Query 025481
Match_columns 252
No_of_seqs 284 out of 1631
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 2.6E-21 5.5E-26 186.6 15.9 116 98-222 23-169 (557)
2 PHA02790 Kelch-like protein; P 99.9 9.1E-22 2E-26 186.7 12.0 132 98-239 20-193 (480)
3 KOG4441 Proteins containing BT 99.9 3.2E-21 6.9E-26 186.1 15.6 117 98-222 34-180 (571)
4 PHA03098 kelch-like protein; P 99.9 4.6E-21 9.9E-26 183.7 13.8 116 98-223 7-152 (534)
5 KOG4350 Uncharacterized conser 99.8 7.8E-21 1.7E-25 170.8 10.1 138 98-243 42-222 (620)
6 PF00651 BTB: BTB/POZ domain; 99.8 6.6E-19 1.4E-23 134.1 10.5 101 98-207 8-110 (111)
7 smart00225 BTB Broad-Complex, 99.7 6.4E-17 1.4E-21 116.9 10.1 89 102-200 1-89 (90)
8 KOG2075 Topoisomerase TOP1-int 99.7 5.5E-16 1.2E-20 142.2 14.1 131 98-236 112-247 (521)
9 KOG0783 Uncharacterized conser 99.4 1.9E-12 4.2E-17 125.2 8.7 130 101-237 711-876 (1267)
10 KOG4591 Uncharacterized conser 99.3 2.1E-11 4.6E-16 101.1 9.6 98 98-205 64-163 (280)
11 KOG4682 Uncharacterized conser 99.2 1.4E-10 3E-15 105.0 11.0 116 98-222 67-216 (488)
12 KOG0783 Uncharacterized conser 98.8 7.7E-09 1.7E-13 100.7 5.1 67 98-172 556-634 (1267)
13 KOG0511 Ankyrin repeat protein 98.5 2.9E-07 6.3E-12 83.2 8.5 103 117-220 300-442 (516)
14 KOG2838 Uncharacterized conser 98.3 2.7E-06 5.8E-11 74.2 7.7 84 98-189 128-216 (401)
15 KOG2838 Uncharacterized conser 98.1 6.6E-06 1.4E-10 71.7 7.3 92 115-208 258-388 (401)
16 KOG2716 Polymerase delta-inter 97.7 0.00047 1E-08 59.3 10.1 94 103-207 7-104 (230)
17 PF11822 DUF3342: Domain of un 97.6 0.00018 4E-09 64.4 7.7 97 117-215 13-111 (317)
18 KOG3473 RNA polymerase II tran 97.6 0.00033 7.2E-09 51.9 7.6 72 117-189 26-110 (112)
19 PF02214 BTB_2: BTB/POZ domain 97.4 0.00031 6.8E-09 51.9 5.1 87 103-200 1-94 (94)
20 smart00512 Skp1 Found in Skp1 97.3 0.0017 3.6E-08 49.0 8.1 79 103-189 4-102 (104)
21 PF03931 Skp1_POZ: Skp1 family 97.2 0.0016 3.4E-08 44.6 6.8 57 103-169 3-59 (62)
22 KOG1987 Speckle-type POZ prote 97.0 0.00037 7.9E-09 62.1 2.4 91 117-209 109-202 (297)
23 PF07707 BACK: BTB And C-termi 96.7 0.0094 2E-07 44.0 7.3 41 180-222 2-42 (103)
24 KOG0511 Ankyrin repeat protein 96.7 0.0066 1.4E-07 55.6 7.3 82 99-189 148-229 (516)
25 KOG1724 SCF ubiquitin ligase, 96.1 0.081 1.8E-06 43.3 10.0 90 117-209 14-128 (162)
26 smart00875 BACK BTB And C-term 96.0 0.024 5.2E-07 41.4 6.2 40 181-222 3-42 (101)
27 KOG2714 SETA binding protein S 94.5 0.16 3.5E-06 47.3 7.8 86 103-198 13-102 (465)
28 COG5201 SKP1 SCF ubiquitin lig 93.3 0.73 1.6E-05 36.2 8.2 97 101-209 2-123 (158)
29 KOG1665 AFH1-interacting prote 90.2 1 2.2E-05 38.8 6.5 89 101-200 9-103 (302)
30 KOG2715 Uncharacterized conser 87.9 1.7 3.8E-05 35.7 6.0 104 103-216 23-130 (210)
31 KOG1778 CREB binding protein/P 84.9 0.93 2E-05 41.1 3.4 103 117-222 35-172 (319)
32 KOG3840 Uncharaterized conserv 74.9 6.5 0.00014 35.5 5.2 79 103-189 98-182 (438)
33 PF01466 Skp1: Skp1 family, di 70.2 13 0.00029 26.2 5.1 34 174-209 11-44 (78)
34 PF14835 zf-RING_6: zf-RING of 59.5 3.8 8.2E-05 28.2 0.5 39 29-70 26-64 (65)
35 PF13248 zf-ribbon_3: zinc-rib 57.5 5.1 0.00011 22.2 0.7 22 31-53 2-23 (26)
36 PF02519 Auxin_inducible: Auxi 56.8 42 0.0009 25.1 5.8 57 102-167 40-99 (100)
37 KOG2723 Uncharacterized conser 42.5 69 0.0015 27.6 5.6 80 117-199 17-101 (221)
38 KOG1077 Vesicle coat complex A 42.4 56 0.0012 33.1 5.6 32 158-189 404-435 (938)
39 PF12674 Zn_ribbon_2: Putative 42.2 8.8 0.00019 27.6 0.1 15 46-60 26-40 (81)
40 COG5175 MOT2 Transcriptional r 39.0 27 0.00059 32.0 2.7 36 32-67 39-82 (480)
41 PF13240 zinc_ribbon_2: zinc-r 38.5 15 0.00031 19.8 0.6 19 33-52 1-19 (23)
42 PF13923 zf-C3HC4_2: Zinc fing 35.9 9.1 0.0002 23.0 -0.6 23 29-52 17-39 (39)
43 KOG2075 Topoisomerase TOP1-int 35.4 1.4E+02 0.003 28.9 6.8 44 176-221 220-263 (521)
44 KOG4591 Uncharacterized conser 29.4 1.6E+02 0.0034 25.3 5.5 45 175-222 167-211 (280)
45 PF04360 Serglycin: Serglycin 26.9 34 0.00074 27.3 1.1 30 13-42 90-119 (150)
46 cd01413 SIR2_Af2 SIR2_Af2: Arc 24.3 85 0.0018 26.7 3.3 23 100-128 171-193 (222)
47 smart00259 ZnF_A20 A20-like zi 24.2 31 0.00068 19.2 0.4 22 33-54 3-26 (26)
48 PF14260 zf-C4pol: C4-type zin 24.1 89 0.0019 21.4 2.8 40 34-73 1-40 (73)
49 PLN03090 auxin-responsive fami 24.0 2E+02 0.0043 21.8 4.8 56 103-167 45-103 (104)
50 KOG4080 Mitochondrial ribosoma 22.8 69 0.0015 26.3 2.2 25 31-57 93-117 (176)
51 KOG4611 Uncharacterized conser 22.6 30 0.00065 32.1 0.1 27 32-58 98-124 (747)
52 COG3404 Methenyl tetrahydrofol 21.6 25 0.00055 29.6 -0.5 32 7-38 15-47 (208)
53 PRK04023 DNA polymerase II lar 20.6 53 0.0012 34.5 1.4 37 12-48 599-646 (1121)
54 PF14445 Prok-RING_2: Prokaryo 20.3 37 0.00081 22.2 0.2 7 32-38 31-37 (57)
55 cd01408 SIRT1 SIRT1: Eukaryoti 20.1 1.4E+02 0.003 25.7 3.8 21 100-126 175-195 (235)
56 TIGR03826 YvyF flagellar opero 20.1 1E+02 0.0023 24.4 2.7 28 32-59 4-31 (137)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.87 E-value=2.6e-21 Score=186.63 Aligned_cols=116 Identities=18% Similarity=0.337 Sum_probs=105.8
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCC-cceEEecCCCHHHHHHHHHHHhcCcccCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESR-SGTIKISDVSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~-~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~ 176 (252)
..+|||+|+|++ ++.|+|||+|||++|+||++||.++++|.. +..|.|.++++++|+.+|+|+|||. ++.
