Query 025480
Match_columns 252
No_of_seqs 113 out of 295
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04189 Gcd10p: Gcd10p family 100.0 3.9E-79 8.5E-84 561.6 22.3 235 14-249 1-245 (299)
2 KOG1416 tRNA(1-methyladenosine 100.0 2.9E-63 6.3E-68 469.0 18.0 225 15-243 16-246 (475)
3 COG2519 GCD14 tRNA(1-methylade 99.7 5.5E-16 1.2E-20 139.8 12.6 119 16-239 1-127 (256)
4 KOG2915 tRNA(1-methyladenosine 99.4 5.3E-12 1.2E-16 115.3 11.4 118 15-237 11-136 (314)
5 PF08704 GCD14: tRNA methyltra 98.7 2.5E-08 5.3E-13 90.4 5.8 71 165-239 2-73 (247)
6 PF14801 GCD14_N: tRNA methylt 98.2 3.2E-06 6.9E-11 59.6 4.7 50 15-65 4-53 (54)
7 PF01135 PCMT: Protein-L-isoas 96.9 0.003 6.6E-08 55.8 6.8 91 118-235 5-100 (209)
8 KOG1661 Protein-L-isoaspartate 95.4 0.02 4.3E-07 51.4 4.2 54 182-235 51-110 (237)
9 TIGR00080 pimt protein-L-isoas 94.5 0.18 3.9E-06 43.9 7.8 93 116-235 8-105 (215)
10 PRK13942 protein-L-isoaspartat 93.9 0.16 3.4E-06 44.4 6.3 45 191-235 60-104 (212)
11 COG2518 Pcm Protein-L-isoaspar 93.1 0.16 3.4E-06 45.4 4.9 89 119-230 7-95 (209)
12 PRK04266 fibrillarin; Provisio 93.0 0.21 4.6E-06 44.5 5.6 43 192-235 54-99 (226)
13 PRK13944 protein-L-isoaspartat 92.7 0.27 5.8E-06 42.7 5.8 43 193-235 58-100 (205)
14 PRK00312 pcm protein-L-isoaspa 92.5 0.52 1.1E-05 40.7 7.3 39 190-228 61-99 (212)
15 PRK13943 protein-L-isoaspartat 91.2 0.52 1.1E-05 44.4 6.2 44 192-235 65-108 (322)
16 TIGR01848 PHA_reg_PhaR polyhyd 88.0 1.4 3.1E-05 35.4 5.5 65 101-204 7-79 (107)
17 PRK00377 cbiT cobalt-precorrin 87.2 1.9 4.1E-05 36.9 6.3 43 193-235 26-68 (198)
18 TIGR00438 rrmJ cell division p 87.0 1.7 3.6E-05 36.9 5.8 42 194-235 19-60 (188)
19 PLN02476 O-methyltransferase 85.5 2 4.4E-05 39.8 6.0 59 182-240 93-152 (278)
20 KOG1712 Adenine phosphoribosyl 83.0 1.2 2.6E-05 38.6 3.1 33 200-232 114-151 (183)
21 TIGR02469 CbiT precorrin-6Y C5 82.5 3.9 8.4E-05 31.1 5.6 39 196-235 8-46 (124)
22 PF07879 PHB_acc_N: PHB/PHA ac 81.9 1.3 2.9E-05 32.4 2.5 37 101-137 7-51 (64)
23 TIGR02752 MenG_heptapren 2-hep 81.1 3.1 6.8E-05 36.0 5.1 40 196-235 34-73 (231)
24 TIGR00446 nop2p NOL1/NOP2/sun 79.5 4.2 9E-05 36.8 5.5 42 194-235 57-99 (264)
25 PRK14903 16S rRNA methyltransf 78.8 3.7 8.1E-05 40.0 5.3 43 193-235 222-265 (431)
26 PRK14901 16S rRNA methyltransf 78.5 4.3 9.4E-05 39.4 5.7 43 193-235 237-280 (434)
27 PRK00274 ksgA 16S ribosomal RN 78.5 5.6 0.00012 36.1 6.0 36 194-229 29-64 (272)
28 PLN02781 Probable caffeoyl-CoA 77.5 4.9 0.00011 35.8 5.3 51 190-240 51-102 (234)
29 PRK11873 arsM arsenite S-adeno 76.1 4.5 9.7E-05 36.2 4.7 36 200-235 70-105 (272)
30 PRK08317 hypothetical protein; 74.2 7.1 0.00015 33.1 5.2 39 197-235 9-47 (241)
31 PRK07402 precorrin-6B methylas 73.1 8.8 0.00019 32.6 5.6 42 193-235 26-67 (196)
32 PRK08287 cobalt-precorrin-6Y C 72.1 12 0.00027 31.4 6.2 42 193-235 17-58 (187)
33 smart00105 ArfGap Putative GTP 71.9 3.6 7.7E-05 32.7 2.6 47 112-158 49-103 (112)
34 PTZ00146 fibrillarin; Provisio 71.7 5.4 0.00012 37.4 4.2 34 202-235 127-160 (293)
35 PRK10901 16S rRNA methyltransf 70.9 9 0.00019 37.1 5.7 41 194-235 230-271 (427)
36 TIGR00138 gidB 16S rRNA methyl 70.8 13 0.00028 31.8 6.0 31 203-235 39-69 (181)
37 KOG0024 Sorbitol dehydrogenase 70.1 4.2 9.1E-05 38.9 3.1 34 200-233 162-196 (354)
38 PLN02233 ubiquinone biosynthes 69.3 9.2 0.0002 34.5 5.1 37 199-235 65-101 (261)
39 KOG0820 Ribosomal RNA adenine 68.9 9 0.0002 36.0 4.9 36 193-228 44-79 (315)
40 PRK11188 rrmJ 23S rRNA methylt 68.8 12 0.00027 32.6 5.6 39 197-235 40-79 (209)
41 PRK14103 trans-aconitate 2-met 68.3 10 0.00022 33.6 5.1 47 188-235 10-56 (255)
42 PF02353 CMAS: Mycolic acid cy 67.5 7.7 0.00017 35.6 4.2 36 196-231 51-86 (273)
43 TIGR00755 ksgA dimethyladenosi 66.5 12 0.00025 33.4 5.1 37 193-229 15-51 (253)
44 PLN02589 caffeoyl-CoA O-methyl 66.2 15 0.00032 33.4 5.7 53 188-240 60-113 (247)
45 PRK14902 16S rRNA methyltransf 65.1 12 0.00026 36.4 5.2 40 196-235 238-278 (444)
46 PRK00107 gidB 16S rRNA methylt 65.1 31 0.00068 29.8 7.3 51 170-235 22-72 (187)
47 PF01209 Ubie_methyltran: ubiE 63.9 6.4 0.00014 35.2 2.9 37 199-235 39-75 (233)
48 PRK11933 yebU rRNA (cytosine-C 63.1 10 0.00022 37.7 4.3 41 196-236 99-142 (470)
49 COG2242 CobL Precorrin-6B meth 61.5 17 0.00037 32.0 5.0 41 194-235 21-61 (187)
50 smart00650 rADc Ribosomal RNA 60.8 15 0.00032 30.5 4.4 32 197-228 3-34 (169)
51 PRK10144 formate-dependent nit 60.4 12 0.00026 30.9 3.7 51 98-171 44-96 (126)
52 PRK14896 ksgA 16S ribosomal RN 59.8 19 0.00041 32.4 5.2 35 194-228 16-50 (258)
53 cd01445 TST_Repeats Thiosulfat 58.8 33 0.00071 28.0 6.1 48 193-241 80-133 (138)
54 TIGR03147 cyt_nit_nrfF cytochr 58.6 13 0.00029 30.7 3.6 52 98-171 44-96 (126)
55 TIGR00563 rsmB ribosomal RNA s 57.6 21 0.00046 34.5 5.5 40 195-235 225-265 (426)
56 TIGR00537 hemK_rel_arch HemK-r 57.2 11 0.00024 31.4 3.1 36 192-228 5-40 (179)
57 COG3088 CcmH Uncharacterized p 57.2 15 0.00033 31.3 3.8 59 98-178 48-108 (153)
58 PRK11705 cyclopropane fatty ac 57.1 17 0.00036 34.9 4.6 36 196-231 156-191 (383)
59 COG4798 Predicted methyltransf 56.3 9 0.00019 34.5 2.4 42 197-238 38-80 (238)
60 PRK14904 16S rRNA methyltransf 56.0 21 0.00046 34.7 5.2 40 196-235 239-278 (445)
61 PRK14967 putative methyltransf 55.8 21 0.00046 31.0 4.7 39 195-235 24-62 (223)
62 PTZ00338 dimethyladenosine tra 54.9 21 0.00046 33.1 4.8 36 193-228 22-57 (294)
63 TIGR02227 sigpep_I_bact signal 54.9 15 0.00033 30.8 3.5 60 8-71 25-88 (163)
64 COG0030 KsgA Dimethyladenosine 53.3 23 0.00051 32.6 4.7 36 195-230 18-53 (259)
65 COG4122 Predicted O-methyltran 52.0 26 0.00057 31.4 4.7 43 193-235 45-87 (219)
66 PF01596 Methyltransf_3: O-met 51.5 20 0.00044 31.5 3.9 52 188-239 26-78 (205)
67 COG2226 UbiE Methylase involve 51.4 26 0.00056 31.8 4.6 34 201-235 45-78 (238)
68 PF08004 DUF1699: Protein of u 49.8 18 0.00039 30.1 3.0 22 116-137 94-115 (131)
69 COG0503 Apt Adenine/guanine ph 49.7 21 0.00047 30.6 3.7 28 204-231 112-144 (179)
70 cd04466 S1_YloQ_GTPase S1_YloQ 48.8 37 0.0008 23.6 4.3 28 16-43 37-64 (68)
71 PTZ00098 phosphoethanolamine N 47.9 36 0.00077 30.7 5.0 37 194-230 39-75 (263)
72 PRK01683 trans-aconitate 2-met 47.2 30 0.00064 30.5 4.3 41 194-235 18-58 (258)
73 PF01269 Fibrillarin: Fibrilla 46.4 46 0.00099 30.3 5.4 32 204-235 70-101 (229)
74 PF00398 RrnaAD: Ribosomal RNA 46.2 35 0.00076 30.7 4.7 36 194-229 17-52 (262)
75 TIGR01934 MenG_MenH_UbiE ubiqu 46.1 56 0.0012 27.4 5.7 40 196-235 28-67 (223)
76 PF12847 Methyltransf_18: Meth 45.4 29 0.00063 25.9 3.5 21 207-227 1-21 (112)
77 PLN02244 tocopherol O-methyltr 45.2 42 0.00092 31.4 5.2 38 194-231 100-142 (340)
78 PF12990 DUF3874: Domain of un 44.0 47 0.001 24.8 4.3 37 170-206 25-61 (73)
79 PRK00216 ubiE ubiquinone/menaq 43.1 85 0.0019 26.6 6.4 42 194-235 38-79 (239)
80 PRK14968 putative methyltransf 41.5 41 0.00089 27.5 4.1 30 199-228 15-44 (188)
81 PF04079 DUF387: Putative tran 40.4 18 0.00039 30.8 1.8 26 111-138 94-119 (159)
82 PRK15451 tRNA cmo(5)U34 methyl 39.0 72 0.0016 28.2 5.5 31 205-235 54-85 (247)
83 PF04814 HNF-1_N: Hepatocyte n 36.6 22 0.00049 31.1 1.8 25 113-137 4-31 (180)
84 KOG3967 Uncharacterized conser 36.2 1.4E+02 0.003 27.6 6.8 86 151-242 133-226 (297)
85 PRK15219 carbonic anhydrase; P 35.4 1.1E+02 0.0023 27.9 6.1 97 125-225 49-160 (245)
86 COG4628 Uncharacterized conser 35.0 44 0.00095 27.5 3.1 59 126-185 17-105 (136)
87 COG2897 SseA Rhodanese-related 34.1 91 0.002 29.1 5.5 52 187-239 69-124 (285)
88 TIGR03113 exosortase_2 exosort 32.6 50 0.0011 30.5 3.5 29 193-221 141-179 (268)
89 PF02796 HTH_7: Helix-turn-hel 32.4 59 0.0013 21.4 2.9 21 116-136 11-31 (45)
90 PLN02723 3-mercaptopyruvate su 32.2 1.2E+02 0.0025 28.3 5.9 47 192-239 87-137 (320)
91 cd03378 beta_CA_cladeC Carboni 31.6 1.4E+02 0.003 25.2 5.8 90 130-224 2-108 (154)
92 COG0144 Sun tRNA and rRNA cyto 31.5 88 0.0019 29.7 5.1 49 192-240 140-189 (355)
93 PRK11493 sseA 3-mercaptopyruva 31.4 1.6E+02 0.0034 26.7 6.5 47 192-239 71-121 (281)
94 PF02787 CPSase_L_D3: Carbamoy 31.1 1.4E+02 0.003 24.3 5.4 29 191-221 84-112 (123)
95 PF06325 PrmA: Ribosomal prote 30.6 73 0.0016 29.7 4.2 29 205-235 159-187 (295)
96 cd04721 BAH_plant_1 BAH, or Br 30.5 47 0.001 27.2 2.6 27 12-39 3-29 (130)
97 TIGR00281 segregation and cond 30.0 62 0.0013 28.3 3.5 26 111-138 99-124 (186)
98 PRK00050 16S rRNA m(4)C1402 me 29.9 1.3E+02 0.0028 28.2 5.7 45 196-240 8-53 (296)
99 PHA03412 putative methyltransf 29.8 66 0.0014 29.4 3.7 23 208-230 50-72 (241)
100 PRK04457 spermidine synthase; 29.8 1.1E+02 0.0024 27.7 5.2 24 206-229 65-88 (262)
101 PF01272 GreA_GreB: Transcript 29.5 1.3E+02 0.0029 21.8 4.8 57 14-71 3-65 (77)
102 COG4123 Predicted O-methyltran 29.3 64 0.0014 29.6 3.6 42 189-230 25-67 (248)
103 PF05175 MTS: Methyltransferas 29.3 48 0.001 27.6 2.6 44 191-235 14-58 (170)
104 COG2841 Uncharacterized protei 29.2 49 0.0011 24.8 2.3 27 110-136 39-66 (72)
105 COG2826 Tra8 Transposase and i 28.8 69 0.0015 30.5 3.7 46 116-161 13-69 (318)
106 COG2230 Cfa Cyclopropane fatty 28.1 96 0.0021 29.0 4.5 35 196-230 61-95 (283)
107 cd08264 Zn_ADH_like2 Alcohol d 27.9 1.1E+02 0.0023 27.3 4.8 33 200-232 155-189 (325)
108 TIGR02650 RNase_Z_T_toga ribon 27.7 26 0.00057 32.6 0.7 78 112-205 157-236 (277)
109 PF08541 ACP_syn_III_C: 3-Oxoa 27.3 57 0.0012 24.0 2.4 28 196-223 57-84 (90)
110 PF03918 CcmH: Cytochrome C bi 27.3 73 0.0016 26.8 3.3 50 99-171 45-96 (148)
111 cd08239 THR_DH_like L-threonin 27.0 84 0.0018 28.4 3.9 34 199-232 155-189 (339)
112 TIGR01177 conserved hypothetic 26.9 1E+02 0.0022 28.6 4.6 37 189-225 164-200 (329)
113 cd08292 ETR_like_2 2-enoyl thi 26.8 1E+02 0.0022 27.3 4.4 32 200-231 132-165 (324)
114 PF11961 DUF3475: Domain of un 26.8 40 0.00087 24.2 1.4 32 111-143 17-48 (57)
115 COG2890 HemK Methylase of poly 26.8 57 0.0012 30.0 2.8 45 186-230 87-133 (280)
116 PRK11207 tellurite resistance 26.7 78 0.0017 27.0 3.5 31 198-228 21-51 (197)
117 cd08301 alcohol_DH_plants Plan 26.4 79 0.0017 29.2 3.7 33 199-231 179-212 (369)
118 COG1889 NOP1 Fibrillarin-like 25.6 1E+02 0.0022 28.0 4.0 43 192-235 58-103 (231)
119 PRK01885 greB transcription el 25.0 2.1E+02 0.0045 24.2 5.7 62 9-71 77-144 (157)
120 KOG1596 Fibrillarin and relate 25.0 43 0.00092 31.3 1.6 40 196-235 142-184 (317)
121 KOG1709 Guanidinoacetate methy 24.9 1.1E+02 0.0023 28.3 4.1 88 119-228 31-122 (271)
122 PRK04280 arginine repressor; P 24.8 1.7E+02 0.0037 24.5 5.1 46 195-240 74-124 (148)
123 PLN03131 hypothetical protein; 24.7 69 0.0015 33.3 3.1 47 113-159 67-121 (705)
124 PLN02336 phosphoethanolamine N 24.3 1.5E+02 0.0032 28.8 5.3 36 196-231 255-290 (475)
125 cd08274 MDR9 Medium chain dehy 24.2 1.3E+02 0.0029 27.0 4.7 33 200-232 170-204 (350)
126 TIGR03109 exosortase_1 exosort 24.1 84 0.0018 28.9 3.4 33 188-220 138-180 (267)
127 PRK05753 nucleoside diphosphat 24.1 1.7E+02 0.0037 24.0 4.9 61 8-69 45-112 (137)
128 PRK00226 greA transcription el 24.0 2.6E+02 0.0056 23.2 6.1 62 8-70 76-144 (157)
129 TIGR03366 HpnZ_proposed putati 23.9 1E+02 0.0022 27.4 3.8 34 198-231 111-145 (280)
