKLKSFY 236 (252)
Q Consensus 164 ~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~---L~~~L~~~i 236 (252)
++.||+|. + +.++.+|..+...+...|+.|++|.+-++-+|.++-|+.+.--++..++.++ +.+.|..++
T Consensus 683 ~~teV~V~--a-~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l 755 (867)
T COG2844 683 GGTEVFVY--A-PDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEAL 755 (867)
T ss_pred CceEEEEE--c-CCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHH
Confidence 67787775 3 4788999999999999999999999999888999999888754444455443 445566666
No 88
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=73.14 E-value=28 Score=24.16 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEe
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQV 217 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv 217 (252)
+.++|.|.+++..|.+.|+.|.+..... .++. ..+++..
T Consensus 9 ~d~pG~La~v~~~l~~~~inI~~i~~~~-~~~~--~~~rl~~ 47 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGINIRALSIAD-TSEF--GILRLIV 47 (66)
T ss_pred cCCCChHHHHHHHHHHCCCCEEEEEEEe-cCCC--CEEEEEE
Confidence 3678999999999999999999998877 5553 5555555
No 89
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=69.93 E-value=18 Score=24.97 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=37.3
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
..+++.+.++.+.|.++|+.+.+..+... .++...+.+++... ....+.+.|++
T Consensus 7 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~-----~~~~~~~~l~~ 61 (73)
T cd04902 7 TDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP-----VPDEVLEELRA 61 (73)
T ss_pred CCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC-----CCHHHHHHHHc
Confidence 36789999999999999999988876552 24566666655431 23455555554
No 90
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.83 E-value=34 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
..++|.|.+++..|.++|+.+.+.....
T Consensus 9 ~d~~G~L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 9 PDEPGVIAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred CCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence 3678899999999999999999887666
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=66.64 E-value=35 Score=25.43 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+.+++.|.+++..+..-|+.|-+.++.. ..+.-+..+..-+.+ .-..+.|...|.+++
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~v~~-t~~~~~sriti~v~~--~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMNMTQ-NTDAQNINIELTVAS--ERPIDLLSSQLNKLV 68 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEEeee-cCCCCEEEEEEEECC--CchHHHHHHHHhcCc
Confidence 3578999999999999999999999888 444334444444432 356677777777665
No 92
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=66.20 E-value=34 Score=22.77 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEE
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQ 216 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~ak 216 (252)
.+++.|.++.+.|.+.|+.|.+..... .+ +..+..+.+.
T Consensus 7 d~~G~l~~i~~~l~~~~inI~~~~~~~-~~~~~~~~~~~v~ 46 (56)
T cd04889 7 NKPGRLAEVTEILAEAGINIKAISIAE-TRGEFGILRLIFS 46 (56)
T ss_pred CCCChHHHHHHHHHHcCCCEeeEEEEE-ccCCcEEEEEEEC
Confidence 578999999999999999999998887 44 5566655554
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=66.00 E-value=21 Score=31.15 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
-.+|++-+ ++++|+..+|-++|-++|..+++++.+. .||.+--.+.+ ... ......|...|..+-
T Consensus 8 ~lviTviG-~DrpGIVa~vs~~l~~~g~NI~ds~~t~-lgg~Fa~i~lv--s~~-~~~~~~le~~L~~l~ 72 (190)
T PRK11589 8 YLVITALG-ADRPGIVNTITRHVSSCGCNIEDSRLAM-LGEEFTFIMLL--SGS-WNAITLIESTLPLKG 72 (190)
T ss_pred EEEEEEEc-CCCChHHHHHHHHHHHcCCCeeehhhHh-hCCceEEEEEE--eCC-hhHHHHHHHHHHhhh
Confidence 35666665 4789999999999999999999999999 89955444444 322 235566777776654
No 94
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=64.25 E-value=32 Score=29.11 Aligned_cols=57 Identities=9% Similarity=0.013 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeC--CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQ--GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~--~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..++|.|.+|...+...|+.+.+.++.. .+ +....+|++.-. .-..+.|...|.+++
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~-t~~~~~sriti~V~~d---~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGP-TEDPDLSRMTIVVVGD---DKVLEQITKQLNKLV 67 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEee-cCCCCEEEEEEEEECC---HHHHHHHHHHHhcCc
Confidence 4678999999999999999999999988 44 344466666532 234556666676665
No 95
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=63.98 E-value=8.9 Score=32.73 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 025477 70 NASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQ 118 (252)
Q Consensus 70 ~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~ 118 (252)
-..||.|-+++++.|.-|+.|+|......|+-+- .|.-+-+||..|.|
T Consensus 27 ~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~k-tlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 27 QRKERGRKRRLSDASTLLGKLEPGSPADGKRGKK-TLRIGTDSIQSLDE 74 (173)
T ss_pred hHHHHhHHhhhhhhhhhccccCCCCCCccccccc-ccccCCCchhhHHH
Confidence 3379999999999999999999987643333221 25566677766654
No 96
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=63.81 E-value=30 Score=36.38 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=45.6
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee--CCEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF--QGRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~--~~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
.+.|.|.+. .+.++|.+|..+|.+.++.|.++++.. . ++....+|.++|.+. ...+.|..+|+
T Consensus 666 ~v~I~I~~~-Dr~GlL~dIt~~is~~~~nI~~v~~~~-~~~~~~~~~~~~ieV~~~--~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTAN-DRSGLLRDITTILANEKVNVLGVASRS-DTKQQLATIDMTIEIYNL--QVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEc-CCCCHHHHHHHHHHHCCCCeEEEEeEE-cCCCCEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 356667665 678999999999999999999999876 4 355567778888763 23344444444
No 97
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=63.47 E-value=6.7 Score=39.72 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhcCCCC----CCCCCCChhHHHHHHHHHHH
Q 025477 75 DRRKKINSLYSSLRSLLPVA----DQTKKLSIPATVSRVLKYIP 114 (252)
Q Consensus 75 ~RR~~mn~~f~~LrsllP~~----~~~dK~Si~~~l~~Ai~YIk 114 (252)
+-|+++|.-+..|.+|||.. +|.||.|+ |.=++.|++
T Consensus 35 RHRdRLNaELD~lAsLLPfpqdiisKLDkLSV---LRLSVSyLr 75 (712)
T KOG3560|consen 35 RHRDRLNAELDHLASLLPFPQDIISKLDKLSV---LRLSVSYLR 75 (712)
T ss_pred hHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhh---hhhhHHHHH
Confidence 45789999999999999975 56788886 667888864
No 98
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.12 E-value=43 Score=23.52 Aligned_cols=43 Identities=14% Similarity=-0.010 Sum_probs=30.1
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS 219 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~ 219 (252)
.+++|.|.++++.|.+ |..|+..+......+.....+.+++.+
T Consensus 6 pdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~ 48 (68)
T cd04885 6 PERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD 48 (68)
T ss_pred CCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC
Confidence 3678999999999999 999998888762223333444445543
No 99
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.55 E-value=49 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEe
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQV 217 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv 217 (252)
.++++.|.++++.|.++|+.+.+...... .++...+.|++..
