Query 025477
Match_columns 252
No_of_seqs 153 out of 944
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.6 5.6E-16 1.9E-20 116.2 9.6 68 65-132 1-68 (80)
2 1am9_A Srebp-1A, protein (ster 99.6 3.7E-16 1.3E-20 117.5 7.1 70 63-134 4-73 (82)
3 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.5E-15 5.1E-20 115.7 9.0 70 62-131 3-72 (88)
4 1hlo_A Protein (transcription 99.6 1.8E-15 6.2E-20 113.0 8.2 70 62-132 9-78 (80)
5 1nkp_B MAX protein, MYC proto- 99.6 2.6E-15 8.8E-20 112.8 8.7 68 65-133 2-69 (83)
6 3u5v_A Protein MAX, transcript 99.5 3.1E-15 1E-19 111.1 2.9 62 63-124 3-65 (76)
7 1a0a_A BHLH, protein (phosphat 99.5 2.4E-15 8.1E-20 107.9 1.7 56 65-120 2-61 (63)
8 4ati_A MITF, microphthalmia-as 99.5 8.1E-14 2.8E-18 111.5 6.7 64 63-126 25-89 (118)
9 4h10_B Circadian locomoter out 99.5 6.2E-14 2.1E-18 102.7 5.5 60 62-124 5-65 (71)
10 1an4_A Protein (upstream stimu 99.5 1.5E-14 5E-19 103.9 2.1 58 63-120 3-63 (65)
11 2ql2_B Neurod1, neurogenic dif 99.4 1.7E-13 6E-18 97.3 6.9 58 64-121 1-58 (60)
12 1mdy_A Protein (MYOD BHLH doma 99.4 7.9E-13 2.7E-17 96.1 6.3 60 61-121 8-67 (68)
13 4h10_A ARYL hydrocarbon recept 99.3 3.6E-13 1.2E-17 99.2 2.5 54 62-118 6-63 (73)
14 2lfh_A DNA-binding protein inh 98.9 3.1E-10 1.1E-14 82.1 2.3 48 71-118 20-67 (68)
15 4f3l_A Mclock, circadian locom 98.8 2.4E-09 8.4E-14 98.6 4.3 58 60-120 7-65 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 1.9E-08 6.6E-13 93.7 4.6 54 63-119 11-68 (387)
17 4aya_A DNA-binding protein inh 98.5 1.4E-07 4.9E-12 72.6 6.8 52 71-122 31-82 (97)
18 4ath_A MITF, microphthalmia-as 98.1 1.1E-05 3.7E-10 60.5 7.8 50 77-126 4-54 (83)
19 1zpv_A ACT domain protein; str 96.5 0.058 2E-06 39.0 11.9 66 167-236 5-70 (91)
20 1u8s_A Glycine cleavage system 94.3 0.26 8.9E-06 40.7 9.5 64 168-236 7-70 (192)
21 2nyi_A Unknown protein; protei 93.4 0.61 2.1E-05 38.8 10.3 50 167-218 5-54 (195)
22 1u8s_A Glycine cleavage system 93.2 0.84 2.9E-05 37.6 10.6 67 166-236 92-166 (192)
23 2ko1_A CTR148A, GTP pyrophosph 92.7 0.33 1.1E-05 34.3 6.5 49 168-218 6-54 (88)
24 2nyi_A Unknown protein; protei 91.5 0.84 2.9E-05 38.0 8.6 65 167-236 93-163 (195)
25 3p96_A Phosphoserine phosphata 85.0 3.5 0.00012 37.6 8.8 68 166-236 11-78 (415)
26 3n0v_A Formyltetrahydrofolate 84.7 6.4 0.00022 35.0 10.2 66 168-236 9-75 (286)
27 3o1l_A Formyltetrahydrofolate 84.0 9 0.00031 34.4 10.9 68 166-236 21-90 (302)
28 3obi_A Formyltetrahydrofolate 83.9 8.9 0.0003 34.1 10.7 68 167-236 6-74 (288)
29 2jhe_A Transcription regulator 82.5 3.7 0.00013 32.1 7.0 33 170-203 3-35 (190)
30 1y7p_A Hypothetical protein AF 80.9 3.9 0.00013 35.5 6.9 62 167-234 4-69 (223)
31 3he4_B Synzip5; heterodimeric 80.8 2.3 8E-05 27.1 4.1 27 105-131 4-30 (46)
32 3lou_A Formyltetrahydrofolate 79.9 12 0.00042 33.3 10.1 69 167-236 10-80 (292)
33 2oqq_A Transcription factor HY 78.2 2.3 7.8E-05 27.5 3.4 24 111-134 3-26 (42)
34 2wt7_A Proto-oncogene protein 71.3 15 0.0005 25.2 6.5 46 73-134 1-46 (63)
35 3nrb_A Formyltetrahydrofolate 67.1 28 0.00094 30.9 9.1 66 167-236 7-73 (287)
36 2f1f_A Acetolactate synthase i 64.9 8.5 0.00029 31.5 4.9 63 170-236 6-69 (164)
37 2l5g_A GPS2 protein, G protein 62.0 15 0.00052 23.0 4.5 26 105-130 9-34 (38)
38 1zme_C Proline utilization tra 60.3 10 0.00035 25.6 4.0 25 110-134 43-67 (70)
39 1dh3_A Transcription factor CR 55.6 13 0.00044 25.0 3.7 24 111-134 22-45 (55)
40 2pc6_A Probable acetolactate s 49.0 19 0.00065 29.5 4.4 63 170-236 7-70 (165)
41 2fgc_A Acetolactate synthase, 47.7 64 0.0022 27.1 7.6 58 176-236 37-95 (193)
42 1kd8_B GABH BLL, GCN4 acid bas 47.6 14 0.00047 23.0 2.5 22 113-134 3-24 (36)
43 2wq1_A General control protein 47.3 14 0.00049 22.5 2.5 22 113-134 2-23 (33)
44 3luy_A Probable chorismate mut 46.9 1.6E+02 0.0056 26.5 11.3 61 177-241 217-278 (329)
45 2jee_A YIIU; FTSZ, septum, coi 46.8 28 0.00095 25.5 4.5 27 106-132 15-41 (81)
46 3byp_A CZRB protein; membrane 45.4 77 0.0026 22.3 7.6 55 181-236 11-70 (94)
47 1jnm_A Proto-oncogene C-JUN; B 44.8 23 0.00079 24.0 3.7 27 108-134 19-45 (62)
48 2dgc_A Protein (GCN4); basic d 44.1 24 0.00083 24.3 3.7 27 108-134 27-53 (63)
49 1gd2_E Transcription factor PA 43.1 22 0.00076 25.2 3.4 21 110-130 28-48 (70)
50 3c3g_A Alpha/beta peptide with 42.4 19 0.00065 21.9 2.5 22 113-134 2-23 (33)
