BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025478
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus
musculus GN=Alkbh2 PE=1 SV=1
Length = 239
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 83 STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
S PR G+T +SG P W P L+ + D V +V G FN +L+NRYK
Sbjct: 85 SVPRKQATYGDAGLT-YTFSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFNFVLVNRYK 140
Query: 143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKK 202
G D++G H DDE+ IASVSFG RDF+ + K S+ + RRT
Sbjct: 141 DGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRGKRPRRT------------ 188
Query: 203 GNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 251
++ L HGS+L+M T W HS+P R + + R+NLTFR +L
Sbjct: 189 --VEVVRLQLAHGSLLMMNPPTNTHWYHSLPIRKRVLAPRVNLTFRKIL 235
>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos
taurus GN=ALKBH2 PE=2 SV=1
Length = 278
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 43/269 (15%)
Query: 2 SLRFRAKEKEAKANPDD--DDEKNQKKQRMVVDLGNG--SEVIYFPRI------------ 45
SL+ R ++++ P ++E N KK GNG S + + RI
Sbjct: 12 SLKRRMEQEQTGGGPAGLAEEEGNSKKNPRRAAPGNGVDSAGLTWGRIRAEGLNCDYTIL 71
Query: 46 IKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYS 102
++ + F L + + ++VFG+ S PR G+T +S
Sbjct: 72 FGKAEADEIFQELEKEVEYFTGALARVQVFGK------WHSVPRKQATYGDTGLT-YTFS 124
Query: 103 GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTP 162
G P W P L+ + D V ++ G FN +L+NRYK G D++G H DDE+
Sbjct: 125 GLTLSPKPW--IPVLERVRDRV-SLVTGQTFNFVLINRYKDGQDHIGEHRDDERELALGS 181
Query: 163 EIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRG 222
IASVSFG RDF+ + K S+ R L+ L HGS+L+M
Sbjct: 182 PIASVSFGACRDFVFRHKDSRGKHPSR--------------RLEVVRLQLAHGSLLMMNH 227
Query: 223 YTQRDWIHSVPRRAKAESTRINLTFRHVL 251
T W HS+P R K + R+NLTFR +L
Sbjct: 228 PTNTHWYHSLPVRKKVLAPRVNLTFRKIL 256
>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo
sapiens GN=ALKBH2 PE=1 SV=1
Length = 261
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 69 IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
++VFG+ S PR G+T +SG P W P L+ I D V V
Sbjct: 99 VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 149
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDR 188
G FN +L+NRYK G D++G H DDE+ IASVSFG RDF+ + K S+
Sbjct: 150 -GQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPS 208
Query: 189 RTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 248
R + L HGS+L+M T W HS+P R K + R+NLTFR
Sbjct: 209 R--------------RVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFR 254
Query: 249 HVL 251
+L
Sbjct: 255 KIL 257
>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos
taurus GN=ALKBH3 PE=2 SV=1
Length = 286
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
S V P + ++++ F+ L +PW + T PR T + G
Sbjct: 88 SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRT------GIRDDVTYQQPRLTAWY---GE 138
Query: 97 TQLIYS--GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADD 154
YS P+P+ + P+ +L ++ G FNSLL N Y+ D V WH+DD
Sbjct: 139 LPYTYSRITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHSDD 194
Query: 155 EKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKH 214
E G P IAS+SFG R F ++ KP D +R+K L H
Sbjct: 195 EPSLGRCPIIASLSFGATRMFEMRKKPPPE----DNGDYTYVERVK---------IPLDH 241
Query: 215 GSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 250
G++L+M G TQ DW H VP+ + RINLTFR V
Sbjct: 242 GTLLIMEGATQADWQHRVPKEYHSREPRINLTFRTV 277
>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus
norvegicus GN=Alkbh3 PE=2 SV=1
Length = 295
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 130 GSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRR 189