T Consensus 9 ~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 9 PDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 36778999999999999999998865541 1345556666654
No 100
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=61.72 E-value=43 Score=28.50 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=44.0
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC--CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ--GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~--~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+.+. ...++|.|.+|...+...|+.+.+.++.. .+ +..-.+|++...+ -..+.+...|.+++
T Consensus 5 IsV~-veN~pGvL~rI~~lf~rrg~NI~Sl~v~~-te~~~~sriti~V~~~~---~~i~qi~kQl~KLi 68 (161)
T PRK11895 5 LSVL-VENEPGVLSRVAGLFSRRGYNIESLTVGP-TEDPGLSRMTIVTSGDE---QVIEQITKQLNKLI 68 (161)
T ss_pred EEEE-EcCCCcHHHHHHHHHHhCCCcEEEEEeee-cCCCCEEEEEEEEECCH---HHHHHHHHHHhccc
Confidence 4443 24678999999999999999999999887 44 4445666665322 34556776777666
No 101
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=60.89 E-value=32 Score=35.88 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=40.4
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEEecC
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQVKS 219 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~akv~~ 219 (252)
.+.|.|.+. ++.++|.+|..++-+.++.|.++++.+ .+ +.+...|.++|.+
T Consensus 626 ~v~i~I~~~-dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 626 IAEIKVEMF-NHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEEe-CCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECC
Confidence 345666654 678999999999999999999999877 54 4555678888876
No 102
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=60.07 E-value=62 Score=33.80 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++.+.|+++..+|--+|+.|.+|++.. +|.....+.+....+...++..+.|.+++.+
T Consensus 555 ~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 613 (693)
T PRK00227 555 GDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDPQEFLQAYKSGV 613 (693)
T ss_pred CCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCChHHHHHHHHHhh
Confidence 4678999999999999999999999997 6666666666665566788899999999888
No 103
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=59.26 E-value=51 Score=28.44 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=44.0
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+.+.. ..++|.|.+|...+-..|+.+.+.++.. ..+.-...+.+-+.+.... .+.|.+.|.+++
T Consensus 5 isvlv-~n~PGVL~RIt~lFsrRg~NIesLsv~~-t~~~~~sr~TIvv~~~~~~-ieqL~kQL~KLi 68 (174)
T CHL00100 5 LSVLV-EDESGVLTRIAGLFARRGFNIESLAVGP-AEQKGISRITMVVPGDDRT-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEE-eCcCCHHHHHHHHHHhCCCCeeEEEeeE-cCCCCccEEEEEEECCHHH-HHHHHHHHHHHh
Confidence 44443 4688999999999999999999998876 3333232333334332222 678888888888
No 104
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=59.13 E-value=67 Score=36.57 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=50.2
Q ss_pred ceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC---C--EEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 166 MEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ---G--RVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 166 ~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~---~--~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..+.+.|-.. .++..|+++|-+|+++||.|+...--. +. + ..+|.+.++.......+.+.+.+++..++
T Consensus 488 ~~~~lkiy~~-~~~~~Ls~vlPilenlGl~V~~e~~~~-i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 488 GRLRLKIYHP-GEPLPLSDVLPILENLGLRVIDERPYE-IRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAF 561 (1528)
T ss_pred CeEEEEEEcC-CCCcCHHHHHHHHHhCCCEEEEEecce-eecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHH
Confidence 3455666533 456789999999999999999986555 33 2 35588888877765577777777776666
No 105
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=58.35 E-value=38 Score=35.17 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=41.1
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-CCEEEEEEEEEecC
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-QGRVFYNLHLQVKS 219 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-~~~v~~ti~akv~~ 219 (252)
.+.|.|.+. ++.++|.+|+.+|-+.+..|.++++.. . ++.....|.++|.+
T Consensus 610 ~v~I~I~~~-dr~GlLadI~~~ia~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 610 IVDINIEAV-DRKGVLSDLTTAISENDSNIVSISTKT-YGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEEEEe-cCCCHHHHHHHHHHHCCCCeEEEEeEE-cCCCEEEEEEEEEECC
Confidence 445666654 678999999999999999999999987 5 46666778888876
No 106
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=58.27 E-value=46 Score=21.17 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 178 HKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 178 ~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
..+.+.++++.|.+.++.+...+.+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 45789999999999999998886665
No 107
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.18 E-value=54 Score=26.21 Aligned_cols=42 Identities=12% Similarity=-0.075 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCC-EEEEEEEEEecC
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQG-RVFYNLHLQVKS 219 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~-~v~~ti~akv~~ 219 (252)
.++|.|.++|..+..+|+.+.+..+-. ..+ ..-|.+.+.+..