T Consensus 23 ~~l~DV~L~v~~-------~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~ 93 (557)
T PHA02713 23 DILCDVIITIGD-------GEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISS 93 (557)
T ss_pred CCCCCEEEEeCC-------CCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCH
Confidence 569999999973 689999999999999999999999999864 7899999999999999999999997 689
Q ss_pred HHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 177 QLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 177 ~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
+++.+||.+|++| .+.+..|.+.|.+||.+||.++.++++|..|+.
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~ 169 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVF 169 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCH
Confidence 9999999999999 455667889999999999999999999998875
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.86 E-value=9.1e-22 Score=186.74 Aligned_cols=132 Identities=15% Similarity=0.211 Sum_probs=113.5
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEe--cCCCHHHHHHHHHHHhcCcccCC
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKI--SDVSYDALRAFVNYLYTAEACLD 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l--~dvs~~~f~~lL~ylYtg~~~~~ 175 (252)
..||||+++++ +.|+|||+|||+.||||++||++++.|+.+ .|.+ .++++++|+.+|+|+|||++.++
T Consensus 20 ~~~~~~~~~~~---------~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 20 KKFKTIIEAIG---------GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred hhhceEEEEcC---------cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEe
Confidence 56999999985 799999999999999999999999999864 4555 38999999999999999999999
Q ss_pred hHHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCc--hhHHhhhhh
Q 025481 176 EQLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKC--EEYRELVEK 223 (252)
Q Consensus 176 ~~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~--e~f~~L~~~ 223 (252)
.+++.+|+.+|++| .|+++.|.+.|.+||.+||.++.++ ++|..|+..
T Consensus 90 ~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~ 169 (480)
T PHA02790 90 SHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMK 169 (480)
T ss_pred cccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHH
Confidence 99999999999998 7999999999999999999999986 889876541
Q ss_pred ------Ch--HHHHHHHHHHHhcc
Q 025481 224 ------DP--RLVVEIYEAYLSKQ 239 (252)
Q Consensus 224 ------~~--~l~~ell~~l~~~~ 239 (252)
+. .-..++++++++|-
T Consensus 170 ~lLssd~L~v~~Ee~V~eav~~Wl 193 (480)
T PHA02790 170 LILESDELNVPDEDYVVDFVIKWY 193 (480)
T ss_pred HhcccccCCCccHHHHHHHHHHHH
Confidence 11 11446777777663
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.86 E-value=3.2e-21 Score=186.09 Aligned_cols=117 Identities=31% Similarity=0.464 Sum_probs=113.5
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|.++ +++|+|||.|||+.||||++||.+.++|+.+..|.|.++++.+++.+|+|+|||.+.++.+
T Consensus 34 ~~lcDv~L~v~--------~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~ 105 (571)
T KOG4441|consen 34 GLLCDVTLLVG--------DREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED 105 (571)
T ss_pred CCCceEEEEEC--------CeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence 67999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 178 LACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 178 ~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
++.+|+.+|..| .|++.+|.+.+..||.+||.++.+.++|..|+.
T Consensus 106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~ 180 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSL 180 (571)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCH
Confidence 999999999999 688999999999999999999999999999886
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.85 E-value=4.6e-21 Score=183.73 Aligned_cols=116 Identities=22% Similarity=0.391 Sum_probs=107.7
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..||||+|++..+ +++|+|||.||+++|+||++||.++|. +..|.|.+ ++++|+.+|+|+|||++.++.+
T Consensus 7 ~~~~Dv~l~~~~~------~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~ 76 (534)
T PHA03098 7 QKFCDESIIIVNG------GGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSN 76 (534)
T ss_pred CCCCCEEEEEEcC------CEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHH
Confidence 5699999998211 899999999999999999999999887 57899999 9999999999999999999999
Q ss_pred HHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhhh
Q 025481 178 LACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVEK 223 (252)
Q Consensus 178 ~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~~ 223 (252)
++.+|+.+|++| .|++..|.+.|.+||..||.++.++++|..|+.+
T Consensus 77 ~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~ 152 (534)
T PHA03098 77 NVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKN 152 (534)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHH
Confidence 999999999999 7999999999999999999999999999999863
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.84 E-value=7.8e-21 Score=170.78 Aligned_cols=138 Identities=28% Similarity=0.472 Sum_probs=123.3
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccC---
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL--- 174 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~--- 174 (252)
..++||+|+|+ +++|+|||.|||+||.|||+|+.++|.|+.+..|+|.+...++|+.+|+|||||++.+
T Consensus 42 e~y~DVtfvve--------~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 42 EDYSDVTFVVE--------DTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred CcccceEEEEe--------ccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccc
Confidence 56899999999 8999999999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhhhC
Q 025481 175 DEQLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKD 224 (252)
Q Consensus 175 ~~~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~~~ 224 (252)
..+...++|.+|.+| .|+..+|.+.|+.|+.+|..+++..+.|..|+++.
T Consensus 114 ~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~s 193 (620)
T KOG4350|consen 114 EEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDS 193 (620)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHH
Confidence 457789999999999 78999999999999999999999999999998753
Q ss_pred hH----------HHHHHHHHHHhcccccc
Q 025481 225 PR----------LVVEIYEAYLSKQVNTA 243 (252)
Q Consensus 225 ~~----------l~~ell~~l~~~~~~~~ 243 (252)
.. ..++|+-++.+|..+..
T Consensus 194 L~e~l~RDsFfApE~~IFlAv~~W~~~Ns 222 (620)
T KOG4350|consen 194 LKELLARDSFFAPELKIFLAVRSWHQNNS 222 (620)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHhcCc
Confidence 32 14567777777765554
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=6.6e-19 Score=134.06 Aligned_cols=101 Identities=30% Similarity=0.531 Sum_probs=91.0
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCc-cccCCcceEEecCCCHHHHHHHHHHHhcCcccCC-
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE-MEESRSGTIKISDVSYDALRAFVNYLYTAEACLD- 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~-~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~- 175 (252)
..++|++|.+++ +..|+|||.||+++|+||++||.+. +.+.....|.++++++++|+.+|+|+|+|.+.++
T Consensus 8 ~~~~D~~i~v~d-------~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 8 NEFSDVTIRVGD-------GKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp TTS--EEEEETT-------TEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred CCCCCEEEEECC-------CEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 468999999994 6999999999999999999999998 5666667899999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 176 EQLACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 176 ~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
.+++.+++.+|++| +++.|.+.|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~--~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKL--QIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHT--TBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHHHHHHHHHHHHhC
Confidence 99999999999999 9999999999999876
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.71 E-value=6.4e-17 Score=116.89 Aligned_cols=89 Identities=39% Similarity=0.569 Sum_probs=84.0
Q ss_pred cEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChHHHHH
Q 025481 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACD 181 (252)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~~~~~ 181 (252)
||+|.++ ++.|++||.+|+++|+||++||.+.+.+.....|.++++++.+|+.+|+|+|++.+.++..++..