51 1gmj_A ATPase inhibitor; coile 41.5 76 0.0026 23.3 6.2 45 77-132 35-79 (84)
52 1t2k_D Cyclic-AMP-dependent tr 40.7 29 0.001 23.4 3.7 27 108-134 19-45 (61)
53 2er8_A Regulatory protein Leu3 39.4 14 0.00048 25.2 1.9 21 110-130 48-68 (72)
54 2oxj_A Hybrid alpha/beta pepti 38.7 23 0.0008 21.7 2.5 22 113-134 3-24 (34)
55 3mwb_A Prephenate dehydratase; 38.4 1.3E+02 0.0045 26.9 8.6 61 177-241 211-272 (313)
56 1kd8_A GABH AIV, GCN4 acid bas 36.7 18 0.0006 22.5 1.7 22 113-134 3-24 (36)
57 2dtj_A Aspartokinase; protein- 36.5 1.2E+02 0.0042 24.2 7.5 41 163-203 11-51 (178)
58 3m48_A General control protein 35.6 24 0.00081 21.6 2.1 21 114-134 3-23 (33)
59 2zzt_A Putative uncharacterize 35.2 1.1E+02 0.0038 22.3 6.6 55 181-236 11-68 (107)
60 2hy6_A General control protein 34.0 21 0.00071 21.9 1.7 22 113-134 3-24 (34)
61 3k29_A Putative uncharacterize 33.8 99 0.0034 25.5 6.4 61 66-132 38-99 (169)
62 3c3f_A Alpha/beta peptide with 33.4 32 0.0011 21.1 2.5 22 113-134 3-24 (34)
63 2f06_A Conserved hypothetical 32.9 1.6E+02 0.0054 22.2 8.0 39 176-215 80-118 (144)
64 1ssz_A Pulmonary surfactant-as 32.2 11 0.00038 22.6 0.3 21 225-246 4-24 (34)
65 2bni_A General control protein 30.0 26 0.0009 21.5 1.7 22 113-134 3-24 (34)
66 1xkm_B Distinctin chain B; por 29.6 57 0.0019 18.4 2.9 17 106-122 6-22 (26)
67 2dt9_A Aspartokinase; protein- 29.1 1.9E+02 0.0066 22.5 7.5 41 163-203 12-52 (167)
68 1uo4_A General control protein 29.0 38 0.0013 20.7 2.3 22 113-134 3-24 (34)
69 2re1_A Aspartokinase, alpha an 28.8 1.1E+02 0.0036 24.2 5.8 39 165-203 23-61 (167)
70 1p3q_Q VPS9P, vacuolar protein 27.8 47 0.0016 22.4 2.9 25 71-95 3-27 (54)
71 1pyi_A Protein (pyrimidine pat 27.1 44 0.0015 23.8 2.9 22 110-131 47-68 (96)
72 2qmw_A PDT, prephenate dehydra 26.7 1.2E+02 0.0041 26.5 6.2 60 176-240 197-257 (267)
73 1nkp_A C-MYC, MYC proto-oncoge 26.3 90 0.0031 22.6 4.5 48 87-134 31-82 (88)
74 2r2v_A GCN4 leucine zipper; co 26.2 50 0.0017 20.2 2.5 21 113-133 3-23 (34)
75 3twe_A Alpha4H; unknown functi 25.5 99 0.0034 17.5 3.8 19 108-126 5-23 (27)
76 3s1t_A Aspartokinase; ACT doma 25.4 2E+02 0.0067 23.2 6.9 54 163-216 12-67 (181)
77 3h90_A Ferrous-iron efflux pum 25.3 2.5E+02 0.0085 23.9 8.0 56 180-236 206-264 (283)
78 1hwt_C Protein (heme activator 25.3 24 0.00082 24.4 1.1 21 110-130 57-77 (81)
79 3coq_A Regulatory protein GAL4 25.2 64 0.0022 22.5 3.4 22 110-131 44-65 (89)
80 1nkp_B MAX protein, MYC proto- 24.6 1E+02 0.0035 21.7 4.5 44 91-135 31-78 (83)
81 2wuj_A Septum site-determining 23.5 76 0.0026 21.2 3.4 27 105-131 28-54 (57)
82 1ci6_A Transcription factor AT 23.5 86 0.0029 21.3 3.7 23 111-133 23-45 (63)
83 4go7_X Aspartokinase; transfer 23.4 1.6E+02 0.0056 24.4 6.2 61 156-216 24-86 (200)
84 2qmx_A Prephenate dehydratase; 23.1 1.8E+02 0.0063 25.5 6.7 61 177-241 209-270 (283)
85 2pnv_A Small conductance calci 21.8 1.6E+02 0.0056 18.7 4.8 30 104-133 9-38 (43)
86 3w03_C DNA repair protein XRCC 21.6 1.1E+02 0.0038 25.5 4.7 33 101-133 142-174 (184)
87 3if8_A Hzwilch, protein zwilch 20.1 70 0.0024 28.8 3.3 39 193-233 157-195 (339)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=5.6e-16 Score=116.15 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=63.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
+|..||+.||+||..||+.|..|+++||.....+|+|.++||..|++||++|+++.++|..+++.+..
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999888899999999999999999999999999988887764
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=3.7e-16 Score=117.53 Aligned_cols=70 Identities=29% Similarity=0.362 Sum_probs=60.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
..+|..|+.+||+||.+||+.|..|+++||..+ .|.+..+||.+||+||++||.+++.|+++.+.|...+
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~--~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999862 3444555688999999999999999999998887654
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=1.5e-15 Score=115.74 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=62.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 62 TMVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 62 ~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
+..+|..||++||+||..||+.|..|+++||......|+|...||.+||+||++|+++.+.|...++.+.
