Query 025481
Match_columns 252
No_of_seqs 284 out of 1631
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 99.9 3.8E-24 1.3E-28 162.0 11.1 103 98-207 6-108 (109)
2 3hve_A Gigaxonin; ubiquitin, c 99.9 1.3E-23 4.4E-28 182.2 13.4 117 98-222 29-177 (256)
3 2if5_A Zinc finger and BTB dom 99.9 2.2E-23 7.5E-28 160.7 12.9 97 98-204 23-119 (120)
4 3htm_A Speckle-type POZ protei 99.9 1.9E-23 6.6E-28 170.1 12.3 101 98-208 32-132 (172)
5 1r29_A B-cell lymphoma 6 prote 99.9 3.2E-23 1.1E-27 161.4 12.6 99 98-207 27-126 (127)
6 3i3n_A Kelch-like protein 11; 99.9 3.1E-23 1.1E-27 182.0 11.6 120 98-222 30-185 (279)
7 3b84_A Zinc finger and BTB dom 99.9 6.6E-23 2.2E-27 158.2 10.8 96 98-207 22-117 (119)
8 2yy9_A Zinc finger and BTB dom 99.9 6.4E-23 2.2E-27 161.8 9.6 100 98-211 23-122 (135)
9 2ppi_A Gigaxonin; BTB domain, 99.9 8E-23 2.7E-27 163.1 9.4 97 98-204 45-143 (144)
10 1buo_A POZ domain, protein (pr 99.9 5.2E-22 1.8E-26 153.5 13.5 95 98-207 26-120 (121)
11 2vpk_A Myoneurin; transcriptio 99.9 3.5E-22 1.2E-26 153.1 12.1 94 98-205 20-115 (116)
12 2z8h_A Transcription regulator 99.9 2.1E-22 7.2E-27 159.2 9.5 99 98-208 34-133 (138)
13 3hqi_A Speckle-type POZ protei 99.9 6.2E-22 2.1E-26 176.1 12.4 101 98-208 172-272 (312)
14 4eoz_A Speckle-type POZ protei 99.9 3.7E-22 1.3E-26 158.1 9.2 102 98-209 23-124 (145)
15 2q81_A MIZ-1 protein; BTB/POZ 99.9 8.9E-22 3E-26 151.8 9.9 93 98-205 25-117 (119)
16 3ohu_A Transcription regulator 99.9 1.4E-22 4.8E-27 157.4 5.0 94 98-203 30-124 (125)
17 2ihc_A Transcription regulator 99.9 2.8E-22 9.6E-27 155.7 5.3 96 98-205 27-123 (124)
18 3ga1_A Nucleus accumbens-assoc 99.8 7.7E-22 2.6E-26 154.2 6.9 96 98-207 31-127 (129)
19 3fkc_A Transcriptional regulat 99.8 5.8E-20 2E-24 141.1 12.6 86 98-198 29-115 (116)
20 3m5b_A Zinc finger and BTB dom 99.8 1E-20 3.6E-25 146.2 6.6 90 98-206 28-117 (119)
21 2ast_A S-phase kinase-associat 99.5 1.7E-13 5.9E-18 110.8 11.6 97 103-209 3-127 (159)
22 4ajy_C Transcription elongatio 99.4 1.1E-12 3.7E-17 97.4 9.4 79 103-189 4-95 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 1.7E-10 5.9E-15 91.3 8.9 93 103-209 4-122 (141)
24 2p1m_A SKP1-like protein 1A; F 98.9 1.9E-10 6.6E-15 92.9 1.5 87 117-209 13-126 (160)
25 1hv2_A Elongin C, ELC1; protei 98.7 6.3E-08 2.2E-12 71.8 8.8 78 103-189 6-97 (99)
26 2fnj_C Transcription elongatio 98.6 6.5E-08 2.2E-12 71.4 7.3 79 103-189 3-94 (96)
27 3v7d_A Suppressor of kinetocho 98.6 4.7E-07 1.6E-11 73.5 11.3 98 102-209 8-134 (169)
28 1vcb_B Protein (elongin C); tu 98.3 2.4E-06 8.4E-11 64.6 8.1 79 103-189 19-110 (112)
29 3drz_A BTB/POZ domain-containi 98.1 1.7E-05 5.6E-10 59.4 9.7 94 102-206 7-106 (107)
30 2eqx_A Kelch repeat and BTB do 97.6 0.0001 3.5E-09 54.7 6.4 50 171-222 5-54 (105)
31 3drx_A BTB/POZ domain-containi 96.7 0.0027 9.3E-08 52.5 6.1 100 103-213 14-119 (202)
32 3kvt_A Potassium channel prote 93.7 0.048 1.6E-06 40.9 3.4 78 103-189 7-87 (115)
33 1s1g_A Potassium voltage-gated 92.8 0.19 6.5E-06 38.1 5.5 93 102-208 14-113 (124)
34 1nn7_A Potassium channel KV4.2 91.1 0.16 5.3E-06 37.4 3.3 89 103-205 2-97 (105)
35 1t1d_A Protein (potassium chan 89.6 0.2 6.8E-06 36.6 2.7 82 103-195 3-88 (100)
36 2nz0_B Potassium voltage-gated 89.3 0.56 1.9E-05 36.3 5.2 81 102-196 36-121 (140)
37 2cr8_A MDM4 protein; ZF-ranbp 50.5 4.3 0.00015 25.6 0.5 26 31-57 11-36 (53)
38 2r9r_B Paddle chimera voltage 39.1 25 0.00084 32.7 4.0 79 103-195 54-139 (514)
39 3kl4_B DPAP B, YSCV, signal pe 37.5 12 0.0004 21.7 1.0 8 15-22 3-10 (42)
40 1e4u_A Transcriptional repress 32.5 11 0.00038 25.6 0.4 29 29-57 33-61 (78)
41 2eqf_A Tumor necrosis factor, 31.2 17 0.00059 21.8 1.0 13 44-56 24-36 (46)
42 2csy_A Zinc finger protein 183 29.6 11 0.00039 25.2 -0.0 22 24-45 8-29 (81)
43 1wee_A PHD finger family prote 28.4 19 0.00063 24.0 1.0 25 17-42 2-26 (72)
44 1twf_L ABC10-alpha, DNA-direct 24.1 12 0.00042 25.2 -0.6 25 29-53 26-52 (70)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=162.05 Aligned_cols=103 Identities=31% Similarity=0.451 Sum_probs=90.0
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+++++ ++++.|+|||.||+++|+||++||.++|.|+. ..|.|+++++++|+.+|+|+|||.+.++.+
T Consensus 6 ~~~~Dv~l~v~~~----~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 6 ELMADVHFVVGPP----GATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCEEEEESST----TSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred CCcccEEEEECCC----CCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5689999999831 11289999999999999999999999999988 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
++.+++.+|++| +++.|++.|.+||.++
T Consensus 81 ~~~~ll~~A~~~--~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 81 TVLATLYAAKKY--IVPALAKACVNFLETS 108 (109)
T ss_dssp THHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcHHHHHHHHHHHHhh
Confidence 999999999999 9999999999999876
No 2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.90 E-value=1.3e-23 Score=182.20 Aligned_cols=117 Identities=19% Similarity=0.353 Sum_probs=102.4
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccc--cCCcceEEecCCCHHHHHHHHHHHhcCcccCC
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME--ESRSGTIKISDVSYDALRAFVNYLYTAEACLD 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~--e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~ 175 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++. ++....|.++++++++|+.+|+|+|||.+.++
T Consensus 29 ~~~~Dv~l~v~--------~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~ 100 (256)
T 3hve_A 29 SRFCDAHLVLD--------GEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN 100 (256)
T ss_dssp -CCCCEEEEET--------TEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC
T ss_pred CCCcceEEEEC--------CEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCccc
Confidence 56899999999 899999999999999999999999876 66778999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 176 EQLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 176 ~~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
.+++.+++.+|++| .|++..|.+.|.+||.+||..+..+++|.+|+.