T Consensus 50 ~~pGsL~~iL~~Fa~~gINLt~IESRP-~~~~~~eY~FfIdieg 92 (115)
T cd04930 50 EGFSSLSRILKVFETFEAKIHHLESRP-SRKEGGDLEVLVRCEV 92 (115)
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEECCc-CCCCCceEEEEEEEEe
Confidence 467899999999999999999999988 544 445888888865
No 108
>PRK08198 threonine dehydratase; Provisional
Probab=51.32 E-value=93 Score=29.64 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=42.8
Q ss_pred CceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee----eCCEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 165 DMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES----FQGRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 165 ~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~----~~~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
+..+.+.+. ..++++.|.+++..|-+.|..|++.+.... -.+.+..++.+++.+. -..+.|.++|+
T Consensus 325 gr~~~l~v~-l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~l~~~L~ 394 (404)
T PRK08198 325 GRYLKLRVR-LPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP--EHIEEILDALR 394 (404)
T ss_pred CCEEEEEEE-eCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH--HHHHHHHHHHH
Confidence 444555555 347889999999999999999998887641 1245566666666432 12334444443
No 109
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.89 E-value=34 Score=25.30 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 105 TVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 105 ~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
-|..||+-|..||.++++|+.+...+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 377999999999999999999866554
No 110
>PRK11191 RNase E inhibitor protein; Provisional
Probab=48.98 E-value=74 Score=26.51 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHhCCcEEEEEEEe-eeeCCEEEEEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhccCCCCCCCC
Q 025477 179 KCPLSKILFNLEEDGLVLVNASFF-ESFQGRVFYNLHLQVKST-YGLDCEVLNEKLKSFYNEKREDLFPSNFGCK 251 (252)
Q Consensus 179 ~~~Ls~il~~Lee~gLdVvsas~S-~~~~~~v~~ti~akv~~~-~~~~~~~L~~~L~~~i~~~~~~~~~~~~~~~ 251 (252)
...+.+++..+.++|..|..+.-. . -++..+|++.+-.... ..-.+......|..+. +++.--| -|+||-
T Consensus 43 ~~~lek~a~~a~klGyeV~~~ee~e~-edg~~~~~~~~~~e~~l~~e~I~~~~~~L~~LA-~k~~g~Y-DGWGT~ 114 (138)
T PRK11191 43 FDKLEKAAVEAFKLGYEVTDAEELEL-EDGDVIFCCDAVSEVALNAELIDAQVEQLLALA-EKFDVEY-DGWGTY 114 (138)
T ss_pred HHHHHHHHHHHHHcCCeeeccccccc-CCCCeEEEEEEEecCCCCHHHHHHHHHHHHHHH-HHhCCCc-cCcccc
Confidence 456899999999999999776544 3 4677788877766552 1223456777888888 7777777 788874
No 111
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=48.22 E-value=4.5 Score=41.92 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=51.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 64 VKKLYHNASERDRRKKINSLYSSLRSLLPVADQT--KKLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 64 ~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~--dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
++.+.|.-+|.+||..++-.|..|.++.-..... -|.+....+...+.||..++.....+.++...+++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~ 720 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRK 720 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhh
Confidence 5788999999999999999999999988765432 24443334778999999888777666655444443
No 112
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=48.13 E-value=23 Score=29.92 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.3
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 025477 61 PTMVKKLYHNASERDRRKKINSLYSSLRSL 90 (252)
Q Consensus 61 ~~~~~k~~H~~~ER~RR~~mn~~f~~Lrsl 90 (252)
+.-..|++.+..||+||---...|.-||.+
T Consensus 7 pt~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 7 PTWKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred ccHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999998888889999985
No 113
>smart00338 BRLZ basic region leucin zipper.
Probab=45.58 E-value=33 Score=24.15 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 108 RVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 108 ~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.--.||.+|+.+++.|+...+.|...+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999988888777543
No 114
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.86 E-value=40 Score=25.16 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 105 TVSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 105 ~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
-|..||+-|.-||-.|++|.+++..+...
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 37799999999999999999998876543
No 115
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.71 E-value=64 Score=22.76 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 025477 70 NASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERL 123 (252)
Q Consensus 70 ~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L 123 (252)
+..=|.-|-.+...+..+..++-. .| .++|.+||+++-+.++..
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllql----g~------~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQL----GK------YEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----T-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHC----CC------HHHHHHHHHHHHHHHHHH
Confidence 334478888888889999998853 33 569999999999888876
No 116
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=44.27 E-value=1.3e+02 Score=28.46 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=43.4
Q ss_pred CCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee--e--CCEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 164 SDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES--F--QGRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 164 ~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~--~--~~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
.+..+.+.+. ..++++.|.++++.+.+.|..|++...... . .+....+|.++..+ .-..+.|.++|.
T Consensus 302 ~gr~~~l~v~-l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~ 372 (380)
T TIGR01127 302 SGRKVRIETV-LPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILR 372 (380)
T ss_pred CCCEEEEEEE-eCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHH
Confidence 4565566665 347889999999999999999998876620 1 24555666666543 122334455444
No 117
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=43.59 E-value=1.2e+02 Score=21.67 Aligned_cols=36 Identities=19% Similarity=0.042 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEE
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHL 215 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~a 215 (252)
...+.+.+++++|.+.|+.|..... .+..+.+++..