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999987677888888999999999999999988776665554
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.8e-15 Score=113.04 Aligned_cols=70 Identities=27% Similarity=0.381 Sum_probs=63.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 62 TMVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 62 ~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
...+|..|+.+||+||..||+.|..|+++||... ..|.|..+||..||+||++|++++++|+.+++.|..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999864 357888889999999999999999999999988864
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.60 E-value=2.6e-15 Score=112.82 Aligned_cols=68 Identities=28% Similarity=0.417 Sum_probs=60.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
+|..|+.+||+||..||+.|..|+++||... ..|.|..+||..||+||+.|++++++|+.+++.+...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999854 3577888889999999999999999998888777653
No 6
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.52 E-value=3.1e-15 Score=111.13 Aligned_cols=62 Identities=27% Similarity=0.332 Sum_probs=51.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKL-SIPATVSRVLKYIPELQQQVERLM 124 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~-Si~~~l~~Ai~YIk~Lq~~v~~L~ 124 (252)
..+|..||+.||+||..||+.|..||.+||...+.+|+ |..+||..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999975566777 799999999999999999999864
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=2.4e-15 Score=107.91 Aligned_cols=56 Identities=30% Similarity=0.391 Sum_probs=49.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC----CCCChhHHHHHHHHHHHHHHHHH
Q 025477 65 KKLYHNASERDRRKKINSLYSSLRSLLPVADQT----KKLSIPATVSRVLKYIPELQQQV 120 (252)
Q Consensus 65 ~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~----dK~Si~~~l~~Ai~YIk~Lq~~v 120 (252)
+|.+|+.+||+||++||..|..|++|||...+. .|.|+.++|+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999976443 36667777999999999999865
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.45 E-value=8.1e-14 Score=111.47 Aligned_cols=64 Identities=28% Similarity=0.377 Sum_probs=50.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTK-KLSIPATVSRVLKYIPELQQQVERLMQK 126 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~d-K~Si~~~l~~Ai~YIk~Lq~~v~~L~~~ 126 (252)
..+|..|+.+||+||.+||+.|..|++|||...+.+ |.+..+||..||+||++||++++.|++.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999886543 7777778999999999999999999865
No 9
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=6.2e-14 Score=102.74 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=51.7
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 025477 62 TMVKKLYHNASERDRRKKINSLYSSLRSLLPVA-DQTKKLSIPATVSRVLKYIPELQQQVERLM 124 (252)
Q Consensus 62 ~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~-~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~ 124 (252)
...+|.+|+.+||+||.+||+.|..|++|||.. .+++|++ ||..||+||+.||+++.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~s---IL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKST---VLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHH---HHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHH---HHHHHHHHHHHHHHhhhHHH
Confidence 466899999999999999999999999999964 3556655 58899999999999987664
No 10
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.5e-14 Score=103.90 Aligned_cols=58 Identities=31% Similarity=0.417 Sum_probs=47.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCChhHHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLPVADQT---KKLSIPATVSRVLKYIPELQQQV 120 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~---dK~Si~~~l~~Ai~YIk~Lq~~v 120 (252)
..+|..|+++||+||.+||+.|..|++|||..... .|.+..+||..||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999987632 23344445889999999999764
No 11
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.44 E-value=1.7e-13 Score=97.27 Aligned_cols=58 Identities=29% Similarity=0.423 Sum_probs=54.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 025477 64 VKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVE 121 (252)
Q Consensus 64 ~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~ 121 (252)
++|..||+.||+|++.||+.|..||.+||......|.|+.+||..||+||..||+.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3688899999999999999999999999998888899999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.37 E-value=7.9e-13 Score=96.12 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=54.1
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 025477 61 PTMVKKLYHNASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVE 121 (252)
Q Consensus 61 ~~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~ 121 (252)
....+|..||+.||+|+..||+.|..||.+||... .+|.|+.+||..||+||..||+.++
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34678999999999999999999999999999764 6799999999999999999998653
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=3.6e-13 Score=99.25 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=47.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhHHHHHHHHHHHHHHH
Q 025477 62 TMVKKLYHNASERDRRKKINSLYSSLRSLLPVA----DQTKKLSIPATVSRVLKYIPELQQ 118 (252)
Q Consensus 62 ~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP~~----~~~dK~Si~~~l~~Ai~YIk~Lq~ 118 (252)
...+|..|+.+||+||++||+.|..|++|||.. .+.||++| |..||+||+.||-
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasI---L~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHH---HHHHHHHHHHHhc
Confidence 466899999999999999999999999999975 45666665 8899999999873
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.92 E-value=3.1e-10 Score=82.10 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 025477 71 ASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQ 118 (252)
Q Consensus 71 ~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~ 118 (252)
+.||+|+..||+.|..||.+||......|.|+.+||.-||+||..||+
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 458999999999999999999999888899999999999999999985
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.80 E-value=2.4e-09 Score=98.57 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=40.2
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 025477 60 DPTMVKKLYHNASERDRRKKINSLYSSLRSLLP-VADQTKKLSIPATVSRVLKYIPELQQQV 120 (252)
Q Consensus 60 ~~~~~~k~~H~~~ER~RR~~mn~~f~~LrsllP-~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v 120 (252)
+.+..+|..|+.+||+||++||..|..|++||| ...++||++| |..||+||+.|+..-
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~i---l~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKETT 65 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHH---HHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHH---HHHHHHHHHHHHhhc
Confidence 345668999999999999999999999999999 4456777775 889999999998643
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.62 E-value=1.9e-08 Score=93.68 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=47.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCCChhHHHHHHHHHHHHHHHH
Q 025477 63 MVKKLYHNASERDRRKKINSLYSSLRSLLP----VADQTKKLSIPATVSRVLKYIPELQQQ 119 (252)
Q Consensus 63 ~~~k~~H~~~ER~RR~~mn~~f~~LrsllP----~~~~~dK~Si~~~l~~Ai~YIk~Lq~~ 119 (252)
-.+|.+|+.+||+||++||+.|..|++||| ...+.||++| |..||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~i---l~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHH---HHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHH---HHHHHHHHHHhhcc
Confidence 557999999999999999999999999999 4567788776 88999999999843
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.4e-07 Score=72.65 Aligned_cols=52 Identities=29% Similarity=0.417 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 025477 71 ASERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVER 122 (252)
Q Consensus 71 ~~ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~ 122 (252)
..||.|=..||+.|..||.+||......|.|+.+||.-||+||..|++.+++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3468888999999999999999988788999999999999999999987754
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.10 E-value=1.1e-05 Score=60.46 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 025477 77 RKKINSLYSSLRSLLPVAD-QTKKLSIPATVSRVLKYIPELQQQVERLMQK 126 (252)
Q Consensus 77 R~~mn~~f~~LrsllP~~~-~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~ 126 (252)
|..||+.+..|..|||..+ +.-|.+...||..|++||++||+..+.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999763 3447888888999999999999877766543
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.53 E-value=0.058 Score=38.97 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.+.|.+.|. +++|.+.+|...|-+.|..|++.+... .++..+..+.+.+.+ ....+.|.++|.++.
