BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025479
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JWQ6|TAL_ARTS2 Transaldolase OS=Arthrobacter sp. (strain FB24) GN=tal PE=3 SV=1
Length = 371
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGK 185
LW S V S P T+YVT ++PGVVN + L A D+G + D +
Sbjct: 265 LW--ASTGVKDPSYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDT-------VTR 315
Query: 186 GFSDANGVKEALAAL 200
G+ DAN AL AL
Sbjct: 316 GYDDANATLNALDAL 330
>sp|B8H7N3|TAL_ARTCA Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC
700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1
Length = 371
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGK 185
LW S V + P T+YVT ++PGVVN + L A D+G + D
Sbjct: 265 LW--ASTGVKDPAYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDT-------VSG 315
Query: 186 GFSDANGVKEALAAL 200
++DAN +AL L
Sbjct: 316 TYADANATLDALEKL 330
>sp|A0LTY8|TAL_ACIC1 Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 /
11B) GN=tal PE=3 SV=1
Length = 372
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGK 185
LW + S S P T+YVT ++PG VN + L+A D+G I D R
Sbjct: 264 LWASTS--TKDPSLPDTLYVTELVAPGTVNTMPESTLQAVYDHGVIRGDTIRGY------ 315
Query: 186 GFSDANGVKEALAAL 200
++DA +ALA L
Sbjct: 316 -YADAQATLDALATL 329
>sp|Q63398|COE1_RAT Transcription factor COE1 OS=Rattus norvegicus GN=Ebf1 PE=1 SV=2
Length = 584
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 2 LSRKLKQLC--FPGRAFSYGLNWALAGRGVVVNDKAF-------QNLTTSELQQKGATIA 52
LS K KQ C PGR LN G K + L + ++ A +
Sbjct: 320 LSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLV 379
Query: 53 ESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSS 106
E+L G+P + +L ++DI++A Y+ + + L ++AN V G +G +S
Sbjct: 380 EALYGMPHNNQEIILKRAADIAEALYS--VPRNHNQLPALANTSVHAGMMGVNS 431
>sp|Q07802|COE1_MOUSE Transcription factor COE1 OS=Mus musculus GN=Ebf1 PE=1 SV=1
Length = 591
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 2 LSRKLKQLC--FPGRAFSYGLNWALAGRGVVVNDKAF-------QNLTTSELQQKGATIA 52
LS K KQ C PGR LN G K + L + ++ A +
Sbjct: 327 LSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLV 386
Query: 53 ESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSS 106
E+L G+P + +L ++DI++A Y+ + + L ++AN V G +G +S
Sbjct: 387 EALYGMPHNNQEIILKRAADIAEALYS--VPRNHNQLPALANTSVHAGMMGVNS 438
>sp|Q9UH73|COE1_HUMAN Transcription factor COE1 OS=Homo sapiens GN=EBF1 PE=1 SV=2
Length = 591
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 2 LSRKLKQLC--FPGRAFSYGLNWALAGRGVVVNDKAF-------QNLTTSELQQKGATIA 52
LS K KQ C PGR LN G K + L + ++ A +
Sbjct: 327 LSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLV 386
Query: 53 ESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSS 106
E+L G+P + +L ++DI++A Y+ + + L ++AN V G +G +S
Sbjct: 387 EALYGMPHNNQEIILKRAADIAEALYS--VPRNHNQLPALANTSVHAGMMGVNS 438
>sp|A9WT40|TAL_RENSM Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 /
DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) GN=tal
PE=3 SV=1
Length = 374
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGK 185
LW S V + P T+YVT ++P VVN + L A D+G ++ + + G+
Sbjct: 265 LW--ASTGVKDPAYPDTLYVTELVAPNVVNTMPEKTLDATADHGVVSGN------TISGR 316
Query: 186 GFSDANGVKEALAAL 200
+ +ANGV AL L
Sbjct: 317 -YDEANGVLNALEGL 330
>sp|Q6MY57|PAN3_ASPFU PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pan3 PE=3 SV=2
Length = 662
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 102 VGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVG 161
V SS++ D+K R DSPS L S +P+ S P T T+ISP NA
Sbjct: 57 VNSSNQSDSKKRFNVDSPSFTPSLLSSNGSSPT------STPATTKKMTTISPKAANAAP 110
Query: 162 LRAQ 165
+ +
Sbjct: 111 FQPR 114
>sp|Q3SLP4|RL22_THIDA 50S ribosomal protein L22 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rplV PE=3 SV=1
Length = 109
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 46 QKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSS 105
QKG +A+ + GL V N+L S + A ++K+V S+IAN +GA
Sbjct: 15 QKGRLVADQIRGLRVEKALNILA----FSPKKGAGIIKKVLE--SAIANAEHNEGA---- 64
Query: 106 SECDA-KVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYV 148
+ DA KV+ I +VLK + K +S +C +TV V
Sbjct: 65 -DIDALKVKTIYVDQGSVLKRFTARAKGRGNRISKPTCHITVTV 107
>sp|Q555C6|VP13B_DICDI Putative vacuolar protein sorting-associated protein 13B
OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1
Length = 6061
Score = 31.2 bits (69), Expect = 8.2, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 25/109 (22%)
Query: 111 KVRVISDSPSAVLKLSSILWKTPS-------------RAVSHDSCPLTVYVTTSISPGVV 157
++ ++ D L+L+S+L+KT R + DS P +
Sbjct: 4638 EIHLLRDKEKQALELNSVLFKTRDFRAHGSLNAHVAIRLIDQDSGP----------SQWI 4687
Query: 158 NAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVII 206
+ V + GDN + +++L++C G+ + N K +A L PV+I
Sbjct: 4688 HGVSINQIGDNFYFPPFGNKANLVVCEVGWDEKNESK--IATLRSPVLI 4734
>sp|Q6AF36|TAL_LEIXX Transaldolase OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=tal
PE=3 SV=1
Length = 381
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGK 185
LW S V S P T+YVT ++P VN + L A D+ +A D + G+
Sbjct: 272 LW--ASTGVKDPSLPDTLYVTELVAPNTVNTMPEKTLDATFDHAQLAGD------TVTGE 323
Query: 186 GFSDANGVKEALAAL 200
++ A GV +ALAAL
Sbjct: 324 -YAGAQGVLDALAAL 337
>sp|Q0RH18|TAL_FRAAA Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1
Length = 371
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGK 185
LW + S S P T+YV+ I+PG VN + L+A D+G + + R
Sbjct: 265 LWASTS--TKDPSLPDTIYVSELIAPGTVNTMPEATLQAFADHGQVKGETIRPH------ 316
Query: 186 GFSDANGVKEALAAL 200
+ DA V ALAA+
Sbjct: 317 -YDDARQVFAALAAV 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,091,099
Number of Sequences: 539616
Number of extensions: 3321122
Number of successful extensions: 8976
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 8969
Number of HSP's gapped (non-prelim): 28
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)