T Consensus 13 ~~~g~~~~if~~L~~~~I~v~~i~~---s~~~is~~v~~ 48 (75)
T cd04912 13 GAHGFLAKVFEIFAKHGLSVDLIST---SEVSVSLTLDP 48 (75)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEc---CCcEEEEEEEc
Confidence 4567899999999999999987753 24444444443
No 118
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=43.45 E-value=90 Score=20.21 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
...+.+.+++++|.+.++.+...+.+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 345789999999999999998886654
No 119
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.36 E-value=1e+02 Score=20.81 Aligned_cols=27 Identities=7% Similarity=-0.077 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
..++.+.+++++|.+.|+.|.-.+.+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 356789999999999999997776554
No 120
>PRK11899 prephenate dehydratase; Provisional
Probab=42.96 E-value=2e+02 Score=26.52 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=47.8
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-EEEEEEEEecCCCCCCHHHHHHHHHHHHhhhhh
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGR-VFYNLHLQVKSTYGLDCEVLNEKLKSFYNEKRE 241 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-v~~ti~akv~~~~~~~~~~L~~~L~~~i~~~~~ 241 (252)
+.++|.|.++|.++...|+.+....+=. ..+. .-|.|.+.+++. .+-..+.++|..+- ..+.
T Consensus 202 ~~~pGaL~~vL~~Fa~~gINLtkIeSRP-~~~~~~~Y~F~id~eg~--~~d~~v~~aL~~l~-~~~~ 264 (279)
T PRK11899 202 RNIPAALYKALGGFATNGVNMTKLESYM-VGGSFTATQFYADIEGH--PEDRNVALALEELR-FFSE 264 (279)
T ss_pred CCCCChHHHHHHHHHHcCCCeeeEEeee-cCCCCceEEEEEEEECC--CCCHHHHHHHHHHH-HhcC
Confidence 4678999999999999999999999998 6554 559999998762 34456677776665 5443
No 121
>PRK06382 threonine dehydratase; Provisional
Probab=42.91 E-value=1.4e+02 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=37.7
Q ss_pred CceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEe----eeeCCEEEEEEEEEec
Q 025477 165 DMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFF----ESFQGRVFYNLHLQVK 218 (252)
Q Consensus 165 ~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S----~~~~~~v~~ti~akv~ 218 (252)
+..+.+.+. ..++++.|.+++..|.++|..|++.... ..-.+....+|+++..
T Consensus 328 ~~~~rl~v~-v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 328 GQLVRIECN-IPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred CCEEEEEEE-cCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 445556654 3478899999999999999999988765 3123455566666654
No 122
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.85 E-value=90 Score=20.04 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=23.1
Q ss_pred CCCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 175 YKVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 175 ~~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
....++.+.+++++|.+.|+.+...+.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 34556889999999999999998776543
No 123
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.64 E-value=41 Score=23.63 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 109 VLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 109 Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
-..||.+|+.++..|+.+...|...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888777776643
No 124
>PRK11898 prephenate dehydratase; Provisional
Probab=42.43 E-value=1.9e+02 Score=26.50 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-EEEEEEEEecCCCCCCHHHHHHHHHHHHhhhh
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGR-VFYNLHLQVKSTYGLDCEVLNEKLKSFYNEKR 240 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-v~~ti~akv~~~~~~~~~~L~~~L~~~i~~~~ 240 (252)
.++|.|.++|..+.+.|+.+.+..+-. ..++ .-|.|.+.+++. .+...+.+.|..+- +.+
T Consensus 206 ~~pGsL~~~L~~F~~~~INLt~IeSRP-~~~~~~~y~F~vd~eg~--~~~~~~~~al~~L~-~~~ 266 (283)
T PRK11898 206 NLPGALYKALSEFAWRGINLTRIESRP-TKTGLGTYFFFIDVEGH--IDDVLVAEALKELE-ALG 266 (283)
T ss_pred CCccHHHHHHHHHHHCCCCeeeEeccc-CCCCCccEEEEEEEEcc--CCCHHHHHHHHHHH-Hhc
Confidence 447899999999999999999999998 5544 458888888753 33335666655554 443
No 125
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=42.29 E-value=29 Score=21.90 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 025477 70 NASERDRRKKINSLYSSLRS 89 (252)
Q Consensus 70 ~~~ER~RR~~mn~~f~~Lrs 89 (252)
+..=|+||++++..+..||.
T Consensus 10 keqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 10 KEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34458999999999999885
No 126
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=41.12 E-value=1e+02 Score=23.00 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEE--EEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRV--FYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v--~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+.++|.|.++...+...|+.+-+.++.. ..+.- -.||.+.-.+ -..+.|...|.+++
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~-te~~~~sriti~~~~~~---~~i~qi~kQL~KLi 68 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLNLNE-RDTSGVSEMKLTAVCTE---NEATLLVSQLKKLI 68 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEEecc-cCCCCeeEEEEEEECCH---HHHHHHHHHHhCCc
Confidence 3678999999999999999999888886 44433 3455544221 23445555555544
No 127
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=39.99 E-value=97 Score=23.72 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEE--EEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVF--YNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~--~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
+.++|.|.++-..+-..|+-+-+.+++. ..+.-+ .||.+.+.+ .-..+.+...|.+++
T Consensus 10 eN~~GVL~Rit~lFsRRg~NI~SLtvg~-Te~~~iSRmtivv~~~d--~~~ieqI~kQL~Kli 69 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVDIQD--DTSLHILIKKLKQQI 69 (84)
T ss_pred ECCCCHHHHHHHHHhccCcCeeeEEecc-cCCCCceEEEEEEeCCC--HHHHHHHHHHHhCCc
Confidence 3678999999999999999888888887 444333 555554332 233455666666554
No 128
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.11 E-value=62 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 106 VSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 106 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
|..||+-|--||-.|++|++++..+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998887653
No 129
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.63 E-value=1.6e+02 Score=21.65 Aligned_cols=48 Identities=6% Similarity=0.011 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC
Q 025477 169 LIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS 219 (252)
Q Consensus 169 ~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~ 219 (252)
++.+. .++++|.|.+++.+|- +..|..........+.....+.+++.+
T Consensus 3 vl~v~-ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 3 LLAVT-IPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred EEEEe-cCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 44444 3467899999999998 666666665552223333444455543
No 130
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=37.74 E-value=1.2e+02 Score=20.19 Aligned_cols=27 Identities=4% Similarity=-0.120 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
..++.+.+++++|.+.|+.|...+.+.