T Consensus 1 dv~i~v~--------~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~ 72 (90)
T smart00225 1 DVTLVVG--------GKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEE 72 (90)
T ss_pred CeEEEEC--------CEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHH
Confidence 7889998 89999999999999999999999988877788999999999999999999999999999999999
Q ss_pred HHHHHHHhhhchHHHHHHH
Q 025481 182 LLELAEKYQHNAKQLLEAA 200 (252)
Q Consensus 182 ll~~A~~y~~~~~~L~~~c 200 (252)
++.+|++| +++.|.+.|
T Consensus 73 l~~~a~~~--~~~~l~~~c 89 (90)
T smart00225 73 LLELADYL--QIPGLVELC 89 (90)
T ss_pred HHHHHHHH--CcHHHHhhh
Confidence 99999999 999998877
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.68 E-value=5.5e-16 Score=142.18 Aligned_cols=131 Identities=29% Similarity=0.417 Sum_probs=112.8
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
...+||.|+|++. .+..++|||||.||+..|.+|.+||.+++.+....+|.++|+.|.+|..+|+|||++.+.+..+
T Consensus 112 ~~~adv~fivg~~---~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~d 188 (521)
T KOG2075|consen 112 ELLADVHFIVGEE---DGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAAD 188 (521)
T ss_pred cccceeEEEeccC---CCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHH
Confidence 5679999999942 2225899999999999999999999999999878999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh-----hChHHHHHHHHHHH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE-----KDPRLVVEIYEAYL 236 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~-----~~~~l~~ell~~l~ 236 (252)
+++.++.+|++| .+..|.+.|++||..+. ....+|..|.+ +.|+++.-+++.+.
T Consensus 189 tvi~tl~~AkKY--~VpaLer~CVkflr~~l---~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 189 TVITTLYAAKKY--LVPALERQCVKFLRKNL---MADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 999999999999 99999999999998874 34556666665 56777666666554
No 9
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.35 E-value=1.9e-12 Score=125.18 Aligned_cols=130 Identities=22% Similarity=0.349 Sum_probs=105.7
Q ss_pred ccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHh-cCcccC-----
Q 025481 101 TDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLY-TAEACL----- 174 (252)
Q Consensus 101 sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylY-tg~~~~----- 174 (252)
-|+.|...+ |+.|+|||++|++|++||..||...|.|+..-.+.+..+..+.+..+|+|+| +++..+
T Consensus 711 ~d~~i~~KD-------Gkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 711 MDTVIKLKD-------GKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred eeEEEEecC-------CcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccc
Confidence 366666664 8999999999999999999999999999887666666777999999999999 455433
Q ss_pred ChHHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhhhC
Q 025481 175 DEQLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKD 224 (252)
Q Consensus 175 ~~~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~~~ 224 (252)
..+.+.+++.+|+.| .|++++|+..|++||..|+..++......++.-..
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~ 863 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFH 863 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchH
Confidence 346677788888777 78999999999999999999998776666665555
Q ss_pred hHHHHHHHHHHHh
Q 025481 225 PRLVVEIYEAYLS 237 (252)
Q Consensus 225 ~~l~~ell~~l~~ 237 (252)
..-+.+-++++++
T Consensus 864 LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 864 LKKLAQRYRKMLS 876 (1267)
T ss_pred HHHHHHHHHHHhh
Confidence 5556777777776
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.28 E-value=2.1e-11 Score=101.12 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=75.1
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccC--C
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL--D 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~--~ 175 (252)
..|+|++|.++++. .+.++|||.|||+||.+++ |.+... ..+....+.|+++++|...++||||+++++ .
T Consensus 64 ~qfSDlk~K~~gns-----~k~i~AHKfVLAARsD~Wk--faN~~d-ekse~~~~dDad~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 64 EQFSDLKFKFAGNS-----DKHIPAHKFVLAARSDFWK--FANGGD-EKSEELDLDDADFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred ccccceeEEecCCc-----cccCchhhhhhhhhcchhh--hccCCC-cchhhhcccccCHHHHHHhheeeeccccccccc
Confidence 57999999998321 6899999999999999986 333222 234567788999999999999999999987 4
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 025481 176 EQLACDLLELAEKYQHNAKQLLEAALSLIT 205 (252)
Q Consensus 176 ~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~ 205 (252)
...+.+|..+|..| ..+.|++.|.+-+.
T Consensus 136 D~~L~el~e~An~F--qLe~Lke~C~k~l~ 163 (280)
T KOG4591|consen 136 DEFLLELCELANRF--QLELLKERCEKGLG 163 (280)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 56678888888888 55555555555443
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.19 E-value=1.4e-10 Score=105.00 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=103.7
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEec----CCCHHHHHHHHHHHhcCccc
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKIS----DVSYDALRAFVNYLYTAEAC 173 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~----dvs~~~f~~lL~ylYtg~~~ 173 (252)
..-+||++.+- |.+...||..| ..|+||++||.+.|+|+....|.|. .|+..+|..++.-+|.+++.
T Consensus 67 ~enSDv~l~al--------g~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 67 GENSDVILEAL--------GFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred CCCcceehhhc--------cceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 34699999988 89999999999 7899999999999999999887764 58999999999999999999
Q ss_pred CChHHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 174 LDEQLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 174 ~~~~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
|..+.+..++.+|..+ .|+...+++.|++++..|+-.+....-+.+++.
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 9999999999999888 889999999999999999888877666666653
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.76 E-value=7.7e-09 Score=100.73 Aligned_cols=67 Identities=25% Similarity=0.426 Sum_probs=55.4
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCc------------ceEEecCCCHHHHHHHHH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRS------------GTIKISDVSYDALRAFVN 165 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~------------~~I~l~dvs~~~f~~lL~ 165 (252)
..+.||+|.|| +..|+|||.||++||++|+.+|...-+.+.. ..|.+.++.|..|+.+|.
T Consensus 556 ds~hDVtf~vg--------~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~ 627 (1267)
T KOG0783|consen 556 DSFHDVTFYVG--------TSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLH 627 (1267)
T ss_pred cccceEEEEec--------CeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHH
Confidence 46789999999 8999999999999999999999654332222 245577899999999999
Q ss_pred HHhcCcc
Q 025481 166 YLYTAEA 172 (252)
Q Consensus 166 ylYtg~~ 172 (252)
||||+..
T Consensus 628 ~iYtdt~ 634 (1267)
T KOG0783|consen 628 YIYTDTL 634 (1267)
T ss_pred HHhcccc
Confidence 9999854
No 13
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.55 E-value=2.9e-07 Score=83.18 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=79.4
Q ss_pred CceEehhHHHHhhccHHHHHhhcCccccCC-c---ceEEecCCCHHHHHHHHHHHhcCcccCChHHHHHHHHHHHHh---
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESR-S---GTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKY--- 189 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~~~e~~-~---~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~~~~~ll~~A~~y--- 189 (252)
..++|||.+++ .|.+||+.||.+++.|+. . ....++.....+++.+++|+|+++.++.++-+.+++.+|+++
T Consensus 300 ~~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 300 EDRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred cccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 36799999999 788999999999999854 2 235566778899999999999999999999999999888887
Q ss_pred ---------------------hhch------------HHHHHHHHHHHHHhHHHHhCchhHHhh
Q 025481 190 ---------------------QHNA------------KQLLEAALSLITDNMDKLTKCEEYREL 220 (252)
Q Consensus 190 ---------------------~~~~------------~~L~~~c~~~i~~~~~~v~~~e~f~~L 220 (252)
.|++ ..|...+..|++.|+..+...+++...
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 3333 344555556666666666666666543
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.28 E-value=2.7e-06 Score=74.16 Aligned_cols=84 Identities=29% Similarity=0.412 Sum_probs=65.7
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCc--ceEEecCCCHHHHHHHHHHHhcCcccCC
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRS--GTIKISDVSYDALRAFVNYLYTAEACLD 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~--~~I~l~dvs~~~f~~lL~ylYtg~~~~~ 175 (252)
....|+-|+.. ...|+|||++|++|+|+|+.+.+........ -.|..-+++.++|+++|+|+|||+.-..
