Query 025479
Match_columns 252
No_of_seqs 129 out of 574
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytm_A Phosphoenolpyruvate car 100.0 3.8E-56 1.3E-60 435.3 18.3 202 19-228 2-246 (532)
2 2olr_A Phosphoenolpyruvate car 100.0 4E-55 1.4E-59 428.1 18.1 197 21-228 9-252 (540)
3 1ii2_A Phosphoenolpyruvate car 100.0 3.2E-55 1.1E-59 428.2 15.9 190 33-228 2-224 (524)
4 1j3b_A ATP-dependent phosphoen 100.0 7.8E-51 2.7E-55 397.6 15.5 199 23-228 3-236 (529)
5 3ijw_A Aminoglycoside N3-acety 38.4 52 0.0018 29.4 5.8 69 18-86 18-101 (268)
6 3moe_A Phosphoenolpyruvate car 27.4 36 0.0012 34.1 3.1 133 70-214 116-266 (624)
7 2jmk_A Hypothetical protein TA 25.7 67 0.0023 25.1 3.8 30 169-200 67-96 (111)
8 2zci_A Phosphoenolpyruvate car 24.2 5.5E+02 0.019 25.7 11.7 138 70-217 101-253 (610)
9 3sma_A FRBF; N-acetyl transfer 22.4 87 0.003 28.3 4.5 67 19-85 26-107 (286)
10 2faf_A Phosphoenolpyruvate car 22.1 1.5E+02 0.0052 29.6 6.4 138 71-217 102-253 (608)
No 1
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=3.8e-56 Score=435.28 Aligned_cols=202 Identities=14% Similarity=0.195 Sum_probs=188.0
Q ss_pred hhhhhhhhCCCCcCcceeecCChHHHHHHHhh---------ccccCCceEEEe-------------------eccccC--
Q 025479 19 GLNWALAGRGVVVNDKAFQNLTTSELQQKGAT---------IAESLSGLPVYV-------------------RGNLLG-- 68 (252)
Q Consensus 19 ~~n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~~---------~~~~~Gal~v~T-------------------~~~v~~-- 68 (252)
.|.+.|+.+||++..++|||+++++|+|+|++ .++++|+++++| ++ |||
T Consensus 2 ~~~~~~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg~l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~-i~w~~ 80 (532)
T 1ytm_A 2 SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKE-IWWTS 80 (532)
T ss_dssp CHHHHHHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCEEECTTSSEEECCTTCCSBCGGGEEEECSGGGTT-SCCCC
T ss_pred ccccchHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccceecCCCCEEEcCCCcccCCCCceEEeCCCCccc-ccccc
Confidence 35688999999998899999999999999854 466899999998 22 777
Q ss_pred ---C--CCCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCC
Q 025479 69 ---G--SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCP 143 (252)
Q Consensus 69 ---~--N~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~ 143 (252)
+ |+|+++|+|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++||||||..+|+++|+||
T Consensus 81 ~~~~~~n~~~~~e~f~~l~~~~~~~l~~-k~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f~pd 159 (532)
T 1ytm_A 81 DEFKNDNKPVTEEAWAQLKALAGKELSN-KPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPD 159 (532)
T ss_dssp SSSCCSCEEECHHHHHHHHHHHHHHHSS-SEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTCCCS
T ss_pred cccCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccCCCC
Confidence 5 8999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCC-CCCCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC---
Q 025479 144 LTVYVTTS-ISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC--- 217 (252)
Q Consensus 144 fTIi~aP~-f~adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni--- 217 (252)
||||++|+ |+++| ..+|++| +++|++|+++|+++||||+ |+|||||++||+|||+||++|+||| |||+
T Consensus 160 ~~i~~~p~~f~~~~-~~~G~~s---~~~v~~n~~~~~~~I~gt~--Y~GemKK~~ftl~n~~~~~~G~L~~H~sanv~~~ 233 (532)
T 1ytm_A 160 FVVLNASKAKVENF-KELGLNS---ETAVVFNLAEKMQIILNTW--YGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLE 233 (532)
T ss_dssp EEEEEETTCCCTTT-TTTTCSS---SCEEEEETTTTEEEEESCC--CTTHHHHHHHHHHHHHTGGGTCEEEEEEEEEETT
T ss_pred EEEEECCccccCCc-ccCCCCC---ceEEEEECCCCEEEEeCCc--cCchhhHhHHHHHHHHHHHCCcEeecCeeeeCCC
Confidence 99999999 99998 4459998 8999999999999999999 7999999999999999999999999 6776
Q ss_pred --Cceeeeecccc
