BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025480
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54UB1|TRM6_DICDI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1
Length = 521
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 131/213 (61%), Gaps = 3/213 (1%)
Query: 19 EGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
EG V+LDIN+G++ ++ GS +KIG K + +IG + S FQV N K L R
Sbjct: 37 EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLER 94
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ DD + +++ DNR + +N AQ L+ EDI+EM+++G I++ ++
Sbjct: 95 ITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVE 153
Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS +F+ KTSFSQ KY KK KKY+ V + +P +S+ EAY+KK+ +I LR D
Sbjct: 154 NSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQ 213
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
LL++GN+ ANS VLVV+ GL+TG++AER+ G
Sbjct: 214 LLTLGNIRANSQVLVVETCMGLVTGSIAERMNG 246
>sp|Q2T9V5|TRM6_BOVIN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1
Length = 497
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 118/215 (54%), Gaps = 19/215 (8%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLS 77
I DGD +V R +++ + L +IG +G+ F+V NG P
Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNIIGHSYGTTFEVTNGGSLQPKKK 79
Query: 78 RVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALI 137
+ P++E KE DNR I+DD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 80 KEEPTSET----KEAGT------DNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLI 129
Query: 138 ANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLS 197
NS TF KT F+Q+KY KK+KKY + + +P R + Y+ + P +I +R D L+
Sbjct: 130 ENSTTFRDKTEFAQDKYIKKKKKKYEAMITVVKPSTRILSVMYYAREPGKINHMRYDTLA 189
Query: 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGL 232
+L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 190 QMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGF 224
>sp|Q9UJA5|TRM6_HUMAN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1
Length = 497
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLS 77
I DGD +V R +++ + L +IG +G+ F+V +G P
Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHSYGTAFEVTSGGSLQPKKK 79
Query: 78 RVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALI 137
R P+ E KE DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 80 REEPTAET----KEAGT------DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLI 129
Query: 138 ANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLS 197
NS TF KT F+Q+KY KK+KKY + + +P R + Y+ + P +I +R D L+
Sbjct: 130 ENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLA 189
Query: 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGL 232
+L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 190 QMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGF 224
>sp|Q8CE96|TRM6_MOUSE tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1
Length = 497
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 17/214 (7%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
I+DGD +V R +++ + L IG +GS F V +G +
Sbjct: 21 IHDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNAIGHSYGSAFDVSSG----GSLQ 76
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ E+ E ++A DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 77 LRKKLEEPASETKEAGT-----DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIE 131
Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS TF KT F+Q+KY KK+KKY V + +P R + Y+ + P +I +R D L+
Sbjct: 132 NSTTFRDKTEFAQDKYIKKKKKKYEAIVTILKPSTRILSIMYYAREPGKINHMRYDTLAQ 191
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGL 232
+L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 192 MLTLGNIRAGNKMIVMETCSGLVLGAMMERMGGF 225
>sp|Q6CF35|TRM6_YARLI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TRM6 PE=3 SV=1
Length = 487
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 112/205 (54%), Gaps = 20/205 (9%)
Query: 37 RLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDD---VQEKED 92
+L T+ IG + + ++G P+G F++ K R+I DD V +
Sbjct: 56 KLIPNQTISIGKFGSFQVNDILGLPYGYTFEIQEDKR----LRIIQEGVDDHDYVVGAKG 111
Query: 93 AQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGA-TGEEIVEALIANSATFEKKTSFSQ 151
A + E N+ ++D +++Q LS +I+EM++Q +G++I++ +I F KKT+FS+
Sbjct: 112 ALLEPE-ETNQTLIDTSESQTLSMAEIEEMKKQKTLSGKDIIDHVIKGHNEFHKKTAFSK 170
Query: 152 EKYKLKKQKKYAPKVLLRRPFARSICEA-----YFKKNPARIGFLRVDMLSLLLSMGNVA 206
EKY +K++KY LRR + +C + Y +K+ ++ + +ML+LLLSM NV
Sbjct: 171 EKYLRRKEQKY-----LRRFTPQPMCSSLLLDFYLEKDYKKVLDMSQEMLALLLSMANVR 225
Query: 207 ANSDVLVVDMAGGLLTGAVAERLGG 231
LVVD G+LT A+ ER+ G
Sbjct: 226 PGGKYLVVDETTGVLTAALMERMAG 250
>sp|P0CS06|TRM6_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) GN=TRM6 PE=3 SV=1
Length = 560
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 DAQISGEFRDNRAIVD--DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSF 149
DA I N I D + + LS ++I E+R QG T EEI++A IA F KT F
Sbjct: 188 DAVIDDIVETNEFIEDLSETEKTTLSHDEIAELRAQGCTPEEIIQAQIARHEKFGLKTDF 247
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN---PARIGFLRVDMLSLLLSMGNVA 206
S+EK++ +K+KK+ V +P A SI + N P I LR D LS LL+M NV
Sbjct: 248 SKEKWRRRKEKKFYQTV---QPLAPSIPNVLYHYNLRSPQSILHLRDDTLSQLLTMANVR 304
Query: 207 ANSDVLVVDMAGGLLTGAVAERLG 230
LVVD GGL+T AV ER+G
Sbjct: 305 PGGRYLVVDDTGGLITAAVLERMG 328
>sp|P0CS07|TRM6_CRYNB tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) GN=TRM6 PE=3 SV=1
Length = 560
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 92 DAQISGEFRDNRAIVD--DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSF 149
DA I N I D + + LS ++I E+R QG T EEI++A IA F KT F
Sbjct: 188 DAVIDDIVETNEFIEDLSETEKTTLSHDEIAELRAQGCTPEEIIQAQIARHEKFGLKTDF 247
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN---PARIGFLRVDMLSLLLSMGNVA 206
S+EK++ +K+KK+ V +P A SI + N P I LR D LS LL+M NV
Sbjct: 248 SKEKWRRRKEKKFYQTV---QPLAPSIPNVLYHYNLRSPQSILHLRDDTLSQLLTMANVR 304
Query: 207 ANSDVLVVDMAGGLLTGAVAERLG 230
LVVD GGL+T AV ER+G
Sbjct: 305 PGGRYLVVDDTGGLITAAVLERMG 328
>sp|Q9HGL4|TRM6_SCHPO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=gcd10 PE=3 SV=1
Length = 462
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 17/226 (7%)
Query: 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSL-QPLIGCPFGSLFQVDN 69
+R+A E SV + + D + F L +T+ +G L L G F F++
Sbjct: 2 LRHASTISENSSVFIKL-PSDNVRFVTLKPNNTIHLGKFGSFLADDLFGKHFDETFEIYQ 60
Query: 70 GKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQ---- 125
P RV+ + +E I E + N+ + D Q ++ E+IDE+R
Sbjct: 61 ----PKKIRVLKT-------REVQYIEEEKKTNQELNDCRGNQLMTQEEIDELRANIKAG 109
Query: 126 GATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNP 185
G EE ++ L +S TFE+KT F+QEKY +K +KY + + RP + + +P
Sbjct: 110 GLRAEEAIKQLTNSSKTFEQKTLFAQEKYVTRKGEKYLQRFQVLRPCVEVVANYMIEHDP 169
Query: 186 ARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