T Consensus 128 k~c~dldiiFk--------eTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmE 199 (401)
T KOG2838|consen 128 KVCGDLDIIFK--------ETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGME 199 (401)
T ss_pred eeeccceeeee--------eccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchh
Confidence 44578888888 7899999999999999999988764322222 2466668999999999999999987653
Q ss_pred ---hHHHHHHHHHHHHh
Q 025481 176 ---EQLACDLLELAEKY 189 (252)
Q Consensus 176 ---~~~~~~ll~~A~~y 189 (252)
-+++.-|..++.-|
T Consensus 200 d~~fqn~diL~QL~edF 216 (401)
T KOG2838|consen 200 DLGFQNSDILEQLCEDF 216 (401)
T ss_pred hcCCchHHHHHHHHHhh
Confidence 36676677788777
No 15
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.15 E-value=6.6e-06 Score=71.74 Aligned_cols=92 Identities=25% Similarity=0.337 Sum_probs=65.5
Q ss_pred CCCceEehhHHHHhhccHHHHHhhcCccccCC---------cceEEecC-CCHHHH-HHHHHHHhcCcccCCh-------
Q 025481 115 GPAVPVPAHKAVLVSRSPVFKAMLDNEMEESR---------SGTIKISD-VSYDAL-RAFVNYLYTAEACLDE------- 176 (252)
Q Consensus 115 ~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~---------~~~I~l~d-vs~~~f-~~lL~ylYtg~~~~~~------- 176 (252)
.++.++.|||+|.++||++||.++.....+.. ...|.+.+ |=|.+| -.+|.+|||+.++++.
T Consensus 258 c~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~S 337 (401)
T KOG2838|consen 258 CEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDS 337 (401)
T ss_pred chhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcc
Confidence 33578999999999999999999855433222 23466654 445555 4678999999876521
Q ss_pred ---------------------HHHHHHHHHHHHhhhchHHHHHHHHHHHHHhH
Q 025481 177 ---------------------QLACDLLELAEKYQHNAKQLLEAALSLITDNM 208 (252)
Q Consensus 177 ---------------------~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~ 208 (252)
..+.+|+.+|..| ....|...|...|..+.
T Consensus 338 igSLSeakAitnaGkpn~~qaaeAleL~~IAlFf--EfemLaQa~e~Vir~ac 388 (401)
T KOG2838|consen 338 IGSLSEAKAITNAGKPNDLQAAEALELIEIALFF--EFEMLAQACEDVIRKAC 388 (401)
T ss_pred cccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh
Confidence 5566777777777 77788888888777654
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00047 Score=59.35 Aligned_cols=94 Identities=28% Similarity=0.320 Sum_probs=79.1
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccc--cCCcceEEecCCCHHHHHHHHHHHhcCcccCC--hHH
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME--ESRSGTIKISDVSYDALRAFVNYLYTAEACLD--EQL 178 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~--e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~--~~~ 178 (252)
|.|-|| |..|...|.-|.-...+|++|+...+. ...++-|-| |=+|.-|..+|.||-.|.+.++ ...
T Consensus 7 vkLnvG--------G~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~ke 77 (230)
T KOG2716|consen 7 VKLNVG--------GTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKE 77 (230)
T ss_pred EEEecC--------CeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHH
Confidence 457788 899999999999999999999998763 223344555 6799999999999998887774 577
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 179 ACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 179 ~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
+.+|+.=|.+| .+..|.+.|..-|...
T Consensus 78 l~El~~EA~fY--lL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 78 LKELLREAEFY--LLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHh--hHHHHHHHHHHHhhhc
Confidence 88999999999 9999999999977755
No 17
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.64 E-value=0.00018 Score=64.39 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=82.2
Q ss_pred CceEehhHHHHhhccHHHHHhhcCcccc-CCcceEEec-CCCHHHHHHHHHHHhcCcccCChHHHHHHHHHHHHhhhchH
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEE-SRSGTIKIS-DVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAK 194 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~~~e-~~~~~I~l~-dvs~~~f~~lL~ylYtg~~~~~~~~~~~ll~~A~~y~~~~~ 194 (252)
.+.|.+.+.+|...=.||+..+.....+ .....|.|. ..+..+|+-+++|+....-.++..|+..++.-++++ .++
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL--~M~ 90 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFL--QME 90 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhh--ccH
Confidence 6789999999999999999999542111 222345554 467899999999999988888999999999999999 999
Q ss_pred HHHHHHHHHHHHhHHHHhCch
Q 025481 195 QLLEAALSLITDNMDKLTKCE 215 (252)
Q Consensus 195 ~L~~~c~~~i~~~~~~v~~~e 215 (252)
.|.+.|+.|+..|+.+++.++
T Consensus 91 ~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 91 SLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred HHHHHHHHHHHHhHHHHHcCC
Confidence 999999999999999998755
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.63 E-value=0.00033 Score=51.85 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=60.3
Q ss_pred CceEehhHHHHhhccHHHHHhhcCc--cccCCcceEEecCCCHHHHHHHHHHH-----hcCc------ccCChHHHHHHH
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNE--MEESRSGTIKISDVSYDALRAFVNYL-----YTAE------ACLDEQLACDLL 183 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~--~~e~~~~~I~l~dvs~~~f~~lL~yl-----Ytg~------~~~~~~~~~~ll 183 (252)
+.+|-.-|-+ |.-|+-.|+||.++ +.+...++|.+.++...+++.+.+|+ |++. .+|+++.+.+||
T Consensus 26 dhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL 104 (112)
T KOG3473|consen 26 DHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELL 104 (112)
T ss_pred CcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHH
Confidence 7888777664 57899999999987 55666789999999999999999998 4443 356789999999
Q ss_pred HHHHHh
Q 025481 184 ELAEKY 189 (252)
Q Consensus 184 ~~A~~y 189 (252)
.+|+++
T Consensus 105 ~aAn~L 110 (112)
T KOG3473|consen 105 MAANYL 110 (112)
T ss_pred HHhhhh
Confidence 999987
No 19
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.40 E-value=0.00031 Score=51.86 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=64.3
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHh-hccHHHHHhhcCc---cccCCcceEEecCCCHHHHHHHHHHHhc-CcccCC-h
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLV-SRSPVFKAMLDNE---MEESRSGTIKISDVSYDALRAFVNYLYT-AEACLD-E 176 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILa-arS~~F~~mf~~~---~~e~~~~~I~l~dvs~~~f~~lL~ylYt-g~~~~~-~ 176 (252)
|+|.|| |+.|.+-+..|. ....+|.+|+... ........+-| |=+|..|+.+|+|+-+ +.+..+ .
T Consensus 1 V~lNVG--------G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~ 71 (94)
T PF02214_consen 1 VRLNVG--------GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDE 71 (94)
T ss_dssp EEEEET--------TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TT
T ss_pred CEEEEC--------CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCc
Confidence 678899 999999999998 5457999999864 33344566666 6799999999999999 666664 5
Q ss_pred HHHHHHHHHHHHhhhchHHH-HHHH
Q 025481 177 QLACDLLELAEKYQHNAKQL-LEAA 200 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L-~~~c 200 (252)
.....++.-|.+| +...| .+.|
T Consensus 72 ~~~~~l~~Ea~fy--~l~~l~i~~c 94 (94)
T PF02214_consen 72 ICLEELLEEAEFY--GLDELFIEDC 94 (94)
T ss_dssp S-HHHHHHHHHHH--T-HHHHBHHC
T ss_pred hhHHHHHHHHHHc--CCCccccCCC
Confidence 6678889999999 88777 4443
No 20
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.29 E-value=0.0017 Score=49.05 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=59.5
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccC-CcceEEecCCCHHHHHHHHHHHhcCccc--------
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEES-RSGTIKISDVSYDALRAFVNYLYTAEAC-------- 173 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~-~~~~I~l~dvs~~~f~~lL~ylYtg~~~-------- 173 (252)
|+|+..+ |..|.+.+.+. ..|..++.|+.+...+. ....|+|++|+..+++.+++|++...-.