Q 025479 218 --RCNCFFSWCGT 228 (252)
Q Consensus 218 --~~alFFGLSGT 228 (252)
++++|||||||
T Consensus 234 g~~~~~ffGlSGt 246 (532)
T 1ytm_A 234 GKNTAIFFGLSGT 246 (532)
T ss_dssp SCSEEEEECCTTS
T ss_pred CCeEEEEEecCCC
Confidence 48999999997
No 2
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=4e-55 Score=428.14 Aligned_cols=197 Identities=17% Similarity=0.231 Sum_probs=183.3
Q ss_pred hhhhhhCCCCcCcceeecCChHHHHHHHh---------hccccCCceEEEe-------------------eccccC-C--
Q 025479 21 NWALAGRGVVVNDKAFQNLTTSELQQKGA---------TIAESLSGLPVYV-------------------RGNLLG-G-- 69 (252)
Q Consensus 21 n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~---------~~~~~~Gal~v~T-------------------~~~v~~-~-- 69 (252)
...|+.+||++..++|||+++++|+|+|+ +.++++|+++++| ++.||| +
T Consensus 9 ~~~~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg~l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~~ 88 (540)
T 2olr_A 9 PQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKG 88 (540)
T ss_dssp HHHHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSS
T ss_pred ccchhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccceecCCCCEEEcCCCcccCCCCceEEeCCCCCcccccccccc
Confidence 45789999999889999999999999985 4577899999988 124886 3
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCe
Q 025479 70 -----SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPL 144 (252)
Q Consensus 70 -----N~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~f 144 (252)
|+|+++++|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++|||+||..+|+++|+|||
T Consensus 89 ~~~~~N~~~~~e~f~~l~~~~~~~l~~-k~lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~~pd~ 167 (540)
T 2olr_A 89 KGKNDNKPLSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDF 167 (540)
T ss_dssp SSCCSCEEECHHHHHHHHHHHHHHHTT-SCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSE
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHcC-CCEEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCCCCCE
Confidence 7899999999999999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred EEEEc-----CCCCCCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC
Q 025479 145 TVYVT-----TSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC 217 (252)
Q Consensus 145 TIi~a-----P~f~adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni 217 (252)
|||++ |+|+++ |++| +++|++|+++|+++||||+ |+|||||++||+|||+||++|+||| |||+
T Consensus 168 ~i~~~~~~~~p~f~~~-----G~~s---~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~l~~~G~L~mH~sanv 237 (540)
T 2olr_A 168 IVMNGAKCTNPQWKEQ-----GLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKGIASMHCSANV 237 (540)
T ss_dssp EEEEETTCCCTTTTTT-----TCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHTGGGTCEEECEEEEE
T ss_pred EEEEeccCCCCCcccC-----CccC---ccEEEEEccCCeEEEeCCc--CchHhhhhHHHHhHHHHHHCCcEeecceeee
Confidence 99999 999987 9998 7999999999999999999 7999999999999999999999999 6776
Q ss_pred ----Cceeeeecccc
Q 025479 218 ----RCNCFFSWCGT 228 (252)
Q Consensus 218 ----~~alFFGLSGT 228 (252)
++++|||||||
T Consensus 238 g~~g~~~lffGlSGt 252 (540)
T 2olr_A 238 GEKGDVAVFFGLSGT 252 (540)
T ss_dssp CTTSCEEEEECSTTS
T ss_pred CCCCCEEEEEccCCC
Confidence 48999999998
No 3
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=3.2e-55 Score=428.16 Aligned_cols=190 Identities=20% Similarity=0.267 Sum_probs=176.4
Q ss_pred cceeecCChHHHHHHHh----h-ccccCCceEEEe-------------------eccccCC--CCCCCHHHHHHHHHHHH
Q 025479 33 DKAFQNLTTSELQQKGA----T-IAESLSGLPVYV-------------------RGNLLGG--SSDISKAQYAKLLKQVT 86 (252)
Q Consensus 33 ~~v~~Nl~~~~L~E~a~----~-~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~F~~L~~~v~ 86 (252)
.++|||+++++|+|+|+ + .++++|+++++| ++.|||+ |+++++++|+.|+++|.