+I L + +SL+L++GNV LVVD G + G++ +R+ G
Sbjct: 170 YKILDLTAECISLMLTLGNVKPGGRYLVVDETGCMFLGSLIDRVAG 215
>sp|Q5A6Q4|TRM6_CANAL tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=TRM6 PE=3 SV=1
Length = 453
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 109/183 (59%), Gaps = 9/183 (4%)
Query: 56 LIGCPFGSLFQV-DNGKEGP--NLSRV-IPSTEDDVQEKEDAQI-SGEFRDNRAIVD-DN 109
++G P G+ F++ ++ K P ++S + + +++ VQ +E ++ S +N+ I++ +
Sbjct: 50 ILGYPLGTSFEIIEDHKVKPIKSISTLDLTDSDETVQRQELTKMFSDSAENNQNIINIGS 109
Query: 110 KAQCLSGEDIDEMRRQGAT---GEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKV 166
K Q LS +DIDE+++ GA+ G+ I+E +IA F+KKT FSQ+KY +KQ+K+ +
Sbjct: 110 KIQKLSKDDIDELKKSGASSNVGQMIIEKMIAGHEGFDKKTIFSQQKYLKRKQQKFLRRF 169
Query: 167 LLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVA 226
+ + + Y +K+ R+ L V+ L L+L+ NV L++D GG+LT A+
Sbjct: 170 TVDYLGGSELLQYYIEKDLNRVLDLSVETLGLMLTYSNVRPGGKYLIIDETGGVLTYAMM 229
Query: 227 ERL 229
ER+
Sbjct: 230 ERM 232
>sp|Q2UJ66|TRM6_ASPOR tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=trm6 PE=3 SV=1
Length = 578
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 33/208 (15%)
Query: 56 LIGCPFGSLFQV---DNGKEGPNLSRVIPSTE-----------DDVQEKEDAQISGEFRD 101
+IG PF F++ + K+G L R+IP+ E D +E + + R
Sbjct: 44 IIGRPFYLTFEILDDADEKDGSCL-RIIPAAELHAETLIAEGEGDGEELDTNEDGTPMRT 102
Query: 102 NRAIVDDNKAQCLSGEDIDEMRRQ-GATGEEIVEALIANSATFEKKTSFSQEKYKLKKQK 160
NR IVDD Q L+ E+I+ ++++ G G EI+ L+ + T ++KTSFS KY L+K++
Sbjct: 103 NREIVDDASTQKLTWEEIEALKKESGGAGREIISKLLESHQTLDQKTSFSLAKYMLRKRR 162
Query: 161 KYAPKVLLRRPFARSICEAYFKKN--PARIGFLRVDMLSLLLSMGNVAANSDV------- 211
KY + + P SI + ++ ARI LR +M+ LL GNV D
Sbjct: 163 KYMKRFTV-LPLDVSILTNHMMEDQGAARIMELRDEMVGLLGCWGNVHHGGDASLDEAIA 221
Query: 212 -------LVVDMAGGLLTGAVAERLGGL 232
LVVD GGL+ A+AER+G L
Sbjct: 222 AKPNGRYLVVDDTGGLVVAAMAERMGIL 249
>sp|Q6BKK7|TRM6_DEBHA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM6 PE=3 SV=2
Length = 473
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 56 LIGCPFGSLFQV-DNGKEGPNLSRVIPSTEDDV-QEKED-------AQISGEFRDNRAIV 106
++G PFG F++ + K P S + + E V E E+ +S +N+ I+
Sbjct: 69 ILGYPFGQTFEILEELKVKPIKSMTMQADETSVDNENEELTKDDLTKMLSNSSDNNQNII 128
Query: 107 D-DNKAQCLSGEDIDEMRRQGAT---GEEIVEALIANSATFEKKTSFSQEKYKLKKQKKY 162
+ +K Q L+ ED+D+++ GAT G+ I+E +IA F+KKT FSQ+KY +KQ+K+
Sbjct: 129 NIGSKIQKLTSEDVDKLKESGATSDIGQRIIEQMIAGHEGFDKKTLFSQQKYLKRKQQKF 188
Query: 163 APKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLT 222
+ + + + + Y +K+ R+ + + L LLL+ NV L++D GG++
Sbjct: 189 LRRFTVEYLGSSQLLQYYIEKDTQRVLDMSEETLGLLLNYANVRPGGKYLLIDETGGIIL 248
Query: 223 GAVAERLGG 231
A+ ER+ G
Sbjct: 249 YAMMERMNG 257
>sp|Q4WE58|TRM6_ASPFU tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=trm6 PE=3 SV=1
Length = 572
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query: 56 LIGCPFGSLFQVDN--GKEGPNLSRVIPSTE--------DDVQEKEDAQISGE---FRDN 102
+IG PF F++ + G+ N R++P E D E +D +++ E R N
Sbjct: 44 IIGRPFYLTFEIIDVSGENNDNCLRIVPPAELHAETLIADGEGEGDDVEVNEEGIPIRTN 103
Query: 103 RAIVDDNKAQCLSGEDIDEMRR-QGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKK 161
R IVDD Q ++ E+I+ +++ G EI+E L+ + + ++KT+FS KY L+K+KK
Sbjct: 104 REIVDDASTQKMTAEEIEALKKVSTGAGREIIEKLLESHSALDQKTAFSLAKYTLRKRKK 163
Query: 162 YAPKVLLRRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVA------------- 206
+ + + P S+ Y K + LR + + L+ GNV
Sbjct: 164 FLKRFTV-LPVDVSLLTNYMLEGKEAMKTMELRDESIGLIGCWGNVHHGGQSSFEGAVAS 222