T Consensus 4 v~L~S~D-------g~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~ 75 (104)
T smart00512 4 IKLISSD-------GEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKD 75 (104)
T ss_pred EEEEeCC-------CCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccc
Confidence 5566554 89999999987 79999999997643221 2258999999999999999999743210
Q ss_pred -----------CChHHHHHHHHHHHHh
Q 025481 174 -----------LDEQLACDLLELAEKY 189 (252)
Q Consensus 174 -----------~~~~~~~~ll~~A~~y 189 (252)
++.+.+.+|+.+|.++
T Consensus 76 ~~~~wD~~F~~~d~~~l~dLl~AAnyL 102 (104)
T smart00512 76 DIPTWDAEFLKIDQETLFELILAANYL 102 (104)
T ss_pred cccHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446788888888876
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.25 E-value=0.0016 Score=44.61 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=45.6
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhc
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYT 169 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYt 169 (252)
|+|+..+ |+.|.+.+.++ ..|..++.|+.+...+.. .|.|++|+..+++.+++|++.
T Consensus 3 v~L~SsD-------g~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSD-------GQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETT-------SEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCC-------CCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 4566654 89999999988 699999999976433322 899999999999999999964
No 22
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00037 Score=62.08 Aligned_cols=91 Identities=24% Similarity=0.256 Sum_probs=67.8
Q ss_pred CceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChHHHH---HHHHHHHHhhhch
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLAC---DLLELAEKYQHNA 193 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~~~~---~ll~~A~~y~~~~ 193 (252)
+..+.+|+.+++++|++|+.|+..+..+.....+.+.+.++..++.+..|.|+..-........ .++..|.+| ..
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~--~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKY--KN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcccc--cc
Confidence 5669999999999999999999887666666667888999999999999999865443333332 555566666 66
Q ss_pred HHHHHHHHHHHHHhHH
Q 025481 194 KQLLEAALSLITDNMD 209 (252)
Q Consensus 194 ~~L~~~c~~~i~~~~~ 209 (252)
..|+..|...+.....
T Consensus 187 ~~lk~~~~~~l~~~~~ 202 (297)
T KOG1987|consen 187 RHLKLACMPVLLSLIE 202 (297)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666664433
No 23
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.67 E-value=0.0094 Score=44.04 Aligned_cols=41 Identities=37% Similarity=0.586 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 180 CDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 180 ~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
..++..|..| ++..|.+.|.+||..||.++..+++|.+|+.
T Consensus 2 ~~i~~~A~~~--~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~ 42 (103)
T PF07707_consen 2 LSIYRLAEKY--GLEELAEACLRFIAKNFNEVSKSDEFLELPF 42 (103)
T ss_dssp HHHHHHHHHT--T-HHHHHHHHHHHHHTHHHHTTSHHHHCS-H
T ss_pred hhHHHHHHHc--ChHHHHHHHHHHHHHHHHHHccchhhhcCCH
Confidence 4688999999 9999999999999999999999999999985
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.65 E-value=0.0066 Score=55.56 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=60.7
Q ss_pred ccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChHH
Q 025481 99 CYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQL 178 (252)
Q Consensus 99 ~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~~ 178 (252)
...|+++.+.. |..|.|||..|++||.+|..-+...+. ...+|.-..+-+.+|..|++|+|-..-.+-.+.
T Consensus 148 ~~~di~f~~q~-------g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~~q 218 (516)
T KOG0511|consen 148 CCHDIDFLQQE-------GANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQ 218 (516)
T ss_pred cccchHHHhhc-------cccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhH
Confidence 34688888875 788999999999999988765544332 223454446778999999999998744444445
Q ss_pred HHHHHHHHHHh
Q 025481 179 ACDLLELAEKY 189 (252)
Q Consensus 179 ~~~ll~~A~~y 189 (252)
-..|+.+..+|
T Consensus 219 ynallsi~~kF 229 (516)
T KOG0511|consen 219 YNALLSIEVKF 229 (516)
T ss_pred HHHHHhhhhhc
Confidence 57788888888
No 25
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.081 Score=43.30 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=70.6
Q ss_pred CceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCccc---------------C-------
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEAC---------------L------- 174 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~---------------~------- 174 (252)
|+.|.+-..+. ..|..+.+++...--......|+|+.|...+|..+|.|++.-.-+ +
T Consensus 14 G~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 14 GEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred CceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 89999998876 788898888854311111157999999999999999999873321 1
Q ss_pred ---ChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 175 ---DEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 175 ---~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
...++.+|+.+|.+| +.+.|.+.|-+.++....
T Consensus 93 lk~d~~tLfdli~AAnyL--di~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 93 LKVDQGTLFDLILAANYL--DIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HhcCHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHHc
Confidence 226889999999999 999999999998886653
No 26
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.01 E-value=0.024 Score=41.35 Aligned_cols=40 Identities=35% Similarity=0.501 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 181 DLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 181 ~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
.++.+|+.| ++..|.+.|.+||..||..+.++++|..|+.
T Consensus 3 ~i~~~a~~~--~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~ 42 (101)
T smart00875 3 GIRRFAELY--GLEELLEKALRFILKNFLEVAQSEEFLELSL 42 (101)
T ss_pred hHHHHHHHh--ChHHHHHHHHHHHHHHHHHHhcCcHHhcCCH
Confidence 467788888 9999999999999999999999999999875
No 27
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.52 E-value=0.16 Score=47.30 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=65.5
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhcc--HHHHHhhcCccccCCcce-EEecCCCHHHHHHHHHHHhcCcccCChHHH
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRS--PVFKAMLDNEMEESRSGT-IKISDVSYDALRAFVNYLYTAEACLDEQLA 179 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS--~~F~~mf~~~~~e~~~~~-I~l~dvs~~~f~~lL~ylYtg~~~~~~~~~ 179 (252)
|.|-|| |+.|.-.+.-|+... .+|-+++.+.|....... ..+-|=+|+.|..+|.|+-||++++.....
T Consensus 13 V~lNVG--------GriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~ 84 (465)
T KOG2714|consen 13 VKLNVG--------GRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFP 84 (465)
T ss_pred EEEecC--------ceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCch
Confidence 578898 999998888886554 699999987765433322 233367999999999999999999966555
Q ss_pred HHHHH-HHHHhhhchHHHHH
Q 025481 180 CDLLE-LAEKYQHNAKQLLE 198 (252)
Q Consensus 180 ~~ll~-~A~~y~~~~~~L~~ 198 (252)
..++. =|.+| ++..|..
T Consensus 85 ~~llhdEA~fY--Gl~~llr 102 (465)
T KOG2714|consen 85 ERLLHDEAMFY--GLTPLLR 102 (465)
T ss_pred hhhhhhhhhhc--CcHHHHH
Confidence 55555 78899 8877766
No 28
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.73 Score=36.17 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=71.5
Q ss_pred ccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccC------
Q 025481 101 TDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL------ 174 (252)
Q Consensus 101 sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~------ 174 (252)
+-|.|+.++ |..|.+.+.+ |.||-..+.|+... .+. .-.|.++.|...+|..+++|+-...-..