T Consensus 2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~~n~~~~~e~f~~l~~~~~ 81 (524)
T 1ii2_A 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK 81 (524)
T ss_dssp CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCcCcccCCHHHHHHHHHHHH
Confidence 36899999999999996 5 678899999998 2248876 89999999999999999
Q ss_pred HHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCCcCCC
Q 025479 87 AHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVGLRAQ 165 (252)
Q Consensus 87 ~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f-~p~fTIi~aP~f~adp~~~~Gt~Se 165 (252)
+||++++++||+|+++|+||+||++|||||+.|||+||++|||+||..+|+++| +||||||++|+|+++| ..+|++|
T Consensus 82 ~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~-~~~G~~s- 159 (524)
T 1ii2_A 82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADP-SIPGLTS- 159 (524)
T ss_dssp HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCT-TSTTCCS-
T ss_pred HHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCc-ccCCcCc-
Confidence 999995349999999999999999999999999999999999999998899999 9999999999999998 4559998
Q ss_pred CCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeecccc
Q 025479 166 GDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCGT 228 (252)
Q Consensus 166 ~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSGT 228 (252)
+++|++|+++|+++|+||+ |+|||||++||+|||+||++|+||| |||+ ++++|||||||
T Consensus 160 --~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~~~~~g~L~~H~san~g~~g~~~~ffGlSGt 224 (524)
T 1ii2_A 160 --TTCVALNFKTREQVILGTE--YAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGT 224 (524)
T ss_dssp --SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHHHHTTCEEESEEEEECTTCCEEEEECCTTS
T ss_pred --ccEEEEECCCCeEEEECCc--chHHHHHHHHHHHHHHHHHCCcEeecceeeeCCCCCEEEEEccCCc
Confidence 8999999999999999999 7999999999999999999999999 4776 48999999998
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=7.8e-51 Score=397.55 Aligned_cols=199 Identities=20% Similarity=0.284 Sum_probs=179.7
Q ss_pred hhhhCCCCcCcceeecCChHHHHHHHh----hccccCCceEEEe-------------------eccccCC--CCCCCHHH
Q 025479 23 ALAGRGVVVNDKAFQNLTTSELQQKGA----TIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQ 77 (252)
Q Consensus 23 ~L~~~gi~~~~~v~~Nl~~~~L~E~a~----~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~ 77 (252)
.|+++||++..++|||++.++|+|+|+ +...++|++++.| ++.+||+ |++++++.
T Consensus 3 ~~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g~~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~~n~~~~~e~ 82 (529)
T 1j3b_A 3 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA 82 (529)
T ss_dssp CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHH
T ss_pred chhhccCCCCCeEEECCChHHHHHHHHHcCCCEECCCCCEEeCCCCcccCCCCceEEeCCCCcCCccccccccCcCCHHH
Confidence 578899998889999999999999985 4566899999998 1248875 89999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCC----ccccCCCCCCeEEEEcCCCC
Q 025479 78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTP----SRAVSHDSCPLTVYVTTSIS 153 (252)
Q Consensus 78 F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~----~~el~~f~p~fTIi~aP~f~ 153 (252)