130 COG5394 Uncharacterized protei 23.8 71 0.0015 27.9 2.6 37 101-137 16-60 (193)
131 cd08281 liver_ADH_like1 Zinc-d 23.8 99 0.0021 28.6 3.9 32 200-231 184-216 (371)
132 PF15533 Toxin_54: Putative to 23.6 79 0.0017 23.4 2.5 22 113-134 7-28 (66)
133 PLN02950 4-alpha-glucanotransf 23.1 1.9E+02 0.0042 31.3 6.3 111 111-227 580-760 (909)
134 PF01189 Nol1_Nop2_Fmu: NOL1/N 23.0 1.6E+02 0.0035 27.0 5.0 44 192-235 69-113 (283)
135 PF01402 RHH_1: Ribbon-helix-h 23.0 1.4E+02 0.0031 18.4 3.4 15 124-138 20-34 (39)
136 PF01412 ArfGap: Putative GTPa 22.8 1.1E+02 0.0023 24.3 3.4 43 113-158 60-112 (116)
137 cd08238 sorbose_phosphate_red 22.7 1E+02 0.0023 29.1 3.9 34 202-235 170-206 (410)
138 TIGR02822 adh_fam_2 zinc-bindi 22.7 1.1E+02 0.0025 27.9 4.0 33 199-231 157-190 (329)
139 PRK08008 caiC putative crotono 22.4 1.8E+02 0.0039 27.7 5.4 29 191-219 45-73 (517)
140 TIGR03587 Pse_Me-ase pseudamin 22.4 1.9E+02 0.0041 25.0 5.1 31 204-235 40-70 (204)
141 PF13489 Methyltransf_23: Meth 22.3 1.7E+02 0.0037 22.9 4.5 24 205-228 20-43 (161)
142 COG1064 AdhP Zn-dependent alco 22.3 82 0.0018 30.2 3.0 30 201-230 160-190 (339)
143 PRK13168 rumA 23S rRNA m(5)U19 22.2 1.6E+02 0.0034 28.6 5.0 34 196-229 286-319 (443)
144 PRK00135 scpB segregation and 22.2 1.1E+02 0.0024 26.7 3.6 26 111-138 102-127 (188)
145 cd08277 liver_alcohol_DH_like 22.0 1.1E+02 0.0023 28.4 3.7 32 200-231 177-209 (365)
146 PLN03154 putative allyl alcoho 22.0 1.5E+02 0.0033 27.3 4.7 31 201-231 152-184 (348)
147 PF15456 Uds1: Up-regulated Du 21.8 53 0.0011 26.9 1.4 38 106-157 11-48 (124)
148 COG1386 scpB Chromosome segreg 21.7 70 0.0015 27.9 2.3 26 111-138 104-129 (184)
149 TIGR02825 B4_12hDH leukotriene 21.6 1.3E+02 0.0028 27.1 4.0 31 201-231 132-164 (325)
150 cd05188 MDR Medium chain reduc 21.6 1.5E+02 0.0033 24.9 4.4 32 199-230 126-158 (271)
151 cd08283 FDH_like_1 Glutathione 21.4 1.3E+02 0.0028 28.1 4.2 34 201-235 178-212 (386)
152 PRK05579 bifunctional phosphop 21.3 1.6E+02 0.0035 28.6 4.8 80 112-235 132-230 (399)
153 TIGR00406 prmA ribosomal prote 21.3 1.4E+02 0.003 27.2 4.2 29 205-235 157-185 (288)
154 cd05195 enoyl_red enoyl reduct 21.2 1.3E+02 0.0028 25.4 3.8 33 199-231 100-134 (293)
155 PF14076 DUF4258: Domain of un 21.1 1.5E+02 0.0033 20.5 3.6 31 113-143 1-31 (73)
156 TIGR02818 adh_III_F_hyde S-(hy 21.1 1.2E+02 0.0026 28.1 3.9 31 201-231 179-210 (368)
157 cd02783 MopB_CT_2 The MopB_CT_ 20.7 1.8E+02 0.0039 24.1 4.5 42 17-62 46-87 (156)
158 PRK09424 pntA NAD(P) transhydr 20.6 67 0.0014 32.4 2.1 36 196-231 153-189 (509)
159 PRK13810 orotate phosphoribosy 20.6 1E+02 0.0023 26.7 3.1 30 202-231 116-150 (187)
160 TIGR03763 exosortase_3 exosort 20.5 98 0.0021 28.5 3.0 31 191-221 135-175 (260)
161 PTZ00118 40S ribosomal protein 20.2 1.9E+02 0.0042 26.8 4.8 30 16-45 153-182 (262)
162 PRK05134 bifunctional 3-demeth 20.1 1.9E+02 0.0042 24.7 4.7 52 174-228 13-69 (233)
163 COG0075 Serine-pyruvate aminot 20.1 1.4E+02 0.0031 29.0 4.2 41 195-235 66-108 (383)
No 1
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=100.00 E-value=3.9e-79 Score=561.61 Aligned_cols=235 Identities=41% Similarity=0.648 Sum_probs=209.7
Q ss_pred CCCccCCCEEEEEeCCCCeEEEEEEecCCEEEEce-eeeecCcccCCCCCcEEEEeCCCCCCCccccCCCCc---c----
Q 025480 14 AQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTE---D---- 85 (252)
Q Consensus 14 ~~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK-~~f~~~~lIG~pyG~t~ei~~~~~~~~~~~~~~~~~---~---- 85 (252)
++.|++||||+|++|++ .+++++|+|+++|+||| ++|++++|||+|||+|||+.+++....++......+ +
T Consensus 1 h~~I~~gd~Vil~~~~~-~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~ 79 (299)
T PF04189_consen 1 HSIIQEGDYVILRLPSG-NMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEE 79 (299)
T ss_pred CCCcCCCCEEEEEcCCC-cEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccc
Confidence 35799999999999964 67799999999999999 569999999999999999998884332221110000 0
Q ss_pred hhhhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCc
Q 025480 86 DVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPK 165 (252)
Q Consensus 86 ~~~~~~~~~~~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~ 165 (252)
.....+..+..+.++|||+|+|++++|+||+|||++||++|++|+|||++|++||+||++||+||||||+|||+|||+++
T Consensus 80 ~~~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~ 159 (299)
T PF04189_consen 80 EGDDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKR 159 (299)
T ss_pred ccccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhce
Confidence 00012334567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE--EecCCCCC
Q 025480 166 VLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY--YFLGSFVS 243 (252)
Q Consensus 166 ~~vl~Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i--~~~g~~p~ 243 (252)
|+|++||+++||++||.|+|.||++||+|+|||||+||||++|+||||||+|+|||+|||||||||.|+| +|.|++||
T Consensus 160 ftv~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~~~~~~p 239 (299)
T PF04189_consen 160 FTVLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLHHGNSPP 239 (299)
T ss_pred EEEeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEeeCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccceee
Q 025480 244 SNIILI 249 (252)
Q Consensus 244 ~~~~l~ 249 (252)
++++|.
T Consensus 240 ~~~~l~ 245 (299)
T PF04189_consen 240 NLDILK 245 (299)
T ss_pred CHHHHH
Confidence 998764
No 2
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-63 Score=469.01 Aligned_cols=225 Identities=46% Similarity=0.622 Sum_probs=200.9
Q ss_pred CCccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCC----CCcEEEEeCCCCCCCccccCCCCcchhhhh
Q 025480 15 QLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP----FGSLFQVDNGKEGPNLSRVIPSTEDDVQEK 90 (252)
Q Consensus 15 ~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~p----yG~t~ei~~~~~~~~~~~~~~~~~~~~~~~ 90 (252)
..|++|++|.|...+|.+..+++..++++|.+||..|.+++++|+| ||+.|++..+......+...+. ..+.
T Consensus 16 ~~i~~g~~v~L~k~d~~~~v~v~~~~~~~i~~~k~~f~~d~~~gkpk~~~~g~~fe~~~~e~~~~~s~~~~~----~~e~ 91 (475)
T KOG1416|consen 16 IEIKSGTSVKLQKFDGFRVVDVRGGPTKKILIGKEGFSADNLFGKPKNRLLGQEFEVTNEEKDDGLSSPPLS----KKER 91 (475)
T ss_pred eeecCCceEEeeccCCceeeeeecccccEEEeccccccchhhhCCCCccccchhhhhhcccccccccccCcc----cccc
Confidence 4699999999998876555555555999999999779999999999 9999999877432211111110 0122
Q ss_pred hhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeC
Q 025480 91 EDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRR 170 (252)
Q Consensus 91 ~~~~~~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~ 170 (252)
+..+..+.++|||+|+|++.+|+||+|||++||++|++|+|||++|++||+||++||+||||||++||+|||..+|+|+|
T Consensus 92 ev~~~~e~s~dNr~ivd~~kaQ~Lt~EeI~~mr~eg~~g~EiI~kLienSkTF~~KT~fSQeKYv~rK~kKy~~~~~v~r 171 (475)
T KOG1416|consen 92 EVLEISESSADNREIVDDGKAQKLTQEEIEEMRQEGLSGEEIIEKLIENSKTFHNKTVFSQEKYVLRKKKKYAKRFQVLR 171 (475)
T ss_pred ccccccccCCCchhhhcccccccCCHHHHHHHHHhccCHHHHHHHHHhcCcccccchhhhHHHHHHHHhhhhhhheeeec
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE--EecCCCCC
Q 025480 171 PFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY--YFLGSFVS 243 (252)
Q Consensus 171 Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i--~~~g~~p~ 243 (252)
||+|+||++||.|||+||++||.|+|||||++|||++|++|||+|.|+||++|||+|||||.|.| +|+|.+|+
T Consensus 172 Pt~r~l~~~yy~kdp~rI~~lr~D~Lsl~Ltlanv~~g~~~Lv~d~tgGL~~galleRmgG~G~i~~~hpG~vp~ 246 (475)
T KOG1416|consen 172 PTIRLLLQAYYDKDPQRILDLRADTLSLLLTLANVQAGGNYLVVDETGGLLLGALLERMGGTGDIIHKHPGKVPQ 246 (475)
T ss_pred hhHHHHHHHHHHhChHHHhhhhHHHHHHHHHHhCcccCCeEEEEecCCcchHHHHHHHhcCCceeEEecCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999987
No 3
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.5e-16 Score=139.84 Aligned_cols=119 Identities=22% Similarity=0.278 Sum_probs=101.6
Q ss_pred CccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCCCCcEEEEeCCCCCCCccccCCCCcchhhhhhhhhc
Q 025480 16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI 95 (252)
Q Consensus 16 ~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~pyG~t~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
++++||.|+|...++ +.+++++.++++++..+|.|+++++||+|||+....+.|..+
T Consensus 1 ~~~~gd~vlL~~~~~-~~~lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~f---------------------- 57 (256)
T COG2519 1 PFKEGDPVLLTDERG-RRYLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKF---------------------- 57 (256)
T ss_pred CCCCCCeEEEEecCC-cEEEEeccCCcccccceeeechhhhcCCCCCceEEeeCCceE----------------------
Confidence 479999999999975 566999999999999999999999999999999999877643
Q ss_pred cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHH
Q 025480 96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS 175 (252)
Q Consensus 96 ~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~ 175 (252)
.|++|++.+
T Consensus 58 -----------------------------------------------------------------------~vl~p~~~d 66 (256)
T COG2519 58 -----------------------------------------------------------------------YVLKPTPED 66 (256)
T ss_pred -----------------------------------------------------------------------EEeCCCHHH
Confidence 344444444
Q ss_pred HHHH-------HhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecC
Q 025480 176 ICEA-------YFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLG 239 (252)
Q Consensus 176 l~e~-------y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g 239 (252)
.... .|+|| .|+|+.++||.||+||+.++++||.+++++|..+|+.|+| +|+-
T Consensus 67 ~~~~~~R~tQiIyPKD-----------~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~ 127 (256)
T COG2519 67 YLLSMKRRTQIIYPKD-----------AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI 127 (256)
T ss_pred HHHhCcCCCceecCCC-----------HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEe
Confidence 3332 36666 7999999999999999999999999999999999999999 8764
No 4
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.3e-12 Score=115.32 Aligned_cols=118 Identities=22% Similarity=0.287 Sum_probs=99.2
Q ss_pred CCccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCCCCcEEEEeCCCCCCCccccCCCCcchhhhhhhhh
Q 025480 15 QLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQ 94 (252)
Q Consensus 15 ~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~pyG~t~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (252)
..|++||.||+.+..| .++.+++.+++++..--|.|+..++||+|||+......|++
T Consensus 11 ~~ie~GDlvi~~~~~~-~m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~---------------------- 67 (314)
T KOG2915|consen 11 RRIEEGDLVIAYVGRG-EMKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKF---------------------- 67 (314)
T ss_pred hhcccCCEEEEEEccC-ceEEEEEeccceeeccccccchhheecCCccceeeecCCcE----------------------
Confidence 4599999999999986 46699999999998888999999999999999888765554
Q ss_pred ccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChH
Q 025480 95 ISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFAR 174 (252)
Q Consensus 95 ~~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~ 174 (252)
+.+++||+.