T Consensus 101 ~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~ 177 (256)
T 3hve_A 101 EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSP 177 (256)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCH
T ss_pred HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCH
Confidence 99999999999999 789999999999999999999999999999875
No 3
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.90 E-value=2.2e-23 Score=160.72 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=89.3
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|||.+.++.+
T Consensus 23 ~~~~Dv~l~v~--------~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~ 94 (120)
T 2if5_A 23 GLLCDVVILVE--------GREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTA 94 (120)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGG
T ss_pred CCCCCeEEEEC--------CEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHH
Confidence 56899999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLI 204 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i 204 (252)
++.+++.+|++| +++.|++.|.+|+
T Consensus 95 ~~~~ll~~A~~~--~i~~L~~~C~~~L 119 (120)
T 2if5_A 95 NVGDILSAARLL--EIPAVSHVCADLL 119 (120)
T ss_dssp GHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHh
Confidence 999999999999 9999999999987
No 4
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=170.10 Aligned_cols=101 Identities=36% Similarity=0.568 Sum_probs=95.9
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++.++....|.|+++++++|+.+|+|+|||.+.++.+
T Consensus 32 ~~~~Dv~l~v~--------~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~ 103 (172)
T 3htm_A 32 SRFTDCCLCVA--------GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 103 (172)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGG
T ss_pred CCCcceEEEEC--------CEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHH
Confidence 56899999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDNM 208 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~ 208 (252)
++.+|+.+|++| +++.|++.|.++|.+++
T Consensus 104 ~~~~ll~~A~~~--~~~~l~~~c~~~l~~~l 132 (172)
T 3htm_A 104 MADDLLAAADKY--ALERLKVMCEDALCSNL 132 (172)
T ss_dssp THHHHHHHHHHT--TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh--CcHHHHHHHHHHHHHhC
Confidence 999999999999 99999999999988654
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.90 E-value=3.2e-23 Score=161.43 Aligned_cols=99 Identities=19% Similarity=0.379 Sum_probs=94.4
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEe-cCCCHHHHHHHHHHHhcCcccCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKI-SDVSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l-~dvs~~~f~~lL~ylYtg~~~~~~ 176 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.+++.| ....|.| +++++++|+.+|+|||||.+.++.
T Consensus 27 ~~~~Dv~l~v~--------~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~ 97 (127)
T 1r29_A 27 DILTDVVIVVS--------REQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLRE 97 (127)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT
T ss_pred CCCCCEEEEEC--------CEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCH
Confidence 56999999999 8999999999999999999999999988 7789999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 177 QLACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
+++.+|+.+|++| +++.|++.|.+||.++
T Consensus 98 ~~~~~ll~~A~~~--~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 98 GNIMAVMATAMYL--QMEHVVDTCRKFIKAS 126 (127)
T ss_dssp TTHHHHHHHHHHT--TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999998753
No 6
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.89 E-value=3.1e-23 Score=182.01 Aligned_cols=120 Identities=26% Similarity=0.420 Sum_probs=103.4
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEec------CCCHHHHHHHHHHHhcCc
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKIS------DVSYDALRAFVNYLYTAE 171 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~------dvs~~~f~~lL~ylYtg~ 171 (252)
..+|||+|+|++. +|+.|+|||.||+++|+||++||.++|.|+....|.|+ ++++++|+.+|+|+|||.
T Consensus 30 ~~~~Dv~l~v~~~-----~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~ 104 (279)
T 3i3n_A 30 GLFCDITLCFGGA-----GGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR 104 (279)
T ss_dssp TTTCCEEEECC---------CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSE
T ss_pred CCCCCeEEEEcCC-----CCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCC
Confidence 6799999999721 17899999999999999999999999999999999998 899999999999999999
Q ss_pred ccCChHHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhh
Q 025481 172 ACLDEQLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELV 221 (252)
Q Consensus 172 ~~~~~~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~ 221 (252)
+.++.+++.+++.+|++| .|++..|.+.|.+||..||..+..+++|.+|+
T Consensus 105 ~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~ 184 (279)
T 3i3n_A 105 IRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLP 184 (279)
T ss_dssp EEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSC
T ss_pred cccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCC
Confidence 999999999999999998 78999999999999999999999999999987
Q ss_pred h
Q 025481 222 E 222 (252)
Q Consensus 222 ~ 222 (252)
.