Query: 207 -ANSDVLVVDMAGGLLTGAVAERLGGL 232
N LV+D GGL+ A+AER+G L
Sbjct: 223 KPNGRYLVIDETGGLVVAAMAERMGIL 249
>sp|Q75B32|TRM6_ASHGO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51
/ FGSC 9923 / NRRL Y-1056) GN=TRM6 PE=3 SV=1
Length = 459
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 26/256 (10%)
Query: 8 LDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQ 66
+DP+R L +L+ + D L L + +G C + +IG P G+ F+
Sbjct: 1 MDPLRQLVLNQH---ILVRL-PSDNLKIVELKPNGVISLGKFGACHVNDIIGYPLGTTFE 56
Query: 67 V---DNGKEGPNLSRVIPSTEDDVQEKEDAQISGE--------------FRDNRAIVD-D 108
+ + E S V+ ++ + +AQ+ E + N ++D
Sbjct: 57 IWYEGDETEVVRGSTVVIGKVRVLENRAEAQVGSEGATPQPAELTQVESSKTNMELLDLG 116
Query: 109 NKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLL 168
+K Q L ++I+ M++ G+ I+ +I + TF KKT SQEKY +K++K+A K
Sbjct: 117 HKVQKLDHKEIERMKQDVTAGDSIISMMIQSHETFHKKTIHSQEKYLKRKKQKFA-KFFT 175
Query: 169 RRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVA 226
S Y K + RI L + L + L++ N+ +N L +D GGL+ A+
Sbjct: 176 AEYLGSSGLLRYLIEKGDMQRIMDLSEESLGMALNLANIRSNGTYLCMDETGGLIVYAML 235
Query: 227 ERLGGLEDYYFLGSFV 242
ER+ G + G+ V
Sbjct: 236 ERMFGGHEAQHGGTIV 251
>sp|Q6FNP9|TRM6_CANGA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TRM6 PE=3 SV=1
Length = 473
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 131/275 (47%), Gaps = 42/275 (15%)
Query: 8 LDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNC-SLQPLIGCPFGSLFQ 66
+DP+++ + V+L + G+ + L S++ +G + ++G P G+ F+
Sbjct: 1 MDPLKS---IVQDQHVILTLPSGNSKI-VELKPDSSVSLGKFGAFQVNDILGWPLGTTFE 56
Query: 67 ---------VDNGKEGPNLSRV--IP----------STEDDVQEK-----EDAQISGEFR 100
V+N K+ P + + +P +T+D +E+ A I E +
Sbjct: 57 IYYDNVEEIVENKKKKPKSNELNKVPVGKVRLYKEVATDDKAEEEVEEMDSSAVIPVELQ 116
Query: 101 D------NRAIVD-DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEK 153
+ N+ +++ N Q L+ D++ ++Q A+ EI+ +I + +F +KT +SQEK
Sbjct: 117 NVLSSATNQGLINIGNDVQKLTMHDVERFKQQSASANEIITKMIESHGSFHQKTIYSQEK 176
Query: 154 YKLKKQKKYAPKVLLRRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVAANSDV 211
Y +K++K+A K + S+ + K + R+ L + L ++L++ N+ ++
Sbjct: 177 YLKRKKQKFA-KFFTVDYLSSSMLLKFLVEKGDIQRVLDLSEESLGMILNLTNIRSDGTY 235
Query: 212 LVVDMAGGLLTGAVAERL-GGLEDYYFLGSFVSSN 245
L +D GGL+ + ER+ GG ED G V N
Sbjct: 236 LCMDETGGLIVYTMLERMFGGKEDLDAPGKIVVIN 270
>sp|P41814|TRM6_YEAST tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GCD10 PE=1 SV=1
Length = 478
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 109 NKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLL 168
+KAQ L+ E+I++M+++ + +EI++ +I + +F KT +SQEKY +K++K+A +
Sbjct: 134 SKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTV 193
Query: 169 RRPFARSICEAYFKK-NPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAE 227
+ ++ + K + R+ + + + +LL++ N+ + + L +D GGLL + E
Sbjct: 194 EYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLE 253
Query: 228 RLGG 231
R+ G
Sbjct: 254 RMFG 257
>sp|Q6CLF6|TRM6_KLULA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=TRM6 PE=3 SV=1
Length = 476
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 101 DNRAIVD-DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQ 159
+NR +++ + Q +S +I+ M+R+ A+G+ I+ +I + +F +KT SQEKY +K+
Sbjct: 103 NNRGLINLGSVVQEMSMAEIEAMKREAASGDAIISKMIESHKSFHQKTVHSQEKYLKRKK 162
Query: 160 KKYAPKVLLRRPFARSICEAYFKKNPA-RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAG 218
+K+A + + + +K R+ + + L + L++ N+ +N L +D G