T Consensus 68 -----------------------------------------------------------------------vylL~PTpE 76 (314)
T KOG2915|consen 68 -----------------------------------------------------------------------VYLLQPTPE 76 (314)
T ss_pred -----------------------------------------------------------------------EEEecCChH
Confidence 455556555
Q ss_pred HHHH-------HHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-Ee
Q 025480 175 SICE-------AYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YF 237 (252)
Q Consensus 175 ~l~e-------~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~ 237 (252)
+-.- +.|.+| +|||+++-+|+||++|++.+|+||-+.-|++..+|..|++ .+
T Consensus 77 LWTl~LphRTQI~Yt~D-----------ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tf 136 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPD-----------IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTF 136 (314)
T ss_pred HhhhhccCcceEEeccc-----------HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEE
Confidence 4332 234555 8999999999999999999999999999999999999999 44
No 5
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.69 E-value=2.5e-08 Score=90.37 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=43.8
Q ss_pred cEEEeCCChHHHHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecC
Q 025480 165 KVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLG 239 (252)
Q Consensus 165 ~~~vl~Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g 239 (252)
++.||+||+.+.... + |.+..-+=+-.+|+|+.+.+|+||+||++++++||.+|.+++..+|+.|+| +|+=
T Consensus 2 ~v~vl~Pt~e~~~~~-l---~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~ 73 (247)
T PF08704_consen 2 FVYVLRPTPELWTLS-L---PRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF 73 (247)
T ss_dssp --------HHHHHHT-S----SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES
T ss_pred CccccchhHHHHHHh-c---cCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc
Confidence 478999998876542 1 111112224448999999999999999999999999999999999999999 8763
No 6
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=98.17 E-value=3.2e-06 Score=59.61 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCCCCcEE
Q 025480 15 QLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLF 65 (252)
Q Consensus 15 ~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~pyG~t~ 65 (252)
..+++||.|-|..+.|+ ++-+.|++|+.++..+|.|..|+|||+|.|++.
T Consensus 4 Gpf~~GdrVQlTD~Kgr-~~Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGR-KHTITLEPGGEFHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp -S--TT-EEEEEETT---EEEEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred CCCCCCCEEEEccCCCC-eeeEEECCCCeEEcCccccchhheecCCCcEEe
Confidence 45899999999999874 558899999999999999999999999999875
No 7
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.87 E-value=0.003 Score=55.82 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=58.7
Q ss_pred HHHHHHHcC-CChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHhhcCcchhc----CCC
Q 025480 118 DIDEMRRQG-ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIG----FLR 192 (252)
Q Consensus 118 eI~eLK~~g-~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~l~e~y~~k~P~Ki~----~lR 192 (252)
=|+.|++.| +....+++.+.+= ..+ .| +.+..+.. =|.-.|-.|. -..
T Consensus 5 lv~~l~~~g~v~~~~v~~A~~~V----------pR~--------~F------vp~~~~~~---aY~d~~l~i~~~~~is~ 57 (209)
T PF01135_consen 5 LVDNLIRPGDVTDPRVLDAFRAV----------PRE--------DF------VPPAFRDL---AYEDRPLPIGCGQTISA 57 (209)
T ss_dssp HHHHHHHTTSS-SHHHHHHHHHS-----------GG--------GC------SSCGGGGG---TTSSS-EEEETTEEE--
T ss_pred HHHHHHHcCCCCCHHHHHHHHhC----------CHH--------Hh------CchhhhcC---CCCCCCeeecceeechH
Confidence 367889888 7888888888631 111 11 11111111 1233333222 256
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
+...|.||.+..++||.|||.+++++|-.||.++..+|..|+|
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~V 100 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRV 100 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceE
Confidence 8899999999999999999999999999999999999988966
No 8
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.02 Score=51.43 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=45.6
Q ss_pred hcCcchhc-CCC---HHHHHHHHhhcC--CCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 182 KKNPARIG-FLR---VDMLSLLLSMGN--VAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 182 ~k~P~Ki~-~lR---~DtLa~iL~~an--V~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.-.|+++. +++ +++-|-+|-+-. .+||.+.|-+++++|-||+.++.-+|+.|.+
T Consensus 51 ~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~ 110 (237)
T KOG1661|consen 51 MDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGN 110 (237)
T ss_pred CCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCcc
Confidence 34567887 665 566777888888 8999999999999999999999999999983
No 9
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.51 E-value=0.18 Score=43.91 Aligned_cols=93 Identities=18% Similarity=0.317 Sum_probs=62.2
Q ss_pred HHHHHHHHHcC-CChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHhhcCcchh----cC
Q 025480 116 GEDIDEMRRQG-ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARI----GF 190 (252)
Q Consensus 116 ~eeI~eLK~~g-~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~l~e~y~~k~P~Ki----~~ 190 (252)
.+-|+.|++.| +....+.+.+..=. +..|-.+.| .+.-|...|..+ .-
T Consensus 8 ~~~v~~~~~~~~v~~~~v~~a~~~v~-----R~~f~~~~~----------------------~~~~y~d~~~~~~~~~~~ 60 (215)
T TIGR00080 8 KALIDKLINEGYIKSKRVIDALLSVP-----REEFVPEHF----------------------KEYAYVDTPLEIGYGQTI 60 (215)
T ss_pred HHHHHHHHhcCCcCCHHHHHHHHhCC-----hhhhCCchh----------------------HhhCcCCCCcccCCCCEe
Confidence 45677888887 78888888876311 112222221 111122333222 12
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 191 lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..+.+.+.|+.+.++++|.+||.+++++|.+++.++++.+.+|.|
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V 105 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLV 105 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEE
Confidence 335567899999999999999999999999999999987767777
No 10
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.93 E-value=0.16 Score=44.44 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=41.3
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 191 lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..+...+.|+.+.++++|.+||.+++++|.+++.+++++|..|+|
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V 104 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKV 104 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEE
Confidence 567888999999999999999999999999999999998877777
No 11
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.16 Score=45.38 Aligned_cols=89 Identities=20% Similarity=0.357 Sum_probs=59.0
Q ss_pred HHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHhhcCcchhcCCCHHHHHH
Q 025480 119 IDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198 (252)
Q Consensus 119 I~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~ 198 (252)
.++|+..|+....+.+.+..- -+..|--+-| +..-|...--.+. . -..-..+.+.|.
T Consensus 7 ~~~lr~~~i~~~~v~~A~~~v-----PRe~FVp~~~---~~~AY~d~~lpi~-------------~--gqtis~P~~vA~ 63 (209)
T COG2518 7 VERLRTEGITDERVLKAFLAV-----PRELFVPAAY---KHLAYEDRALPIG-------------C--GQTISAPHMVAR 63 (209)
T ss_pred HHHHHHcCCCcHHHHHHHHhC-----CHHhccCchh---hcccccCCcccCC-------------C--CceecCcHHHHH
Confidence 467888888778888777632 2334444444 2333333222211 1 122345788999
Q ss_pred HHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhC
Q 025480 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~~~Gll~aAvleRmg 230 (252)
|+.+.++++|.+||++++++|--+|.+++..|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~ 95 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG 95 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC
Confidence 99999999999999999999998887776554
No 12
>PRK04266 fibrillarin; Provisional
Probab=92.98 E-value=0.21 Score=44.51 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=36.7
Q ss_pred CHHHHHHHHh---hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 192 RVDMLSLLLS---MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 192 R~DtLa~iL~---~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
|+...+.||+ +.++++|++||.++++.|.++..++++++ .|+|
T Consensus 54 r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V 99 (226)
T PRK04266 54 RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVV 99 (226)
T ss_pred ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeE
Confidence 3455666776 68999999999999999999999999997 7888
No 13
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.74 E-value=0.27 Score=42.67 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
+..++.|+.+.++++|.+||.+++++|.+++.++++++..|+|
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V 100 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKV 100 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEE
Confidence 4567889999999999999999999999999999999866777
No 14
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.50 E-value=0.52 Score=40.71 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 190 ~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
...++..+.|+.+++++++.+||.+++++|.++..+++.
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~ 99 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL 99 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH
Confidence 457888999999999999999999999999998876654
No 15
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.16 E-value=0.52 Score=44.39 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=40.2
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 192 R~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+..++.|+.+.++++|.+||.++++.|.+++.++++.+..|.|
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~V 108 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLV 108 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEE
Confidence 57889999999999999999999999999999999988777776
No 16
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=87.98 E-value=1.4 Score=35.42 Aligned_cols=65 Identities=18% Similarity=0.404 Sum_probs=48.0
Q ss_pred CccccccCcccccCCHHHHHHHHHcC--------CChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCC
Q 025480 101 DNRAIVDDNKAQCLSGEDIDEMRRQG--------ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPF 172 (252)
Q Consensus 101 dNr~i~Dd~~~QkLs~eeI~eLK~~g--------~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt 172 (252)
.||-+.|..+|+=.|-|+|.+|-++| .||++|-.++
T Consensus 7 ~NRRLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~i------------------------------------ 50 (107)
T TIGR01848 7 PNRRLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSI------------------------------------ 50 (107)
T ss_pred CCCcccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHH------------------------------------
Confidence 49999999999999999999999999 3466555543
Q ss_pred hHHHHHHHhhcCcchhcCCCHHHHHHHHhhcC
Q 025480 173 ARSICEAYFKKNPARIGFLRVDMLSLLLSMGN 204 (252)
Q Consensus 173 ~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~an 204 (252)
+.++.++.......-+-.+.|.+|+...+
T Consensus 51 ---L~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 51 ---LLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ---HHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 34455555444556677888888876543
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=87.19 E-value=1.9 Score=36.94 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+.-+..|...++.+|.+||.+++++|.++..++.++++.|+|
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v 68 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKV 68 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence 4445666778899999999999999999999999999888888
No 18
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=87.01 E-value=1.7 Score=36.87 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=37.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..+...-.+..+++|.+||.++.+.|.++.+++.++.+.++|
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v 60 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRV 60 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceE
Confidence 446677778899999999999999999999999999888877
No 19
>PLN02476 O-methyltransferase
Probab=85.50 E-value=2 Score=39.78 Aligned_cols=59 Identities=17% Similarity=-0.000 Sum_probs=48.8
Q ss_pred hcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecCC
Q 025480 182 KKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLGS 240 (252)
Q Consensus 182 ~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g~ 240 (252)
..++....-+.++...++..++......++|.++++.|..+.+++..|+..|+| ..+.+
T Consensus 93 ~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d 152 (278)
T PLN02476 93 SKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERD 152 (278)
T ss_pred HhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC
Confidence 333334567788888888889999999999999999999999999999989998 55543
No 20
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=83.01 E-value=1.2 Score=38.60 Aligned_cols=33 Identities=36% Similarity=0.606 Sum_probs=26.8
Q ss_pred HhhcCCCCCCeEEEEeC---CCcHHHHH--HHHHhCCC
Q 025480 200 LSMGNVAANSDVLVVDM---AGGLLTGA--VAERLGGL 232 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~---~~Gll~aA--vleRmgg~ 232 (252)
++-.-|.||.||+|+|+ ++|-+.|| +++|+|++
T Consensus 114 mq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 114 MQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred eeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 35567899999999999 88877776 68899873
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=82.48 E-value=3.9 Score=31.10 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=33.0
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+.++...++.++.++|.++.+.|.++..+++++++ +++
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v 46 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRV 46 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceE
Confidence 456777778999999999999999999999998865 565
No 22
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=81.92 E-value=1.3 Score=32.43 Aligned_cols=37 Identities=32% Similarity=0.621 Sum_probs=31.7
Q ss_pred CccccccCcccccCCHHHHHHHHHcC--------CChHHHHHHHH
Q 025480 101 DNRAIVDDNKAQCLSGEDIDEMRRQG--------ATGEEIVEALI 137 (252)
Q Consensus 101 dNr~i~Dd~~~QkLs~eeI~eLK~~g--------~~g~eII~~Lv 137 (252)
-||-|.|..+|+=+|-|+|.+|-++| .||++|-..++
T Consensus 7 ~NRRLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL 51 (64)
T PF07879_consen 7 PNRRLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSIL 51 (64)
T ss_pred CCCccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHH
Confidence 49999999999999999999999999 46777765543
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=81.05 E-value=3.1 Score=35.96 Aligned_cols=40 Identities=23% Similarity=0.060 Sum_probs=35.3
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
-..+|.+.++.+|.+||.++.+.|.++..++++.|..|.|
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v 73 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHV 73 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEE
Confidence 3567778899999999999999999999999999887777
No 24
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=79.54 E-value=4.2 Score=36.76 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=35.1
Q ss_pred HHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 194 DMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 194 DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
|..+|+.. ..++++|.+||-+..+.|-.+..++++|+..|.|
T Consensus 57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v 99 (264)
T TIGR00446 57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAI 99 (264)
T ss_pred CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEE
Confidence 34455543 5689999999999999999999999999988888
No 25
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=78.76 E-value=3.7 Score=39.99 Aligned_cols=43 Identities=21% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.|..||++. +.++.+|.+||-+..+.|-.|.+++++|++.|.|
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V 265 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKI 265 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEE
Confidence 345566665 6799999999999999999999999999988888
No 26
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=78.55 E-value=4.3 Score=39.36 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.|-.++++. +.++.+|.+||.+.++.|..+..++++|++.|+|
T Consensus 237 qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v 280 (434)
T PRK14901 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEI 280 (434)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceE
Confidence 345566665 4789999999999999999999999999999988
No 27
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=78.45 E-value=5.6 Score=36.08 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHh
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERL 229 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRm 229 (252)
..+..|+.++++.+|.+||.++.+.|.+|.+++++.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC
Confidence 456778888899999999999999999999999983
No 28
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=77.50 E-value=4.9 Score=35.77 Aligned_cols=51 Identities=14% Similarity=-0.050 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecCC
Q 025480 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLGS 240 (252)
Q Consensus 190 ~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g~ 240 (252)
.+-+++..++..++......++|.++++.|.-+.+++..+++.|+| ..+-+
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d 102 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID 102 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC
Confidence 4456666666678888889999999999999999999999999999 55543
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=76.08 E-value=4.5 Score=36.16 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.3
Q ss_pred HhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 200 LSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
+.++++.+|.+||+++.+.|+.+..++.++|..|+|
T Consensus 70 ~~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v 105 (272)
T PRK11873 70 TALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKV 105 (272)
T ss_pred hhhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 356789999999999999999888888888888877
No 30
>PRK08317 hypothetical protein; Provisional
Probab=74.17 E-value=7.1 Score=33.06 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 197 a~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+++.+.++.++.+||.++.+.|.++..+++++++.+++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v 47 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRV 47 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEE
Confidence 567778899999999999999999999999998766666
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=73.12 E-value=8.8 Score=32.61 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+.-+.++.+.++.+|++||.+.++.|.++..++.+ ++.++|
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V 67 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRV 67 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEE
Confidence 344456788889999999999999999998888754 444666
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=72.13 E-value=12 Score=31.42 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+.-+.++.+..+.++.++|.+++++|.++.+++.+ ++.++|
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v 58 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQ-FPSLQV 58 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHH-CCCCEE
Confidence 344456667778889999999999999999999876 455666
No 33
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=71.89 E-value=3.6 Score=32.73 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHcCC-ChHHHHHHHHhcc-------cccccchhhcHHHHHHHh
Q 025480 112 QCLSGEDIDEMRRQGA-TGEEIVEALIANS-------ATFEKKTSFSQEKYKLKK 158 (252)
Q Consensus 112 QkLs~eeI~eLK~~g~-~g~eII~~LvenS-------~tF~~KT~FSqeKYlkkK 158 (252)
.+.+.++|+.|+..|. ...++-+...... +.-..++.|.++||..|+
T Consensus 49 d~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~ 103 (112)
T smart00105 49 DTWTEEELRLLQKGGNENANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKL 103 (112)
T ss_pred CCCCHHHHHHHHHhhhHHHHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhh
Confidence 3688999999997764 2344444443221 235678889999998765
No 34
>PTZ00146 fibrillarin; Provisional
Probab=71.73 E-value=5.4 Score=37.38 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=31.5
Q ss_pred hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 202 MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 202 ~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..+|.+|.+||.+....|..|..+++++|.+|+|
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~V 160 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVV 160 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence 3467999999999999999999999999999999
No 35
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=70.89 E-value=9 Score=37.10 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=33.7
Q ss_pred HHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 194 DMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 194 DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
|.-|++.. +.++.+|.+||.+..+.|..+..+++++++ |+|
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v 271 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQV 271 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEE
Confidence 44455543 778999999999999999999999999865 777
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=70.76 E-value=13 Score=31.76 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=23.9
Q ss_pred cCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 203 GNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 203 anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..+. |.++|.++++.|.++..++ ++++.++|
T Consensus 39 ~~~~-~~~vLDiGcGtG~~s~~la-~~~~~~~V 69 (181)
T TIGR00138 39 EYLD-GKKVIDIGSGAGFPGIPLA-IARPELKL 69 (181)
T ss_pred HhcC-CCeEEEecCCCCccHHHHH-HHCCCCeE
Confidence 3443 8899999999998888877 45666777
No 37
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.15 E-value=4.2 Score=38.91 Aligned_cols=34 Identities=38% Similarity=0.525 Sum_probs=29.3
Q ss_pred HhhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCc
Q 025480 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGLE 233 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~~~-Gll~aAvleRmgg~G 233 (252)
..+|||++|++|||++.+- ||+|+.+|..||-.=
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~ 196 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASD 196 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCc
Confidence 3489999999999999854 999999999998653
No 38
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=69.30 E-value=9.2 Score=34.46 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
++.+.++.+|.+||.++.+.|.++..+++++|..|.|
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V 101 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKV 101 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEE
Confidence 3456688999999999999999999999998877777
No 39
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=68.87 E-value=9 Score=36.03 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
++.+.+|..-|.++|+.-||+++-+-|-||-+++|+
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~ 79 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA 79 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh
Confidence 689999999999999999999999999999888874
No 40
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=68.82 E-value=12 Score=32.56 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHhhcC-CCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 197 SLLLSMGN-VAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 197 a~iL~~an-V~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
-+|...-+ +.+|.+||.++.+.|.++-.+++++|..|+|
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V 79 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRV 79 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceE
Confidence 44444445 5889999999999999999999999988888
No 41
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=68.25 E-value=10 Score=33.63 Aligned_cols=47 Identities=19% Similarity=0.011 Sum_probs=37.8
Q ss_pred hcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 188 i~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..+.|.....-+|...+..++.+||.++.+.|.++..++++. +.++|
T Consensus 10 ~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v 56 (255)
T PRK14103 10 FADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVI 56 (255)
T ss_pred HHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEE
Confidence 445566667778888889999999999999999999999886 33455
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=67.48 E-value=7.7 Score=35.58 Aligned_cols=36 Identities=31% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCC
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg 231 (252)
+-.++..++++||.|||.++.+-|-++-.++++-|.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~ 86 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC 86 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc
Confidence 567889999999999999999999999999999754
No 43
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=66.48 E-value=12 Score=33.41 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHh
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERL 229 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRm 229 (252)
...+..|+..+++.++.+||.++.+.|.+|.+++++.