T Consensus 185 ~ 185 (279)
T 3i3n_A 185 F 185 (279)
T ss_dssp H
T ss_pred H
Confidence 5
No 7
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=158.19 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=88.9
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.+++ ...|.|+++++++|+.+|+|+|||.+.++.+
T Consensus 22 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~ 89 (119)
T 3b84_A 22 GQYCDATLDVG--------GLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSG 89 (119)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCcceEEEEC--------CEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHH
Confidence 56999999999 89999999999999999999999865 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
++.+|+.+|++| +++.|++.|.+|+.++
T Consensus 90 ~v~~ll~~A~~~--~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 90 NRDQVLLAAREL--RVPEAVELCQSFKPKT 117 (119)
T ss_dssp THHHHHHHHHHT--TCHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHh--CcHHHHHHHHHHHHHc
Confidence 999999999999 9999999999998765
No 8
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.88 E-value=6.4e-23 Score=161.81 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=87.4
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++ ...|.|+++++++|+.+|+|||||++.++.+
T Consensus 23 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~ 90 (135)
T 2yy9_A 23 GQYCDATLDVG--------GLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSG 90 (135)
T ss_dssp TTTCCEEEEET--------TEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCcceEEEEC--------CEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence 56999999999 89999999999999999999999876 5679999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDNMDKL 211 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v 211 (252)
++.+|+.+|++| ++..|++.|.+||.+++...
T Consensus 91 ~v~~ll~~A~~l--~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 91 NRDQVLLAAKEL--RVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp THHHHHHHHHHT--TCHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHh--CcHHHHHHHHHHHHHhccCC
Confidence 999999999999 99999999999999887643
No 9
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.88 E-value=8e-23 Score=163.07 Aligned_cols=97 Identities=19% Similarity=0.357 Sum_probs=89.3
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCcccc--CCcceEEecCCCHHHHHHHHHHHhcCcccCC
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEE--SRSGTIKISDVSYDALRAFVNYLYTAEACLD 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e--~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~ 175 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++.+ +....|.|+++++++|+.+|+|+|||.+.++
T Consensus 45 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~ 116 (144)
T 2ppi_A 45 SRFCDAHLVLD--------GEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN 116 (144)
T ss_dssp -CCCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCC
T ss_pred CCCcceEEEEC--------CEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCC
Confidence 56999999998 8999999999999999999999988765 5678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 025481 176 EQLACDLLELAEKYQHNAKQLLEAALSLI 204 (252)
Q Consensus 176 ~~~~~~ll~~A~~y~~~~~~L~~~c~~~i 204 (252)
.+++.+|+.+|++| +++.|++.|.+||
T Consensus 117 ~~~v~~ll~~A~~l--~i~~L~~~C~~~L 143 (144)
T 2ppi_A 117 EDTIQDVVQAADLL--LLTDLKTLCCEFL 143 (144)
T ss_dssp TTTHHHHHHHHHHT--TCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh--CcHHHHHHHHHHh
Confidence 99999999999999 9999999999876
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.88 E-value=5.2e-22 Score=153.47 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=89.5
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||.+.++.+
T Consensus 26 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~ 92 (121)
T 1buo_A 26 GTLCDVVIMVD--------SQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAE 92 (121)
T ss_dssp TTTCCEEEEES--------SCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGG
T ss_pred CCCCCEEEEEC--------CEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHH
Confidence 56899999999 8999999999999999999999863 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
++.+++.+|++| +++.|++.|.+|+.+.
T Consensus 93 ~~~~ll~~A~~~--~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 93 DLDDLLYAAEIL--EIEYLEEQCLKMLETI 120 (121)
T ss_dssp GHHHHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999754
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=153.11 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=88.2
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEec--CCCHHHHHHHHHHHhcCcccCC
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKIS--DVSYDALRAFVNYLYTAEACLD 175 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~--dvs~~~f~~lL~ylYtg~~~~~ 175 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.++ ....|.|+ ++++++|+.+|+|+|||.+.++
T Consensus 20 ~~~~Dv~l~v~--------~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~ 87 (116)
T 2vpk_A 20 GFLCDCTIVIG--------EFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLD 87 (116)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCcEEEEEC--------CEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccC
Confidence 56899999999 8999999999999999999999876 35678888 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 025481 176 EQLACDLLELAEKYQHNAKQLLEAALSLIT 205 (252)
Q Consensus 176 ~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~ 205 (252)
.+++.+++.+|++| +++.|++.|.+|+.
T Consensus 88 ~~~v~~ll~~A~~~--~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 88 SWNVKEIHQAADYL--KVEEVVTKCKIKME 115 (116)
T ss_dssp TTTHHHHHHHHHHT--TCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 99999999999999 99999999999985
No 12
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.87 E-value=2.1e-22 Score=159.22 Aligned_cols=99 Identities=16% Similarity=0.307 Sum_probs=92.5
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEec-CCCHHHHHHHHHHHhcCcccCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKIS-DVSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~-dvs~~~f~~lL~ylYtg~~~~~~ 176 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++.+ ...|.++ ++++++|+.+|+|+|||.+.++.
T Consensus 34 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~ 103 (138)
T 2z8h_A 34 DVLCDVTVLVE--------GQRFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVTVKGFEPLIQFAYTAKLILSK 103 (138)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSCHHHHHHHHHHHHHSCCCCCT
T ss_pred CCCcCeEEEEC--------CEEEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCCHHHHHHHHHHhcCCCcccCH
Confidence 56999999999 8999999999999999999999998876 3578995 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHhH
Q 025481 177 QLACDLLELAEKYQHNAKQLLEAALSLITDNM 208 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~ 208 (252)
+++.+|+.+|++| +++.|++.|.+||..++
T Consensus 104 ~~v~~ll~~A~~~--~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 104 DNVDEVCRCVEFL--SVHNIEESCFQFLKFKF 133 (138)
T ss_dssp TTHHHHHHHHHHH--TCGGGHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999998764
No 13
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.87 E-value=6.2e-22 Score=176.13 Aligned_cols=101 Identities=36% Similarity=0.568 Sum_probs=90.7
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..++||+|+|+ ++.|+|||.|||++||||++||.+++.|+....|.|+++++++|+.+|+|||||.+++..+
T Consensus 172 ~~~~Dv~l~v~--------~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~ 243 (312)
T 3hqi_A 172 SRFTDCCLCVA--------GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 243 (312)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHH
T ss_pred CCCCceEEEEC--------CEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHH
Confidence 46899999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDNM 208 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~ 208 (252)
++.+|+.+|++| +++.|+..|.++|.+++
T Consensus 244 ~~~~ll~~A~~~--~~~~l~~~c~~~l~~~~ 272 (312)
T 3hqi_A 244 MADDLLAAADKY--ALERLKVMCEDALCSNL 272 (312)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHccC
Confidence 999999999999 89999999999888653
No 14
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=158.12 Aligned_cols=102 Identities=35% Similarity=0.564 Sum_probs=92.9
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.+++.++....|.++++++++|+.+|+|+|||.+.++.+
T Consensus 23 ~~~~Dv~l~v~--------~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 94 (145)
T 4eoz_A 23 SRFTDCCLCVA--------GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDK 94 (145)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGG
T ss_pred CCCcceEEEEC--------CEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHH
Confidence 46899999999 8999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
++.+++.+|++| +++.|++.|.++|.+++.
