BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025482
(252 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/227 (92%), Positives = 219/227 (96%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFVSPEGLRLDGRRP EMRQ+R EIG VAKADGSA FEMGNTKVIAAVYGPREV+N+SQ
Sbjct: 1 MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+SDQALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF
Sbjct: 61 QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VTVGILP LDKVTLLQMDAKLP + FE+VMQLAIEGCKA+ANYIREV
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREV 227
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/227 (91%), Positives = 220/227 (96%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLRLDGRRP EMRQLRA+IG V+KADGSAVFEMGNTKVIAAVYGPREVQN+SQ
Sbjct: 1 MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+ DQALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDI+
Sbjct: 61 QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VTVGILP LDKVTLLQMDAKLP +TFE+VMQLA+EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREI 227
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/227 (89%), Positives = 218/227 (96%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLRLDGRRP EMRQ+RAEIG V+KADGSA+FEMGNTKVIAAVYGPREVQN++Q
Sbjct: 1 MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+S ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL+PRSQIDI+
Sbjct: 61 QISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VT+GILP LDKVTLLQMD+KLP + E+VMQLAIEGCKA+ANYIREV
Sbjct: 181 VTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREV 227
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/227 (90%), Positives = 219/227 (96%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFV+PEGLRLDGRRP EMRQLRA+IG VAKADGSAVFEMGNTKVIAAVYGPREVQN+SQ
Sbjct: 1 MEFVNPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q++DQALVRCEYSMANFSTGDR RKPKGDRRSTEISLVIRQ ME CILT+LMPRSQIDI+
Sbjct: 61 QINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRD+VTSCSAG+LNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VTVGILP LDKVTLLQMDAKLP +TFE+VMQLA+EGCKA+ANYIREV
Sbjct: 181 VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREV 227
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/227 (89%), Positives = 216/227 (95%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLR DGRRP EMRQ+RAEIG V+KADGSA+FEMGNTKVIAAVYGPREVQN+SQ
Sbjct: 1 MEYVSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
QMSD+ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDI+
Sbjct: 61 QMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPM D+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VTVGILP LDKVTLLQMD+KLP + E+VMQLA EGCKA+ANYIRE+
Sbjct: 181 VTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREI 227
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/227 (88%), Positives = 216/227 (95%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLRLDGRRP EMRQ+RAEIG V+KADGSA+FEMGNTKVIAAVYGPREVQN+SQ
Sbjct: 1 MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+S ALVRCEY MANFSTGDRMRK KGDRRSTEISLVIRQTMEACILTHL+PRSQIDI+
Sbjct: 61 QISSHALVRCEYCMANFSTGDRMRKSKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VT+GILP LDKVTLLQMD+KLP + E+VMQLAIEGCKA+ANYIRE+
Sbjct: 181 VTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREI 227
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/227 (88%), Positives = 214/227 (94%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFV+PEGLR DGRRP E+R++RAEIG V+KA+GSAVFEMGNTKV+AAVYGPREVQNKSQ
Sbjct: 1 MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
QMS+QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIF
Sbjct: 61 QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRDIVTSCSAGYLNS LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VTVG LP LDKVTLLQMDAKLP + FEDVM+LAIEGCKA+A YIR V
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNV 227
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/229 (84%), Positives = 208/229 (90%), Gaps = 2/229 (0%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G VA+ADGSA+FEMGNT+VIAAVYGPREVQNK
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S ALVRCEY MA+FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMPRSQID
Sbjct: 61 QQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
IFVQVLQADGGTR+ACINAATLAL DAGIPMRDIVTSCSAGYL STPLLDLNY+EDSAGG
Sbjct: 121 IFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGG 180
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
PDVTVG L +DKVTLLQMDAKLP +TFE VM LAIEGCKA+ANYIREV
Sbjct: 181 PDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIREV 229
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/229 (82%), Positives = 209/229 (91%), Gaps = 2/229 (0%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G V++ADGSA+FEMGNT+VIAAVYGPREVQN+S