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 456789999999999999997776544
No 131
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=37.63 E-value=2.9e+02 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=39.9
Q ss_pred EEEEEEeCCCCC-ChHHHHHHHHHhCCcEEEEEEEeeeeC--CEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 168 ILIQISSYKVHK-CPLSKILFNLEEDGLVLVNASFFESFQ--GRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 168 v~I~Is~~~~~~-~~Ls~il~~Lee~gLdVvsas~S~~~~--~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
..+++.|..+.+ .....+++.|++.++.+.+.++-. .+ +.+..+...........+.+.+.++|.
T Consensus 143 ~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~-~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~ 210 (225)
T PRK15385 143 YILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVP-AQEQGYKEIRAELVGHADYRKTRELIISRIG 210 (225)
T ss_pred EEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeee-cCCCCeEEEEEEEEecCCchhhHHHHHHHHh
Confidence 456666754332 346888899999999999999966 43 444444444433322345555555554
No 132
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=36.65 E-value=1.3e+02 Score=20.17 Aligned_cols=35 Identities=23% Similarity=0.092 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEE
Q 025477 178 HKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHL 215 (252)
Q Consensus 178 ~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~a 215 (252)
..+...+++++|++.|+.|.....+ .+.+-+++..
T Consensus 13 ~~~~~~~if~~l~~~~i~v~~i~t~---~~~is~~v~~ 47 (62)
T cd04890 13 EVGFLRKIFEILEKHGISVDLIPTS---ENSVTLYLDD 47 (62)
T ss_pred ccCHHHHHHHHHHHcCCeEEEEecC---CCEEEEEEeh
Confidence 4578999999999999999988542 3444444443
No 133
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=35.00 E-value=1.2e+02 Score=31.91 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=39.4
Q ss_pred ceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-EEEEEEEEecC
Q 025477 166 MEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGR-VFYNLHLQVKS 219 (252)
Q Consensus 166 ~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-v~~ti~akv~~ 219 (252)
-.+.|.|... +++++|.+|+++|-+.+..|.++++.. .++. ....|.+.|.+
T Consensus 626 f~~~i~v~~~-~r~glL~~i~~~i~~~~~ni~~v~~~~-~~~~~~~~~~~i~v~n 678 (701)
T COG0317 626 YPVDIEIRAY-DRSGLLRDVSQVLANEKINVLGVNTRS-DKDQFATMQFTIEVKN 678 (701)
T ss_pred eEEEEEEEEc-cccchHHHHHHHHHhCCCceEEeeccc-cCCceEEEEEEEEECc
Confidence 3455666654 678999999999999999999999998 5443 33566666655
No 134
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=34.97 E-value=2e+02 Score=27.79 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=48.3
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-EEEEEEEEecCCCCCCHHHHHHHHHHHHhhhhh
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGR-VFYNLHLQVKSTYGLDCEVLNEKLKSFYNEKRE 241 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-v~~ti~akv~~~~~~~~~~L~~~L~~~i~~~~~ 241 (252)
+.++|.|.++|..+...|+......+=. ..+. .-|.|.+.+.+ ......+.++|..+- +++.
T Consensus 305 ~~~pGaL~~~L~~Fa~~giNLtkIeSRP-~~~~~~~Y~Ffid~eg--~~~d~~~~~aL~~l~-~~~~ 367 (386)
T PRK10622 305 GQQAGALVEALLVLRNHNLIMTKLESRP-IHGNPWEEMFYLDVQA--NLRSAEMQKALKELG-EITR 367 (386)
T ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEeee-cCCCCceEEEEEEEeC--CCCCHHHHHHHHHHH-HhcC
Confidence 4678999999999999999999999998 5655 55999999876 244456777777665 5544
No 135
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=34.60 E-value=1.4e+02 Score=20.01 Aligned_cols=33 Identities=15% Similarity=-0.000 Sum_probs=24.1
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEe
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFF 202 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S 202 (252)
|.+......++.+.++++.|.+.|+.|.....+
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 444333456788999999999999999655443
No 136
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=34.15 E-value=1.8e+02 Score=22.27 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=41.0
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++..|.+||.+.+--|+.|...+.+. .-+.=-..|..-|.+ .-..+-|...|.+++
T Consensus 12 ~~pe~leRVLrvtrhRGF~vcamnmt~-~~da~~~nie~tV~s--~R~~~lL~~QLeKl~ 68 (86)
T COG3978 12 FNPETLERVLRVTRHRGFRVCAMNMTA-AVDAGNANIELTVDS--DRSVDLLTSQLEKLY 68 (86)
T ss_pred CChHHHHHHHHHhhhcCeEEEEeeccc-ccccccceEEEEEcC--CCChHHHHHHHHHHc
Confidence 567899999999999999999999998 533333344444443 245667777777766
No 137
>PRK14639 hypothetical protein; Provisional
Probab=33.82 E-value=1.9e+02 Score=23.90 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=35.3
Q ss_pred HHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCC-CHHHHHHHHHHHH
Q 025477 185 ILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGL-DCEVLNEKLKSFY 236 (252)
Q Consensus 185 il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~-~~~~L~~~L~~~i 236 (252)
+-.+++++|++++++.+.. -++..+..|..--.++..+ +|+.+.+.|..++
T Consensus 3 ~ep~~~~~G~eLvdve~~~-~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~L 54 (140)
T PRK14639 3 LEALCKECGVSFYDDELVS-ENGRKIYRVYITKEGGVNLDDCERLSELLSPIF 54 (140)
T ss_pred hhHhHHhCCCEEEEEEEEe-cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3457889999999999998 6776666666542222222 3566888888887
No 138
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=33.28 E-value=2.6e+02 Score=26.13 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-CCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-QGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++.++|. +++|+...|-..|-++|.-+++++-.+-. +|++|--+.....+. ..+.+.|.+.+..+-
T Consensus 8 ~~LtvsCp-d~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~-~~~~~~l~~~f~~~a 75 (287)
T COG0788 8 FILTVSCP-DQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG-PLDREALRAAFAPLA 75 (287)
T ss_pred eEEEEecC-CCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC-cccHHHHHHHHHHHH
Confidence 45677775 78899999999999999999998776512 345555555554432 377888888888855
No 139
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=32.54 E-value=1.8e+02 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
...+.+.+++++|.+.++.+...+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 455789999999999999997776654
No 140
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=32.46 E-value=1.2e+02 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 106 VSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 106 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
=+.+-++|..|.++++.+.++.+.++.+
T Consensus 18 Q~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 18 QNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567789999999999999998888754
No 141
>PF14992 TMCO5: TMCO5 family
Probab=31.76 E-value=72 Score=29.72 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 98 KKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 98 dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
|-+.+..+-.+++.||++||+.++.+++.++.+.