T Consensus 95 ~~~~ll~~A~~~--~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 95 MADDLLAAADKY--ALERLKVMCEDALCSNLS 124 (145)
T ss_dssp THHHHHHHHHHT--TCHHHHHHHHCC------
T ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHHhCC
Confidence 999999999999 999999999999997654
No 15
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.86 E-value=8.9e-22 Score=151.81 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=87.2
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..+|||+|+++ ++.|+|||.||+++|+||++||.+ ....|.++++++++|+.+|+|+|||.+.++.+
T Consensus 25 ~~~~Dv~l~v~--------~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~ 91 (119)
T 2q81_A 25 GLLCDCTFVVD--------GVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPE 91 (119)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCcceEEEEC--------CEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHH
Confidence 56899999999 899999999999999999999985 24578889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLIT 205 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~ 205 (252)
++.+|+.+|++| +++.|++.|.+||.
T Consensus 92 ~~~~ll~~A~~l--~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 92 NVDDVLAVATFL--QMQDIITACHALKS 117 (119)
T ss_dssp THHHHHHHHHHT--TCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 999999999999 99999999999984
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.86 E-value=1.4e-22 Score=157.37 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=87.5
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecC-CCHHHHHHHHHHHhcCcccCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISD-VSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~d-vs~~~f~~lL~ylYtg~~~~~~ 176 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++.+ ...|.+++ +++++|+.+|+|+|||++.++.
T Consensus 30 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~ 99 (125)
T 3ohu_A 30 DILCDVTLIVE--------RKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSR 99 (125)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECT
T ss_pred CCccceEEEEC--------CEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECH
Confidence 56999999999 8999999999999999999999998876 67899998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHH
Q 025481 177 QLACDLLELAEKYQHNAKQLLEAALSL 203 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L~~~c~~~ 203 (252)
+++.+|+.+|++| ++..|++.|.+|
T Consensus 100 ~~v~~ll~~A~~l--~i~~L~~~C~~~ 124 (125)
T 3ohu_A 100 ENIREVIRCAEFL--RMHNLEDSCFSF 124 (125)
T ss_dssp TTHHHHHHHHHHH--TBSSCTTSSCCC
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHh
Confidence 9999999999999 888888877654
No 17
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.85 E-value=2.8e-22 Score=155.71 Aligned_cols=96 Identities=17% Similarity=0.319 Sum_probs=86.3
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEec-CCCHHHHHHHHHHHhcCcccCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKIS-DVSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~-dvs~~~f~~lL~ylYtg~~~~~~ 176 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.+++.++ ..|.++ ++++++|+.+|+|+|||.+.++.
T Consensus 27 ~~~~Dv~l~v~--------~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~ 96 (124)
T 2ihc_A 27 DVLCDVTIFVE--------GQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSK 96 (124)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEET
T ss_pred CCCcCEEEEEC--------CEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCH
Confidence 56899999999 89999999999999999999999988764 578894 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 025481 177 QLACDLLELAEKYQHNAKQLLEAALSLIT 205 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L~~~c~~~i~ 205 (252)
+++.+|+.+|++| +++.|++.|.+||.
T Consensus 97 ~~v~~ll~~A~~~--~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 97 ENVDEVCKCVEFL--SVHNIEESCFQFLK 123 (124)
T ss_dssp TTHHHHHHHHHHH--TBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHHH--CCHHHHHHHHHHHh
Confidence 9999999999999 99999999988764
No 18
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.85 E-value=7.7e-22 Score=154.17 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=83.6
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEec-CCCHHHHHHHHHHHhcCcccCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKIS-DVSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~-dvs~~~f~~lL~ylYtg~~~~~~ 176 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.++ ....|.|+ ++++++|+.+|+|+|||.+.++.
T Consensus 31 ~~~~Dv~l~v~--------~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~ 98 (129)
T 3ga1_A 31 GLYCDVSVVVK--------GHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNV 98 (129)
T ss_dssp TCSCCEEEEET--------TEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCT
T ss_pred CCCcceEEEEC--------CEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCH
Confidence 56899999998 8999999999999999999999875 56789997 99999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481 177 QLACDLLELAEKYQHNAKQLLEAALSLITDN 207 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~ 207 (252)
+++.+|+.+|++| ++..|++.|.+|+.+.
T Consensus 99 ~~~~~ll~~A~~~--~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 99 GDQDLLMYTAGFL--QIQEIMEKGTEFFLKV 127 (129)
T ss_dssp TTHHHHHHHHHHT--TBTTSSCC--------
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999998764
No 19
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.83 E-value=5.8e-20 Score=141.15 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=80.0
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcc-cCCh
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEA-CLDE 176 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~-~~~~ 176 (252)
..+|||+|+|+ ++.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||.+ .++.
T Consensus 29 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~ 95 (116)
T 3fkc_A 29 GLFCDVTVIVE--------DRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRS 95 (116)
T ss_dssp TTTCCEEEEET--------TEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCH
T ss_pred CCceeEEEEEC--------CEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCH
Confidence 56999999998 8999999999999999999999874 56899999999999999999999999 6999
Q ss_pred HHHHHHHHHHHHhhhchHHHHH
Q 025481 177 QLACDLLELAEKYQHNAKQLLE 198 (252)
Q Consensus 177 ~~~~~ll~~A~~y~~~~~~L~~ 198 (252)
+++.+++.+|++| +++.|++
T Consensus 96 ~~~~~ll~~A~~l--~i~~L~~ 115 (116)
T 3fkc_A 96 DLLDELIKSGQLL--GVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHHH--TCHHHHT
T ss_pred HHHHHHHHHHHHh--CccccCc
Confidence 9999999999999 8887764
No 20
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.82 E-value=1e-20 Score=146.20 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=82.8
Q ss_pred CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
..||||+|+|+ ++.|+|||.|||++|+||++ ....|.|+++++++|+.+|+|+|||++.++.+
T Consensus 28 ~~~~Dv~l~v~--------~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~ 90 (119)
T 3m5b_A 28 PALCDTLITVG--------SQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPG 90 (119)
T ss_dssp TTTCCEEEEET--------TEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGG
T ss_pred CCCcceEEEEC--------CEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHH
Confidence 35899999999 89999999999999999984 34679999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 025481 178 LACDLLELAEKYQHNAKQLLEAALSLITD 206 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~ 206 (252)
++.+++.+|++| ++..|++.|.+++..