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRS 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S +ALVRCEY MA FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMP SQID
Sbjct: 61 QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
IFVQVLQADGGTRSACINAATLAL DAGIPMRDIVTSCSAGYL S+PLLDLNY+EDSAGG
Sbjct: 121 IFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSSPLLDLNYIEDSAGG 180
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
PDVTVGIL +DKVTLLQMDAKLP +TFE VM+LAIEGCKA+A YIRE+
Sbjct: 181 PDVTVGILAKMDKVTLLQMDAKLPMDTFETVMELAIEGCKAIATYIREI 229
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/227 (81%), Positives = 208/227 (91%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME++SPEGLRLDGRRP EMRQL A++G V KADGSA+FEMGNTKVIAAVYGP EVQNK+Q
Sbjct: 1 MEYISPEGLRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+ DQALVRCEYSMANFSTGDR R+ KGDRR+TEISLVIRQTMEA ILTHLMPR+QIDIF
Sbjct: 61 QLPDQALVRCEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPM D+VTSC+AGYLNSTPLLD+NY+EDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMCDLVTSCAAGYLNSTPLLDMNYMEDSAGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
V VG++ +DK++LLQMD+KLP + FE VMQLAIEGCKA+ YI++V
Sbjct: 181 VAVGLMTKMDKLSLLQMDSKLPMDIFETVMQLAIEGCKAIVRYIQDV 227
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 209/229 (91%), Gaps = 2/229 (0%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G VA+ADGSA+FEMGNT+VIAAVYGPREVQNK
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S++ALVRCEY MA FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMPRSQID
Sbjct: 61 QQVNSNEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I+VQVLQADGGTRSACINAATLAL DAGIPMRDIVTSCSAGYL STPLLDLNY+EDSAGG
Sbjct: 121 IYVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGG 180
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGIL +DKVTLLQMDAKLP +TFE+VM LAIEGCKA+A YIREV
Sbjct: 181 SDVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIATYIREV 229
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 209/229 (91%), Gaps = 2/229 (0%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G VA+ADGSA+FEMGNT+VIAAVYGPREVQNK
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKG 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S++ALVRCEY MA FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMP SQID
Sbjct: 61 QQVNSNEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I+VQVLQADGGTRSACINAATLAL DAGIPMRDIVTSCSAGYL STPLLDLNY+EDSAGG
Sbjct: 121 IYVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGG 180
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGIL +DKVTLLQMDAKLP +TFE+VM LAIEGCKA+A+YIREV
Sbjct: 181 SDVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIASYIREV 229
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/229 (82%), Positives = 206/229 (89%), Gaps = 2/229 (0%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G VA+ADGSA+FEMGNT+VIAAVYGPREVQNK
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S +ALVRCEY MA FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMP SQID
Sbjct: 61 QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I+VQVLQADGGTRSACINAATLAL DAGIPMRDI TSCSAGYL STPLLDLNY+EDSAGG
Sbjct: 121 IYVQVLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGG 180
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGIL +DKVTLLQMDAKLP +TFE+VM LAIEGCKA+A YIREV
Sbjct: 181 SDVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREV 229
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/229 (82%), Positives = 205/229 (89%), Gaps = 2/229 (0%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G V +ADGSA+FEMGNT+VIAAVYGPREVQNK
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKG 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S +ALVRCEY MA FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMP SQID
Sbjct: 61 QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I+VQVLQADGGTRSACINAATLAL DAGIPMRDI TSCSAGYL STPLLDLNY+EDSAGG
Sbjct: 121 IYVQVLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGG 180
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGIL +DKVTLLQMDAKLP +TFE+VM LAIEGCKA+A YIREV
Sbjct: 181 SDVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREV 229
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/228 (82%), Positives = 201/228 (88%), Gaps = 2/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+V+PEGLRLDGRR EMRQ+ AE+G V+KADGSAVFEMGNTKVIAAVYGPRE+QNKSQ
Sbjct: 1 MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60
Query: 61 QM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q +D A+V CEYSMA FSTGDR R+ K DRRSTE+SLVIRQTMEACILT LMP SQIDI
Sbjct: 61 QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