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~ 51 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA 51 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC
Confidence 3456788888999999999999999999999999875
No 44
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=66.18 E-value=15 Score=33.40 Aligned_cols=53 Identities=13% Similarity=-0.061 Sum_probs=42.0
Q ss_pred hcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecCC
Q 025480 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLGS 240 (252)
Q Consensus 188 i~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g~ 240 (252)
++.+.+++...+..++....-.++|+++|+.|.-+.++++.|+.+|+| +.+.+
T Consensus 60 ~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~ 113 (247)
T PLN02589 60 IMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN 113 (247)
T ss_pred CCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC
Confidence 344456766666667777666899999999999999999999989999 66654
No 45
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=65.08 E-value=12 Score=36.37 Aligned_cols=40 Identities=25% Similarity=0.134 Sum_probs=34.1
Q ss_pred HHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 196 LSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 196 La~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
-++++. +.++.+|.+||.+.++.|..+.++++++++.|.|
T Consensus 238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v 278 (444)
T PRK14902 238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKV 278 (444)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 344443 6788999999999999999999999999888888
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=65.08 E-value=31 Score=29.76 Aligned_cols=51 Identities=16% Similarity=-0.018 Sum_probs=35.2
Q ss_pred CCChHHHHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 170 RPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 170 ~Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+|...+...++- | .++....+.+|.++|.++++.|.++.+++.+. +.++|
T Consensus 22 ~~~~~~~~~~~~~-----------d---~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V 72 (187)
T PRK00107 22 IRDPEELWERHIL-----------D---SLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-PELKV 72 (187)
T ss_pred cCCHHHHHHHHHH-----------H---HHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeE
Confidence 4566666665552 2 23333456679999999999999999888754 34566
No 47
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=63.87 E-value=6.4 Score=35.18 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=24.9
Q ss_pred HHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
++...+.++|.+||-+.++.|-++-.+++++|..|+|
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v 75 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKV 75 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EE
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEE
Confidence 4445588999999999999999999999999998888
No 48
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=63.08 E-value=10 Score=37.72 Aligned_cols=41 Identities=22% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHHHh-hc--CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEE
Q 025480 196 LSLLLS-MG--NVAANSDVLVVDMAGGLLTGAVAERLGGLEDYY 236 (252)
Q Consensus 196 La~iL~-~a--nV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i~ 236 (252)
-||+.. .. +++||.+||-+...-|--|..++++|++.|.|+
T Consensus 99 sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lv 142 (470)
T PRK11933 99 SSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIV 142 (470)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEE
Confidence 466544 34 889999999999999999999999999999983
No 49
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=61.47 E-value=17 Score=32.02 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
|-=+..|+....++|++++-++.++|-++--++ ++|..|++
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v 61 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRV 61 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceE
Confidence 344778888899999999999999999999999 89999998
No 50
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=60.78 E-value=15 Score=30.53 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 197 a~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
-.|+..+++.+|.++|.++.+.|.++..+++|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc
Confidence 46777889999999999999999999999888
No 51
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=60.43 E-value=12 Score=30.94 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=40.3
Q ss_pred cccCccccccCccc--ccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC
Q 025480 98 EFRDNRAIVDDNKA--QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (252)
Q Consensus 98 ~~~dNr~i~Dd~~~--QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~P 171 (252)
....|++|.|.++. +.| ..+|.+|-++|.|.+||++-++ .+|-.++..-+|
T Consensus 44 ~vCqnqsiadSna~iA~dm-R~~Vr~~i~~G~sd~eI~~~~v----------------------~RYG~~Vl~~Pp 96 (126)
T PRK10144 44 PQCQNQNLLESNAPVAVSM-RHQVYSMVAEGKSEVEIIGWMT----------------------ERYGDFVRYNPP 96 (126)
T ss_pred CCCCCCChhhcCCHHHHHH-HHHHHHHHHcCCCHHHHHHHHH----------------------HhcCCeEEecCC
Confidence 44679999998862 333 5688899999999999999999 488887777655
No 52
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=59.77 E-value=19 Score=32.35 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
..+..|+..+++.+|.+||.++.+.|.+|..++++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh
Confidence 34567777889999999999999999999999988
No 53
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=58.82 E-value=33 Score=27.96 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCC--CcH---HHHHHHHHhCCCceE-EecCCC
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMA--GGL---LTGAVAERLGGLEDY-YFLGSF 241 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~--~Gl---l~aAvleRmgg~G~i-~~~g~~ 241 (252)
.+.+..++...+|.++..|+++|.. +|. .+..+++.+ |.-.+ +|.|.-
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~-G~~~v~ildGG~ 133 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLC-GHPDVAILDGGF 133 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHc-CCCCeEEeCCCH
Confidence 3578999999999999999999964 454 344466544 56677 888853
No 54
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=58.59 E-value=13 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=40.2
Q ss_pred cccCccccccCccc-ccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC
Q 025480 98 EFRDNRAIVDDNKA-QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (252)
Q Consensus 98 ~~~dNr~i~Dd~~~-QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~P 171 (252)
...-|++|.|.++. -+=-..+|.+|-++|.|-+||++-++ .+|-.++..-+|
T Consensus 44 ~vCqnqsiadS~a~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v----------------------~RYG~~Vly~Pp 96 (126)
T TIGR03147 44 PQCQNQNLVESNSPIAYDLRHEVYSMVNEGKSNQQIIDFMT----------------------ARFGDFVLYNPP 96 (126)
T ss_pred CCCCCCChhhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH----------------------HhcCCeEEecCC
Confidence 44579999988862 12225688899999999999999999 488887777666
No 55
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=57.56 E-value=21 Score=34.47 Aligned_cols=40 Identities=13% Similarity=-0.059 Sum_probs=33.2
Q ss_pred HHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 195 MLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 195 tLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.-|+++. +.++.+|.+||.+..+.|..+..++++++ .|+|
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v 265 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQV 265 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeE
Confidence 3444444 57999999999999999999999999997 7777
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=57.23 E-value=11 Score=31.41 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=26.4
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 192 R~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
|+|| ..|+...+..++.++|.++.+.|.++-+++++
T Consensus 5 ~~d~-~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~ 40 (179)
T TIGR00537 5 AEDS-LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK 40 (179)
T ss_pred CccH-HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc
Confidence 5666 44555556677788999998888888877775
No 57
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=15 Score=31.29 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=43.3
Q ss_pred cccCccccccCccc-ccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC-ChHH
Q 025480 98 EFRDNRAIVDDNKA-QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP-FARS 175 (252)
Q Consensus 98 ~~~dNr~i~Dd~~~-QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~P-t~~~ 175 (252)
...-|++|.|.|+- -.=-..++-+|-++|.|-++||+.+++ +|..+|+.-+| +..+
T Consensus 48 p~CQNqsIadSnA~IA~DlR~~V~e~l~eGkS~~qIid~mVa----------------------RYG~FVly~Pp~~~~T 105 (153)
T COG3088 48 PQCQNQSIADSNAPIARDLRHQVYELLQEGKSDQQIIDYMVA----------------------RYGEFVLYKPPLTGQT 105 (153)
T ss_pred CcCCCCChhhhccHHHHHHHHHHHHHHHcCCcHHHHHHHHHH----------------------hhcceeeecCCCchhH
Confidence 34578888887752 222355778889999999999999995 88888887666 5555
Q ss_pred HHH
Q 025480 176 ICE 178 (252)
Q Consensus 176 l~e 178 (252)
+.=
T Consensus 106 ~lL 108 (153)
T COG3088 106 LLL 108 (153)
T ss_pred HHH
Confidence 543
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=57.14 E-value=17 Score=34.94 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCC
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg 231 (252)
+..++...++++|.+||.++.+.|.++..++++.|.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~ 191 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV 191 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC
Confidence 566788889999999999999999999999988764
No 59
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=56.27 E-value=9 Score=34.52 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-Eec
Q 025480 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFL 238 (252)
Q Consensus 197 a~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~ 238 (252)
+++|.+++++||+.|+.+=-++|-.|.-++--+|.+|.| .|.
T Consensus 38 ~E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~ 80 (238)
T COG4798 38 GEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV 80 (238)
T ss_pred cceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEec
Confidence 789999999999999999999999999999999999988 554
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=56.01 E-value=21 Score=34.75 Aligned_cols=40 Identities=23% Similarity=0.069 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
-.....+.++.+|.+||.+..+.|..+..+++++++.|.|
T Consensus 239 s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V 278 (445)
T PRK14904 239 QALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQI 278 (445)
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 3344457788999999999999999999999999888887
No 61
>PRK14967 putative methyltransferase; Provisional
Probab=55.85 E-value=21 Score=31.02 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 195 tLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.|+.++...++.+|.++|.++++.|.++..++.. | .+++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v 62 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-G-AGSV 62 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-C-CCeE
Confidence 4566677778999999999999999998887764 3 3455
No 62
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=54.94 E-value=21 Score=33.10 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
...+..|+..+++.+|.+||.++.+.|.+|.+++++
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~ 57 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL 57 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh
Confidence 345678888999999999999999999999999886
No 63
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=54.91 E-value=15 Score=30.75 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCCcCCCCCccCCCEEEEEeCCCCeEEEEEEecCCEEEEce----eeeecCcccCCCCCcEEEEeCCC
Q 025480 8 LDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN----KNCSLQPLIGCPFGSLFQVDNGK 71 (252)
Q Consensus 8 ~~~~~~~~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK----~~f~~~~lIG~pyG~t~ei~~~~ 71 (252)
....++.+.|+.||.|++..-. ++.-.+++|.-+-+.. +..-++-++|.| |.+.++.++.
T Consensus 25 v~g~SM~Ptl~~Gd~vlv~k~~---~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~p-Gd~v~i~~~~ 88 (163)
T TIGR02227 25 IPGGSMEPTLKEGDRILVNKFA---YGTSDPKRGDIVVFKDPDDNKNIYVKRVIGLP-GDKVEFRDGK 88 (163)
T ss_pred ECCcccccchhCCCEEEEEEeE---cCCCCCCCCcEEEEecCCCCCceeEEEEEecC-CCEEEEECCE
Confidence 3456777888889988876420 0011233333333321 234466788887 8888887654
No 64
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=53.31 E-value=23 Score=32.58 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhC
Q 025480 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 195 tLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmg 230 (252)
.+.-|...|++.++..||+++-+-|.||-.+++|..
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~ 53 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA 53 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC
Confidence 377899999999999999999999999999998754
No 65
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=52.05 E-value=26 Score=31.40 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 193 ~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
+++...|..++-.....++|+++|.-|.-+.+||.-|..+|+|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l 87 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRL 87 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeE
Confidence 7777777788888889999999999999999999999989988
No 66
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=51.53 E-value=20 Score=31.49 Aligned_cols=52 Identities=15% Similarity=-0.040 Sum_probs=37.4
Q ss_pred hcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecC
Q 025480 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLG 239 (252)
Q Consensus 188 i~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g 239 (252)
.+.+.+++-..+-.++....-.+||+++++.|.-+.++|+.+...|+| +.+-
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~ 78 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEI 78 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEES
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecC
Confidence 344445554444445555455799999999999999999999988999 5443
No 67
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=51.44 E-value=26 Score=31.83 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=29.7
Q ss_pred hhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 201 SMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+.++++|.+||-+..+.|-++-.++++.| .|.|
T Consensus 45 ~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v 78 (238)
T COG2226 45 SLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEV 78 (238)
T ss_pred HhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceE
Confidence 344666999999999999999999999988 8888
No 68
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=49.76 E-value=18 Score=30.08 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 025480 116 GEDIDEMRRQGATGEEIVEALI 137 (252)
Q Consensus 116 ~eeI~eLK~~g~~g~eII~~Lv 137 (252)
-+.|.+|+.+|.+.+||++++.