T Consensus 138 d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~l 171 (280)
T PF14992_consen 138 DYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLL 171 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666678999999999999999999888664
No 142
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=31.29 E-value=1.2e+02 Score=28.91 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 106 VSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 106 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
|+++=+-|.+|+++++.|++..+++++
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 789999999999999999999888765
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.13 E-value=1.9e+02 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 98 KKLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 98 dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
.+.+...+|.++-+-.+.|+..+++|.++..++..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788889999999999999999999998766653
No 144
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.35 E-value=1e+02 Score=23.45 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 106 VSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 106 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
|..|-+-|-++|.++++|+.++.+++.
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999887764
No 145
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.89 E-value=2.2e+02 Score=20.64 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=36.2
Q ss_pred EEEEE--eCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCH-HHHHHHHHHHH
Q 025477 169 LIQIS--SYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDC-EVLNEKLKSFY 236 (252)
Q Consensus 169 ~I~Is--~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~-~~L~~~L~~~i 236 (252)
.|.|. .....++.+.+|+++|.+.|+.|-..+.+ .+.+.+++.- .+ ... +.|.++|.+.+
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s---~~~iSftv~~--~d---~~~~~~~~~~l~~~l 65 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTS---EISVALTLDN--TG---STSDQLLTQALLKEL 65 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeec---CCEEEEEEec--cc---cchhHHHHHHHHHHH
Confidence 45553 22345788999999999999999888542 3444444443 22 111 34555666555
No 146
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=29.73 E-value=2.2e+02 Score=28.22 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=35.7
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS 219 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~ 219 (252)
+.+.|.|.++|..+.++|+.+.+..+-.+-+...-|.+.+.+.+
T Consensus 24 ~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 24 KEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred CCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 34678999999999999999999999883334445888888875
No 147
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.40 E-value=1.3e+02 Score=21.63 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 105 TVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 105 ~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
.|.+|=...++|+..|+.|+.+.+++.
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999888764
No 148
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.21 E-value=7.7e+02 Score=26.77 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=44.5
Q ss_pred eeeCCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecC-CCCCCHHHHHHHHHHHH
Q 025477 161 SRLSDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKS-TYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 161 ~~l~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~-~~~~~~~~L~~~L~~~i 236 (252)
..++|..+++..-.. .....|..+++.|.+..-+-+=+-++. .++.+.+.+-+- +. ...+.+..|...|..++
T Consensus 770 ~~i~g~~~~~~~~~~-~d~~~Lr~~a~~lk~k~~~~vivl~~~-~~~Kv~~~~~v~-~~~~~~~~a~~lvk~la~~~ 843 (879)
T COG0013 770 EEIGGVKVLAKEVDG-ADMKELREIADDLKKKLGSAVIVLASV-ADGKVSLVVAVS-KDLTDKVKAGELVKELAAIV 843 (879)
T ss_pred eeeCCEEEEEEEecC-CCHHHHHHHHHHHHhhcCCcEEEEEEe-cCCeEEEEEEec-hhhhcccCHHHHHHHHHHhc
Confidence 356666664432211 234568888888887433333334444 455666666554 33 34589999999999988
No 149
>PRK14640 hypothetical protein; Provisional
Probab=28.11 E-value=2.7e+02 Score=23.23 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCC-CHHHHHHHHHHHHhhhhhccCCC
Q 025477 185 ILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGL-DCEVLNEKLKSFYNEKREDLFPS 246 (252)
Q Consensus 185 il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~-~~~~L~~~L~~~i~~~~~~~~~~ 246 (252)
+-..++++|++++...+.. -++..+..|..--.++..+ +|+.+.++|..++ .. .+.+|.