|+.|++++.+||++ +++||+|+++|+|+++++++|+||++|||+||++||||||. .+|+++|+|+|+||++|+|+
T Consensus 83 f~~l~~~~~~~m~g-r~lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~pd~~i~~~p~f~ 161 (529)
T 1j3b_A 83 FEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQ 161 (529)
T ss_dssp HHHHHHHHHHHHHT-SCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCC
T ss_pred HHHHHHHHHHHhcC-CcEEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCCCCEEEEeCCCcc
Confidence 99999999999999 58999999999999999999999999999999999999998 78999999999999999999
Q ss_pred CCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeeccc
Q 025479 154 PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCG 227 (252)
Q Consensus 154 adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSG 227 (252)
++| ..+||+| +++|++|+++|+|+|+||+ |+|||||++|++|||++|++|+||| |||+ ++++||||||
T Consensus 162 ~~~-~~~G~~s---~~~i~~~~~~~~i~i~Gt~--Y~Ge~KK~~l~i~~~~~~~~G~L~~H~sa~~~~~g~~~~ffGlSG 235 (529)
T 1j3b_A 162 AVP-ERDGTRS---EVFVGISFQRRLVLIVGTK--YAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSG 235 (529)
T ss_dssp CCH-HHHCCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHGGGGTCEEEECEEEECTTCCEEEEEECTT
T ss_pred cCc-ccCCCCC---ceEEEEECccCEEEEeCCc--cCcchHHHHHHHHHHHHHHCCeEeccceeeeCCCCcEEEEEcccc
Confidence 997 5559998 7999999999999999999 8999999999999999999999999 5766 3899999999
Q ss_pred c
Q 025479 228 T 228 (252)
Q Consensus 228 T 228 (252)
|
T Consensus 236 t 236 (529)
T 1j3b_A 236 T 236 (529)
T ss_dssp S
T ss_pred C
Confidence 9
No 5
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=38.39 E-value=52 Score=29.40 Aligned_cols=69 Identities=6% Similarity=-0.015 Sum_probs=47.6
Q ss_pred chhhhhhhhCCCCcCcce--eecC--------ChHHHHHHHhhccccCCceEEEe-----eccccCCCCCCCHHHHHHHH
Q 025479 18 YGLNWALAGRGVVVNDKA--FQNL--------TTSELQQKGATIAESLSGLPVYV-----RGNLLGGSSDISKAQYAKLL 82 (252)
Q Consensus 18 y~~n~~L~~~gi~~~~~v--~~Nl--------~~~~L~E~a~~~~~~~Gal~v~T-----~~~v~~~N~pis~e~F~~L~ 82 (252)
-+|-..|+++||++...+ |=.| .+..+++.-...+..+|+|++-| .++-.|.|.|++++-++.+.
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPt~t~~~~dp~~w~~ppvp~~~~~~ir 97 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIR 97 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHHHCTTSEEEEECCCGGGSCGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEeccccccCChhhhcCCCCcHHHHHHHH
Confidence 467788899999875443 2222 34566665456677899999999 22333678899999887777
Q ss_pred HHHH
Q 025479 83 KQVT 86 (252)
Q Consensus 83 ~~v~ 86 (252)
+.+-
T Consensus 98 ~~~p 101 (268)
T 3ijw_A 98 DNVP 101 (268)
T ss_dssp HHSC
T ss_pred hhCC
Confidence 6554
No 6
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=27.37 E-value=36 Score=34.12 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCCCCHHHHH-HHHHHHHHHHcCCCceEEEeeeecCC--cCCcceEEEEcchhhHHHhhhhcCCCCC--ccccC--CCCC
Q 025479 70 SSDISKAQYA-KLLKQVTAHLSSIANVFVQDGAVGSS--SECDAKVRVISDSPSAVLKLSSILWKTP--SRAVS--HDSC 142 (252)
Q Consensus 70 N~pis~e~F~-~L~~~v~~yL~~~~~LfV~D~~aGAd--~~~rl~VRvITe~AwhaLF~~nmfirP~--~~el~--~f~p 142 (252)
|+=++++.+. .|.+++..=+++ +.+||.=-.-|.= |-..+-|. ||+++|-.+=+|-|..--. -+.+. +|.