T Consensus 94 i~~I~el~~eG~s~eei~~ki~ 115 (131)
T PF08004_consen 94 IERIKELKSEGKSEEEIAEKIS 115 (131)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5789999999999999999987
No 69
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=49.75 E-value=21 Score=30.63 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=20.7
Q ss_pred CCCCCCeEEEEeC---CCcHHH--HHHHHHhCC
Q 025480 204 NVAANSDVLVVDM---AGGLLT--GAVAERLGG 231 (252)
Q Consensus 204 nV~~g~rvLv~d~---~~Gll~--aAvleRmgg 231 (252)
.+.+|.|||++|+ ++|-+. .-+++++|+
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga 144 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGA 144 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCC
Confidence 3459999999999 666443 346788876
No 70
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=48.82 E-value=37 Score=23.62 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=18.8
Q ss_pred CccCCCEEEEEeCCCCeEEEEEEecCCE
Q 025480 16 LTWEGCSVLLDINDGDRLVFARLTSGST 43 (252)
Q Consensus 16 ~I~eGd~Vll~~~~g~~~~~v~l~~~~~ 43 (252)
.+..||||++..++++...+.++-|-++
T Consensus 37 ~~~VGD~V~~~~~~~~~~~I~~vl~R~s 64 (68)
T cd04466 37 PPAVGDRVEFEPEDDGEGVIEEILPRKN 64 (68)
T ss_pred CCCCCcEEEEEECCCCcEEEEEEeccce
Confidence 4678999999876544454667765443
No 71
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=47.92 E-value=36 Score=30.67 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhC
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmg 230 (252)
++.-.++...++.++.+||.++.+.|.++..++++.|
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~ 75 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG 75 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC
Confidence 5677888889999999999999999988887777654
No 72
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=47.24 E-value=30 Score=30.47 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.....++....+.++.+||.++.+.|.++..++++.+ .++|
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v 58 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARI 58 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEE
Confidence 3356778888889999999999999999999998864 3455
No 73
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=46.40 E-value=46 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 204 NVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 204 nV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.+++|++||..+.++|--+.-+++-+|.+|.|
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~V 101 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVV 101 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcE
Confidence 46899999999999999999999999999999
No 74
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=46.19 E-value=35 Score=30.67 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHh
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERL 229 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRm 229 (252)
..+-.|+..+++.++..|++++.+.|.+|.+++++.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc
Confidence 345667778889899999999999999999999986
No 75
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=46.06 E-value=56 Score=27.41 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=29.9
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
...++......++.+||.++.+.|.++..++++.+..+++
T Consensus 28 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~ 67 (223)
T TIGR01934 28 RRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKV 67 (223)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceE
Confidence 3445555556689999999999999999998887543444
No 76
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=45.36 E-value=29 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=13.5
Q ss_pred CCCeEEEEeCCCcHHHHHHHH
Q 025480 207 ANSDVLVVDMAGGLLTGAVAE 227 (252)
Q Consensus 207 ~g~rvLv~d~~~Gll~aAvle 227 (252)
||.|||.++.+.|.++.++++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~ 21 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALAR 21 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHh
Confidence 456666666666666666666
No 77
>PLN02244 tocopherol O-methyltransferase
Probab=45.22 E-value=42 Score=31.42 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCC-----CCCCeEEEEeCCCcHHHHHHHHHhCC
Q 025480 194 DMLSLLLSMGNV-----AANSDVLVVDMAGGLLTGAVAERLGG 231 (252)
Q Consensus 194 DtLa~iL~~anV-----~~g~rvLv~d~~~Gll~aAvleRmgg 231 (252)
+.+-.++.++++ .++.+||.++.+.|.++..++++.|.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~ 142 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA 142 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCC
Confidence 346678888898 78999999999999999999887753
No 78
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=44.01 E-value=47 Score=24.83 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=33.0
Q ss_pred CCChHHHHHHHhhcCcchhcCCCHHHHHHHHhhcCCC
Q 025480 170 RPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVA 206 (252)
Q Consensus 170 ~Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~ 206 (252)
.-|+-.|.+.+-.++|.++....+-.+|++|...+|.
T Consensus 25 ~lsa~~If~~L~k~~~~~l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 25 WLSAAEIFERLQKKSPAALRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred eecHHHHHHHHHHhCccccccCCHHHHHHHHHHcCCC
Confidence 4477888888889999999999999999999999994
No 79
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=43.08 E-value=85 Score=26.57 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 194 DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.....++...++.++.++|.++.+.|.++..++.+.+...++
T Consensus 38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v 79 (239)
T PRK00216 38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEV 79 (239)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeE
Confidence 445566777778889999999999999988888877423333
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=41.48 E-value=41 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=23.9
Q ss_pred HHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
|+.+....+|.++|.++.+.|.++..++++
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh
Confidence 333444578899999999999999998887
No 81
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=40.41 E-value=18 Score=30.75 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=20.7
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHh
Q 025480 111 AQCLSGEDIDEMRRQGATGEEIVEALIA 138 (252)
Q Consensus 111 ~QkLs~eeI~eLK~~g~~g~eII~~Lve 138 (252)
.|+.|..||+++| |++...+|++|++
T Consensus 94 ~QPiTr~eIe~IR--Gv~s~~~i~~L~e 119 (159)
T PF04079_consen 94 KQPITRAEIEEIR--GVNSDSVIKTLLE 119 (159)
T ss_dssp H-SEEHHHHHHHH--TS--HCHHHHHHH
T ss_pred cCCcCHHHHHHHc--CCChHHHHHHHHH
Confidence 3999999999998 7789999999995
No 82
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=39.01 E-value=72 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHh-CCCceE
Q 025480 205 VAANSDVLVVDMAGGLLTGAVAERL-GGLEDY 235 (252)
Q Consensus 205 V~~g~rvLv~d~~~Gll~aAvleRm-gg~G~i 235 (252)
+.++++||.++.+.|.++.++++++ ...+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v 85 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKI 85 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeE
Confidence 5688999999999999888888875 344555
No 83
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=36.58 E-value=22 Score=31.11 Aligned_cols=25 Identities=48% Similarity=0.639 Sum_probs=18.8
Q ss_pred cCCHHHHH---HHHHcCCChHHHHHHHH
Q 025480 113 CLSGEDID---EMRRQGATGEEIVEALI 137 (252)
Q Consensus 113 kLs~eeI~---eLK~~g~~g~eII~~Lv 137 (252)
+||.++|+ .|++.|++-++||.+|-
T Consensus 4 ~l~~~QieLLqrL~~SG~TK~~ii~ALe 31 (180)
T PF04814_consen 4 KLTIEQIELLQRLRRSGMTKEEIIHALE 31 (180)
T ss_dssp HHHHHHHHHHHHHHHCT--HHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46666666 77899999999999995
No 84
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.25 E-value=1.4e+02 Score=27.57 Aligned_cols=86 Identities=23% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHHHHHhhhccCCcEEEeCCChHHHHHHHhhc--CcchhcCCCHHHHHHHHhhcCC----CCCCeEEEEeCCCcHHHHH
Q 025480 151 QEKYKLKKQKKYAPKVLLRRPFARSICEAYFKK--NPARIGFLRVDMLSLLLSMGNV----AANSDVLVVDMAGGLLTGA 224 (252)
Q Consensus 151 qeKYlkkK~kKyl~~~~vl~Pt~~~l~e~y~~k--~P~Ki~~lR~DtLa~iL~~anV----~~g~rvLv~d~~~Gll~aA 224 (252)
|--|++|-.+-=.- +-|+-|+ -|.-+|.+ +|+|-..--++..-. -|-|+ .+-+-++|+-+-+|.+|+.
T Consensus 133 QiPyi~rAv~~Gyg-viv~N~N---~~~kfye~k~np~kyirt~veh~~y--vw~~~v~pa~~~sv~vvahsyGG~~t~~ 206 (297)
T KOG3967|consen 133 QIPYIKRAVAEGYG-VIVLNPN---RERKFYEKKRNPQKYIRTPVEHAKY--VWKNIVLPAKAESVFVVAHSYGGSLTLD 206 (297)
T ss_pred cChHHHHHHHcCCc-EEEeCCc---hhhhhhhcccCcchhccchHHHHHH--HHHHHhcccCcceEEEEEeccCChhHHH
Confidence 55688877654333 4566665 34445644 675433322222221 12222 4556677777899999999
Q ss_pred HHHHhCCCceE--EecCCCC
Q 025480 225 VAERLGGLEDY--YFLGSFV 242 (252)
Q Consensus 225 vleRmgg~G~i--~~~g~~p 242 (252)
+++|.++.-+| +...|+|
T Consensus 207 l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 207 LVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHhcCCccceEEEEeeccc
Confidence 99999999999 6555654
No 85
>PRK15219 carbonic anhydrase; Provisional
Probab=35.44 E-value=1.1e+02 Score=27.93 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=58.7
Q ss_pred cCCChHHHHHHHHhcccccccchhhcHHHHHHHh---hhccCCcEEEeCC-ChHHHHHHHhhcCcchhcCCC-------H
Q 025480 125 QGATGEEIVEALIANSATFEKKTSFSQEKYKLKK---QKKYAPKVLLRRP-FARSICEAYFKKNPARIGFLR-------V 193 (252)
Q Consensus 125 ~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK---~kKyl~~~~vl~P-t~~~l~e~y~~k~P~Ki~~lR-------~ 193 (252)
..++.++.++.|++++..|...+ |.+..|..++ .+---..+.++-+ ..|.-.+..|...|.-+--+| .
T Consensus 49 ~~~~p~~al~~L~~GN~rF~~~~-~~~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~ 127 (245)
T PRK15219 49 DKMTPDQIIESLKQGNKRFRSGK-PAQHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND 127 (245)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC-cCCchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc
Confidence 45788999999999999998865 3444454322 1233345566655 455556777877775444444 2
Q ss_pred HHHHHH---HhhcCCCCCCeEEEEeCCC-cHHHHHH
Q 025480 194 DMLSLL---LSMGNVAANSDVLVVDMAG-GLLTGAV 225 (252)
Q Consensus 194 DtLa~i---L~~anV~~g~rvLv~d~~~-Gll~aAv 225 (252)
|.+|-| +...+| ..++|+++++ |.+.|++
T Consensus 128 ~~~~slEyAv~~L~v---~~IvVlGHt~CGav~Aa~ 160 (245)
T PRK15219 128 DLLGSMEFACAVAGA---KVVLVMGHTACGAVKGAI 160 (245)
T ss_pred chhhHHHHHHHHcCC---CEEEEecCCcchHHHHHH
Confidence 344433 333444 4788888844 4555554
No 86
>COG4628 Uncharacterized conserved protein [Function unknown]
Probab=34.98 E-value=44 Score=27.49 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHh-----------------------cccccccchhhcHHH----HHHHhh--hcc-CCcEEEeCCChHH
Q 025480 126 GATGEEIVEALIA-----------------------NSATFEKKTSFSQEK----YKLKKQ--KKY-APKVLLRRPFARS 175 (252)
Q Consensus 126 g~~g~eII~~Lve-----------------------nS~tF~~KT~FSqeK----YlkkK~--kKy-l~~~~vl~Pt~~~ 175 (252)
|++-+.|+.+|++ +|-.|=.||.++.|| |+.+-+ ++- ..-|| +.|-+|.
T Consensus 17 GltLE~llt~Lvd~YGWd~L~~ri~inCF~ndPSi~SSlKfLrkT~WARekvEa~Yl~~~~r~~r~~~~~ft-l~~~~r~ 95 (136)
T COG4628 17 GLTLETLLTELVDFYGWDGLATRIRINCFHNDPSIKSSLKFLRKTPWAREKVEALYLYRFKRMPRASSEEFT-LPPRART 95 (136)
T ss_pred cccHHHHHHHHHHHhChHHHHhhceeccccCCccHHHHHHHHhcCHhHHHHHHHHHHHHHHhhhhhcccccc-cChhhhc
Confidence 4566778877775 466788999999998 554422 222 22355 5778888
Q ss_pred HHHHHhhcCc
Q 025480 176 ICEAYFKKNP 185 (252)
Q Consensus 176 l~e~y~~k~P 185 (252)
+-..++++.|
T Consensus 96 ~~~~l~~~~~ 105 (136)
T COG4628 96 FPHGLHPKEP 105 (136)
T ss_pred CccccCcCcc
Confidence 7777777776
No 87
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=34.14 E-value=91 Score=29.10 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=38.4
Q ss_pred hhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHH---HHHhCCCceE-EecC
Q 025480 187 RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAV---AERLGGLEDY-YFLG 239 (252)
Q Consensus 187 Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAv---leRmgg~G~i-~~~g 239 (252)
.=+...++.++.+|.-.+|..+..|+++|..+|+-++-+ +..| |.=.| +-.|
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~-Gh~~V~iLdG 124 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYL-GHENVRILDG 124 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHc-CCCceEEecC
Confidence 345556779999999999999999999999888775544 4444 44445 4444
No 88
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=32.56 E-value=50 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCC----------CCCeEEEEeCCCcHH
Q 025480 193 VDMLSLLLSMGNVA----------ANSDVLVVDMAGGLL 221 (252)
Q Consensus 193 ~DtLa~iL~~anV~----------~g~rvLv~d~~~Gll 221 (252)
.+.-..+|.++++. |++++.|+|.|||+=
T Consensus 141 s~~a~~~L~~~Gipv~reG~~i~lp~~~l~Va~aCSGlr 179 (268)
T TIGR03113 141 SYVAEQILYWAGYPIARSGVILQVGQYQLLVADACAGLH 179 (268)
T ss_pred HHHHHHHHHHcCCCEEEeeeEEEECCeeEEEeccCCcHH
Confidence 34467889999986 689999999999963
No 89
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=32.37 E-value=59 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q 025480 116 GEDIDEMRRQGATGEEIVEAL 136 (252)
Q Consensus 116 ~eeI~eLK~~g~~g~eII~~L 136 (252)
.++|.+|.++|.+-.+|-+.+
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~ 31 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQF 31 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHH
Confidence 589999999999999988865
No 90
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=32.20 E-value=1.2e+02 Score=28.32 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=34.4
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEEeCCCcHHH---HHHHHHhCCCceE-EecC
Q 025480 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLT---GAVAERLGGLEDY-YFLG 239 (252)
Q Consensus 192 R~DtLa~iL~~anV~~g~rvLv~d~~~Gll~---aAvleRmgg~G~i-~~~g 239 (252)
..+.|..+|.-.+|.+..+|+|+|..++.-+ +++++++|=+ +| ++.|
T Consensus 87 ~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~-~V~~LdG 137 (320)
T PLN02723 87 SEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHE-KVWVLDG 137 (320)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCC-ceEEcCC
Confidence 3578999999999999999999987665443 3557777643 45 5554
No 91
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=31.63 E-value=1.4e+02 Score=25.23 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=48.2
Q ss_pred HHHHHHHHhcccccccch----hhcHHHHH--HHhhhccCCcEEEeCCChHHHHHHHhhcCcchhcCCCH-------HHH
Q 025480 130 EEIVEALIANSATFEKKT----SFSQEKYK--LKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRV-------DML 196 (252)
Q Consensus 130 ~eII~~LvenS~tF~~KT----~FSqeKYl--kkK~kKyl~~~~vl~Pt~~~l~e~y~~k~P~Ki~~lR~-------DtL 196 (252)
++.+++|++++..|...+ .++++.|. .++++.+.-.++.. ..|...+..|.-.|..+--+|. +++
T Consensus 2 ~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~--DsRv~~~~i~~~~~Gd~fviRn~gn~v~~~~~ 79 (154)
T cd03378 2 DEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCS--DSRVPPEIIFDQGLGDLFVVRVAGNIVDDDVL 79 (154)
T ss_pred hHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcC--CCCCCHHHHcCCCCCCEEEEeccccccChhHH
Confidence 567888999888887543 22334343 44555554444443 3444445566666644333332 334
Q ss_pred HHHH---hhcCCCCCCeEEEEeCCC-cHHHHH
Q 025480 197 SLLL---SMGNVAANSDVLVVDMAG-GLLTGA 224 (252)
Q Consensus 197 a~iL---~~anV~~g~rvLv~d~~~-Gll~aA 224 (252)
+-+. ..-+| ..++|+++++ |.+.++
T Consensus 80 ~sl~yav~~l~v---~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 80 GSLEYAVEVLGV---PLVVVLGHESCGAVAAA 108 (154)
T ss_pred HHHHHHHHHhCC---CEEEEEcCCCccHHHHH
Confidence 4332 23344 4788888844 444443
No 92
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=31.52 E-value=88 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.013 Sum_probs=39.4
Q ss_pred CHHHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEecCC
Q 025480 192 RVDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGS 240 (252)
Q Consensus 192 R~DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i~~~g~ 240 (252)
..|.-||+-+ ..+..||.+||-+-..-|-=|+.+++.|.++|.+++.-|
T Consensus 140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D 189 (355)
T COG0144 140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVD 189 (355)
T ss_pred EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEc
Confidence 3455677766 779999999998888889999999999999888844443
No 93
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=31.43 E-value=1.6e+02 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=35.0
Q ss_pred CHHHHHHHHhhcCCCCCCeEEEEeCCCcH---HHHHHHHHhCCCceE-EecC
Q 025480 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGL---LTGAVAERLGGLEDY-YFLG 239 (252)
Q Consensus 192 R~DtLa~iL~~anV~~g~rvLv~d~~~Gl---l~aAvleRmgg~G~i-~~~g 239 (252)
+.+.+..++.-.+|.++..|++++++++. .++.+++++|= -.| ++.|
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~-~~v~~l~G 121 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGV-EKVSILAG 121 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcC-CcEEEcCC
Confidence 46889999999999999999999986552 34456777763 345 6654
No 94
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=31.12 E-value=1.4e+02 Score=24.28 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=14.5
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEEeCCCcHH
Q 025480 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLL 221 (252)
Q Consensus 191 lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll 221 (252)
+..+.+-.+-.-.||.| .+-.||||.|=.