T Consensus 5 ~~~l~v~~~-DrpGila~vt~~la~~~~NI~~i~~~~-~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 5 KAIITVVGK-DKSGIVAGVSGKIAELGLNIDDISQTV-LDEYFTMMAVVSSDE--KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEES-CCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEESS--CCCHHHHHHHHHHHH
T ss_pred eEEEEEEEC-CCCCHHHHHHHHHHHcCCCEEEEEeEE-EcCEEEEEEEEEeCC--CCCHHHHHHHHHHHH
Confidence 456777775 789999999999999999999999988 677777777777654 357889999999877
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.33 E-value=0.26 Score=40.71 Aligned_cols=64 Identities=6% Similarity=0.049 Sum_probs=51.5
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.+|.|.|. +++|++.+|...|.++|+.|++++..+ .+|.++.++.+.... ...+.|.+.|..+.
T Consensus 7 ~~itv~~~-DrpGiva~vt~~La~~g~NI~d~~~~~-~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 7 LVITAVGT-DRPGICNEVVRLVTQAGCNIIDSRIAM-FGKEFTLLMLISGSP---SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEECH---HHHHHHHHHHHHHH
T ss_pred EEEEEEcC-CCCcHHHHHHHHHHHCCCCEEeeeeee-cCCceEEEEEEecCC---CCHHHHHHHHHHHH
Confidence 56777775 789999999999999999999999998 888888777776532 24566777777766
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.44 E-value=0.61 Score=38.85 Aligned_cols=50 Identities=4% Similarity=0.060 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEec
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVK 218 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~ 218 (252)
..+|.|.|. +++|++.+|...|.++|+.|+++...+ .+|.++.++.+...
T Consensus 5 ~~~ltv~~~-DrpGiva~vs~~La~~g~NI~da~q~~-~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGS-DRVGIVHDFSWALKNISANVESSRMAC-LGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEE-CCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEES
T ss_pred EEEEEEEeC-CCCcHHHHHHHHHHHCCCCEEEEEeEE-ECCeEEEEEEEEec
Confidence 356778775 789999999999999999999999998 88888777777654
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.17 E-value=0.84 Score=37.56 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=50.5
Q ss_pred ceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC--------CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 166 MEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ--------GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 166 ~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~--------~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
...+|.+.|. ++++++.+|...|-++|+.|.++...+ .+ +.++-.+.+.+. ...+.+.|++.|..+.
T Consensus 92 ~~~~l~v~~~-D~~Gil~~v~~~l~~~~~nI~~~~~~t-~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 92 YTVEVYVESD-DKLGLTEKFTQFFAQRQIGMASLSAQT-ISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEEES-CCTTHHHHHHHHHHHTTCCEEEEEEEE-EC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHH
T ss_pred ceEEEEEEeC-CCccHHHHHHHHHHHcCCcHHHhhhhc-ccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence 3456777775 688999999999999999999999987 54 233334444433 3567889999999877
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=92.69 E-value=0.33 Score=34.30 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEec
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVK 218 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~ 218 (252)
+.|.+.+. +++|.|.+|..+|.+.|+.|.+.+... .++.....+.+.+.
T Consensus 6 ~~l~v~~~-Dr~G~L~~I~~~la~~~inI~~i~~~~-~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 6 AGIRIVGE-DKNGMTNQITGVISKFDTNIRTIVLNA-KDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHTTSSSCEEEEEEEE-CSSEEEEEEEEEES
T ss_pred EEEEEEEE-CCCcHHHHHHHHHHHCCCCeEEEEEEE-cCCEEEEEEEEEEC
Confidence 45556544 678999999999999999999999987 56644455555554
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=91.49 E-value=0.84 Score=38.00 Aligned_cols=65 Identities=9% Similarity=-0.022 Sum_probs=49.8
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC------CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ------GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~------~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..+|.|.|. +++|++.+|-..|-++|+.|.++...+ .+ +.++..+.+.+.. ... +.|++.|..+.
T Consensus 93 ~~iltv~g~-DrpGiva~Vt~~La~~g~nI~~~~~~t-~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 93 EYELYVEGP-DSEGIVEAVTAVLAKKGANIVELETET-LPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEE-CCTTHHHHHHHHHHHTTCEEEEEEEEE-EECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHH
T ss_pred EEEEEEEeC-CCcCHHHHHHHHHHHcCCCEEEceeee-cccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHH
Confidence 456788875 689999999999999999999999998 65 3444455554432 345 78888888776
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=84.96 E-value=3.5 Score=37.56 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=54.4
Q ss_pred ceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 166 MEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 166 ~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..++|++.|. +++|+...|...|-++|..|++++-.. .+|.++-.+.+.+... ..+.+.|.+.|..+-
T Consensus 11 ~~~~lt~~g~-Dr~Giv~~vs~~l~~~~~nI~d~~q~~-~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 11 VSVLITVTGV-DQPGVTATLFEVLSRHGVELLNVEQVV-IRHRLTLGVLVCCPAD-VADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEEE-CCTTHHHHHHHHHTTTTCEEEEEEEEE-ETTEEEEEEEEEECHH-HHTSHHHHHHHHHHH
T ss_pred CeEEEEEEcC-CCCCHHHHHHHHHHHCCCCEEEeeeEE-ECCEeEEEEEEEecCC-cCCHHHHHHHHHHHH
Confidence 3467888875 789999999999999999999999998 8998887777776542 124567888887664
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=84.73 E-value=6.4 Score=35.01 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=50.8
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 168 ILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 168 v~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
.++++.|. +++|+..+|-..|-++|+.+++++.... ..|.+|-.+.+...+ ..+.+.|.+.|..+.