T Consensus 116 nnwm~p~e~~~~l~~~f~G~M~G-RTMYViPFsMGP~GSp~s~~GVe-iTDS~YVv~smrIMtR~g~~vld~lg~~~Fv- 192 (624)
T 3moe_A 116 GRWMSEEDFEKAFNARFPGCMKG-RTMYVIPFSMGPLGSPLAKIGIE-LTDSPYVVASMRIMTRMGTSVLEALGDGEFI- 192 (624)
T ss_dssp CCEECHHHHHHHHHTTSTTTTTT-SEEEEEEEEESCSSCTTCEEEEE-EESCHHHHHHHHHHSEESHHHHHHHTTCCCE-
T ss_pred cccCCHHHHHHHHHhhCcccccC-CeEEEEeeecCCCCCCccceeEE-ccCcHHHHHhHHHHhhCCHHHHHhhcCCCee-
Confidence 5668998874 445566777788 6899997766653 44444444 8999999998888874321 12222 332
Q ss_pred CeEEEEcCCCCCCCCccC----CcCCCCCCeEEEEeccCCeEEEeccCCCcccc---hhhh----HHHhhcccccCCCce
Q 025479 143 PLTVYVTTSISPGVVNAV----GLRAQGDNGFIAADIERSSLILCGKGFSDANG---VKEA----LAALSGPVIIARGGL 211 (252)
Q Consensus 143 ~fTIi~aP~f~adp~~~~----Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGE---iKKs----IFsvmNylLP~~gVL 211 (252)
.-+|.=+-...+-+.+ =++-+ .+.|+.+-++|.|..=|++ |+|. =||. |.|+|- -++|-|
T Consensus 193 --~clHSvG~pl~~~~~~v~~Wpcnp~--k~~I~h~pe~r~I~S~GSg--YGGNaLLGKKcfALRiAS~~A---r~EGWL 263 (624)
T 3moe_A 193 --KCLHSVGCPLPLKKPLVNNWACNPE--LTLIAHLPDRREIISFGSG--YGGNSLLGKKCFALRIASRLA---KEEGWL 263 (624)
T ss_dssp --EEEEECSCCSSCSSCCBTTBCCCGG--GCEEEEEGGGTEEEEESCC--SHHHHCTCCCCCTTHHHHHHH---HHHTCE
T ss_pred --eeecccCCCCCCCCccCCCCCCCCC--ceEEEEecccCeEEEecCC--cCcchhhhHHHHHHHHHHHHh---hhcccH
Confidence 3444444322221110 02221 3699999999999999999 7898 5665 444443 245555
Q ss_pred ecc
Q 025479 212 LLC 214 (252)
Q Consensus 212 pMs 214 (252)
.=|
T Consensus 264 AEH 266 (624)
T 3moe_A 264 AEH 266 (624)
T ss_dssp EES
T ss_pred HHh
Confidence 544
No 7
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=25.71 E-value=67 Score=25.05 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=26.9
Q ss_pred eEEEEeccCCeEEEeccCCCcccchhhhHHHh
Q 025479 169 GFIAADIERSSLILCGKGFSDANGVKEALAAL 200 (252)
Q Consensus 169 tfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsv 200 (252)
.||+||=++|++-|.=|+ --|.+||+|=.+
T Consensus 67 GFvviN~dKK~mSvsFsd--~~~~~K~~i~ei 96 (111)
T 2jmk_A 67 GFVVVNADKKLMSVSFSD--IDENMKKVIKAT 96 (111)
T ss_dssp EEEEEETTTTEEEEEECS--CCTTHHHHHHHH
T ss_pred EEEEEecCCeEEEEEeeh--hhhhHHHHHHHH
Confidence 699999999999999999 689999998655
No 8
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=24.24 E-value=5.5e+02 Score=25.68 Aligned_cols=138 Identities=9% Similarity=0.063 Sum_probs=89.6
Q ss_pred CCCCCHHHH-HHHHHHHHHHHcCCCceEEEeeeecC--CcCCcceEEEEcchhhHHHhhhhcCCCCC--cccc---CCCC
Q 025479 70 SSDISKAQY-AKLLKQVTAHLSSIANVFVQDGAVGS--SSECDAKVRVISDSPSAVLKLSSILWKTP--SRAV---SHDS 141 (252)
Q Consensus 70 N~pis~e~F-~~L~~~v~~yL~~~~~LfV~D~~aGA--d~~~rl~VRvITe~AwhaLF~~nmfirP~--~~el---~~f~ 141 (252)
|+-++++.+ +.|.+++..=+++ +.+||.=-.-|. +|-..+-|. ||+++|-.+=+|-|..--. -+++ .+|.