T Consensus 91 ~v~~ll~aA~~l--~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 91 ELRPLQEAARAL--GVQSLEEACWRARGD 117 (119)
T ss_dssp GHHHHHHHHHHT--TCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHhh
Confidence 999999999999 999999999998764
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.50 E-value=1.7e-13 Score=110.76 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=83.8
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcC-ccc-cCCcceEEecCCCHHHHHHHHHHHhcCc---------
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDN-EME-ESRSGTIKISDVSYDALRAFVNYLYTAE--------- 171 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~-~~~-e~~~~~I~l~dvs~~~f~~lL~ylYtg~--------- 171 (252)
|+|+..+ |+.|.+||.| |+.|+||++||.+ ++. |+....|.|++|+..+++.+++|+|++.
T Consensus 3 v~L~ssD-------g~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~ 74 (159)
T 2ast_A 3 IKLQSSD-------GEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDD 74 (159)
T ss_dssp EEEECTT-------SCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----
T ss_pred EEEEcCC-------CCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccc
Confidence 6676654 8999999999 8999999999987 566 6667889999999999999999999987
Q ss_pred -----------------ccCChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 172 -----------------ACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 172 -----------------~~~~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
+.++.+++.+|+.+|++| +.+.|.+.|-++++..+.
T Consensus 75 ~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL--~I~~Lld~~c~~va~~i~ 127 (159)
T 2ast_A 75 ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYL--DIKGLLDVTCKTVANMIK 127 (159)
T ss_dssp ------CCCCCHHHHHHTCSCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHS
T ss_pred cccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHc
Confidence 677889999999999999 999999999999987765
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.40 E-value=1.1e-12 Score=97.44 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=65.2
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcC--ccccCCcceEEecCCCHHHHHHHHHHHh-----c---Ccc
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDN--EMEESRSGTIKISDVSYDALRAFVNYLY-----T---AEA 172 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~--~~~e~~~~~I~l~dvs~~~f~~lL~ylY-----t---g~~ 172 (252)
|+|+..+ |+.|.+||.| |+.|+||++||.+ .+.|+....|.|++|++.+++.+++|+| + +.+
T Consensus 4 v~L~SsD-------g~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i 75 (97)
T 4ajy_C 4 VKLISSD-------GHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 75 (97)
T ss_dssp EEEECTT-------CCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred EEEEecC-------CcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCC
Confidence 5566554 8999999999 9999999999987 5777778899999999999999999999 5 677
Q ss_pred c---CChHHHHHHHHHHHHh
Q 025481 173 C---LDEQLACDLLELAEKY 189 (252)
Q Consensus 173 ~---~~~~~~~~ll~~A~~y 189 (252)
+ ++.+++.+|+.+|++|
T Consensus 76 ~~~~i~~~~l~eLl~AAnyL 95 (97)
T 4ajy_C 76 PEFPIAPEIALELLMAANFL 95 (97)
T ss_dssp CCCCCCGGGHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHhhh
Confidence 7 8899999999999998
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.13 E-value=1.7e-10 Score=91.27 Aligned_cols=93 Identities=14% Similarity=0.225 Sum_probs=81.9
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCc-----------
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAE----------- 171 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~----------- 171 (252)
|+|+..+ |+.|.+|+.+ |..|.+|++||.... ...|.|++|+..+++.+++|+|+..
T Consensus 4 v~L~SsD-------g~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~ 71 (141)
T 1fs1_B 4 IKLQSSD-------GEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDEN 71 (141)
T ss_dssp EEEECTT-------SCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHTTCC--------
T ss_pred EEEEeCC-------CCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccc
Confidence 6676654 8999999998 899999999997531 4579999999999999999999865
Q ss_pred ---------------ccCChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 172 ---------------ACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 172 ---------------~~~~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
+.++.+++.+|+.+|++| +.+.|.+.|-++++..+.
T Consensus 72 ~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL--~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 72 KEKRTDDIPVWDQEFLKVDQGTLFELILAANYL--DIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp ---------HHHHHHTCSCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhHHHHHHHhCCHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHc
Confidence 567789999999999999 999999999999998765
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.93 E-value=1.9e-10 Score=92.87 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=50.4
Q ss_pred CceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCc-------------------------
Q 025481 117 AVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAE------------------------- 171 (252)
Q Consensus 117 ~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~------------------------- 171 (252)
|+.|.+|+.+ |..|++|++||.... ....|+|++|+..+++.+++|+|+..
T Consensus 13 g~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~ 88 (160)
T 2p1m_A 13 GESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDA 88 (160)
T ss_dssp -------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC------------------------------
T ss_pred CCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHH
Confidence 8999999998 899999999998642 34579999999999999999999875
Q ss_pred --ccCChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 172 --ACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 172 --~~~~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
+.++.+++.+|+.+|++| +.+.|.+.|-++++..+.
T Consensus 89 ~Fl~vd~~~l~eLi~AAnyL--~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 89 DFMKIDQATLFELILAANYL--NIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp ------------CHHHHHHT--TCHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHc
Confidence 346678999999999999 999999999999987654
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.71 E-value=6.3e-08 Score=71.85 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=66.2
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCc-----------
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAE----------- 171 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~----------- 171 (252)
|+|+..+ |..|.+++.+ |..|.+++.||..++ +.....|+|++|+..+++.+++|+|...
T Consensus 6 v~L~SsD-------g~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~ 76 (99)
T 1hv2_A 6 VTLVSKD-------DKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDE 76 (99)
T ss_dssp EEEEETT-------TEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred EEEEecC-------CCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCcccccc
Confidence 5666654 8999999997 899999999998755 5555789999999999999999998743
Q ss_pred ---ccCChHHHHHHHHHHHHh
Q 025481 172 ---ACLDEQLACDLLELAEKY 189 (252)
Q Consensus 172 ---~~~~~~~~~~ll~~A~~y 189 (252)
..++.+.+.+|+.+|+++
T Consensus 77 i~~w~vd~~~lfeLi~AAnyL 97 (99)
T 1hv2_A 77 IPEFEIPTEMSLELLLAADYL 97 (99)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHh
Confidence 245779999999999987
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.65 E-value=6.5e-08 Score=71.36 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCc--cccCCcceEEecCCCHHHHHHHHHHHhcCc---------
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE--MEESRSGTIKISDVSYDALRAFVNYLYTAE--------- 171 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~--~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~--------- 171 (252)
|+|+..+ |..|.+++.+ |..|.+++.||... +.|+....|+|++|+..+++.+++|+|...