T Consensus 12 i~p~~~~~G~el~dve~~~-~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~L-D~-~d~i~~ 71 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIR-AGKHSTLRVYIDGENGVSVENCAEVSHQVGAIM-DV-EDPITE 71 (152)
T ss_pred HHHHHHhcCCEEEEEEEEe-cCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHh-cc-cccCCC
Confidence 3345688899999999988 5665554544432222222 3566888888888 43 344543
No 150
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.88 E-value=2.1e+02 Score=19.75 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
+..+.+.+++.+|.+.|+.|.-.+.++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 345789999999999999997776555
No 151
>PRK08526 threonine dehydratase; Provisional
Probab=26.59 E-value=3.7e+02 Score=25.88 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-----EEEEEEEEecC
Q 025477 164 SDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGR-----VFYNLHLQVKS 219 (252)
Q Consensus 164 ~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-----v~~ti~akv~~ 219 (252)
.+..+.+.+. ..++++.|.+++..+-+.+..|+...... .... +..++.+++.+
T Consensus 323 ~~r~~~~~~~-~~d~pg~l~~~~~~~~~~~~~i~~~~~~r-~~~~~~~~~~~~~~~~e~~~ 381 (403)
T PRK08526 323 SYRKMKLHVT-LVDKPGALMGLTDILKEANANIVKIDYDR-FSTKLDYGDAMISITLETKG 381 (403)
T ss_pred cCCEEEEEEE-cCCCCCHHHHHHHHHccCCCcEEEEEEEe-ccCCCCCccEEEEEEEEeCC
Confidence 4556666665 34788999999999999999999998866 3333 44555555543
No 152
>PRK14646 hypothetical protein; Provisional
Probab=26.37 E-value=3.9e+02 Score=22.40 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=39.4
Q ss_pred HHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCC---HHHHHHHHHHHHhhhhhccCCC
Q 025477 184 KILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLD---CEVLNEKLKSFYNEKREDLFPS 246 (252)
Q Consensus 184 ~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~---~~~L~~~L~~~i~~~~~~~~~~ 246 (252)
-+-.+++++|++++.+.+.. -++..+..|...-.++.+++ |+.+.+.|..++ .. .+.+|.
T Consensus 12 li~p~~~~~G~eLvdve~~~-~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~L-D~-~D~i~~ 74 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQT-NQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEI-EN-SNLLNC 74 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEe-CCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHh-Cc-CCCCCC
Confidence 34456788999999999998 67766666666433222344 556888888877 43 355543
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.17 E-value=96 Score=29.42 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 97 TKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 97 ~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.|+..|.| |+.-|.--++|++++..++.+++-+...+
T Consensus 183 g~~~rivD-IDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 183 GDENRIVD-IDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred CCCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777 99999999999999999999887766544
No 154
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=25.88 E-value=2.7e+02 Score=20.83 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHHhCCc--EEEEEEEeeeeCCE-----EEEEE-E----------EEecC-CCCCCHHHHHHHHHHHHhhhhhccC
Q 025477 184 KILFNLEEDGL--VLVNASFFESFQGR-----VFYNL-H----------LQVKS-TYGLDCEVLNEKLKSFYNEKREDLF 244 (252)
Q Consensus 184 ~il~~Lee~gL--dVvsas~S~~~~~~-----v~~ti-~----------akv~~-~~~~~~~~L~~~L~~~i~~~~~~~~ 244 (252)
+|=+.|+++|+ +|.++.++. ..+. ++.|. . ..+-+ ..-++.+.+.++|..++ ++ .|
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss-~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~-~~---~~ 80 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGE-YKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVI-KE---HF 80 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhh-cccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHH-HH---hC
Confidence 46678899999 888888866 4443 22222 1 11111 12456789999999999 33 66
Q ss_pred CC
Q 025477 245 PS 246 (252)
Q Consensus 245 ~~ 246 (252)
|.
T Consensus 81 ~~ 82 (85)
T PRK10222 81 PQ 82 (85)
T ss_pred hh
Confidence 64
No 155
>PRK14630 hypothetical protein; Provisional
Probab=25.00 E-value=3.5e+02 Score=22.41 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=33.0
Q ss_pred HHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCC-CHHHHHHHHHHHH
Q 025477 185 ILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGL-DCEVLNEKLKSFY 236 (252)
Q Consensus 185 il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~-~~~~L~~~L~~~i 236 (252)
+-..++++|++++.+.+.. -++..+..|.+--.++..+ +|+.+.+.|..++
T Consensus 14 i~~~~~~~G~eLvdve~~~-~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~l 65 (143)
T PRK14630 14 IKNVTDRLGIEIIEINTFR-NRNEGKIQIVLYKKDSFGVDTLCDLHKMILLIL 65 (143)
T ss_pred HHHHHHHcCCEEEEEEEEe-cCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3445789999999999887 5555554554432222222 3556888887776
No 156
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.88 E-value=2.9e+02 Score=20.40 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=29.8
Q ss_pred EEEEEeC--CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEE
Q 025477 169 LIQISSY--KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHL 215 (252)
Q Consensus 169 ~I~Is~~--~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~a 215 (252)
+|.|.+. ...++.+.+|++.|++.|+.|-..+.+ .+.+-+++..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs---~~sISftV~~ 48 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATS---EVSISLTLDP 48 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEec---CCEEEEEEEh
Confidence 4455432 245688999999999999999888542 3445555554
No 157
>PRK14647 hypothetical protein; Provisional
Probab=24.16 E-value=4e+02 Score=22.33 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=35.6
Q ss_pred HHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCC---HHHHHHHHHHHHhhhhhccCC
Q 025477 186 LFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLD---CEVLNEKLKSFYNEKREDLFP 245 (252)
Q Consensus 186 l~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~---~~~L~~~L~~~i~~~~~~~~~ 245 (252)
-.+++++|++++.+.+.. -++..+..|.. ....+++ |+.+.+.|..++ .- .+.+|
T Consensus 15 ~~~~~~~G~~L~dv~~~~-~~~~~~lrV~I--D~~~gvslddC~~vSr~is~~L-D~-~d~i~ 72 (159)
T PRK14647 15 EQVLSSLGLELVELEYKR-EGREMVLRLFI--DKEGGVNLDDCAEVSRELSEIL-DV-EDFIP 72 (159)
T ss_pred HHHHHHCCCEEEEEEEEe-cCCCeEEEEEE--eCCCCCCHHHHHHHHHHHHHHH-cc-cccCC
Confidence 445788999999999998 56554444444 3333344 556888888887 43 34444
No 158
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.46 E-value=2.7e+02 Score=23.33 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 70 NASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 70 ~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
...+|+-|.++.++-..++++ |..| +=.+|.| |++++.+|+++.+++....
