BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025481
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
          Length = 312

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 42/61 (68%)

Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
           +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+K
Sbjct: 195 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 254

Query: 189 Y 189
           Y
Sbjct: 255 Y 255


>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
           The Cul3 N- Terminal Domain
 pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
           The Cul3 N- Terminal Domain
          Length = 145

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 42/61 (68%)

Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
           +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+K
Sbjct: 46  ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 105

Query: 189 Y 189
           Y
Sbjct: 106 Y 106


>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
 pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
 pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
 pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
          Length = 172

 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEA 172
           +RSPVF A  ++E EES+   ++I+DV  +  +    ++YT +A
Sbjct: 55  ARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXXCFIYTGKA 98


>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
           Resolution
 pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
           Resolution
          Length = 297

 Score = 32.0 bits (71), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 134 FKAMLDNEMEESRSGTIKISDVSY------DALRAFVNYLYTAEACLDEQLACDLLELAE 187
           F  +L  +  ESRSG +++   S       D + A + Y+YT    +      ++LELA+
Sbjct: 79  FTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELAD 138

Query: 188 KY 189
           ++
Sbjct: 139 RF 140


>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
 pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
          Length = 279

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 134 FKAMLDNEMEESRSGTIKISDVSY------DALRAFVNYLYTAEACLDEQLACDLLELAE 187
           F  +L  +  ESRSG ++    S       D + A + Y YT    +      ++LELA+
Sbjct: 61  FTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTGSVHEVLELAD 120

Query: 188 KY 189
           ++
Sbjct: 121 RF 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,027,151
Number of Sequences: 62578
Number of extensions: 142736
Number of successful extensions: 337
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 7
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)