G FNSLL N Y+ D V WH+DDE GS P IAS+SFG R F ++ KP
Sbjct: 170 GHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKPPPE----E 225
Query: 190 TDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRH 249
D +R+K L HG++L+M G TQ DW H VP+ + R+NLTFR
Sbjct: 226 NGDYTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSRERRVNLTFRT 276
Query: 250 V 250
V
Sbjct: 277 V 277
>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo
sapiens GN=ALKBH3 PE=1 SV=1
Length = 286
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
S V +P + ++++ + L +PW + T + PR T +
Sbjct: 88 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRT------GIREDITYQQPRLTAWYG---- 137
Query: 97 TQLIYSGYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHA 152
+L Y+ R P+P+ + P+ L ++ G FNSLL N Y+ D V WH+
Sbjct: 138 -ELPYTYSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHS 192
Query: 153 DDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTL 212
DDE G P IAS+SFG R F ++ KP D +R+K L
Sbjct: 193 DDEPSLGRCPIIASLSFGATRTFEMRKKPPPE----ENGDYTYVERVK---------IPL 239
Query: 213 KHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 250
HG++L+M G TQ DW H VP+ + R+NLTFR V
Sbjct: 240 DHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTV 277
>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus
musculus GN=Alkbh3 PE=1 SV=1
Length = 286
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 133 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDD 192
FNSLL N Y+ D V WH+DDE GS P IAS+SFG R F ++ KP D
Sbjct: 173 FNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKPPPE----ENGD 228
Query: 193 EPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 250
+R+K L HG++L+M G TQ DW H VP+ + R+NLTFR V
Sbjct: 229 YTYVERVK---------IPLDHGTLLIMEGATQADWQHRVPKEYHSRQPRVNLTFRTV 277
>sp|Q91QZ3|RDRP_CLBVS RNA replication protein OS=Citrus leaf blotch virus (isolate Nagami
kumquat/France/SRA-153/1984) GN=ORF1 PE=3 SV=1
Length = 1962
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 37/146 (25%)
Query: 106 PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIA 165
PH SW P L++I+ I + G FN L+N Y+ N +G+H D+E++Y P +
Sbjct: 854 PHN-SW--VPSLEEIIQICGQ---GDDFNCALINFYEA-NSSLGFHRDNERVYNDDPILT 906
Query: 166 SVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQ 225
+FG E F ++ K D+ T SF + GS +M Q
Sbjct: 907 VCTFG-EGRFTIEFK------DQVT------------------SFLMTAGSFFLMPKGFQ 941
Query: 226 RDWIHSVPRRAKAESTRINLTFR-HV 250
+ HSV E +R+++TFR HV
Sbjct: 942 KKARHSVSN----EMSRVSITFRKHV 963
>sp|B1PS76|RDRP_LOLV RNA-directed RNA polymerase OS=Lolium latent virus (isolate
Lolium/USA/US1/-) GN=ORF1 PE=3 SV=1
Length = 1729
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 104 YRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPE 163
Y H + + P+ D L + L + ++ L+ RY+ + VG HADDE+ Y
Sbjct: 715 YGRHEHRSQSWLPVIDSLQVALGL--DESYDHCLIQRYRK-HARVGLHADDEECYEPDST 771
Query: 164 IASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGY 223
I +++ DFL+ +R TD + TL+H ML M
Sbjct: 772 IVTLNLYGNADFLI---------ERNTDKA-------------SETITLQHNDMLFMPSG 809
Query: 224 TQRDWIHSVPRRAKAESTRINLTFRH 249
Q H+V R+++TFR+
Sbjct: 810 MQVTHRHAV---CSLYEGRVSITFRN 832
>sp|Q5UQK2|YR406_MIMIV Uncharacterized protein R406 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R406 PE=4 SV=1
Length = 191
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 114 FPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCER 173
F P +L ++ + G F+S L+ Y G D +G+H D + G IA V+FG R
Sbjct: 69 FTPTVHMLKKKIEEIIGVEFDSALIFHYIDGKDSMGYHYDTIGV-GRGNHIAGVTFGSSR 127
Query: 174 DFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSV- 232
L ++ +++ + + F L +G + M Q+ + H++