T Consensus 84 ~~e~~vr~~R~~~~i~p--~yk~VDTcA~EF 112 (123)
T PF02787_consen 84 VSEEEVRELRKEHGIVP--VYKMVDTCAGEF 112 (123)
T ss_dssp S-HHHHHHHHHHHT-----EEEE--SBTTSS
T ss_pred CCHHHHHHHHHHcCCce--eeeeecCccccc
Confidence 34455555666668887 566789998843
No 95
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=30.56 E-value=73 Score=29.74 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 205 VAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 205 V~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
+.+|.+||-+++++|+|+-|.+ ++|. ++|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~-klGA-~~v 187 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAA-KLGA-KKV 187 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHH-HTTB-SEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHH-HcCC-CeE
Confidence 6889999999999999977764 4654 344
No 96
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=30.53 E-value=47 Score=27.21 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=20.3
Q ss_pred CCCCCccCCCEEEEEeCCCCeEEEEEEe
Q 025480 12 RNAQLTWEGCSVLLDINDGDRLVFARLT 39 (252)
Q Consensus 12 ~~~~~I~eGd~Vll~~~~g~~~~~v~l~ 39 (252)
|+.-.|+.||.|+|+-++ +..++.+|.
T Consensus 3 r~~~~i~vGD~V~v~~~~-~~~~va~Ie 29 (130)
T cd04721 3 RNGVTISVHDFVYVLSEE-EDRYVAYIE 29 (130)
T ss_pred cCCEEEECCCEEEEeCCC-CCcEEEEEE
Confidence 556669999999999765 445677775
No 97
>TIGR00281 segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis.
Probab=30.00 E-value=62 Score=28.29 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.5
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHh
Q 025480 111 AQCLSGEDIDEMRRQGATGEEIVEALIA 138 (252)
Q Consensus 111 ~QkLs~eeI~eLK~~g~~g~eII~~Lve 138 (252)
.|+.|..||+++| |++...+|++|++
T Consensus 99 ~QPITr~eIe~IR--Gv~s~~~l~~L~e 124 (186)
T TIGR00281 99 KQPITRARINEIR--GVKSYQIVDDLVE 124 (186)
T ss_pred cCCcCHHHHHHHc--CCCHHHHHHHHHH
Confidence 3999999999997 5567889999995
No 98
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=29.92 E-value=1.3e+02 Score=28.21 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecCC
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLGS 240 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g~ 240 (252)
|.-+|...++.+|+.|+-+--+.|--+.++++++++.|+| ...-|
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D 53 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRD 53 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC
Confidence 4566777788899877766668889999999999888999 55443
No 99
>PHA03412 putative methyltransferase; Provisional
Probab=29.84 E-value=66 Score=29.40 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCcHHHHHHHHHhC
Q 025480 208 NSDVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 208 g~rvLv~d~~~Gll~aAvleRmg 230 (252)
+.+||.+.+++|.++.+++++|.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~ 72 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMM 72 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcc
Confidence 78999999999999999999874
No 100
>PRK04457 spermidine synthase; Provisional
Probab=29.76 E-value=1.1e+02 Score=27.67 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=19.3
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHh
Q 025480 206 AANSDVLVVDMAGGLLTGAVAERL 229 (252)
Q Consensus 206 ~~g~rvLv~d~~~Gll~aAvleRm 229 (252)
.++.++|+++.++|.++.+++.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC
Confidence 456788999998898888887776
No 101
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=29.52 E-value=1.3e+02 Score=21.84 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCccCCCEEEEEe-CCCCeEEEEEEecCCEEEEceeeeecC-----cccCCCCCcEEEEeCCC
Q 025480 14 AQLTWEGCSVLLDI-NDGDRLVFARLTSGSTLKIGNKNCSLQ-----PLIGCPFGSLFQVDNGK 71 (252)
Q Consensus 14 ~~~I~eGd~Vll~~-~~g~~~~~v~l~~~~~i~lgK~~f~~~-----~lIG~pyG~t~ei~~~~ 71 (252)
...|..|+.|.++. .+++.. -+++..-......++.++.. .|+|+.=|.++++....
T Consensus 3 ~~~V~~Gs~V~l~~~~~~~~~-~~~lv~~~~~~~~~~~IS~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 3 DDVVTIGSTVTLKDLDDGEEE-TYTLVGPDEADPDNGKISIDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSB-STTEEEEEEETTTTEEE-EEEEE-GGG-BSTSTEEETTSHHHHHHTT-BTT-EEEEEETT
T ss_pred CCEEEeCCEEEEEECCCCCEE-EEEEEeEhHhCCceeEEEecCHHHHHhcCCCCCCEEEEEeCC
Confidence 46789999999987 434444 44444222233344555554 58999999999987443
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=29.29 E-value=64 Score=29.56 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhC
Q 025480 189 GFLRVDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 189 ~~lR~DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmg 230 (252)
+.+|+-+=|.+|. ++.+...+|+|.++++.|++.-+++.|-.
T Consensus 25 ~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~ 67 (248)
T COG4123 25 CGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE 67 (248)
T ss_pred CccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC
Confidence 3445555566655 88998899999999999999999999953
No 103
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=29.26 E-value=48 Score=27.60 Aligned_cols=44 Identities=25% Similarity=0.188 Sum_probs=28.7
Q ss_pred CCHHHHH-HHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 191 LRVDMLS-LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 191 lR~DtLa-~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.|.|.-+ .|+.+..-+.+.++|.+++++|.++.+++.+. ..-+|
T Consensus 14 ~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v 58 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKV 58 (170)
T ss_dssp TSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEE
T ss_pred CCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEE
Confidence 3444333 23333333488999999999999999998763 33344
No 104
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=49 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.1
Q ss_pred ccccCCHHHHHHHHHcCCChH-HHHHHH
Q 025480 110 KAQCLSGEDIDEMRRQGATGE-EIVEAL 136 (252)
Q Consensus 110 ~~QkLs~eeI~eLK~~g~~g~-eII~~L 136 (252)
..|.++.+||..||++.+.-. ||-+.|
T Consensus 39 n~~~~s~~ev~~LKKqkL~LKDEi~~~L 66 (72)
T COG2841 39 NRQPGSDAEVSNLKKQKLQLKDEIASIL 66 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHhHHHHHHHH
Confidence 459999999999999987544 444433
No 105
>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
Probab=28.79 E-value=69 Score=30.47 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccccc-----------cchhhcHHHHHHHhhhc
Q 025480 116 GEDIDEMRRQGATGEEIVEALIANSATFE-----------KKTSFSQEKYKLKKQKK 161 (252)
Q Consensus 116 ~eeI~eLK~~g~~g~eII~~LvenS~tF~-----------~KT~FSqeKYlkkK~kK 161 (252)
..+|+.|+++|+|..||-++|=-.++|.. -+-.+||+.|-+.++.|
T Consensus 13 R~~I~~l~~~~~S~reIA~~LgRh~sTIsRElkRn~~~~~Y~a~~A~~~~~~~rrr~ 69 (318)
T COG2826 13 RYEIERLLKAKMSIREIAKQLNRHHSTISRELKRNRTRDIYSAVKAQERYRMLRRRR 69 (318)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCcchhhHHHhcCCccceeeHHHHHHHHHHhhccc
Confidence 34699999999999999999988888754 35678899977655544
No 106
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.09 E-value=96 Score=28.99 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhC
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmg 230 (252)
+..++-..++.||.++|.++.+-|.++-.+|++-|
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~ 95 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG 95 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC
Confidence 67888999999999999999999988888888874
No 107
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=27.94 E-value=1.1e+02 Score=27.32 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=26.0
Q ss_pred HhhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCC
Q 025480 200 LSMGNVAANSDVLVVDMA--GGLLTGAVAERLGGL 232 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~~--~Gll~aAvleRmgg~ 232 (252)
+..+++++|.+++|.+.+ -|+.++.+|..+|..
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~ 189 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE 189 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe
Confidence 345899999999999863 467788888888753
No 108
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=27.66 E-value=26 Score=32.59 Aligned_cols=78 Identities=9% Similarity=-0.036 Sum_probs=48.7
Q ss_pred ccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHhhcC--cchhc
Q 025480 112 QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN--PARIG 189 (252)
Q Consensus 112 QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~l~e~y~~k~--P~Ki~ 189 (252)
|.|+.+||.+||++| |+||......-.-.|-.=|.+... -......+| |||+-|..+ ..+-.
T Consensus 157 ~~l~~~eI~~l~~~g--g~~~t~e~~~~~vvysGDT~~~~~--------~~a~~adlL------IhEaTf~d~~~~~~~g 220 (277)
T TIGR02650 157 GGDDKKEARLLKEEG--GDDFTREEHHKILLIIGDDLAADD--------EEEEGGEEL------IHECCFFDDADDRRKK 220 (277)
T ss_pred cCCCHHHHHHHHHhC--CccccccccCcEEEEeCCCCCCCh--------HHhcCCCEE------EEecccccccccccCC
Confidence 789999999999996 556665555555556666666632 111222222 455544322 12346
Q ss_pred CCCHHHHHHHHhhcCC
Q 025480 190 FLRVDMLSLLLSMGNV 205 (252)
Q Consensus 190 ~lR~DtLa~iL~~anV 205 (252)
++..+.+|.+...+++
T Consensus 221 H~t~~eaa~~A~~a~v 236 (277)
T TIGR02650 221 HAAADDEMEESKKAAG 236 (277)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 7888888888888876
No 109
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=27.34 E-value=57 Score=23.99 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHH
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTG 223 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~a 223 (252)
|+..+....+++|.+++++..+.|+-.+
T Consensus 57 L~~~~~~g~~~~Gd~vl~~~~G~G~~~~ 84 (90)
T PF08541_consen 57 LADALEEGRIKPGDRVLLVGFGAGFSWG 84 (90)
T ss_dssp HHHHHHTTSSCTTEEEEEEEEETTTEEE
T ss_pred HHHHHHcCCCCCCCEEEEEEEEhhheeE
Confidence 6666777789999999999998886443
No 110
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=27.31 E-value=73 Score=26.80 Aligned_cols=50 Identities=32% Similarity=0.565 Sum_probs=32.9
Q ss_pred ccCccccccCcc--cccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC
Q 025480 99 FRDNRAIVDDNK--AQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (252)
Q Consensus 99 ~~dNr~i~Dd~~--~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~P 171 (252)
..-|++|.|.++ ++.| .++|.+|-++|.|-+||++.++ .+|-.++..-+|
T Consensus 45 ~Cq~qsi~~s~a~~A~dm-R~~I~~~l~~G~s~~eI~~~~v----------------------~rYG~~Vl~~Pp 96 (148)
T PF03918_consen 45 VCQNQSIADSNAPIARDM-RREIREMLAEGKSDEEIIDYFV----------------------ERYGEFVLYEPP 96 (148)
T ss_dssp TTTS-CTTT--SHHHHHH-HHHHHHHHHHT--HHHHHHHHH----------------------HHHTTT-EES--
T ss_pred CCCCCchhhcCcHHHHHH-HHHHHHHHHcCCCHHHHHHHHH----------------------HhcCcceeecCC
Confidence 345888888775 3443 6789999999999999999999 488887777555
No 111
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=27.00 E-value=84 Score=28.39 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=25.6
Q ss_pred HHhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCCC
Q 025480 199 LLSMGNVAANSDVLVVDM-AGGLLTGAVAERLGGL 232 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg~ 232 (252)
.+..+++.+|.+|||... .-|++++.++.++|..
T Consensus 155 ~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~ 189 (339)
T cd08239 155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAE 189 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 346688999999999964 2256777788888754
No 112
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=26.88 E-value=1e+02 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=28.2
Q ss_pred cCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHH
Q 025480 189 GFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAV 225 (252)
Q Consensus 189 ~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAv 225 (252)
..|++.....|+.++++++|.++|-...+.|.++..+
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~liea 200 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEA 200 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHH
Confidence 3466666777888999999999998888888665443
No 113
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=26.84 E-value=1e+02 Score=27.28 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.0
Q ss_pred HhhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCC
Q 025480 200 LSMGNVAANSDVLVVDMA--GGLLTGAVAERLGG 231 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~~--~Gll~aAvleRmgg 231 (252)
+..+++++|.+|||.+.+ -|..++.+|..+|-
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~ 165 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI 165 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC
Confidence 455799999999998754 46777778888875
No 114
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=26.83 E-value=40 Score=24.20 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=24.7
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHhccccc
Q 025480 111 AQCLSGEDIDEMRRQGATGEEIVEALIANSATF 143 (252)
Q Consensus 111 ~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF 143 (252)
.|.||.++|..||+.. -+.|=|++|+.+..+|
T Consensus 17 ~~SLsd~~i~~Lr~ev-l~seGV~~LVS~D~~~ 48 (57)
T PF11961_consen 17 WQSLSDEEIARLREEV-LRSEGVRKLVSDDDSF 48 (57)
T ss_pred HHHcChHHHHHHHHHH-hhhHHHHHHcCCCHHH
Confidence 3789999999999886 4455578888776655
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=26.75 E-value=57 Score=29.97 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=33.2
Q ss_pred chhcCCCHHHHHHHHhh-cCCCCCC-eEEEEeCCCcHHHHHHHHHhC
Q 025480 186 ARIGFLRVDMLSLLLSM-GNVAANS-DVLVVDMAGGLLTGAVAERLG 230 (252)
Q Consensus 186 ~Ki~~lR~DtLa~iL~~-anV~~g~-rvLv~d~~~Gll~aAvleRmg 230 (252)
..+.--|+||--.+-.. ..+.... ++|.++|++|.++.+++.+..
T Consensus 87 ~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~ 133 (280)
T COG2890 87 EGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP 133 (280)
T ss_pred CCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc
Confidence 34677788887666553 3555545 699999999999999988753
No 116
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=26.70 E-value=78 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=23.5
Q ss_pred HHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 198 ~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
.++.+.+..+++++|.++.+.|..+..++++
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~ 51 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN 51 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC
Confidence 3444556667888999998889888888876
No 117
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=26.44 E-value=79 Score=29.18 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 199 LLSMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
+...+++++|.+|||... .-|++++.+|..+|.
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~ 212 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGA 212 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 345689999999999964 225667778887764
No 118
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=25.65 E-value=1e+02 Score=28.01 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=35.1
Q ss_pred CHHHHHHHHhhcC---CCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 192 RVDMLSLLLSMGN---VAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 192 R~DtLa~iL~~an---V~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
|-...|.||.-.. |++|++||..+..+|--+.-++.-.| +|.|
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~i 103 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRI 103 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcE
Confidence 3444577776444 68999999999999999999999887 9988
No 119
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=25.00 E-value=2.1e+02 Score=24.16 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCcC-CCCCccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeec-----CcccCCCCCcEEEEeCCC
Q 025480 9 DPIR-NAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSL-----QPLIGCPFGSLFQVDNGK 71 (252)
Q Consensus 9 ~~~~-~~~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~-----~~lIG~pyG~t~ei~~~~ 71 (252)
|+.. +...|.-|.+|.|...+|+..++.=|-|.. +...++.++. ..|+|+.=|.++++....