F+QVLQADGGTRSACINAATLAL DAGIPMRD+ SCSAGYLNSTPLLDLNYVEDSAGG
Sbjct: 120 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 179
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGILP LDKVTLLQMDAKLP TFE V LA EGCKA+A IREV
Sbjct: 180 DVTVGILPKLDKVTLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/228 (82%), Positives = 201/228 (88%), Gaps = 2/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+V+PEGLRLDGRR EMRQ+ AE+G V+KADGSAVFEMGNTKVIAAVYGPRE+QNKSQ
Sbjct: 1 MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60
Query: 61 QM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q +D A+V CEYSMA FSTGDR R+ K DRRSTE+SLVIRQTMEACILT LMP SQIDI
Sbjct: 61 QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
F+QVLQADGGTRSACINAATLAL DAGIPMRD+ SCSAGYLNSTPLLDLNYVEDSAGG
Sbjct: 120 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 179
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGILP LDKV+LLQMDAKLP TFE V LA EGCKA+A IREV
Sbjct: 180 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREV 227
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/229 (80%), Positives = 200/229 (87%), Gaps = 8/229 (3%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME+V+P G R+DGRRP EMRQL+ E+G VA+ADGSA+FEMGNT+VIAAVYGPREVQNK
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG 60
Query: 60 QQM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
QQ+ S +ALVRCEY MA FSTGDR RKPKGDRRSTEISLVIRQTMEA ILTHLMP SQID
Sbjct: 61 QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I+VQVL RSACINAATLAL DAGIPMRDI TSCSAGYL STPLLDLNY+EDSAGG
Sbjct: 121 IYVQVL------RSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGG 174
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DVTVGIL +DKVTLLQMDAKLP +TFE+VM LAIEGCKA+A YIREV
Sbjct: 175 SDVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREV 223
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/189 (91%), Positives = 183/189 (96%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLRLDGRRP EMRQ+RAEIG V+KADGSA+FEMGNTKVIAAVYGPREVQN++Q
Sbjct: 1 MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+S ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL+PRSQIDI+
Sbjct: 61 QISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAATLAL DAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
Query: 181 VTVGILPTL 189
VT+GILP L
Sbjct: 181 VTLGILPKL 189
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 174/248 (70%), Positives = 194/248 (78%), Gaps = 30/248 (12%)
Query: 1 MEFVSP-EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV---- 55
ME+V+P G R+DGRRP EMRQL+ E+G VA+ADGSA+FEMGNT+VIAAVYGPREV
Sbjct: 1 MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHP 60
Query: 56 --------QNKSQQMSDQALVRCEYS--------MANFSTGDRMRKPKGDRRSTEISLVI 99
K+++ + R + S MA+FSTGDR RKPKGDRRSTEISLVI
Sbjct: 61 DYWLVRLISKKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISLVI 120
Query: 100 RQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159
RQTMEA ILTHLMPRSQIDIFVQVLQADGGTR+ACINAATLAL DAGIPMRDIVTSCSA
Sbjct: 121 RQTMEASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSA- 179
Query: 160 YLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
DLNY+EDSAGGPDVTVG L +DKVTLLQMDAKLP +TFE VM LAIEGCKA
Sbjct: 180 --------DLNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKA 231
Query: 220 VANYIREV 227
+ANYIRE+
Sbjct: 232 IANYIREL 239
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 161/225 (71%), Positives = 190/225 (84%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
EFVSPEGLRLDGRRP EMR L A +G V ADGSA+F MGNT+V+A VYGP EV NK+ Q
Sbjct: 4 EFVSPEGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQ 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D+ALVRCEYSMA FSTG+R R+ K DRR+TE+SLVI QT+EA I+THL+PRSQIDI+V
Sbjct: 64 LHDKALVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYV 123
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
QVLQADGGTR+ACINAA++AL DAGIPMRD+V SC+AGYLNSTPLLDLNY EDS GGPD+
Sbjct: 124 QVLQADGGTRAACINAASMALADAGIPMRDLVVSCAAGYLNSTPLLDLNYQEDSGGGPDL 183
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
VG P L+K++LLQMD+K+ TFE V++LA EG KAVA + RE
Sbjct: 184 VVGYFPKLEKLSLLQMDSKVSIETFEKVLELATEGAKAVATFTRE 228
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 178/230 (77%), Positives = 200/230 (86%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFV PEGLRLDGRRP EMRQL AE+G V A+GSA+FEMGNTKVIAAVYGP EV N+SQ
Sbjct: 1 MEFVGPEGLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+ D+ALVRCEYSMA FSTGDR RK KG+RRSTEISLVIRQT+EA ILT+LMP+SQIDI+
Sbjct: 61 QLWDRALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAA LAL +AGIPMRD+V SC+AGYLN TPLLDLNYVEDS GGPD
Sbjct: 121 VQVLQADGGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKF 230