Sbjct: 128 --CLGVRNNETNE--------------------KEFFNLGNGDIFYMFDDCQKKYKHAIL 165
Query: 233 PRRAKAESTRINLTFRHV 250
+ + RI +TFR +
Sbjct: 166 ESKEENPGPRIAITFRQM 183
>sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry
plant/USA: Arkansas/C3ARK/2005) PE=3 SV=1
Length = 3491
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 29/146 (19%)
Query: 104 YRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPE 163
Y HP +D P D LD K L G+++N+ L+ Y G D + +H DDE Y T
Sbjct: 159 YGHHPIYYDTHP-WNDELD---KYLGGAKYNTALVQVYDGTRD-LPYHKDDEPCYDITN- 212
Query: 164 IASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGY 223
P ++ T D +SK ++ + + G+++
Sbjct: 213 ----------------NPIRTVNVTGTGDLCISKDKRRL----YETIPMTSGTVITFPAT 252
Query: 224 TQRDWIHSVPRRAKAESTRINLTFRH 249
Q ++ H+V + RI++TFR+
Sbjct: 253 MQENFYHAV---RNPSAGRISITFRN 275
>sp|O71189|R1AB_GLRV3 Replicase polyprotein 1ab OS=Grapevine leafroll-associated virus 3
(isolate United States/NY1) GN=1a-1b PE=3 SV=3
Length = 2772
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 122 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
DI+ + S F+ L+ +YK G V +HADDE+ Y S I +V+ + +F
Sbjct: 1591 DILTAIKYPSVFDHCLVQKYKMGGG-VPFHADDEECYPSDNPILTVNLVGKANF------ 1643
Query: 182 SKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAEST 241
S + +K G + + G +M QR +HSV +
Sbjct: 1644 --------------STKCRKGGKV--MVINVASGDYFLMPCGFQRTHLHSVN---SIDEG 1684
Query: 242 RINLTFR 248
RI+LTFR
Sbjct: 1685 RISLTFR 1691
>sp|O71188|R1A_GLRV3 Replicase protein 1a OS=Grapevine leafroll-associated virus 3
(isolate United States/NY1) GN=1a PE=3 SV=2
Length = 2233
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 122 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
DI+ + S F+ L+ +YK G V +HADDE+ Y S I +V+ + +F
Sbjct: 1591 DILTAIKYPSVFDHCLVQKYKMGGG-VPFHADDEECYPSDNPILTVNLVGKANF------ 1643
Query: 182 SKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAEST 241
S + +K G + + G +M QR +HSV +
Sbjct: 1644 --------------STKCRKGGKV--MVINVASGDYFLMPCGFQRTHLHSV---NSIDEG 1684
Query: 242 RINLTFR 248
RI+LTFR
Sbjct: 1685 RISLTFR 1691
>sp|Q9UT12|YLW2_SCHPO Uncharacterized protein P8A3.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.02c PE=3 SV=1
Length = 225
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 212 LKHGSMLVMRGYTQRDWIHSVPRRAK------------AESTRINLTFRHVLQ 252
L+ GS+L+M G + DW H +P RA + S R+++T R +++
Sbjct: 168 LEKGSLLLMSGTARYDWFHEIPFRAGDWVMNDGEEKWVSRSQRLSVTMRRIIE 220
>sp|B3N4V1|TOTM_DROER Protein Turandot M OS=Drosophila erecta GN=TotM PE=3 SV=1
Length = 131
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 12 AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPW 64
K N +DDDE +KQR++ G+ S V R ++D KF+D + +PW
Sbjct: 19 GKVNAEDDDEFRTEKQRLLRVYGDSS-VDEATRYRNVDDLVKFYDKYSTLLPW 70
>sp|Q6ANM7|NUOD_DESPS NADH-quinone oxidoreductase subunit D OS=Desulfotalea psychrophila
(strain LSv54 / DSM 12343) GN=nuoD PE=3 SV=1
Length = 372
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 22/105 (20%)
Query: 102 SGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGST 161
G+ P Y++DD + ILD+ L+ + GSR L Y+ G Y DDE L G+
Sbjct: 128 GGFSPLMYAFDD---REQILDL-LESITGSR---LTYCYYRFGGLY--NDIDDEFLVGT- 177
Query: 162 PEIASVSFGCERDFLLKIKPS-KSYQDRRTDDEPVSKRLKKKGNL 205
R F+++++ S K+Y+D T++ + KRLK G++
Sbjct: 178 -----------RKFIIRMRKSLKTYRDLVTNNIILMKRLKDIGHI 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,613,747
Number of Sequences: 539616
Number of extensions: 4437109
Number of successful extensions: 10651
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10630
Number of HSP's gapped (non-prelim): 23
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)