T Consensus 2 s~i~l~s~d-------ge~F~vd~~i-AerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d 71 (158)
T COG5201 2 SMIELESID-------GEIFRVDENI-AERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDEND 71 (158)
T ss_pred CceEEEecC-------CcEEEehHHH-HHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccCh
Confidence 345666654 8888888765 68999999998652 111 2346778999999999999996533221
Q ss_pred -------------------ChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 175 -------------------DEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 175 -------------------~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
+.+++.++..+|.++ +.+.|.+.|-+.++.-+.
T Consensus 72 ~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL--~ikpLLd~gCKivaemir 123 (158)
T COG5201 72 LEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYL--EIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred HhhhccCCccHHHHHHHHhhHHHHHHHHHhhccc--cchHHHHHHHHHHHHHHc
Confidence 126778888899999 999999999998886654
No 29
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=90.24 E-value=1 Score=38.79 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=64.7
Q ss_pred ccEEEEeccCCCCCCCCceEehhHHHHhhcc--HHHHHhhcCcc---ccCCcceEEecCCCHHHHHHHHHHHhcCcccC-
Q 025481 101 TDVVLVAASESGPAGPAVPVPAHKAVLVSRS--PVFKAMLDNEM---EESRSGTIKISDVSYDALRAFVNYLYTAEACL- 174 (252)
Q Consensus 101 sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS--~~F~~mf~~~~---~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~- 174 (252)
+=|.+-++ |+.|.-...-|..|- ..+.+||.+.- ++.+.+-+- -|-+|..|+.+|.|+-.|.++.
T Consensus 9 ~~vrlnig--------Gk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~l-IDRsp~yFepIlNyLr~Gq~~~~ 79 (302)
T KOG1665|consen 9 SMVRLNIG--------GKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVL-IDRSPKYFEPILNYLRDGQIPSL 79 (302)
T ss_pred hhheeecC--------CeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEE-EccCchhhHHHHHHHhcCceeec
Confidence 34667777 788877777776664 36788997642 233334444 4679999999999999999876
Q ss_pred ChHHHHHHHHHHHHhhhchHHHHHHH
Q 025481 175 DEQLACDLLELAEKYQHNAKQLLEAA 200 (252)
Q Consensus 175 ~~~~~~~ll~~A~~y~~~~~~L~~~c 200 (252)
+.-++..|+..|++| +.-.|++..
T Consensus 80 s~i~~lgvLeeArff--~i~sL~~hl 103 (302)
T KOG1665|consen 80 SDIDCLGVLEEARFF--QILSLKDHL 103 (302)
T ss_pred CCccHHHHHHHhhHH--hhHhHHhHH
Confidence 567889999999999 665555443
No 30
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.91 E-value=1.7 Score=35.72 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=74.1
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHH-HHhhcCccc---cCCcceEEecCCCHHHHHHHHHHHhcCcccCChHH
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVF-KAMLDNEME---ESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQL 178 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F-~~mf~~~~~---e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~~ 178 (252)
|.|-|| |..|.--|.-|.--+.-| ..+...... .....--.+-|=+|..|..+|.|+-.|++.+..-.
T Consensus 23 VRlNVG--------Gt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ 94 (210)
T KOG2715|consen 23 VRLNVG--------GTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLS 94 (210)
T ss_pred EEEecC--------CEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhh
Confidence 677788 899999999998777444 444443311 11122244557789999999999999999887633
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchh
Q 025481 179 ACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEE 216 (252)
Q Consensus 179 ~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~ 216 (252)
-..+|.-|+.| +...|.....+.|...-..+.+...
T Consensus 95 eeGvL~EAefy--n~~~li~likd~i~dRd~~~tq~~~ 130 (210)
T KOG2715|consen 95 EEGVLEEAEFY--NDPSLIQLIKDRIQDRDAMVTQEAD 130 (210)
T ss_pred hhccchhhhcc--CChHHHHHHHHHHHHHhhhccccch
Confidence 45577888999 9998888888888876655554443
No 31
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=84.93 E-value=0.93 Score=41.14 Aligned_cols=103 Identities=29% Similarity=0.316 Sum_probs=72.1
Q ss_pred CceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCCh--------------------
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDE-------------------- 176 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~-------------------- 176 (252)
...+++|+.+|+..|+.|..+....-..+....+.+-.++..++..+..++|.. +..-+
T Consensus 35 ~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~ 113 (319)
T KOG1778|consen 35 KDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQP 113 (319)
T ss_pred hhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCc
Confidence 678999999999999999988766522233345666677778888888888875 21111
Q ss_pred ---------------HHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 177 ---------------QLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 177 ---------------~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
.++..++..+..| ....|..++...|...+...+.++.+..+..
T Consensus 114 ~~d~~~~~~~~~~~~r~~flvl~~~~~~--~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c 172 (319)
T KOG1778|consen 114 KADCDPILECGLFDKRNVFLVLQLAEHC--DFSDLRRAKHSSIMLLFDLHLQTEKWFAYTC 172 (319)
T ss_pred cccCCccccchhhhhHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHhcccCceeeec
Confidence 3445555555555 7788888888888888887777666655443
No 32
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=74.90 E-value=6.5 Score=35.49 Aligned_cols=79 Identities=13% Similarity=0.240 Sum_probs=54.7
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhcc-HHHHHhhcCccc---cCCcceEEec-CCCHHHHHHHHHHHhcCcccCC-h
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRS-PVFKAMLDNEME---ESRSGTIKIS-DVSYDALRAFVNYLYTAEACLD-E 176 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS-~~F~~mf~~~~~---e~~~~~I~l~-dvs~~~f~~lL~ylYtg~~~~~-~ 176 (252)
+++.+. +..|-+-+.+|.+.- ...-.||.+++. .+..++..+. +|+..+|+++|+|--+|.+.-+ .
T Consensus 98 ~t~lvd--------~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~ 169 (438)
T KOG3840|consen 98 VCLLVD--------QTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSS 169 (438)
T ss_pred eEEEee--------eEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCC
Confidence 456666 778888888886553 234566665432 2223455554 6999999999999999988653 4
Q ss_pred HHHHHHHHHHHHh
Q 025481 177 QLACDLLELAEKY 189 (252)
Q Consensus 177 ~~~~~ll~~A~~y 189 (252)
-.+.+|-.+++++
T Consensus 170 vSvpELrEACDYL 182 (438)
T KOG3840|consen 170 VSVSELREACDYL 182 (438)
T ss_pred CchHHHHhhcceE
Confidence 5677788888887
No 33
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=70.18 E-value=13 Score=26.21 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 174 LDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 174 ~~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
+....+.+|+.+|.++ +...|.+.|-++|+..+.