T Consensus 9 ~vLtv~c~-DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la 75 (286)
T 3n0v_A 9 WILTADCP-SMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERS 75 (286)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHH
T ss_pred EEEEEEeC-CCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHH
Confidence 56778775 7899999999999999999999998841 345655555555433 478889999998776
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=83.98 E-value=9 Score=34.40 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=51.7
Q ss_pred ceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee--CCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 166 MEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF--QGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 166 ~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~--~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
...++++.|. +++|+..+|-..|-++|+.+++++... . +|.+|-.+.+.+.+ ...+.+.|.+.|..+-
T Consensus 21 ~~~iLtv~c~-DrpGIVa~VS~~La~~g~NI~d~~q~~-d~~~g~FfMr~~~~~~~-~~~~~~~L~~~l~~la 90 (302)
T 3o1l_A 21 RTFRLVIACP-DRVGIVAKVSNFLASHNGWITEASHHS-DNLSGWFFMRHEIRADT-LPFDLDGFREAFTPIA 90 (302)
T ss_dssp CEEEEEEEEE-CCTTHHHHHHHHHHHTTCCEEEEEEEE-ETTTTEEEEEEEEEGGG-SSSCHHHHHHHHHHHH
T ss_pred ceEEEEEECC-CCCCHHHHHHHHHHHCCCCEEEeeEEe-cCCCCeEEEEEEEecCC-CCCCHHHHHHHHHHHH
Confidence 3467888875 789999999999999999999999886 5 45555544444332 2467889999998766
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=83.87 E-value=8.9 Score=34.11 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=52.3
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..++++.|. +++|+..+|-..|-++|+.+++++.... ..|.+|-.+.+.+.+. ..+.+.|.+.|..+-
T Consensus 6 ~~iLtv~g~-DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~~la 74 (288)
T 3obi_A 6 QYVLTLSCP-DRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFGVIA 74 (288)
T ss_dssp EEEEEEEEE-CCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHHHHH
T ss_pred eEEEEEECC-CCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHHHHH
Confidence 466788875 7899999999999999999999988631 3566666666665432 467889999998776
No 29
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=82.55 E-value=3.7 Score=32.07 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=29.4
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
|+|.|. .+.|++.+|+++|-+.++.+.++++..
T Consensus 3 ~~v~~~-dr~g~l~~i~~~l~~~~~ni~~~~~~~ 35 (190)
T 2jhe_A 3 LEVFCE-DRLGLTRELLDLLVLRGIDLRGIEIDP 35 (190)
T ss_dssp EEEEEC-SCTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred EEEEEe-cCCcHHHHHHHHHHHcCCCeEEEEEec
Confidence 556665 688999999999999999999999987
No 30
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=80.94 E-value=3.9 Score=35.47 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=41.8
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee----CCEEEEEEEEEecCCCCCCHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF----QGRVFYNLHLQVKSTYGLDCEVLNEKLKS 234 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~----~~~v~~ti~akv~~~~~~~~~~L~~~L~~ 234 (252)
.+.|.|... +++++|++|+.+|-+.+..+.+.+..... ++....+ +++.+. ..+.|.++|++
T Consensus 4 ~VtL~I~a~-DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAE-NKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEE-CCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEc-CCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC---CHHHHHHHHhC
Confidence 455666654 68899999999999999999999998832 3333322 777653 77888888764
No 31
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=80.85 E-value=2.3 Score=27.10 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 105 TVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 105 ~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
++.+--+||++|+++-.+|..-++.++
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 467888999999999999988877765
No 32
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=79.85 E-value=12 Score=33.27 Aligned_cols=69 Identities=10% Similarity=0.222 Sum_probs=50.4
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecC-CCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKS-TYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~-~~~~~~~~L~~~L~~~i 236 (252)
..++++.|. +++|+..+|-..|-++|+.+++++.... ..|.+|-.+.+.... ....+.+.|.+.|..+-
T Consensus 10 ~~vLtv~c~-Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la 80 (292)
T 3lou_A 10 QFVLTLSCP-SAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIA 80 (292)
T ss_dssp EEEEEEEEE-SCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHH
T ss_pred cEEEEEEcC-CCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHH
Confidence 456788875 7899999999999999999999998831 346665555554431 11467889999988766
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.20 E-value=2.3 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 111 KYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 111 ~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.|+-+|+.++++|+.+..+|+.++
T Consensus 3 aYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999888887654
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.29 E-value=15 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 73 ERDRRKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 73 ER~RR~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
||++|.......++-++ . ..-..||.+|+.+++.|+.+...|...+
T Consensus 1 Ekr~rrrerNR~AA~rc------R----------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC------R----------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHH------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777766 1 2456889999999999988888777644
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=67.08 E-value=28 Score=30.86 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=46.1
Q ss_pred eEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeee-eCCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 167 EILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFES-FQGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 167 ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~-~~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..++++.|. +++|+..+|-..|-++|+.+++++.... .+|.+|-.+.+.... .+.+.|.+.|..+-
T Consensus 7 ~~vLtv~c~-Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~L~~~f~~la 73 (287)
T 3nrb_A 7 QYVLSLACQ-DAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---AGVNDFNSAFGKVV 73 (287)
T ss_dssp EEEEEEEEE-CCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC------CHHHHHHHHHH
T ss_pred eEEEEEECC-CCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---CCHHHHHHHHHHHH
Confidence 456788875 7899999999999999999999988631 345555444444322 34458888887765
No 36
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=64.90 E-value=8.5 Score=31.55 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=41.6
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|.+.. ..++|.|.+|...+.+.|+.+.+.++..+-+ +....+|.+. .+ .-..+.|..+|.+++
T Consensus 6 IsV~v-~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 6 LSVLL-ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEE-ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHHHST
T ss_pred EEEEE-eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHcCCC
Confidence 44433 3678999999999999999999999876232 4455666665 22 223445555555543
No 37
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=62.05 E-value=15 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025477 105 TVSRVLKYIPELQQQVERLMQKKEEL 130 (252)
Q Consensus 105 ~l~~Ai~YIk~Lq~~v~~L~~~k~~l 130 (252)
+|+++-+-|..|+.+++.|++.|-+|
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999988765
No 38
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=60.27 E-value=10 Score=25.63 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 110 LKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
-.||..|+++++.|+.....+...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999988887644
No 39
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=55.62 E-value=13 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 111 KYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 111 ~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.|+.+|+.+|..|+.+...|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999888877543
No 40
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=49.00 E-value=19 Score=29.51 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=41.7
Q ss_pred EEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee-CCEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 170 IQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF-QGRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 170 I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~-~~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
|.+-. ..++|.|.+|...+.+.|+.+.+.++..+- .+..-.+|.+.- + .-..+.|..+|.+++
T Consensus 7 IsV~v-eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-d--~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 7 ISLLM-ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-P--DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEE-ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-C--HHHHHHHHHHHHHST
T ss_pred EEEEE-eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-c--HHHHHHHHHHhcCCC
Confidence 44433 367899999999999999999999887623 255556666652 2 123445555555544
No 41
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=47.71 E-value=64 Score=27.14 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeC-CEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQ-GRVFYNLHLQVKSTYGLDCEVLNEKLKSFY 236 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~-~~v~~ti~akv~~~~~~~~~~L~~~L~~~i 236 (252)