T Consensus 3 v~L~SsD-------g~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i 74 (96)
T 2fnj_C 3 VKLISSD-------GHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 74 (96)
T ss_dssp EEEECTT-------SCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred EEEEecC-------CCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccC
Confidence 5566553 8999999997 79999999999762 356666789999999999999999998743
Q ss_pred --ccCChHHHHHHHHHHHHh
Q 025481 172 --ACLDEQLACDLLELAEKY 189 (252)
Q Consensus 172 --~~~~~~~~~~ll~~A~~y 189 (252)
..++.+.+.+|+.+|+++
T Consensus 75 ~~w~vd~~~l~eLi~AAnyL 94 (96)
T 2fnj_C 75 PEFPIAPEIALELLMAANFL 94 (96)
T ss_dssp CCCCCCTTTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHh
Confidence 245778999999999987
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.58 E-value=4.7e-07 Score=73.53 Aligned_cols=98 Identities=18% Similarity=0.325 Sum_probs=77.9
Q ss_pred cEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccc----cCCcceEEecCCCHHHHHHHHHHHhcCc------
Q 025481 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEME----ESRSGTIKISDVSYDALRAFVNYLYTAE------ 171 (252)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~----e~~~~~I~l~dvs~~~f~~lL~ylYtg~------ 171 (252)
-|+|+..+ |..|.+++.+ |..|.+++.|+..... +.....|.|++|+..+++.+++|++...
T Consensus 8 ~i~L~SsD-------G~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~ 79 (169)
T 3v7d_A 8 NVVLVSGE-------GERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPD 79 (169)
T ss_dssp EEEEECTT-------CCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC
T ss_pred eEEEEeCC-------CCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcc
Confidence 46666654 8999999998 6889999999975422 1233789999999999999999997643
Q ss_pred -------------------ccCChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 025481 172 -------------------ACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMD 209 (252)
Q Consensus 172 -------------------~~~~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~ 209 (252)
+.++...+.+|+.+|++| +.+.|.+.|-+.++..+.
T Consensus 80 ~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyL--dIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 80 EDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYL--NIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp --------CCCCCHHHHHHTCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccHHHHHHHcCCHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHc
Confidence 234568899999999999 999999999999986543
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.29 E-value=2.4e-06 Score=64.64 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=62.1
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCc--cccCCcceEEecCCCHHHHHHHHHHHhcCc---------
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE--MEESRSGTIKISDVSYDALRAFVNYLYTAE--------- 171 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~--~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~--------- 171 (252)
|+|+..+ |..|.+++.+ |..|..++.|+... +.+.....|+|++|+..+++.+++|+|...
T Consensus 19 v~L~SsD-------G~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i 90 (112)
T 1vcb_B 19 VKLISSD-------GHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 90 (112)
T ss_dssp EEEECTT-------SCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EEEEcCC-------CCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCC
Confidence 5666554 8999999995 68999999999853 345555789999999999999999997643
Q ss_pred --ccCChHHHHHHHHHHHHh
Q 025481 172 --ACLDEQLACDLLELAEKY 189 (252)
Q Consensus 172 --~~~~~~~~~~ll~~A~~y 189 (252)
..++.+.+.+|+.+|++|
T Consensus 91 ~~w~vd~~~lfeLi~AAnyL 110 (112)
T 1vcb_B 91 PEFPIAPEIALELLMAANFL 110 (112)
T ss_dssp CCCCCCHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHh
Confidence 246779999999999987
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.14 E-value=1.7e-05 Score=59.44 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=74.9
Q ss_pred cEEEEeccCCCCCCCCceEehhHHHHhhcc-HHHHHhhcCccc----cCCcceEEecCCCHHHHHHHHHHHhcCcccCCh
Q 025481 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRS-PVFKAMLDNEME----ESRSGTIKISDVSYDALRAFVNYLYTAEACLDE 176 (252)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~f~aHk~ILaarS-~~F~~mf~~~~~----e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~ 176 (252)
=|+|.|| |+.|...+..|+... .+|.+||.+... ....+.+-| |-+|..|+.+|.|+.+|.+.++.
T Consensus 7 ~v~LNVG--------G~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~ 77 (107)
T 3drz_A 7 WVRLNVG--------GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK 77 (107)
T ss_dssp EEEEEET--------TEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCT
T ss_pred EEEEEEC--------CEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCC
Confidence 3688899 999999999998775 478999876421 112345655 78999999999999999998755
Q ss_pred HH-HHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 025481 177 QL-ACDLLELAEKYQHNAKQLLEAALSLITD 206 (252)
Q Consensus 177 ~~-~~~ll~~A~~y~~~~~~L~~~c~~~i~~ 206 (252)
+. ...++.-|.+| ++..|.+.|.+-|.+
T Consensus 78 ~~~~~~l~~Ea~fy--~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 78 DLAEEGVLEEAEFY--NITSLIKLVKDKIRE 106 (107)
T ss_dssp TSCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence 32 46788999999 999999999887754
No 30
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=0.0001 Score=54.69 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred cccCChHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481 171 EACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVE 222 (252)
Q Consensus 171 ~~~~~~~~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~ 222 (252)
.-.++.+|+..++.+|+.| ++..|.+.|.+||.+||.++..+++|..|+.
T Consensus 5 ~~~L~~~NCl~i~~~A~~~--~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~ 54 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRH--SDPELYTAAKHCAKTHLAQLQNTEEFLHLPH 54 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHT--TCHHHHHHHHHHHHHTCHHHHTSHHHHHSCH
T ss_pred hccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHhcccHhhCCH
Confidence 3456789999999999999 9999999999999999999999999999985
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.69 E-value=0.0027 Score=52.55 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=77.3
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhcc-HHHHHhhcCcc--c--cCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRS-PVFKAMLDNEM--E--ESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS-~~F~~mf~~~~--~--e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
|+|-|| |+.|...+..|.... .+|.+||.+.. . ....+.+-| |-+|..|+.+|.|+-+|.+.++.+
T Consensus 14 V~LNVG--------G~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~ 84 (202)
T 3drx_A 14 VRLNVG--------GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKD 84 (202)
T ss_dssp EEEEET--------TEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTT
T ss_pred EEEEEC--------CEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCC
Confidence 578899 999999999997654 37888987642 1 112345555 679999999999999999987553
Q ss_pred H-HHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHhC
Q 025481 178 L-ACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTK 213 (252)
Q Consensus 178 ~-~~~ll~~A~~y~~~~~~L~~~c~~~i~~~~~~v~~ 213 (252)
. ...++.-|.+| ++..|.+.|...|.+.-.....