VTV + P +DKV+LLQMD+K+P FE+V QLA EG KA A Y+REV +F
Sbjct: 181 VTVALFPKVDKVSLLQMDSKMPLEHFENVFQLAAEGAKAAARYMREVTRF 230
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/227 (78%), Positives = 198/227 (87%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFV PEGLRLDGRRP EMRQL AE+G V A+GSA+FEMGNTKVIAAVYGP EV N+SQ
Sbjct: 1 MEFVGPEGLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+ D+ALVRCEYSMA FSTGDR RK KG+RRSTEISLVIRQT+EA ILT+LMP+SQIDI+
Sbjct: 61 QLWDRALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTRSACINAA LAL +AGIPMRD+V SC+AGYLN TPLLDLNYVEDS GGPD
Sbjct: 121 VQVLQADGGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VTV + P +DKV+LLQMD+KLP FE+V QLA EG KA A Y+REV
Sbjct: 181 VTVALFPKVDKVSLLQMDSKLPLEHFENVFQLAAEGAKAAARYMREV 227
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/241 (62%), Positives = 192/241 (79%), Gaps = 1/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E++SPEGLR+DGRR E+R ++ ++ ++ADGSA +E GNT+V+AAVYGPREV+NKSQ
Sbjct: 5 IEYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+A++ CEYSMA FSTG+R R+ K DRRSTEIS+VIRQT E+ ILTHL PR+QIDIF
Sbjct: 65 MKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+QVLQADGGTR ACINAATLAL DAGIPM+D V SC+AG++ +PL DLNY+ED AGGPD
Sbjct: 125 MQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPD 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLLIAVDIVG 239
V + +LP DKVTLLQMD+KL + FE V++ AIEGCK + I E ++K V+ G
Sbjct: 185 VPIALLPKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKRG 244
Query: 240 L 240
L
Sbjct: 245 L 245
>gi|388502864|gb|AFK39498.1| unknown [Medicago truncatula]
Length = 180
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/166 (89%), Positives = 157/166 (94%)
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
MSD+ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDI+V
Sbjct: 1 MSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYV 60
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
QVLQADGGTRSACINAATLAL DAGIPM D+VTSCSAGYLNSTPLLDLNYVEDSAGGPDV
Sbjct: 61 QVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 120
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
TVGIL LDKVTLLQMD+KLP + E+VMQLA EGCKA+ANYIRE+
Sbjct: 121 TVGILLKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREI 166
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 119/220 (54%), Positives = 175/220 (79%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E +SPEGLR+DGR+ +E+R++ ++G +++ADGSA EMGNTK +A VYGP EVQNK++
Sbjct: 4 LEVLSPEGLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+ L+ ++ MA FSTG+R +KP+GDR++TE+S+++R+T EA IL +L PRSQIDI+
Sbjct: 64 ALHDRVLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGG ACINA TLAL +AGIP++D V++C+ ++N TPL+D+NY+E+S GGP
Sbjct: 124 VQVLQADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQ 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+T+ ILP DK+ L QMD++L + + V+ LA++GCK +
Sbjct: 184 LTLAILPKSDKIVLFQMDSRLHMDNMDKVLALAMKGCKDI 223
>gi|356504159|ref|XP_003520866.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Glycine max]
Length = 207
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/221 (62%), Positives = 164/221 (74%), Gaps = 37/221 (16%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLRLDGR P EM+Q+RAEIG V+KADGS++FEMGNT+V AAVYGPREVQN+SQ
Sbjct: 1 MEYVSPEGLRLDGRXPMEMQQIRAEIGAVSKADGSSIFEMGNTEVTAAVYGPREVQNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q+S ALVRCEYS+ANFSTGDRMRK KGDRRSTEISLVI QTMEACILTHL+P S +F
Sbjct: 61 QISSHALVRCEYSLANFSTGDRMRKSKGDRRSTEISLVIXQTMEACILTHLLPHS--PVF 118
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++ ++++T + + P YVEDSAGG D
Sbjct: 119 KKL-------------------------SKELITC-----IQTCP-----YVEDSAGGAD 143
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
VT+GILP LDKVTLLQMD+KLP + E+VMQLAIEGCKA+A
Sbjct: 144 VTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIA 184
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/226 (63%), Positives = 182/226 (80%), Gaps = 1/226 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSPE LRLDGRRP E+RQLRAE+G ++ ADGSA+FEMGNT+V+AAV+GP+ V+ +SQ+
Sbjct: 1 EYVSPERLRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQE 60
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+A+V+CEY+MA+FSTG+R R+ K DRR+TEI + IR TME ILT L+PRSQIDI+V
Sbjct: 61 DERRAIVKCEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYV 120
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
QVLQADGGTR ACINAA +A A IPMRD+V SC+AGYL ST LLDLNY+EDS GGPDV
Sbjct: 121 QVLQADGGTRCACINAACMAAAAAAIPMRDLVASCAAGYLESTALLDLNYMEDSGGGPDV 180
Query: 182 TVGILPTL-DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V I D+V LLQ D +L TFE+V++L + GC+AVA ++R+
Sbjct: 181 AVAIHANHEDRVVLLQQDNRLSIETFEEVLELGVAGCRAVAAFMRQ 226