..+++.|.+|...+...|+.+.+.++..+-+ +..-.||.+.-. .-..+.|...|.+++
T Consensus 37 eN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 37 HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAYKLV 95 (193)
T ss_dssp ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHTTST
T ss_pred CCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HHHHHHHHHHhcCcC
Confidence 3678999999999999999999998875233 445567666532 234455666665544
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.64 E-value=14 Score=22.99 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+.+|+.+|++|..++..|+..+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 5688888888888887776543
No 43
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.26 E-value=14 Score=22.48 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+++|+.+|++|-.++..+...+
T Consensus 2 MnQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHH
Confidence 4678888888888887776544
No 44
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=46.95 E-value=1.6e+02 Score=26.47 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEE-EEEEEEecCCCCCCHHHHHHHHHHHHhhhhh
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGRVF-YNLHLQVKSTYGLDCEVLNEKLKSFYNEKRE 241 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~-~ti~akv~~~~~~~~~~L~~~L~~~i~~~~~ 241 (252)
.++|.|.++|..+...|+......+-. ..+... |.|.+.+++ ..+-..+.++|..+- ..+.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfiD~eg--~~~d~~v~~AL~~L~-~~~~ 278 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRP-IKGRTGTYSFIVTLDA--APWEERFRDALVEIA-EHGD 278 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEEEEESS--CTTSHHHHHHHHHHH-HTTC
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeE-CCCCCccEEEEEEEeC--CcCCHHHHHHHHHHH-HhCC
Confidence 468999999999999999999999998 677654 999988865 345567788887766 5543
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.78 E-value=28 Score=25.49 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 106 VSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 106 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
|..||+-|.-||..+++|+.++..+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988877654
No 46
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=45.44 E-value=77 Score=22.26 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhC----CcEEEEEEEeeeeCCEEEEEEEEEecCCCC-CCHHHHHHHHHHHH
Q 025477 181 PLSKILFNLEED----GLVLVNASFFESFQGRVFYNLHLQVKSTYG-LDCEVLNEKLKSFY 236 (252)
Q Consensus 181 ~Ls~il~~Lee~----gLdVvsas~S~~~~~~v~~ti~akv~~~~~-~~~~~L~~~L~~~i 236 (252)
.+.+|.+.|.+. -.+|.+..+-. .|...+.++|+.+.+... ..+..+.+++...+
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~-~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l 70 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRR-AGPRSFLEFHLVVRGDTPVEEAHRLCDELERAL 70 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEE-ETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEE-ECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHH
Confidence 455666666543 57888998888 888888999999976432 24456777777777
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.85 E-value=23 Score=24.03 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 108 RVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 108 ~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.-..||.+|+.+++.|+.+...|...+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999998888877654
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.07 E-value=24 Score=24.28 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 108 RVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 108 ~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.-.+|+.+|+.+|+.|+.+...|...+
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999988888776543
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.14 E-value=22 Score=25.16 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025477 110 LKYIPELQQQVERLMQKKEEL 130 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l 130 (252)
-.||++|+.+|.+|+...+.+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887665544
No 50
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.38 E-value=19 Score=21.94 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+.+|+.+|++|-.++..|+..+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 4678888888888888877543
No 51
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.46 E-value=76 Score=23.29 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 77 RKKINSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 77 R~~mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
|++.++.+..||.-+ .+-|..=++-|+.||+.++...++..+|+.
T Consensus 35 rqkekEqL~~LKkkl-----------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK-----------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777788888888754 344778888888999998888887777754
No 52
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.75 E-value=29 Score=23.37 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025477 108 RVLKYIPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 108 ~Ai~YIk~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.--.|+.+|+.+++.|+.+...|...+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888888888877776543
No 53
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.38 E-value=14 Score=25.15 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025477 110 LKYIPELQQQVERLMQKKEEL 130 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l 130 (252)
-.||..|+++|+.|+...+.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999998876544
No 54
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.75 E-value=23 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+.+|+.+|++|-.++++|+...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 4678889999988888887643
No 55
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=38.36 E-value=1.3e+02 Score=26.89 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=46.4
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEE-EEEEEEEecCCCCCCHHHHHHHHHHHHhhhhh
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGRV-FYNLHLQVKSTYGLDCEVLNEKLKSFYNEKRE 241 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v-~~ti~akv~~~~~~~~~~L~~~L~~~i~~~~~ 241 (252)
.++|.|.++|..+...|+.+....+-. ..+.. -|.|.+.+++ ..+-..+.+.|..+- ..+.
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfiD~eg--~~~d~~v~~aL~~L~-~~~~ 272 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRP-TGQYLGHYFFSIDADG--HATDSRVADALAGLH-RISP 272 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTSEEEEEEEES--CTTSHHHHHHHHHHH-HHCT
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEee-cCCCCccEEEEEEEeC--CCCcHHHHHHHHHHH-HhcC
Confidence 578999999999999999999999988 55544 4888888865 244456777777665 5443
No 56
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.69 E-value=18 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+++|+.+|++|..++..|...+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEV 24 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHH
Confidence 4677788888877777766543
No 57
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=36.54 E-value=1.2e+02 Score=24.18 Aligned_cols=41 Identities=7% Similarity=-0.026 Sum_probs=28.1
Q ss_pred eCCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 163 LSDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 163 l~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
.......|.|.....+++.+.+|+..|.+.|+.|...+.+.
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34455667775334567889999999999995555544443
No 58
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.58 E-value=24 Score=21.57 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 025477 114 PELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 114 k~Lq~~v~~L~~~k~~l~~~~ 134 (252)
.+|+.+|++|-.++..|...+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHH
Confidence 478888888888887777554
No 59
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=35.22 E-value=1.1e+02 Score=22.33 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhCC--cEEEEEEEeeeeCCEEEEEEEEEecCCCC-CCHHHHHHHHHHHH
Q 025477 181 PLSKILFNLEEDG--LVLVNASFFESFQGRVFYNLHLQVKSTYG-LDCEVLNEKLKSFY 236 (252)
Q Consensus 181 ~Ls~il~~Lee~g--LdVvsas~S~~~~~~v~~ti~akv~~~~~-~~~~~L~~~L~~~i 236 (252)
.+.+|...|.+.. ..|.+..+-. .|+.++.++++.+.+... ..+..+.+++...|
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~-~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L 68 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRR-VGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEM 68 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEEC-SCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEE-ECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4566777776653 5677888887 788888999999976432 24456777777777
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=34.03 E-value=21 Score=21.92 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+++|+.+|++|-.++..|...+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAV 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHH
Confidence 4678888888888887776543
No 61
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=33.77 E-value=99 Score=25.53 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHH-HHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025477 66 KLYHNASERDRRKK-INSLYSSLRSLLPVADQTKKLSIPATVSRVLKYIPELQQQVERLMQKKEELLS 132 (252)
Q Consensus 66 k~~H~~~ER~RR~~-mn~~f~~LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 132 (252)
+......||+++.. -.+.+..||..+-.. +-.+-|...-.||+-|.+++..++++.++...