T Consensus 85 ~~~~~l~eEA~Fy--gL~~Lv~~l~~~i~ere~~~~~ 119 (202)
T 3drx_A 85 LAEEGVLEEAEFY--NITSLIKLVKDKIRERDSKTSQ 119 (202)
T ss_dssp SCHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHC--CcHHHHHHHHHHHHHHhccccc
Confidence 2 35688899999 9999999999999876555543
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=93.65 E-value=0.048 Score=40.95 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=57.8
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhcc-HHHHHhhcCcc-ccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH-HH
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRS-PVFKAMLDNEM-EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ-LA 179 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS-~~F~~mf~~~~-~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~-~~ 179 (252)
|+|-|| |+.|...+..|.... ..|.+|+.... .....+.+-| |=+|..|+.+|.|+-+|.+.++.+ ..
T Consensus 7 V~LNVG--------G~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~ 77 (115)
T 3kvt_A 7 VIINVG--------GIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCG 77 (115)
T ss_dssp EEEEET--------TEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCH
T ss_pred EEEEEC--------CEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccH
Confidence 688899 999999999997653 34556665421 1123455655 679999999999999999977653 35
Q ss_pred HHHHHHHHHh
Q 025481 180 CDLLELAEKY 189 (252)
Q Consensus 180 ~~ll~~A~~y 189 (252)
..++.-|.+|
T Consensus 78 ~~~~~Ea~fy 87 (115)
T 3kvt_A 78 PLFEEELEFW 87 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6788888888
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=92.77 E-value=0.19 Score=38.13 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=63.2
Q ss_pred cEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCc----cccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE----MEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~----~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
=|+|-|| |+.|..-+..|.... ..||... ......+.+-| |=++..|+.+|.|+-+|.+.++.+
T Consensus 14 ~V~LNVG--------G~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~ 81 (124)
T 1s1g_A 14 LIVLNVS--------GRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRY 81 (124)
T ss_dssp EEEEEET--------TEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTT
T ss_pred EEEEEeC--------CEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCC
Confidence 3678899 999999999996542 2233321 11122345555 569999999999999999987654
Q ss_pred -HHHHHHHHHHHhhhchHHH--HHHHHHHHHHhH
Q 025481 178 -LACDLLELAEKYQHNAKQL--LEAALSLITDNM 208 (252)
Q Consensus 178 -~~~~ll~~A~~y~~~~~~L--~~~c~~~i~~~~ 208 (252)
.+..++.-|++| ++..+ ...|..-..+..
T Consensus 82 ~~~~~l~~Ea~fy--~i~~l~l~~cC~~~~~~~~ 113 (124)
T 1s1g_A 82 ECISAYDDELAFY--GILPEIIGDCCYEEYKDRK 113 (124)
T ss_dssp SCHHHHHHHHHHT--TCCGGGBCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHc--CCChHHHHHHHHHHHHHHH
Confidence 467788899999 66554 444555444433
No 34
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=91.14 E-value=0.16 Score=37.40 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=60.5
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCcc----ccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH-
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEM----EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ- 177 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~----~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~- 177 (252)
|+|-|| |+.|...+..|..... .||.... .....+.+-| |=+|..|+.+|.|+-+|.+.++.+
T Consensus 2 V~LNVG--------G~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~ 69 (105)
T 1nn7_A 2 IVLNVS--------GTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHE 69 (105)
T ss_dssp EEEEET--------TEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTS
T ss_pred EEEEEC--------CEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCc
Confidence 688899 9999999999975432 2333311 1122345555 569999999999999999887653
Q ss_pred HHHHHHHHHHHhhhchHHH--HHHHHHHHH
Q 025481 178 LACDLLELAEKYQHNAKQL--LEAALSLIT 205 (252)
Q Consensus 178 ~~~~ll~~A~~y~~~~~~L--~~~c~~~i~ 205 (252)
.+..++.-|++| ++..+ ...|..-..
T Consensus 70 ~~~~l~~Ea~fy--~i~~l~~~~cc~~~~~ 97 (105)
T 1nn7_A 70 CISAYDEELAFF--GLIPEIIGDCCYEEYK 97 (105)
T ss_dssp CHHHHHHHHHHH--TCCSCCBCHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 367788889999 55543 344444333
No 35
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=89.61 E-value=0.2 Score=36.56 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=56.0
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhcc-HHHHHhhcCc-cccCCcceEEecCCCHHHHHHHHHHHhc-CcccCChH-H
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRS-PVFKAMLDNE-MEESRSGTIKISDVSYDALRAFVNYLYT-AEACLDEQ-L 178 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS-~~F~~mf~~~-~~e~~~~~I~l~dvs~~~f~~lL~ylYt-g~~~~~~~-~ 178 (252)
|+|-|| |+.|...+..|...- ..+.+|+... ......+.+-+ |=++..|+.+|.|+-+ |++.++.+ .
T Consensus 3 v~LNVG--------G~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~ 73 (100)
T 1t1d_A 3 VVINVS--------GLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVP 73 (100)
T ss_dssp EEEEET--------TEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSC
T ss_pred EEEEEC--------CEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCC
Confidence 678899 999999999996442 1222333211 11123455655 6799999999999999 89877543 3
Q ss_pred HHHHHHHHHHhhhchHH
Q 025481 179 ACDLLELAEKYQHNAKQ 195 (252)
Q Consensus 179 ~~~ll~~A~~y~~~~~~ 195 (252)
+..++.-|++| ++..