T Consensus 101 nnw~~p~e~~~~l~~~f~G~M~G-RTMYViPfsMGP~gsp~s~~GVe-iTDS~YVv~smrIMtR~g~~v~~~lg~~~~Fv 178 (610)
T 2zci_A 101 NNWAPPQAMKDEMSKHYAGSMKG-RTMYVVPFCMGPISDPDPKLGVQ-LTDSEYVVMSMRIMTRMGIEALDKIGANGSFV 178 (610)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTTT-SEEEEEEEEESCTTCSSCEEEEE-EESCHHHHHHHHHHSEESHHHHHHHTTTCCCE
T ss_pred cCccCHHHHHHHHHHhCCcccCC-CEEEEEeeecCCCCCCcccceeE-eeCCHHHHHHHHHHHhcCHHHHHHhCCCCCee
Confidence 678999988 5566777777888 689999766664 455566665 7999999888888874321 1222 3444
Q ss_pred CCeEEEEcCCCCCCCCccC---CcCCCCCCeEEEEeccCCeEEEeccCCCcccc---hhhhH-HHhhcccccCCCceecc
Q 025479 142 CPLTVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGKGFSDANG---VKEAL-AALSGPVIIARGGLLLC 214 (252)
Q Consensus 142 p~fTIi~aP~f~adp~~~~---Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGE---iKKsI-FsvmNylLP~~gVLpMs 214 (252)
+ -+|.=+-...+-+.| =++. +..|+..-+.|.|..-|++ |+|+ =||.. .-+-.++--++|-|.=|
T Consensus 179 ~---~vHSvG~pl~~~~~dv~wPc~~---~~~I~h~pe~r~I~S~GSg--YGGNaLLGKKcfALRiAs~~ar~EGWLAEH 250 (610)
T 2zci_A 179 R---CLHSVGAPLEPGQEDVAWPCND---TKYITQFPETKEIWSYGSG--YGGNAILAKKCYALRIASVMAREEGWMAEH 250 (610)
T ss_dssp E---EEEECSCCCCSSCCCCSSCCCS---SCEEEEETTTTEEEEESCC--SHHHHCTCCCCCTTHHHHHHHHHHTCEEEC
T ss_pred e---eecccCCcCCCCCcCCCCCCCC---ceEEEEecCcCeEEEecCC--cCcchhhhhHHHHHHHHHHHhhhcChHHHH
Confidence 3 444444322221111 1333 6899999999999999999 7898 56643 23333444467877766
Q ss_pred cCC
Q 025479 215 ARC 217 (252)
Q Consensus 215 Ani 217 (252)
.=|
T Consensus 251 MlI 253 (610)
T 2zci_A 251 MLI 253 (610)
T ss_dssp CEE
T ss_pred HHH
Confidence 544
No 9
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=22.43 E-value=87 Score=28.29 Aligned_cols=67 Identities=10% Similarity=-0.064 Sum_probs=46.5
Q ss_pred hhhhhhhhCCCCcCcce--e--------ecCChHHHHHHHhhccccCCceEEEee-----ccccCCCCCCCHHHHHHHHH
Q 025479 19 GLNWALAGRGVVVNDKA--F--------QNLTTSELQQKGATIAESLSGLPVYVR-----GNLLGGSSDISKAQYAKLLK 83 (252)
Q Consensus 19 ~~n~~L~~~gi~~~~~v--~--------~Nl~~~~L~E~a~~~~~~~Gal~v~T~-----~~v~~~N~pis~e~F~~L~~ 83 (252)
+|-..|.++||++...+ | ..-.+..+++.-...+..+|+|++-|- ++--|.|.|++++-++.+.+
T Consensus 26 ~L~~~L~~LGI~~Gd~llVHsSL~~lG~v~Gga~~vi~AL~~~vg~~GTLvmPt~t~~~~d~~~~~~p~vp~~w~~~ir~ 105 (286)
T 3sma_A 26 RLASDLAALGVRPGGVLLVHASLSALGWVCGGAQAVVLALQDAVGKEGTLVMPTFSGDLSDPSTWRRPPVPEDWWPVIRE 105 (286)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSTTSCEETTHHHHHHHHHHHHHCTTCEEEEECCCTTSSCGGGCCSSCCCGGGHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhcCCCEEEEeccCcccCChhhhcCCCCcHHHHHHHHh