T Consensus 38 ~l~~~e~~r~k~~~h~~~k~~qlre~~d~g------tt~~~i~~m~~yI~llrErea~lEqkVaeq~e 99 (169)
T 3k29_A 38 KLRERESERDKVKNHYMQKIRQLREQLDDG------TTSDAILKMKAYIKVVAIQLSEEEEKVNKQKE 99 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776642 334578888865433 33333667889999999999999987665544
No 62
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.45 E-value=32 Score=21.06 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+.+|+.+|++|-.++..|...+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 5678888888888877776543
No 63
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=32.94 E-value=1.6e+02 Score=22.23 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCEEEEEEEE
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGRVFYNLHL 215 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~v~~ti~a 215 (252)
..++|.+.+++++|.+.|+.|.+..++. .+++....|..
T Consensus 80 ~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~ 118 (144)
T 2f06_A 80 PNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP 118 (144)
T ss_dssp ESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence 3688999999999999999997765553 35555444433
No 64
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=32.19 E-value=11 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.581 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhhhccCCC
Q 025477 225 CEVLNEKLKSFYNEKREDLFPS 246 (252)
Q Consensus 225 ~~~L~~~L~~~i~~~~~~~~~~ 246 (252)
+..|..+++.+| +|++.++|+
T Consensus 4 cr~likriqa~i-pk~grmlpq 24 (34)
T 1ssz_A 4 CRALIKRIQAMI-PKGGRMLPQ 24 (34)
T ss_dssp HHHHHHHHHHHC-SSSCCCCHH
T ss_pred HHHHHHHHHHHc-cccchhhHH
Confidence 346888999999 999999985
No 65
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.04 E-value=26 Score=21.47 Aligned_cols=22 Identities=9% Similarity=0.474 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+.+|+.+|++|-.++..+...+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHH
Confidence 4688888888888888776543
No 66
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=29.65 E-value=57 Score=18.36 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025477 106 VSRVLKYIPELQQQVER 122 (252)
Q Consensus 106 l~~Ai~YIk~Lq~~v~~ 122 (252)
|-+|-+|+.+|+.+++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56888999988887653
No 67
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.10 E-value=1.9e+02 Score=22.52 Aligned_cols=41 Identities=15% Similarity=-0.012 Sum_probs=29.8
Q ss_pred eCCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 163 LSDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 163 l~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
.......|.+.+...+++.+.+++.+|.+.|+.|...+.+.
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~ 52 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGV 52 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCC
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCC
Confidence 34455667766544567889999999999998887765553
No 68
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.02 E-value=38 Score=20.74 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025477 113 IPELQQQVERLMQKKEELLSKI 134 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~~ 134 (252)
+.+|+.+|++|-.++..++..+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHH
Confidence 4678888888888888777544
No 69
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=28.77 E-value=1.1e+02 Score=24.20 Aligned_cols=39 Identities=8% Similarity=-0.087 Sum_probs=28.2
Q ss_pred CceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEee
Q 025477 165 DMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFE 203 (252)
Q Consensus 165 ~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~ 203 (252)
.....|.|.+...+++.+.+|+..|.++|+.|...+.+.
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~ 61 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNV 61 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCC
Confidence 344566665423567889999999999999888776554
No 70
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.77 E-value=47 Score=22.37 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 025477 71 ASERDRRKKINSLYSSLRSLLPVAD 95 (252)
Q Consensus 71 ~~ER~RR~~mn~~f~~LrsllP~~~ 95 (252)
.++|-+|...++-+.+|+++.|..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4678889999999999999999764
No 71
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.12 E-value=44 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025477 110 LKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
-.||..|+++++.|+....++.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999998776654
No 72
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=26.68 E-value=1.2e+02 Score=26.48 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=45.6
Q ss_pred CCCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-EEEEEEEEecCCCCCCHHHHHHHHHHHHhhhh
Q 025477 176 KVHKCPLSKILFNLEEDGLVLVNASFFESFQGR-VFYNLHLQVKSTYGLDCEVLNEKLKSFYNEKR 240 (252)
Q Consensus 176 ~~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-v~~ti~akv~~~~~~~~~~L~~~L~~~i~~~~ 240 (252)
..++|.|.++|..+...|+.+....+=. ..+. .-|.|.+.++ . .+-..+.+.|..+- ..+
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfiD~e-~--~~d~~v~~aL~~L~-~~~ 257 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRP-LKTQLGMYRFFVQAD-S--AITTDIKKVIAILE-TLD 257 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTCEEEEEEES-C--CSCHHHHHHHHHHH-HTT
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEee-cCCCCccEEEEEEEe-c--CCcHHHHHHHHHHH-Hhc
Confidence 3568999999999999999999999988 5554 4488888876 2 34456777777665 443
No 73
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.34 E-value=90 Score=22.60 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHhcCCCCCCCCCCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhh
Q 025477 87 LRSLLPVADQTKKLSIPATVSRVLKYIPELQ----QQVERLMQKKEELLSKI 134 (252)
Q Consensus 87 LrsllP~~~~~dK~Si~~~l~~Ai~YIk~Lq----~~v~~L~~~k~~l~~~~ 134 (252)
+--.+|...+.+|++|+.---+=|.++..-. ..++.|..+.+.|..++
T Consensus 31 ~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 31 QIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp TCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666779999999977778888877554 44556777777766543
No 74
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.19 E-value=50 Score=20.21 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 025477 113 IPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 113 Ik~Lq~~v~~L~~~k~~l~~~ 133 (252)
+++|+.+|++|-.++..+...
T Consensus 3 MnQledKvEel~~~~~~l~nE 23 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHH
Confidence 467777888877777666543
No 75
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.45 E-value=99 Score=17.50 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025477 108 RVLKYIPELQQQVERLMQK 126 (252)
Q Consensus 108 ~Ai~YIk~Lq~~v~~L~~~ 126 (252)
+--+-+.+||+++..|.++
T Consensus 5 elykeledlqerlrklrkk 23 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556667777666554
No 76
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=25.42 E-value=2e+02 Score=23.18 Aligned_cols=54 Identities=9% Similarity=-0.033 Sum_probs=34.9
Q ss_pred eCCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEEEeeee--CCEEEEEEEEE
Q 025477 163 LSDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNASFFESF--QGRVFYNLHLQ 216 (252)
Q Consensus 163 l~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas~S~~~--~~~v~~ti~ak 216 (252)
.......|.|......++.+.+|+..|.+.|+.|.-.+-+.+- +|..-.+|.+.