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~i----------S~qD---eFAkwaK-l~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAI----------SAQD---EFAKWAK-LNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-----------TTT---SHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcC----------CcHH---HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777664 2222 5566776 7888888888877776543
No 159
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.35 E-value=2.9e+02 Score=19.91 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEE
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHL 215 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~a 215 (252)
...+.+.+++++|.+.|+.|-....+ .+.+.+++.-
T Consensus 13 ~~~g~~~~IF~~La~~~I~vDmI~~s---~~~isftv~~ 48 (75)
T cd04935 13 QQVGFLADVFAPFKKHGVSVDLVSTS---ETNVTVSLDP 48 (75)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEeC---CCEEEEEEeC
Confidence 35678999999999999999888542 3444455443
No 160
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.29 E-value=3.6e+02 Score=27.52 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 025477 74 RDRRKKINSLYSSLRSLLPVA 94 (252)
Q Consensus 74 R~RR~~mn~~f~~LrsllP~~ 94 (252)
+++..++++.+..|+...|..
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~ 69 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKL 69 (646)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 456777899999999888764
No 161
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=23.05 E-value=2.5e+02 Score=19.12 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEE
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNAS 200 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas 200 (252)
..++.+.+++.+|.+.|+.|+..+
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 467889999999999999997443
No 162
>PRK14637 hypothetical protein; Provisional
Probab=22.88 E-value=4.5e+02 Score=21.95 Aligned_cols=56 Identities=21% Similarity=0.072 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCC-CHHHHHHHHHHHH
Q 025477 180 CPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGL-DCEVLNEKLKSFY 236 (252)
Q Consensus 180 ~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~-~~~~L~~~L~~~i 236 (252)
+-...+-.+++++|++++++.+.. -++..+..|..--.++..+ +|+.+.+.|..++
T Consensus 9 ~~~~~v~p~~~~~g~eLvdve~~~-~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~L 65 (151)
T PRK14637 9 GYFSECEPVVEGLGCKLVDLSRRV-QQAQGRVRAVIYSAGGVGLDDCARVHRILVPRL 65 (151)
T ss_pred cHHHHHHHHHHhcCCEEEEEEEEe-cCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 445566677899999999999998 5665554555432222222 3556777777666
No 163
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=22.41 E-value=1.1e+02 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=27.3
Q ss_pred HHHHHHH-HHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHH
Q 025477 71 ASERDRR-KKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPE 115 (252)
Q Consensus 71 ~~ER~RR-~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~ 115 (252)
.+||-|- .+|..+..+.-+=+-..+++.|+.+|+ ++|+||++
T Consensus 67 ~s~~ar~aQ~mAN~VDevIA~v~k~ddK~k~~LPd---dVI~Ymrd 109 (196)
T PRK15364 67 NAERARNTQEKSNEMDEVIAKAAKGDAKTKEEVPE---DVIKYMRD 109 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCH---HHHHHHHH
Confidence 3444432 455555555555555556677888887 99999987
No 164
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=21.75 E-value=6.6e+02 Score=23.38 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCC-EEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQG-RVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~-~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++|.|+++|..+...|+......+=. ..+ -.-|.|.+.+.+. .+-..++++|..+=
T Consensus 203 n~PGaL~~~L~~Fa~~gINlTkIESRP-~k~~~~~Y~F~iD~eg~--~~~~~v~~AL~el~ 260 (279)
T COG0077 203 NKPGALYKALGVFAKRGINLTKIESRP-LKTGLGEYLFFIDIEGH--IDDPLVKEALEELK 260 (279)
T ss_pred CCCchHHHHHHHHHHcCcceeeEeecc-cCCCCeeEEEEEEEecC--cCcHhHHHHHHHHH
Confidence 678999999999999999999999988 564 4569999998763 33356777776665
No 165
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.42 E-value=3.4e+02 Score=20.20 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 83 LYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 83 ~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
.+...|++|-...-.++ | +.+--++|+.|+++++...+-...+.
T Consensus 36 Klq~ar~~i~~lpgi~~-s----~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 36 KLQKARAAIRELPGIDR-S----VEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHhCCCccC-C----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333 3 56778889999988887666555443
No 166
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.38 E-value=1.7e+02 Score=19.88 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 025477 111 KYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 111 ~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
.|+.+|+..+..|+.....|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777776666666554
No 167
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.37 E-value=1.6e+02 Score=20.16 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=15.3
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 025477 106 VSRVLKYI----PELQQQVERLMQKKEELLS 132 (252)
Q Consensus 106 l~~Ai~YI----k~Lq~~v~~L~~~k~~l~~ 132 (252)
|.++-++| .++-+++++|++|++.|..
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4566788888888887754
No 168
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.52 E-value=1.8e+02 Score=20.84 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 110 LKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
-+-|++|++++.+|+.+..-++..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888888777654
No 169
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.35 E-value=2.7e+02 Score=18.42 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
..++.+.+++.+|.+.|+.|.-.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 356789999999999999997776544
No 170
>PRK14638 hypothetical protein; Provisional
Probab=20.29 E-value=4.6e+02 Score=21.82 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCC-CCC-CHHHHHHHHHHHH
Q 025477 186 LFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKST-YGL-DCEVLNEKLKSFY 236 (252)
Q Consensus 186 l~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~-~~~-~~~~L~~~L~~~i 236 (252)
-..++++|++++.+.+.. -++..+..+.+.-.++ ..+ +|+.+.+.|..++
T Consensus 15 ~~i~~~~G~elvdve~~~-~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~L 66 (150)
T PRK14638 15 ERIAEEQGLEIFDVQYRR-ESRGWVLRIIIDNPVGYVSVRDCELFSREIERFL 66 (150)
T ss_pred HHHHHHcCCEEEEEEEEe-cCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHh
Confidence 345788999999999998 6665555555532222 222 3566888888887
Done!