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 172/224 (76%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+EFVSPEGLR+DGRRP E+R+++A +G +ADGSA E GNTK++A VYGP EV K++
Sbjct: 6 LEFVSPEGLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNK 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A++ CEY +A+F+T +R + + D+R+ +++ +R E ++T L PRSQIDIF
Sbjct: 66 PLHDRAIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIF 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+QVLQ+DGG R+ CINAATLAL DAGI M+D V +CS G ++ TPLLD+NY+EDSAGGPD
Sbjct: 126 LQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
+TV +L K L++MD++L + F+DV++LAI+GC+A+ + +
Sbjct: 186 LTVAVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSIL 229
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G RLDGR+ E+R+++A +G A+ADGSA E GNTK +A VYGP EV+ ++S
Sbjct: 4 LELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+A++ C+YSMA FST +R R+P GDR+STE+SL ++QT EA +LT+L PRSQIDI
Sbjct: 64 KTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQ+DGG SAC+NAATLA+ DAGIPMRD V +C+AG+++ TPL DL + E+S GG
Sbjct: 124 YVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGT 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLLIAVDIV 238
+ + +LP + LLQMDA+L + E +M+ A+ CK V+ + E VR+ L + +
Sbjct: 184 SLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQHLQVVSALT 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 175/240 (72%), Gaps = 1/240 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E ++++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSRAR 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI+
Sbjct: 64 ALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQ 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIVG 239
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++G
Sbjct: 184 LALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLLG 243
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 170/228 (74%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
ME +S +G R+DGR+ E+R++RA +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 MELLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ ++ C+YSMA FSTG+R R+P GDR+S+E++L ++QT EA ILT L PRSQIDI
Sbjct: 64 KMLHDRCVINCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQ+LQADGG C+NAATLA+ DAGIPMRD V +CSAG++ TPL DL+YVE++ GGP
Sbjct: 124 YVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCACSAGFIEDTPLADLSYVEEATGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP D++ LL+M+++L + E VM+ + CK V + +V
Sbjct: 184 QLALALLPKSDQIALLEMNSRLHEDHLERVMEAVSKACKDVYTVLDQV 231
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 172/228 (75%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G RLDGR+ TE+R+++A +G A+ADGSA E GNTK +A VYGP EV+ ++S
Sbjct: 4 VELLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+A++ C+YSMA FST +R R+P GDR+STE+SL ++QT EA +LT+L PRSQIDI
Sbjct: 64 KTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQ+DGG SAC+NAATLA+ DAGIPMRD V +C+AG+++ TPL DL + E+S GG
Sbjct: 124 YVKILQSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGT 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP + LLQMDA+L + E +M+ A+ CK V+ + +V
Sbjct: 184 SLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQV 231
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 171/228 (75%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ST L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP ++ LL+MDA+L + E V++ A + + V + V
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHV 231
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 168/221 (76%), Gaps = 1/221 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 30 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 89
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 90 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 149
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 150 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 209
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + +LP ++ LL+MD++L + E V++ A + + V
Sbjct: 210 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV 250
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MD++L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 168/221 (76%), Gaps = 1/221 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + +LP ++ LL+MD++L + E V++ A + + V
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV 224
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 171/228 (75%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGR+ E+R++RA +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+++V C+YSMA FSTG+R R+P GDR+S+E++L ++QT EA ILT L PRSQIDI