T Consensus 11 ~~~~~L~~l~~AA~yL--~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYL--DIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHH--cchHHHHHHHHHHHHHhc
Confidence 4677899999999999 999999999999997765
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=59.55 E-value=3.8 Score=28.23 Aligned_cols=39 Identities=21% Similarity=0.476 Sum_probs=20.2
Q ss_pred cchhhhhhhhhhhcCCCCCCchHHhhhhhchHHHHHHHHHHH
Q 025481 29 SETMRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDL 70 (252)
Q Consensus 29 ~~~~~c~~c~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~ 70 (252)
=+|.||.+|-.++.- .-|.-|+..+-..|-...++++++
T Consensus 26 CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 26 CEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp SS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHH
T ss_pred CccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhcc
Confidence 368999999988663 338888888888887888887764
No 35
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=57.49 E-value=5.1 Score=22.20 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=16.2
Q ss_pred hhhhhhhhhhhcCCCCCCchHHh
Q 025481 31 TMRCISCREEYGTRDAGTCKECY 53 (252)
Q Consensus 31 ~~~c~~c~~~~~~~~~~~c~~c~ 53 (252)
.+.|.+|+. ....++.+|..|=
T Consensus 2 ~~~Cp~Cg~-~~~~~~~fC~~CG 23 (26)
T PF13248_consen 2 EMFCPNCGA-EIDPDAKFCPNCG 23 (26)
T ss_pred cCCCcccCC-cCCcccccChhhC
Confidence 367888888 4567788888773
No 36
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=56.81 E-value=42 Score=25.11 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=41.4
Q ss_pred cEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccc---cCCcceEEecCCCHHHHHHHHHHH
Q 025481 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME---ESRSGTIKISDVSYDALRAFVNYL 167 (252)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~---e~~~~~I~l~dvs~~~f~~lL~yl 167 (252)
-+.+.||++ .++|-++...| ..|.|+.++...-. -...+.|.|+ .+...|+.+|..|
T Consensus 40 ~~~VyVG~~------~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEE------RRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCcc------ceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 467777743 68899988888 46899999965322 2235678887 7888999998765
No 37
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=42.46 E-value=69 Score=27.61 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=49.5
Q ss_pred CceEehhHH-HHhhccHHHHHhhcCccc--cCCcceEEecCCCHHHHHHHHHHHhcCcccCCh--HHHHHHHHHHHHhhh
Q 025481 117 AVPVPAHKA-VLVSRSPVFKAMLDNEME--ESRSGTIKISDVSYDALRAFVNYLYTAEACLDE--QLACDLLELAEKYQH 191 (252)
Q Consensus 117 ~~~f~aHk~-ILaarS~~F~~mf~~~~~--e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~--~~~~~ll~~A~~y~~ 191 (252)
|..|..-.. ++.-.-....+||.+... ........| |=+...|+.+|.|+-|-.+.++. .++..|+.-|++|
T Consensus 17 G~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~-- 93 (221)
T KOG2723|consen 17 GAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFF-- 93 (221)
T ss_pred CeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHH--
Confidence 544443222 333444566777775221 111233444 44668999999999996666655 6788899999999
Q ss_pred chHHHHHH
Q 025481 192 NAKQLLEA 199 (252)
Q Consensus 192 ~~~~L~~~ 199 (252)
+...+...
T Consensus 94 ~l~~~~~~ 101 (221)
T KOG2723|consen 94 QLEAPVTY 101 (221)
T ss_pred ccccHHHH
Confidence 66554443
No 38
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.42 E-value=56 Score=33.08 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCcccCChHHHHHHHHHHHHh
Q 025481 158 DALRAFVNYLYTAEACLDEQLACDLLELAEKY 189 (252)
Q Consensus 158 ~~f~~lL~ylYtg~~~~~~~~~~~ll~~A~~y 189 (252)
.++..+|+|+-|.+..+-++.+..+..+|++|
T Consensus 404 ~IV~elLqYL~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 404 QIVAELLQYLETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999
No 39
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=42.21 E-value=8.8 Score=27.63 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=10.9
Q ss_pred CCCchHHhhhhhchH
Q 025481 46 AGTCKECYEEASETE 60 (252)
Q Consensus 46 ~~~c~~c~~~~~~~~ 60 (252)
..||.+||+...=+.
T Consensus 26 ~~YC~yCy~~G~Ft~ 40 (81)
T PF12674_consen 26 EDYCSYCYQNGEFTQ 40 (81)
T ss_pred hhHHHHHhcCCceee
Confidence 448999999866443
No 40
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=38.96 E-value=27 Score=31.99 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=27.2
Q ss_pred hhhhhhhhhhcCCCCCCchHHhhhhhc--------hHHHHHHHH
Q 025481 32 MRCISCREEYGTRDAGTCKECYEEASE--------TEEELKREI 67 (252)
Q Consensus 32 ~~c~~c~~~~~~~~~~~c~~c~~~~~~--------~~~~~~~~~ 67 (252)
..|..|+...+.+-+|.|.+|+..-.+ +.|+|+.++
T Consensus 39 ~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ee~kmel 82 (480)
T COG5175 39 QICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSPEELKMEL 82 (480)
T ss_pred HHHHHHHHHHHhhccCCChHhhhhccccceeEEecCHHHHHHHH
Confidence 568999999999999999999865222 456665544
No 41
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.48 E-value=15 Score=19.84 Aligned_cols=19 Identities=37% Similarity=0.831 Sum_probs=10.1
Q ss_pred hhhhhhhhhcCCCCCCchHH
Q 025481 33 RCISCREEYGTRDAGTCKEC 52 (252)
Q Consensus 33 ~c~~c~~~~~~~~~~~c~~c 52 (252)
+|..|+.... .++..|..|
T Consensus 1 ~Cp~CG~~~~-~~~~fC~~C 19 (23)
T PF13240_consen 1 YCPNCGAEIE-DDAKFCPNC 19 (23)
T ss_pred CCcccCCCCC-CcCcchhhh
Confidence 3555665554 445555554
No 42
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=35.87 E-value=9.1 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=16.1
Q ss_pred cchhhhhhhhhhhcCCCCCCchHH
Q 025481 29 SETMRCISCREEYGTRDAGTCKEC 52 (252)
Q Consensus 29 ~~~~~c~~c~~~~~~~~~~~c~~c 52 (252)
=+|.||.+|...|... ...|-.|
T Consensus 17 CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 17 CGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp TSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCchhHHHHHHHHHC-cCCCcCC
Confidence 3678999999998866 4555433
No 43
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=35.42 E-value=1.4e+02 Score=28.85 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhh
Q 025481 176 EQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELV 221 (252)
Q Consensus 176 ~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~ 221 (252)
......|...|.++ +-++|...|.+.|..++...+..++|.+..
T Consensus 220 ~naf~~L~q~A~lf--~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 220 DNAFLELFQRAKLF--DEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred hHHHHHHHHHHHhh--cCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 34455555668888 999999999999999999999999888765
No 44
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=29.36 E-value=1.6e+02 Score=25.28 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 175 DEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 175 ~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
..++.+.++..|+.+ +..+|...|-..|+.++.++ ....|.+++.
T Consensus 167 ~V~NCIk~Ye~AEe~--n~~qL~n~~~eiIA~~W~dL-~~a~FaqMs~ 211 (280)
T KOG4591|consen 167 HVDNCIKFYEFAEEL--NARQLMNVAAEIIAGAWDDL-GKADFAQMSA 211 (280)
T ss_pred hHhhHHHHHHHHHHh--hHHHHHHHHHHHHHhhcccc-ChHHHHhccH
Confidence 458889999999999 99999999999999999875 5778888874
No 45
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=26.87 E-value=34 Score=27.29 Aligned_cols=30 Identities=43% Similarity=0.494 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCcccccchhhhhhhhhhhc
Q 025481 13 DMSGSGSGSGLESEAESETMRCISCREEYG 42 (252)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~ 42 (252)
+-||||++++++++++++.-+=..-..+|-
T Consensus 90 d~SGSGsgSgsGsgsgsGSg~l~e~e~eyq 119 (150)
T PF04360_consen 90 DYSGSGSGSGSGSGSGSGSGFLTEMEQEYQ 119 (150)
T ss_pred cccCcccccccccCCcCCCCccccceeecc
Confidence 446666666666655555544333334443
No 46
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=24.29 E-value=85 Score=26.71 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=17.5
Q ss_pred cccEEEEeccCCCCCCCCceEehhHHHHh
Q 025481 100 YTDVVLVAASESGPAGPAVPVPAHKAVLV 128 (252)
Q Consensus 100 ~sDv~l~v~~~~~~~~~~~~f~aHk~ILa 128 (252)
-+|+.|++|.+ ....+|...+-.