T Consensus 74 ~~~~~~Ea~fy--~i~~ 88 (100)
T 1t1d_A 74 LDVFSEEIKFY--ELGE 88 (100)
T ss_dssp HHHHHHHHHHT--TCCH
T ss_pred HHHHHHHHHHc--CCCH
Confidence 56788888998 5544
No 36
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=89.28 E-value=0.56 Score=36.30 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=57.4
Q ss_pred cEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCcc----ccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEM----EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ 177 (252)
Q Consensus 102 Dv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~----~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~ 177 (252)
=|+|-|| |+.|...+..|.... ..||.... .....+.+-| |=++..|+.+|.|+-+|.+.++.+
T Consensus 36 ~V~LNVG--------G~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~ 103 (140)
T 2nz0_B 36 LIVLNVS--------GRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRY 103 (140)
T ss_dssp EEEEEET--------TEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTT
T ss_pred EEEEEEC--------CEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCC
Confidence 4688899 999999999997542 23443311 1122345555 569999999999999999987553
Q ss_pred -HHHHHHHHHHHhhhchHHH
Q 025481 178 -LACDLLELAEKYQHNAKQL 196 (252)
Q Consensus 178 -~~~~ll~~A~~y~~~~~~L 196 (252)
.+..++.-|++| ++..+
T Consensus 104 ~~~~~l~eEa~fy--~i~~l 121 (140)
T 2nz0_B 104 ECISAYDDELAFY--GILPE 121 (140)
T ss_dssp SCHHHHHHHHHHH--TCCGG
T ss_pred cCHHHHHHHHHHc--CCChH
Confidence 367788889999 55443
No 37
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=50.47 E-value=4.3 Score=25.62 Aligned_cols=26 Identities=15% Similarity=0.655 Sum_probs=21.0
Q ss_pred hhhhhhhhhhhcCCCCCCchHHhhhhh
Q 025481 31 TMRCISCREEYGTRDAGTCKECYEEAS 57 (252)
Q Consensus 31 ~~~c~~c~~~~~~~~~~~c~~c~~~~~ 57 (252)
.-.|..|+ ..+++-..+|..|+....
T Consensus 11 ~WkC~~C~-k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 11 EWQCTECK-KFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp CEECSSSC-CEECSSCCBCTTTCCBCC
T ss_pred eeeccccc-ccCCCccchhHHHHHhhc
Confidence 46799999 778888999999987643
No 38
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=39.12 E-value=25 Score=32.68 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=53.7
Q ss_pred EEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCc-----cccCCcceEEecCCCHHHHHHHHHHHhc-CcccCCh
Q 025481 103 VVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNE-----MEESRSGTIKISDVSYDALRAFVNYLYT-AEACLDE 176 (252)
Q Consensus 103 v~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~-----~~e~~~~~I~l~dvs~~~f~~lL~ylYt-g~~~~~~ 176 (252)
|+|-|| |+.|...+..|...- ..++... ......+.+-+ |=++..|+.+|.|+.+ |++..+.
T Consensus 54 v~lNVg--------G~~f~t~~~tL~~~p---~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~ 121 (514)
T 2r9r_B 54 VVINIS--------GLRFETQLKTLAQFP---ETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPV 121 (514)
T ss_dssp EEEEET--------TEEEEEEHHHHTTST---TSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCT
T ss_pred EEEEeC--------CEEEEecHHHHhcCC---CCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCC
Confidence 677899 999999999995432 2222221 11123345555 6799999999999999 9987755
Q ss_pred HH-HHHHHHHHHHhhhchHH
Q 025481 177 QL-ACDLLELAEKYQHNAKQ 195 (252)
Q Consensus 177 ~~-~~~ll~~A~~y~~~~~~ 195 (252)
+. ...++.=|++| +..+
T Consensus 122 ~~~~~~~~~E~~f~--~i~~ 139 (514)
T 2r9r_B 122 NVPLDIFSEEIRFY--ELGE 139 (514)
T ss_dssp TSCHHHHHHHHHHT--TCCH
T ss_pred cccHHHHHHHHHhc--CCCH
Confidence 43 45567778888 5443
No 39
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=37.48 E-value=12 Score=21.67 Aligned_cols=8 Identities=100% Similarity=1.464 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 025481 15 SGSGSGSG 22 (252)
Q Consensus 15 ~~~~~~~~ 22 (252)
||+|||++
T Consensus 3 sgsgsgsg 10 (42)
T 3kl4_B 3 SGSGSGSG 10 (42)
T ss_pred CCCCCCCc
Confidence 34444443
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=32.48 E-value=11 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=21.4
Q ss_pred cchhhhhhhhhhhcCCCCCCchHHhhhhh
Q 025481 29 SETMRCISCREEYGTRDAGTCKECYEEAS 57 (252)
Q Consensus 29 ~~~~~c~~c~~~~~~~~~~~c~~c~~~~~ 57 (252)
=+|.||..|...+.......|-.|.....
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 57788888888776556678888876543
No 41
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=31.19 E-value=17 Score=21.77 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=10.1
Q ss_pred CCCCCchHHhhhh
Q 025481 44 RDAGTCKECYEEA 56 (252)
Q Consensus 44 ~~~~~c~~c~~~~ 56 (252)
.-.|+|.+||+..
T Consensus 24 kc~GyCNeC~~fK 36 (46)
T 2eqf_A 24 KCNGYCNECFQFK 36 (46)
T ss_dssp GGTBSCHHHHHHH
T ss_pred hhhhhhHHHHhhH
Confidence 3469999999863
No 42
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.56 E-value=11 Score=25.18 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=14.0
Q ss_pred CcccccchhhhhhhhhhhcCCC
Q 025481 24 ESEAESETMRCISCREEYGTRD 45 (252)
Q Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~ 45 (252)
++++......|.-|.+.+..+-
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~ 29 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPV 29 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEE
T ss_pred CcccCCCCCCCcCCCchhcCee
Confidence 3344445578888888776543
No 43
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.43 E-value=19 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCCCCCCcccccchhhhhhhhhhhc
Q 025481 17 SGSGSGLESEAESETMRCISCREEYG 42 (252)
Q Consensus 17 ~~~~~~~~~~~~~~~~~c~~c~~~~~ 42 (252)
|-|+++.+.+++....+|+ |+..+.
T Consensus 2 ~~~~~~~e~~~~~~~~~C~-C~~~~~ 26 (72)
T 1wee_A 2 SSGSSGMERGVDNWKVDCK-CGTKDD 26 (72)
T ss_dssp CCCSCCCSCSSCSSEECCT-TCCCSC
T ss_pred CCccccccCCCCCcceEee-CCCccC
Confidence 3344455566677779996 887653
No 44
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=24.13 E-value=12 Score=25.15 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=17.2
Q ss_pred cchhhhhhhhhh--hcCCCCCCchHHh
Q 025481 29 SETMRCISCREE--YGTRDAGTCKECY 53 (252)
Q Consensus 29 ~~~~~c~~c~~~--~~~~~~~~c~~c~ 53 (252)
...-.|..|+.+ ....++..|.+|-
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCC
Confidence 344689999987 4446667777763
Done!