Sbjct: 64 KMLHDRSVVNCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQ+LQADGG C+NAATLA+ DAGIPMRD V + SAG++ TPL DL+YVE++AGGP
Sbjct: 124 YVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCASSAGFIEDTPLADLSYVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP D++ LL+M+++L + E VM A + CK V + +V
Sbjct: 184 QLALALLPKSDQIALLEMNSRLHEDHLERVMDAASKACKDVYAVLDQV 231
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALSDLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MD++L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ST L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQLALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQHVHEASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVHEASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 139/225 (61%), Positives = 179/225 (79%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFVSPEGLRLDGRRP E+R++ ++ ++ ADGSA+FEMGNTKV+AAV+GP V +S+
Sbjct: 1 MEFVSPEGLRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSE 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ ALV CEYSMA FSTG+R R+ KGDRRSTE+S+VIR T+E ++T L+PRSQID++
Sbjct: 61 LREEGALVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTR A INAA LAL AG+P+RD+V C+AGYL+ T LLDLNY EDS GGPD
Sbjct: 121 VQVLQADGGTRCAAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNYTEDSGGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+ V + P LD + L+QMD +LP +TF+ VM+LA EGC+ ++ +R
Sbjct: 181 LCVALAPRLDSLYLVQMDNRLPVDTFQAVMELAREGCRTISGVMR 225
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 173/233 (74%), Gaps = 2/233 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV-QNKS 59
+E +S +G R+DGRR +E+R++ A +G +ADGSA E GNTK +A VYGP EV + +
Sbjct: 4 LEIISDQGYRIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRG 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ D+A+V C++SMA FSTG+R +PKGDRRS E+S+ +RQT EA I+T L PRSQIDI
Sbjct: 64 KIQHDRAVVNCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQ+LQADGG AC+NAATLA+ DAGIPM+D V +C+AG++ +PLLD++YVE+SAG P
Sbjct: 124 YVQILQADGGNYCACVNAATLAVIDAGIPMKDYVCACTAGFIQDSPLLDISYVEESAGAP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV-ANYIREVRKFL 231
+TV ++P +++ LL+M+++L + E V+ LA +GCK V A R VR +
Sbjct: 184 FLTVAMMPKSEQIVLLEMNSRLHADNMEKVLDLATQGCKDVFAVLDRHVRDHV 236
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG++++T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 8 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 67
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 68 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 127
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 128 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 187
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 188 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 247
Query: 239 G 239
G
Sbjct: 248 G 248
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEPVLEAAARAARDVHTLLDRVVRQHVREASVLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAAQDVHILLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAARAARDVHTLLDRVVRQHVREASLLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 166/227 (73%), Gaps = 4/227 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E + +
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGRR- 62
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI+
Sbjct: 63 ---DRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ST L DL++VE++AGGP
Sbjct: 120 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQ 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP ++ LL+MDA+L + E V++ A + + V + V
Sbjct: 180 LALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHV 226
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 179/241 (74%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YSMA FSTG+R R+P GDR++ E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGG +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + + V+++A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQLALLEMDARLHEDHLQQVLEVASQAARDVHALLDRVVRQHVREAALLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+ GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRAHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEWVLEAAAQAARDVHTLLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YSMA FSTG+R R+P GDR++ E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGG +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + + V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQLALLEMDARLHEDHLQQVLEAASQAARDVHALLDRVVRQHVREAALLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 176/243 (72%), Gaps = 4/243 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ---N 57
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E +