T Consensus 77 d~~~~~~~~V~~Gs~V~l~d~~~~~~~~~iVgp~e-~d~~~~~IS~~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 77 DYSPQQEGKVFFGAWVEIENEDGEEKRFRIVGPDE-IDGRKGYISIDSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred CCCCCCCCEEEeCCEEEEEECCCCEEEEEEEChHH-hCcCCCeEeccCHHHHHHhCCCCCCEEEEEcCC
Confidence 4433 346799999999988777655442233322 3444444444 358999999999997433
No 120
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=24.96 E-value=43 Score=31.28 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHHHh-hcCC--CCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 196 LSLLLS-MGNV--AANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 196 La~iL~-~anV--~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
.|-||. ..|| +||++||.....+|--+.-+..-+|.+|.|
T Consensus 142 AA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~V 184 (317)
T KOG1596|consen 142 AAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCV 184 (317)
T ss_pred HHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceE
Confidence 455554 5555 699999999999999999999999999999
No 121
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=24.87 E-value=1.1e+02 Score=28.28 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHH----hhhccCCcEEEeCCChHHHHHHHhhcCcchhcCCCHH
Q 025480 119 IDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLK----KQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVD 194 (252)
Q Consensus 119 I~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkk----K~kKyl~~~~vl~Pt~~~l~e~y~~k~P~Ki~~lR~D 194 (252)
-+.|-+.|+..+-++.++-+|-+.= +++-++|+.- -+-++++ -...-+.+.+ -.||++
T Consensus 31 y~~lv~~gv~Selll~~l~rn~s~n----~~~~a~~~qd~ls~~~D~ll~------~~~k~VMm~W----EtpiMh---- 92 (271)
T KOG1709|consen 31 YRRLVEAGVPSELLLFALGRNESPN----ADGNAPYLQDYLSTAEDTLLD------SLGKGVMMRW----ETPIMH---- 92 (271)
T ss_pred HHHHHHcCCchhhhhhccccccCcc----ccccchHHHHHHhhhhhHHHh------hccchhhhhh----hhHHHH----
Confidence 4567788999999999998776653 4555555432 3333222 1111111110 123443
Q ss_pred HHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 195 tLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
.+|-.++ .-|+|||-|+=++|++..++-|+
T Consensus 93 a~A~ai~----tkggrvLnVGFGMgIidT~iQe~ 122 (271)
T KOG1709|consen 93 ALAEAIS----TKGGRVLNVGFGMGIIDTFIQEA 122 (271)
T ss_pred HHHHHHh----hCCceEEEeccchHHHHHHHhhc
Confidence 3333333 56999999999999998887554
No 122
>PRK04280 arginine repressor; Provisional
Probab=24.76 E-value=1.7e+02 Score=24.55 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHHHh--hcCCCCCCeEEEEeC--CCcHHHHHHHHHhCCCceE-EecCC
Q 025480 195 MLSLLLS--MGNVAANSDVLVVDM--AGGLLTGAVAERLGGLEDY-YFLGS 240 (252)
Q Consensus 195 tLa~iL~--~anV~~g~rvLv~d~--~~Gll~aAvleRmgg~G~i-~~~g~ 240 (252)
.|..++. .-.|......+|+-| +.+=++|+++++++-.+-+ +-.|+
T Consensus 74 ~l~~~~~~~v~sv~~~~~~vvikT~pG~A~~va~~iD~~~~~eI~GTIAGd 124 (148)
T PRK04280 74 KLKRALMDSFVKIDGAGNLLVLKTLPGNANSIGALIDNLDWDEILGTICGD 124 (148)
T ss_pred HHHHHHHHHEEEEeeeCCEEEEEcCCChHHHHHHHHHhCCCCCeEEEEecC
Confidence 4555554 456677889999999 5556788889999877655 66664
No 123
>PLN03131 hypothetical protein; Provisional
Probab=24.74 E-value=69 Score=33.34 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHcCCC-hHHHHHHHHh-------cccccccchhhcHHHHHHHhh
Q 025480 113 CLSGEDIDEMRRQGAT-GEEIVEALIA-------NSATFEKKTSFSQEKYKLKKQ 159 (252)
Q Consensus 113 kLs~eeI~eLK~~g~~-g~eII~~Lve-------nS~tF~~KT~FSqeKYlkkK~ 159 (252)
+.+.++|+.|+..|.. ..+|-++-.. ....-+...+|-+.||+.||=
T Consensus 67 ~WtdeEV~~Mk~gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRF 121 (705)
T PLN03131 67 KFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKY 121 (705)
T ss_pred CCCHHHHHHHHHhccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhh
Confidence 5678999999987742 3444443221 112223446788888887653
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=24.26 E-value=1.5e+02 Score=28.76 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=29.4
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCC
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg 231 (252)
...++...++.+|.+||.++++.|.++..++.+.|.
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~ 290 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDV 290 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCC
Confidence 355666677889999999999999988888887753
No 125
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.21 E-value=1.3e+02 Score=26.97 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=25.9
Q ss_pred HhhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCC
Q 025480 200 LSMGNVAANSDVLVVDMAG--GLLTGAVAERLGGL 232 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~~~--Gll~aAvleRmgg~ 232 (252)
+..+++++|.++||.+.++ |..++.++..+|..
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~ 204 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI 204 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE
Confidence 4567899999999998754 56777788888755
No 126
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=24.14 E-value=84 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=26.6
Q ss_pred hcCCCHHHHHHHHhhcCCC----------CCCeEEEEeCCCcH
Q 025480 188 IGFLRVDMLSLLLSMGNVA----------ANSDVLVVDMAGGL 220 (252)
Q Consensus 188 i~~lR~DtLa~iL~~anV~----------~g~rvLv~d~~~Gl 220 (252)
...+-.+.-+.+|.++++. |++++.|+|.|||+
T Consensus 138 Lq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCSGl 180 (267)
T TIGR03109 138 LQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGL 180 (267)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCCCH
Confidence 3445566778899999986 68999999999995
No 127
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=24.12 E-value=1.7e+02 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCCcC-CCCCccCCCEEEEEe-CCCCeEEEEEEecCCEEEEceeeeecC-----cccCCCCCcEEEEeC
Q 025480 8 LDPIR-NAQLTWEGCSVLLDI-NDGDRLVFARLTSGSTLKIGNKNCSLQ-----PLIGCPFGSLFQVDN 69 (252)
Q Consensus 8 ~~~~~-~~~~I~eGd~Vll~~-~~g~~~~~v~l~~~~~i~lgK~~f~~~-----~lIG~pyG~t~ei~~ 69 (252)
+|+.. +.+.+.-|.+|.++. .+|+.. -+++.-.......++.++.. .|+|+.=|.++++..
T Consensus 45 vd~~~~~~d~V~~Gs~V~~~~~~~~~~~-~~~iVg~~Ead~~~~~ISi~SPlG~ALlG~~~Gd~v~v~~ 112 (137)
T PRK05753 45 VPPAEMPADVVTMNSRVRFRDLSSGEER-VRTLVYPADADDSEGQLSVLAPVGAALLGLSVGQSIDWPL 112 (137)
T ss_pred ECCccCCCCEEEeCCEEEEEECCCCCEE-EEEEEChhHcCccCCcCcccCHHHHHHcCCCCCCEEEEEC
Confidence 34443 446789999999987 444444 44554333344444555544 499999999999964
No 128
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=23.98 E-value=2.6e+02 Score=23.21 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=38.0
Q ss_pred CCCcC-CCCCccCCCEEEEEeCCC-CeEEEEEEecCCEEEEceeeeec-----CcccCCCCCcEEEEeCC
Q 025480 8 LDPIR-NAQLTWEGCSVLLDINDG-DRLVFARLTSGSTLKIGNKNCSL-----QPLIGCPFGSLFQVDNG 70 (252)
Q Consensus 8 ~~~~~-~~~~I~eGd~Vll~~~~g-~~~~~v~l~~~~~i~lgK~~f~~-----~~lIG~pyG~t~ei~~~ 70 (252)
+|+.. +...|..|.+|.++..++ +.. .+.+..-.......+.++. ..|+|+.=|.++++...
T Consensus 76 i~~~~~~~~~V~~Gs~V~l~~~~~~~~~-~~~lvg~~e~d~~~~~IS~~SPlG~aLlGk~~Gd~v~~~~p 144 (157)
T PRK00226 76 IDPSKLSGGKVKFGSTVTLKDLDTDEEE-TYQIVGSDEADPKQGKISIESPIARALIGKKVGDTVEVTTP 144 (157)
T ss_pred cCcccCCCCEEecCCEEEEEECCCCCEE-EEEEEChhhcCccCCeeccCChHHHHHhCCCCCCEEEEEcC
Confidence 45443 467899999999987553 333 2333321122233345554 35899999999998743
No 129
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=23.94 E-value=1e+02 Score=27.38 Aligned_cols=34 Identities=29% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHHhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 198 LLLSMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 198 ~iL~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
+.+..+++.+|.+|||+.. .-|++++.+|..+|.
T Consensus 111 ~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~ 145 (280)
T TIGR03366 111 AALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGA 145 (280)
T ss_pred HHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 3455567779999999965 235677777777754
No 130
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.82 E-value=71 Score=27.88 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=32.1
Q ss_pred CccccccCcccccCCHHHHHHHHHcC--------CChHHHHHHHH
Q 025480 101 DNRAIVDDNKAQCLSGEDIDEMRRQG--------ATGEEIVEALI 137 (252)
Q Consensus 101 dNr~i~Dd~~~QkLs~eeI~eLK~~g--------~~g~eII~~Lv 137 (252)
-||.|.|.++|-=.|-||+..|-++| .||++|-..++
T Consensus 16 aNRRLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVL 60 (193)
T COG5394 16 ANRRLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVL 60 (193)
T ss_pred ccchhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHH
Confidence 59999999999999999999999998 47888766543
No 131
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=23.81 E-value=99 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=23.5
Q ss_pred HhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 200 LSMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
...+++++|.+|||... .-|++++.+|..+|.
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~ 216 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGA 216 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 35688999999999864 225667777777764
No 132
>PF15533 Toxin_54: Putative toxin 54
Probab=23.63 E-value=79 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHcCCChHHHHH
Q 025480 113 CLSGEDIDEMRRQGATGEEIVE 134 (252)
Q Consensus 113 kLs~eeI~eLK~~g~~g~eII~ 134 (252)
.||..||+.|++.|....++=+
T Consensus 7 ~l~~~di~~Lk~~G~d~H~lK~ 28 (66)
T PF15533_consen 7 LLTKGDIEKLKKNGIDAHELKR 28 (66)
T ss_pred ccCHhHHHHHHHcCCcHHHHHh
Confidence 4899999999999988777654
No 133
>PLN02950 4-alpha-glucanotransferase
Probab=23.06 E-value=1.9e+02 Score=31.29 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=66.1
Q ss_pred cccCCHHHHHHHH-------------------HcCCChHHHHHHHHhc--ccccccchhhcHHHHHHH------------
Q 025480 111 AQCLSGEDIDEMR-------------------RQGATGEEIVEALIAN--SATFEKKTSFSQEKYKLK------------ 157 (252)
Q Consensus 111 ~QkLs~eeI~eLK-------------------~~g~~g~eII~~Lven--S~tF~~KT~FSqeKYlkk------------ 157 (252)
+-.||.+||+.+- .-|-...+|+++-+.. +.+|.-|.+|+-|+=|..
T Consensus 580 ~~~~s~~el~~~gl~~~~r~~~p~i~~~~l~~~fg~~~~~v~~~~~~~~~~~~y~~k~~~~te~~i~~~~~~~~~~~~~~ 659 (909)
T PLN02950 580 SIPLSQEELEQEGIWDFDRLSRPYIRQEFLQEKFGDRWTEIASNFLNEYQKGCYEFKEDCNTEKKIAAKLKRLAEKSWLL 659 (909)
T ss_pred CCCCCHHHHHhcCCccHhhhccccccHHHHHHHhcccHHHHHHHHHHhcCCCcEEeccccchHHHHHHhhccccccchhh
Confidence 5678888886542 0123345666664432 446888999988877662
Q ss_pred ------------------------hhhccCCcEEEeCCChH-------------HHHHHHhhcCcchhcCCCHHHHHHHH
Q 025480 158 ------------------------KQKKYAPKVLLRRPFAR-------------SICEAYFKKNPARIGFLRVDMLSLLL 200 (252)
Q Consensus 158 ------------------------K~kKyl~~~~vl~Pt~~-------------~l~e~y~~k~P~Ki~~lR~DtLa~iL 200 (252)
...||..+|.+.+.+++ ..-++||.++.+=-..-=...|..|+
T Consensus 660 ~~~~~~~~~l~~l~~~v~~~~d~~~~~~f~pr~~~~~~~s~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~a~~~L~~l~ 739 (909)
T PLN02950 660 EEEEKIRRGLFDLLQNVVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQEDLWRENALKTLPALL 739 (909)
T ss_pred hhHHHHHHHHHHHhhceeEEecCCCCCCcccceecccccchhhcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh
Confidence 23577777777665544 23345566554311111133455565
Q ss_pred hhcCCCCCCeEEEEeCCCcHHHHHHHH
Q 025480 201 SMGNVAANSDVLVVDMAGGLLTGAVAE 227 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~~~Gll~aAvle 227 (252)
+. ++.||++.--|+|...|-.
T Consensus 740 ~~------t~ml~cgEDLG~vp~~v~~ 760 (909)
T PLN02950 740 NS------SDMLACGEDLGLVPACVHP 760 (909)
T ss_pred cC------CceEEEecccCcCccchHH
Confidence 44 4489999999999766544
No 134
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=23.04 E-value=1.6e+02 Score=26.99 Aligned_cols=44 Identities=25% Similarity=0.142 Sum_probs=34.8
Q ss_pred CHHHHHHHHh-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 192 RVDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 192 R~DtLa~iL~-~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
..|.-||+.. ..+..+|.+||-+...-|-=|..+++.|++.|.|
T Consensus 69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i 113 (283)
T PF01189_consen 69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEI 113 (283)
T ss_dssp EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEE
T ss_pred ecccccccccccccccccccccccccCCCCceeeeeecccchhHH
Confidence 3555566655 4588999997777667788899999999999999
No 135
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=22.98 E-value=1.4e+02 Score=18.43 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.7
Q ss_pred HcCCChHHHHHHHHh
Q 025480 124 RQGATGEEIVEALIA 138 (252)
Q Consensus 124 ~~g~~g~eII~~Lve 138 (252)
+.|.|-+++|..+++
T Consensus 20 ~~g~s~s~~ir~ai~ 34 (39)
T PF01402_consen 20 ELGRSRSELIREAIR 34 (39)
T ss_dssp HHTSSHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHH
Confidence 568999999999884
No 136
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=22.77 E-value=1.1e+02 Score=24.32 Aligned_cols=43 Identities=26% Similarity=0.399 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHcCCChHHHHHHHHhccc----------ccccchhhcHHHHHHHh
Q 025480 113 CLSGEDIDEMRRQGATGEEIVEALIANSA----------TFEKKTSFSQEKYKLKK 158 (252)
Q Consensus 113 kLs~eeI~eLK~~g~~g~eII~~LvenS~----------tF~~KT~FSqeKYlkkK 158 (252)
..+.+||+.|+.- |.+...++.+.+. +=..+.+|=++||+.|+
T Consensus 60 ~w~~~ev~~~~~~---GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~ 112 (116)
T PF01412_consen 60 NWSPEEVQRMREG---GNKRANSIWEANSPPPKKPPPSSDQEKREQFIRAKYVEKA 112 (116)
T ss_dssp ---HHHHHHHHHS---HHHHHHHHHTTTSTTTTTHCTTSHHHHHHHHHHHHHTTHT
T ss_pred CCCHHHHHHHHHH---ChHHHHHHHHcCCCCCCCCCCCCcHHHHHHHHHHHHHhhh
Confidence 4889999999766 6777888877772 11245567777776654
No 137
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=22.75 E-value=1e+02 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=26.0
Q ss_pred hcCCCCCCeEEEEeCC--CcHHHHHHHHHhC-CCceE
Q 025480 202 MGNVAANSDVLVVDMA--GGLLTGAVAERLG-GLEDY 235 (252)
Q Consensus 202 ~anV~~g~rvLv~d~~--~Gll~aAvleRmg-g~G~i 235 (252)
.+++++|.+|+|++.+ -|+++..+|..+| |-.+|
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 4789999999999754 4777877888876 44455
No 138
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=22.72 E-value=1.1e+02 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=24.1
Q ss_pred HHhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 199 LLSMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
.+..+++++|.+|||.+. ..|++++.+|..+|.