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 3445566776654467788999999999999888766543311 34444444443
No 77
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=25.26 E-value=2.5e+02 Score=23.87 Aligned_cols=56 Identities=7% Similarity=0.044 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhCC--cEEEEEEEeeeeCCEEEEEEEEEecCCCC-CCHHHHHHHHHHHH
Q 025477 180 CPLSKILFNLEEDG--LVLVNASFFESFQGRVFYNLHLQVKSTYG-LDCEVLNEKLKSFY 236 (252)
Q Consensus 180 ~~Ls~il~~Lee~g--LdVvsas~S~~~~~~v~~ti~akv~~~~~-~~~~~L~~~L~~~i 236 (252)
....++.+.+++.. .+|.+..+.. .|...+.++|+.+.+... .+.+++.+++++.+
T Consensus 206 ~~~~~i~~~i~~~~~V~~v~~l~~~~-~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l 264 (283)
T 3h90_A 206 EERQEIIDIVTSWPGVSGAHDLRTRQ-SGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAI 264 (283)
T ss_dssp HHHHHHHHHHHHSSSCSEEEEEEEEE-ETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccceeeEEEE-ECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 35667777777763 6788888888 888888899999976432 24567888888887
No 78
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.26 E-value=24 Score=24.42 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025477 110 LKYIPELQQQVERLMQKKEEL 130 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l 130 (252)
-.||..|+++|+.||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999998765544
No 79
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.15 E-value=64 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025477 110 LKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 110 i~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
..||..|+++++.|+.....+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3699999999999998777654
No 80
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.58 E-value=1e+02 Score=21.68 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhc
Q 025477 91 LPVADQTKKLSIPATVSRVLKYIP----ELQQQVERLMQKKEELLSKIS 135 (252)
Q Consensus 91 lP~~~~~dK~Si~~~l~~Ai~YIk----~Lq~~v~~L~~~k~~l~~~~~ 135 (252)
+|... .+|++|+.---+=|.+++ .|+.++++|..+.+.|...+.
T Consensus 31 ~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 31 LQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp GTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 578887765556666655 678888889888888876553
No 81
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.48 E-value=76 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025477 105 TVSRVLKYIPELQQQVERLMQKKEELL 131 (252)
Q Consensus 105 ~l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 131 (252)
-|++.++-+..|.+++++|+.+.+.++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666555443
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.46 E-value=86 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 025477 111 KYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 111 ~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
.++..|+.++++|+.+..+|...
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~ 45 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKER 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666544
No 83
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=23.43 E-value=1.6e+02 Score=24.43 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=39.9
Q ss_pred ceeeeeeeCCceEEEEEEeCCCCCChHHHHHHHHHhCCcEEEEEE--EeeeeCCEEEEEEEEE
Q 025477 156 ASISASRLSDMEILIQISSYKVHKCPLSKILFNLEEDGLVLVNAS--FFESFQGRVFYNLHLQ 216 (252)
Q Consensus 156 ~~v~v~~l~~~ev~I~Is~~~~~~~~Ls~il~~Lee~gLdVvsas--~S~~~~~~v~~ti~ak 216 (252)
+.|+-.......+.|.|.....+++.+.+|+.+|.+.|+.|--.. ++...++....++.+.
T Consensus 24 ~vVtGIa~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 24 PILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp CEEEEEEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred CcEEEEEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 334433445567788887656788999999999999987766553 3331234555666655
No 84
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=23.13 E-value=1.8e+02 Score=25.48 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=47.0
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEEEeeeeCCE-EEEEEEEEecCCCCCCHHHHHHHHHHHHhhhhh
Q 025477 177 VHKCPLSKILFNLEEDGLVLVNASFFESFQGR-VFYNLHLQVKSTYGLDCEVLNEKLKSFYNEKRE 241 (252)
Q Consensus 177 ~~~~~Ls~il~~Lee~gLdVvsas~S~~~~~~-v~~ti~akv~~~~~~~~~~L~~~L~~~i~~~~~ 241 (252)
.++|.|.++|..+...|+.+....+=. ..+. .-|.|.+.+++. .+-..+.+.|..+- +.+.
T Consensus 209 ~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfvD~eg~--~~d~~v~~aL~~L~-~~~~ 270 (283)
T 2qmx_A 209 NEQGSLFRALATFALRGIDLTKIESRP-SRKKAFEYLFYADFIGH--REDQNVHNALENLR-EFAT 270 (283)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTEEEEEEEEESC--TTSHHHHHHHHHHH-TTCS
T ss_pred CCCchHHHHHHHHHHcCCCeeEEEeeE-cCCCCcceEEEEEEecC--CCcHHHHHHHHHHH-HhcC
Confidence 568999999999999999999999988 5554 568888888752 44456777777665 5443
No 85
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.81 E-value=1.6e+02 Score=18.74 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 104 ATVSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 104 ~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
+++.+--.--..|++|+..|+.|.+.+...
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677778888888877776654
No 86
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.59 E-value=1.1e+02 Score=25.52 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025477 101 SIPATVSRVLKYIPELQQQVERLMQKKEELLSK 133 (252)
Q Consensus 101 Si~~~l~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 133 (252)
++.++++-+++-|..|+.+++.|++..+.|...
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566688888899999999999999998888753
No 87
>3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel, alternative splicing, cell cycle, CE division, kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Probab=20.08 E-value=70 Score=28.82 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=29.9
Q ss_pred CcEEEEEEEeeeeCCEEEEEEEEEecCCCCCCHHHHHHHHH
Q 025477 193 GLVLVNASFFESFQGRVFYNLHLQVKSTYGLDCEVLNEKLK 233 (252)
Q Consensus 193 gLdVvsas~S~~~~~~v~~ti~akv~~~~~~~~~~L~~~L~ 233 (252)
|.+.+.++-. +-|.++|++.|+++..+-++.+.|++.=+
T Consensus 157 GAe~i~~~~~--itGi~l~~vtc~aDkn~~~nLE~LK~~Hk 195 (339)
T 3if8_A 157 GAELITTNNS--ITGIVLYVVSCKADKNYSVNLENLKNLHK 195 (339)
T ss_dssp EEEEEEETTE--EEEEEEEEEEEEEESCCCCCHHHHHHHHH
T ss_pred cceeEecCCc--eeeEEEEEEEecCCcccCCCHHHHHHHHh
Confidence 5666666533 36788999999998888899999987543
Done!