Confidence 57788899999875433 2 123456666655567789999999981 22225678999988888776
Q ss_pred HH
Q 025479 84 QV 85 (252)
Q Consensus 84 ~v 85 (252)
.+
T Consensus 106 ~~ 107 (286)
T 3sma_A 106 QM 107 (286)
T ss_dssp HC
T ss_pred hC
Confidence 55
No 10
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=22.13 E-value=1.5e+02 Score=29.61 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=86.3
Q ss_pred CCCCHHHH-HHHHHHHHHHHcCCCceEEEeeeecC--CcCCcceEEEEcchhhHHHhhhhcCCCCC--ccccC-CCCCCe
Q 025479 71 SDISKAQY-AKLLKQVTAHLSSIANVFVQDGAVGS--SSECDAKVRVISDSPSAVLKLSSILWKTP--SRAVS-HDSCPL 144 (252)
Q Consensus 71 ~pis~e~F-~~L~~~v~~yL~~~~~LfV~D~~aGA--d~~~rl~VRvITe~AwhaLF~~nmfirP~--~~el~-~f~p~f 144 (252)
+-++++.+ +.|.+++..=+++ +.+||.=-.-|. +|-..+-|. ||+++|-.+=+|-|..--. -+++. +|.
T Consensus 102 nw~~p~e~~~~l~~~f~G~M~G-RTMYViPFsMGP~gsp~s~~GVe-iTDS~YVv~smriMtR~g~~v~~~lg~~Fv--- 176 (608)
T 2faf_A 102 NWMSPNAFQAAVQERFPGCMAG-RPLYVIPFSMGPPTSPLAKLGVQ-VTDSPYVVLSMRIMTRVGPAVLQRLDDDFV--- 176 (608)
T ss_dssp CEECHHHHHHHHHHHSTTTTTT-SEEEEEEEEESCTTCTTCEEEEE-EESCHHHHHHHHHHSEESHHHHTTCCSCCE---
T ss_pred ccCCHHHHHHHHHHhCCcccCC-CEEEEEeeecCCCCCCcccceeE-eeCCHHHHHHHHHHHhcCHHHHHHhhCccc---
Confidence 67889887 4566677777888 689999766664 355556665 7999999988888874321 12333 333
Q ss_pred EEEEcCCCCC-CCCccC---CcCCCCCCeEEEEeccCCeEEEeccCCCcccc---hhhhH-HHhhcccccCCCceecccC
Q 025479 145 TVYVTTSISP-GVVNAV---GLRAQGDNGFIAADIERSSLILCGKGFSDANG---VKEAL-AALSGPVIIARGGLLLCAR 216 (252)
Q Consensus 145 TIi~aP~f~a-dp~~~~---Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGE---iKKsI-FsvmNylLP~~gVLpMsAn 216 (252)
.-+|.=+-.. .+.+.| =++-+ ...|+..-+.|.|..-|++ |+|+ =||.. .-+-.++--++|-|.=|.=
T Consensus 177 ~~vHSvG~pl~~~~~~~~~WPcn~~--~~~I~h~pe~r~I~S~GSg--YGGNaLLGKKcfALRiAs~~ar~EGWLAEHMl 252 (608)
T 2faf_A 177 RCLHSVGRPLPLTEPLVSSWPCDPS--RVLVAHIPSERRIVSFGSG--YGGNSLLGKKCFALRIASRMAQQQGWLAEHML 252 (608)
T ss_dssp EEEEECSCCSSCSSCCSTTCCCCGG--GCEEEEEGGGTEEEEESCC--SHHHHCTCCCCCTTHHHHHHHHHHTCEEESCE
T ss_pred eeecccCCcCCcccccCCCCccCCC--ccEEEEECCCCeEEEecCC--cCcchhhhhHHHHHHHHHHHhhhcChHHHHHH
Confidence 3444444221 110000 12221 3799999999999999999 7898 56643 2333333336777776654
Q ss_pred C
Q 025479 217 C 217 (252)
Q Consensus 217 i 217 (252)
|
T Consensus 253 I 253 (608)
T 2faf_A 253 I 253 (608)
T ss_dssp E
T ss_pred H
Confidence 4
Done!