T Consensus 157 ~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~ 190 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGA 190 (329)
T ss_pred HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC
Confidence 345689999999999985 235566667777764
No 139
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=22.40 E-value=1.8e+02 Score=27.66 Aligned_cols=29 Identities=7% Similarity=-0.097 Sum_probs=23.1
Q ss_pred CCHHHHHHHHhhcCCCCCCeEEEEeCCCc
Q 025480 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGG 219 (252)
Q Consensus 191 lR~DtLa~iL~~anV~~g~rvLv~d~~~G 219 (252)
-|.+.+|.-|...++.+|.+|+++..-+-
T Consensus 45 ~~v~~la~~L~~~g~~~~~~v~i~~~n~~ 73 (517)
T PRK08008 45 EEINRTANLFYSLGIRKGDKVALHLDNCP 73 (517)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 45777888888889999999999966443
No 140
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=22.37 E-value=1.9e+02 Score=25.01 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 204 NVAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 204 nV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
-+.++.+||.++.+.|.++..+++++++ +.+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v 70 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPF-KHI 70 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCC-CeE
Confidence 3567889999999999999999887643 344
No 141
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=22.32 E-value=1.7e+02 Score=22.85 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 205 VAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 205 V~~g~rvLv~d~~~Gll~aAvleR 228 (252)
..++.+||.++.+.|.++-.++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~ 43 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR 43 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh
Confidence 688999999999999888888554
No 142
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=22.32 E-value=82 Score=30.17 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.5
Q ss_pred hhcCCCCCCeEEEEeCC-CcHHHHHHHHHhC
Q 025480 201 SMGNVAANSDVLVVDMA-GGLLTGAVAERLG 230 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~~-~Gll~aAvleRmg 230 (252)
-.+|++||.+|+|++-+ .|.++.-+|..||
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g 190 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMG 190 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 35899999999999985 4677777777777
No 143
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=22.21 E-value=1.6e+02 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHh
Q 025480 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERL 229 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~~~Gll~aAvleRm 229 (252)
+..++.+.++.+|.++|.+.+++|.++.+++.+.
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~ 319 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA 319 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC
Confidence 3456667788899999999999999999998874
No 144
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=22.18 E-value=1.1e+02 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.4
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHh
Q 025480 111 AQCLSGEDIDEMRRQGATGEEIVEALIA 138 (252)
Q Consensus 111 ~QkLs~eeI~eLK~~g~~g~eII~~Lve 138 (252)
.|+.|..||++++ |++...+|.+|++
T Consensus 102 ~qPiTr~eI~~ir--Gv~~~~ii~~L~~ 127 (188)
T PRK00135 102 KQPITRIEIDEIR--GVNSDGALQTLLA 127 (188)
T ss_pred cCCcCHHHHHHHH--CCCHHHHHHHHHH
Confidence 4899999999997 6667899999985
No 145
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=21.97 E-value=1.1e+02 Score=28.39 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=23.5
Q ss_pred HhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 200 LSMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 200 L~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
...+++++|.+|||... .-|++++.+|..+|.
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~ 209 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGA 209 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 45688999999999964 225567777888764
No 146
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=21.96 E-value=1.5e+02 Score=27.32 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=24.8
Q ss_pred hhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCC
Q 025480 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGG 231 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~~~--Gll~aAvleRmgg 231 (252)
..+++++|.+|||.+.++ |+++..+|..+|.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~ 184 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC 184 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC
Confidence 458899999999998644 6777778888875
No 147
>PF15456 Uds1: Up-regulated During Septation
Probab=21.81 E-value=53 Score=26.93 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=26.2
Q ss_pred ccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHH
Q 025480 106 VDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLK 157 (252)
Q Consensus 106 ~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkk 157 (252)
.|...-+-||.||+++||++= ...+.+-++.+.||--.
T Consensus 11 ~ds~~feiLs~eEVe~LKkEl--------------~~L~~R~~~lr~kl~le 48 (124)
T PF15456_consen 11 GDSKEFEILSFEEVEELKKEL--------------RSLDSRLEYLRRKLALE 48 (124)
T ss_pred HHHHcCcccCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 445566889999999999972 23445666666666533
No 148
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=21.74 E-value=70 Score=27.93 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.2
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHh
Q 025480 111 AQCLSGEDIDEMRRQGATGEEIVEALIA 138 (252)
Q Consensus 111 ~QkLs~eeI~eLK~~g~~g~eII~~Lve 138 (252)
.|++|..||+++|-.+ ...+|+.|.+
T Consensus 104 ~QPiTR~eI~~iRGv~--~~~~i~~L~e 129 (184)
T COG1386 104 KQPVTRSEIEEIRGVA--VSQVISTLLE 129 (184)
T ss_pred cCCccHHHHHHHhCcc--HHHHHHHHHH
Confidence 4999999999997554 4449999985
No 149
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=21.59 E-value=1.3e+02 Score=27.06 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.9
Q ss_pred hhcCCCCCCeEEEEeC--CCcHHHHHHHHHhCC
Q 025480 201 SMGNVAANSDVLVVDM--AGGLLTGAVAERLGG 231 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~--~~Gll~aAvleRmgg 231 (252)
..+++++|.+||+... .-|..++.++..+|-
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~ 164 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC 164 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC
Confidence 5789999999999985 446777778888875
No 150
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=21.56 E-value=1.5e+02 Score=24.91 Aligned_cols=32 Identities=34% Similarity=0.550 Sum_probs=23.5
Q ss_pred HHhhcCCCCCCeEEEEeCCC-cHHHHHHHHHhC
Q 025480 199 LLSMGNVAANSDVLVVDMAG-GLLTGAVAERLG 230 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~~~-Gll~aAvleRmg 230 (252)
+...+.+++|.++|+.+.++ |..++.++..+|
T Consensus 126 l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g 158 (271)
T cd05188 126 LRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG 158 (271)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 34455668999999998764 667777777776
No 151
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=21.36 E-value=1.3e+02 Score=28.12 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=25.8
Q ss_pred hhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceE
Q 025480 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGLEDY 235 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~~~-Gll~aAvleRmgg~G~i 235 (252)
..+.+.+|.+|||...+. |.+++.+|.++|- +.+
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~v 212 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERV 212 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEE
Confidence 567889999999996544 6778888888864 445
No 152
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.34 E-value=1.6e+02 Score=28.62 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=49.3
Q ss_pred ccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHhhc----Ccch
Q 025480 112 QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKK----NPAR 187 (252)
Q Consensus 112 QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~l~e~y~~k----~P~K 187 (252)
.+.+++.++.|++.| +.|+.|..-.++....-+ +|+.
T Consensus 132 ~p~~~~Nl~~L~~~G---------------------------------------~~ii~P~~g~la~~~~g~gr~~~~~~ 172 (399)
T PRK05579 132 NPATQRNLATLRSRG---------------------------------------VEIIGPASGRLACGDVGPGRMAEPEE 172 (399)
T ss_pred CHHHHHHHHHHHHCC---------------------------------------CEEECCCCccccCCCcCCCCCCCHHH
Confidence 456788999999888 688888776655332211 3333
Q ss_pred hcCCCHHHHHHHHhhcCCCCCCeEEEEeC---------------CCcHHHHHHHHHhCCCceE
Q 025480 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDM---------------AGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 188 i~~lR~DtLa~iL~~anV~~g~rvLv~d~---------------~~Gll~aAvleRmgg~G~i 235 (252)
|.. .+...|...++ .|-++||-.. ++|.+..++++++-..|.=
T Consensus 173 I~~----~~~~~~~~~~l-~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~ 230 (399)
T PRK05579 173 IVA----AAERALSPKDL-AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD 230 (399)
T ss_pred HHH----HHHHHhhhccc-CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE
Confidence 321 12222322223 5677777766 5888888998888655543
No 153
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=21.30 E-value=1.4e+02 Score=27.22 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480 205 VAANSDVLVVDMAGGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 205 V~~g~rvLv~d~~~Gll~aAvleRmgg~G~i 235 (252)
+.+|.+||.+++++|.++.+++. +|. ++|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~-~g~-~~V 185 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALK-LGA-AKV 185 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH-cCC-CeE
Confidence 56899999999999999887764 543 455
No 154
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=21.23 E-value=1.3e+02 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=24.4
Q ss_pred HHhhcCCCCCCeEEEEeC--CCcHHHHHHHHHhCC
Q 025480 199 LLSMGNVAANSDVLVVDM--AGGLLTGAVAERLGG 231 (252)
Q Consensus 199 iL~~anV~~g~rvLv~d~--~~Gll~aAvleRmgg 231 (252)
+...+++++|.+++|.+. ..|..+..++..+|-
T Consensus 100 ~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~ 134 (293)
T cd05195 100 LVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGA 134 (293)
T ss_pred HHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCC
Confidence 345688999999999864 446677777777764
No 155
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=21.13 E-value=1.5e+02 Score=20.47 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHcCCChHHHHHHHHhccccc
Q 025480 113 CLSGEDIDEMRRQGATGEEIVEALIANSATF 143 (252)
Q Consensus 113 kLs~eeI~eLK~~g~~g~eII~~LvenS~tF 143 (252)
.+|..-+++|.+.|++-++|.+.|..+.-.|
T Consensus 1 ~~s~Ha~~rm~eR~Is~~~I~~~l~~g~i~~ 31 (73)
T PF14076_consen 1 VFSKHARERMQERGISEEDIEDALENGEIIE 31 (73)
T ss_pred CCCHHHHHHHHhCCCCHHHHHHHHhcCeEee
Confidence 3788899999999999999999997655444
No 156
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=21.12 E-value=1.2e+02 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.113 Sum_probs=23.3
Q ss_pred hhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 201 SMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 201 ~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
..+++++|.+|||... .-|+++..+|..+|.
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~ 210 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKA 210 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 5688999999999964 125667777877765
No 157
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.69 E-value=1.8e+02 Score=24.08 Aligned_cols=42 Identities=21% Similarity=0.099 Sum_probs=24.9
Q ss_pred ccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCCCC
Q 025480 17 TWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFG 62 (252)
Q Consensus 17 I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~pyG 62 (252)
|++||+|.|.-+.|....-+++..+ +..+.+-+-..+|.++|
T Consensus 46 I~dGd~V~v~s~~G~~~~~a~v~~~----i~~g~v~~~~~~~~~~G 87 (156)
T cd02783 46 IKDGDWVWVESVNGRVKGQARFTET----VEPGTVWTWNAIGKRPG 87 (156)
T ss_pred CCCCCEEEEEcCCeeEEEEEEECCC----cCCCeEEEEcccccccC
Confidence 8999999999887754433343332 23344444344555555
No 158
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=20.57 E-value=67 Score=32.39 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCC
Q 025480 196 LSLLLSMGNVAANSDVLVVDM-AGGLLTGAVAERLGG 231 (252)
Q Consensus 196 La~iL~~anV~~g~rvLv~d~-~~Gll~aAvleRmgg 231 (252)
+..+.+.++..+|.+|+|++. .-|+.+...|.++|-
T Consensus 153 ~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA 189 (509)
T PRK09424 153 FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGA 189 (509)
T ss_pred CCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 455666778889999999998 459999888888886
No 159
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=20.56 E-value=1e+02 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=19.9
Q ss_pred hcCCCCCCeEEEEeC---CCcHHH--HHHHHHhCC
Q 025480 202 MGNVAANSDVLVVDM---AGGLLT--GAVAERLGG 231 (252)
Q Consensus 202 ~anV~~g~rvLv~d~---~~Gll~--aAvleRmgg 231 (252)
.+.+.+|.||+++|+ ++|=+. ..+++..|+
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCC
Confidence 356789999999999 444333 344555554
No 160
>TIGR03763 exosortase_3 exosortase, cyanobacterial variant. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci and/or different taxonomic lineages. We designate this relatively divergent cyanobacterial type to be type 3. We propose the gene symbol xrtC. This type coexists with a TIGR02602-recognized form in Nostoc sp. PCC 7120.
Probab=20.48 E-value=98 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhhcCCC----------CCCeEEEEeCCCcHH
Q 025480 191 LRVDMLSLLLSMGNVA----------ANSDVLVVDMAGGLL 221 (252)
Q Consensus 191 lR~DtLa~iL~~anV~----------~g~rvLv~d~~~Gll 221 (252)
+-.+.-..+|.++++. |++++-|+|.|+|+=
T Consensus 135 ~tA~~s~~~L~~~G~pV~reG~~I~lp~~~leVa~aCSGLr 175 (260)
T TIGR03763 135 ITAKFSTFILWYLGFDVSLDGVFIQLPTGGVEVVPGCSGLE 175 (260)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeEEEECCceEEEeccCccHH
Confidence 3445567888888885 789999999999963
No 161
>PTZ00118 40S ribosomal protein S4; Provisional
Probab=20.19 E-value=1.9e+02 Score=26.81 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=25.0
Q ss_pred CccCCCEEEEEeCCCCeEEEEEEecCCEEE
Q 025480 16 LTWEGCSVLLDINDGDRLVFARLTSGSTLK 45 (252)
Q Consensus 16 ~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~ 45 (252)
.|+.||+|+|.+++++...+++...|..+-
T Consensus 153 ~ik~~Dtv~i~l~~~kI~~~ikfe~G~l~~ 182 (262)
T PTZ00118 153 DVKVGDSLRLDLETGKVLEFLKFEVGNLVM 182 (262)
T ss_pred cccCCCEEEEECCCCceeeEEecCCCCEEE
Confidence 588999999999988888788888887543
No 162
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=20.08 E-value=1.9e+02 Score=24.74 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCc-----chhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHH
Q 025480 174 RSICEAYFKKNP-----ARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228 (252)
Q Consensus 174 ~~l~e~y~~k~P-----~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleR 228 (252)
..+++.|++..- .-+...|.+.+... ....++.++|.++.+.|.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~ 69 (233)
T PRK05134 13 SALAARWWDPNGEFKPLHRINPLRLNYIREH---AGGLFGKRVLDVGCGGGILSESMARL 69 (233)
T ss_pred HHHHHHHhccCCCcHHHHHhhHHHHHHHHHh---ccCCCCCeEEEeCCCCCHHHHHHHHc
Confidence 346666664433 12333444434333 34567899999999999888777664
No 163
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=20.06 E-value=1.4e+02 Score=29.01 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHhhcCC-CCCCeEEEEeCC-CcHHHHHHHHHhCCCceE
Q 025480 195 MLSLLLSMGNV-AANSDVLVVDMA-GGLLTGAVAERLGGLEDY 235 (252)
Q Consensus 195 tLa~iL~~anV-~~g~rvLv~d~~-~Gll~aAvleRmgg~G~i 235 (252)
|+|+--+.+|+ .||+||||+.++ -|---+=+++|.|.+=.+
T Consensus 66 t~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~ 108 (383)
T COG0075 66 TLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVV 108 (383)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEE
Confidence 46666677776 479999999984 488889999999988777
Done!