Sbjct: 163 QKFAKFFTVEYLDSSGLLHYLIEKGDVLRVMDISQESLGMALNLANINSNGQYLCIDETG 222
Query: 219 GLLTGAVAERL 229
GL+ A+ ER+
Sbjct: 223 GLIVYAMLERM 233
>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGLEDYYFLGS 240
+ +L V++L++LLS+ V N+D+ VD+ G+++G +A L G YY + +
Sbjct: 180 LAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVGMISGVIAGLLFGNTGYYVVLA 239
Query: 241 FVSSNIILII 250
+ +I+ +
Sbjct: 240 WCCISIVFFM 249
>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGLEDYYFLGS 240
+ +L V++L++LLS+ V N+D+ VD+ G+++G ++ L G YY + S
Sbjct: 180 LAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVGMISGVISGLLFGKTGYYVVLS 239
Query: 241 FVSSNIILII 250
+ +++ +
Sbjct: 240 WCGISVVFFM 249
>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGLEDYYFLGS 240
+ +L V++L++LLS+ V N+D+ VD+ G+++G ++ L G YY + +
Sbjct: 180 LAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFTGYKYVGMISGVISGLLFGKTGYYIVLA 239
Query: 241 FVSSNIILII 250
+ +I+ +
Sbjct: 240 WCCISIVFFM 249
>sp|Q8IS41|CO16B_CONVX Conotoxin VxVIB OS=Conus vexillum PE=1 SV=1
Length = 88
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 83 TEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRR 124
+ D++Q+ ED ++ E D+ D N C SGE IDE R
Sbjct: 37 SSDEMQDSEDLTLTKECTDDSQFCDPNDHDCCSGECIDEGGR 78
>sp|P39793|PBPA_BACSU Penicillin-binding protein 1A/1B OS=Bacillus subtilis (strain 168)
GN=ponA PE=1 SV=1
Length = 914
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 13 NAQLTWEGCSVLLDIN-DGDRL--VFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQV-- 67
N + + S+ L N DGD V + GS +I N + + G GS+++
Sbjct: 713 NVKYDKDNQSLTLSWNYDGDATFAVKQSVDGGSYSEIQNSSAKEAVISGVQPGSVYKFEV 772
Query: 68 ----DNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNK 110
D+GK + S +P EDD +K+ Q E +D+ DD +
Sbjct: 773 TAVSDDGKSTASTSYEVPKAEDDEDKKDQQQTDDEKQDDEKTQDDTQ 819
>sp|E9E2J4|AMPP2_METAQ Probable Xaa-Pro aminopeptidase MAC_04092 OS=Metarhizium acridum
(strain CQMa 102) GN=MAC_04092 PE=3 SV=1
Length = 509
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVD 215
F R E YF+ +PA F+ D+L +G V +LV +
Sbjct: 442 FCREYLEGYFRSDPAHADFIDWDLLEEYYDVGGVRIEDCILVTE 485
>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2
Length = 304
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGLEDYYF-LGSF 241
+L +++L++LLS+ V N+D+ +D+ G++ G VA L G YY L F
Sbjct: 186 WLIIEVLAVLLSLYLVTVNTDLTTIDLVAFSGYKYVGMIVGVVAGLLFGRTGYYLALLWF 245
Query: 242 VSSNIILII 250
+S + I
Sbjct: 246 CASIFVFTI 254
>sp|E3Q897|AMPP2_COLGM Probable Xaa-Pro aminopeptidase GLRG_02280 OS=Colletotrichum
graminicola (strain M1.001 / M2 / FGSC 10212)
GN=GLRG_02280 PE=3 SV=1
Length = 526
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVD 215
F R E YF NP F+ +L +G V D+LV D
Sbjct: 459 FCREYIEGYFLSNPRHARFINKTVLERYYRVGGVRIEDDILVTD 502
>sp|E9F9J8|AMPP2_METAR Probable Xaa-Pro aminopeptidase MAA_08947 OS=Metarhizium anisopliae
(strain ARSEF 23 / ATCC MYA-3075) GN=MAA_08947 PE=3 SV=1
Length = 493
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVD 215
F R E YF+ +PA F+ D+L +G V +LV +
Sbjct: 426 FCREYLEGYFRSDPAHADFIDWDLLEEYYDVGGVRIEDCILVTE 469
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,002,001
Number of Sequences: 539616
Number of extensions: 3902340
Number of successful extensions: 10997
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10958
Number of HSP's gapped (non-prelim): 31
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)