T Consensus 171 ~~Dl~lvvGTS------l~V~p~~~l~~~ 193 (222)
T cd01413 171 EADLFIVLGSS------LVVYPANLLPLI 193 (222)
T ss_pred cCCEEEEEccC------CEeccHhHHHHH
Confidence 37999999976 677888766543
No 47
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=24.19 E-value=31 Score=19.22 Aligned_cols=22 Identities=23% Similarity=0.708 Sum_probs=17.2
Q ss_pred hhh--hhhhhhcCCCCCCchHHhh
Q 025481 33 RCI--SCREEYGTRDAGTCKECYE 54 (252)
Q Consensus 33 ~c~--~c~~~~~~~~~~~c~~c~~ 54 (252)
.|. .|+.-=.+.+.++|.+||.
T Consensus 3 ~C~~~~CgF~G~~~t~~~CskCy~ 26 (26)
T smart00259 3 KCRRPGCGFFGNPATEGLCSKCFK 26 (26)
T ss_pred ccccCCCCCcCChhhcccCHhhcC
Confidence 355 7777778888999999984
No 48
>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta
Probab=24.11 E-value=89 Score=21.40 Aligned_cols=40 Identities=18% Similarity=0.522 Sum_probs=26.8
Q ss_pred hhhhhhhhcCCCCCCchHHhhhhhchHHHHHHHHHHHhhh
Q 025481 34 CISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAK 73 (252)
Q Consensus 34 c~~c~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 73 (252)
|..|+..-...+...|..|......+--.+..++.....+
T Consensus 1 C~~C~~~~~~~~~~lC~~C~~~~~~~~~~l~~~~~~~E~~ 40 (73)
T PF14260_consen 1 CLVCGAKTQEGESPLCSNCRSDPQQTIYNLLSRLRELERR 40 (73)
T ss_pred CCCCCCcCCCCCCCcCcccCcChHHHHHHHHHHHHHHHHH
Confidence 6778888776667999999975554444555555554444
No 49
>PLN03090 auxin-responsive family protein; Provisional
Probab=24.05 E-value=2e+02 Score=21.77 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=38.5
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCc---cccCCcceEEecCCCHHHHHHHHHHH
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE---MEESRSGTIKISDVSYDALRAFVNYL 167 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~---~~e~~~~~I~l~dvs~~~f~~lL~yl 167 (252)
+.+.|+++ .++|-++-..| ..|.|+.++... +.-.....|.|+ .+...|+.++..|
T Consensus 45 ~aVyVG~~------~~RfvVp~~~L--~hP~F~~LL~~aeeEfGf~~~G~L~IP-C~~~~Fe~ll~~i 103 (104)
T PLN03090 45 FPVYVGEN------RSRYIVPISFL--THPEFQSLLQQAEEEFGFDHDMGLTIP-CEEVVFRSLTSMI 103 (104)
T ss_pred EEEEECCC------CEEEEEEHHHc--CCHHHHHHHHHHHHHhCCCCCCcEEEe-CCHHHHHHHHHHh
Confidence 45567743 57888887777 458999999543 211233568886 5888999888755
No 50
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=22.75 E-value=69 Score=26.31 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=19.8
Q ss_pred hhhhhhhhhhhcCCCCCCchHHhhhhh
Q 025481 31 TMRCISCREEYGTRDAGTCKECYEEAS 57 (252)
Q Consensus 31 ~~~c~~c~~~~~~~~~~~c~~c~~~~~ 57 (252)
-..|.+|+..-. ....|.+||+--.
T Consensus 93 l~~CP~CGh~k~--a~~LC~~Cy~kV~ 117 (176)
T KOG4080|consen 93 LNTCPACGHIKP--AHTLCDYCYAKVH 117 (176)
T ss_pred cccCcccCcccc--ccccHHHHHHHHH
Confidence 367999997665 6789999998754
No 51
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=30 Score=32.07 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=23.0
Q ss_pred hhhhhhhhhhcCCCCCCchHHhhhhhc
Q 025481 32 MRCISCREEYGTRDAGTCKECYEEASE 58 (252)
Q Consensus 32 ~~c~~c~~~~~~~~~~~c~~c~~~~~~ 58 (252)
-||-+|...+-.+++|||..|...-+|
T Consensus 98 afcgncasgfyrndngyctkcetscse 124 (747)
T KOG4611|consen 98 AFCGNCASGFYRNDNGYCTKCETSCSE 124 (747)
T ss_pred cccccccccceECCCcccccccccHhh
Confidence 699999988888999999999876443
No 52
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=21.60 E-value=25 Score=29.64 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCCCCCcccccch-hhhhhhh
Q 025481 7 HSTRHPDMSGSGSGSGLESEAESET-MRCISCR 38 (252)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~c~~c~ 38 (252)
..++.|+||||++++=+++-.-+.. |-|+-.+
T Consensus 15 las~~PtPGGGsasAl~ga~g~~L~~MV~~lt~ 47 (208)
T COG3404 15 LASEKPTPGGGSASALVGAMGCALASMVANLTR 47 (208)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999998886665555544 5555544
No 53
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.58 E-value=53 Score=34.47 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCCCCCCCCC--------CCCcccccchhhhhhhhhh---hcCCCCCC
Q 025481 12 PDMSGSGSGS--------GLESEAESETMRCISCREE---YGTRDAGT 48 (252)
Q Consensus 12 ~~~~~~~~~~--------~~~~~~~~~~~~c~~c~~~---~~~~~~~~ 48 (252)
|....||+.+ .-...-+.+..+|.+|+.. .+|+.||.
T Consensus 599 PiG~~GG~~R~i~~A~~~~g~~eVEVg~RfCpsCG~~t~~frCP~CG~ 646 (1121)
T PRK04023 599 PIGNAGGSTRDINKAAKYKGTIEVEIGRRKCPSCGKETFYRRCPFCGT 646 (1121)
T ss_pred cccccCcccccHHHHHhcCCceeecccCccCCCCCCcCCcccCCCCCC
Confidence 3445556555 1233445556899999954 56666663
No 54
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=20.35 E-value=37 Score=22.20 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=5.0
Q ss_pred hhhhhhh
Q 025481 32 MRCISCR 38 (252)
Q Consensus 32 ~~c~~c~ 38 (252)
--|++||
T Consensus 31 WaC~sCW 37 (57)
T PF14445_consen 31 WACNSCW 37 (57)
T ss_pred hhhhhhh
Confidence 3478888
No 55
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=20.10 E-value=1.4e+02 Score=25.69 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.3
Q ss_pred cccEEEEeccCCCCCCCCceEehhHHH
Q 025481 100 YTDVVLVAASESGPAGPAVPVPAHKAV 126 (252)
Q Consensus 100 ~sDv~l~v~~~~~~~~~~~~f~aHk~I 126 (252)
-+|+.|++|.+ ...++|...+
T Consensus 175 ~aDlllvvGTS------l~V~pa~~l~ 195 (235)
T cd01408 175 EADLLIVIGTS------LKVAPFASLP 195 (235)
T ss_pred cCCEEEEECCC------CeeccHHHHH
Confidence 38999999975 6778877655
No 56
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=20.10 E-value=1e+02 Score=24.41 Aligned_cols=28 Identities=25% Similarity=0.668 Sum_probs=23.1
Q ss_pred hhhhhhhhhhcCCCCCCchHHhhhhhch
Q 025481 32 MRCISCREEYGTRDAGTCKECYEEASET 59 (252)
Q Consensus 32 ~~c~~c~~~~~~~~~~~c~~c~~~~~~~ 59 (252)
..|..|+.-|.......|..|+++..+.
T Consensus 4 ~nC~~CgklF~~~~~~iCp~C~~~~e~~ 31 (137)
T TIGR03826 4 ANCPKCGRLFVKTGRDVCPSCYEEEERE 31 (137)
T ss_pred ccccccchhhhhcCCccCHHHhHHHHHH
Confidence 4699999988877788999999876653
Done!