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIRGS 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+++ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQI
Sbjct: 64 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 123
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
DI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AG
Sbjct: 124 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 183
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVD 236
GP + + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A
Sbjct: 184 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASI 243
Query: 237 IVG 239
++G
Sbjct: 244 LLG 246
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 167/228 (73%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G RLDGR+ TE+R+++A + A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+A++ C+YSMA FST +R R+P GDR+S+E+SL ++QT EA +LT L PRSQIDI
Sbjct: 64 KSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQADGG SAC+NAATLAL DAGIPMRD V +CSAG++ TPL DL + E+S GG
Sbjct: 124 YVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGGGT 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP + LLQMDA+L + + +M+ A+ CK + + V
Sbjct: 184 ALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSV 231
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 176/243 (72%), Gaps = 4/243 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ---N 57
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E +
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIRGS 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+++ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQI
Sbjct: 64 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 123
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
DI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AG
Sbjct: 124 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 183
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVD 236
GP + + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A
Sbjct: 184 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASI 243
Query: 237 IVG 239
++G
Sbjct: 244 LLG 246
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 176/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FST +R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE+++G P
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALTDLSHVEEASGSP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARGVHTLLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 176/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ LV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRPLVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 175/241 (72%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQ EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGG +AC+N ATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQHVQEASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 176/252 (69%), Gaps = 13/252 (5%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ---- 56
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASLVYL 63
Query: 57 --------NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIL 108
++S+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA IL
Sbjct: 64 SFLFQIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAIL 123
Query: 109 THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD 168
T L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D
Sbjct: 124 TQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALAD 183
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REV 227
L++VE++AGGP + + +LP ++ LL+MDA+L + E V++ A + + V + R V
Sbjct: 184 LSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLECVLEAAAQAARDVHTLLDRVV 243
Query: 228 RKFLLIAVDIVG 239
R+ + A ++G
Sbjct: 244 RQHVHEASILLG 255
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 171/241 (70%), Gaps = 9/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN-KS 59
+E +S +G R DGRRP E+R++R +G +ADGSA E GNTKV+A VYGP E+ +S
Sbjct: 4 IELLSDQGFRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ L+ C+YSMA FSTG+R +PKGDRRS E+S+ +R+T +A ILTHL PRSQIDI
Sbjct: 64 KALHDKVLLNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQ+DGG AC+NAATLA+ DAGIPMRD V +C++ L TP++D++Y+E+S G P
Sbjct: 124 YVQVLQSDGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDISYLEESVGSP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC--------KAVANYIREVRKFL 231
++ V +LP +++ L Q +++L + E V+ + I+GC ++V ++ EV +
Sbjct: 184 EMVVALLPKSEQIVLFQQNSRLHVDNLEKVLDMGIKGCTDVYGILDQSVREHVTEVSNLM 243
Query: 232 L 232
+
Sbjct: 244 M 244
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 174/241 (72%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G RLDGR+ TE+R+L+A +G +ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRLDGRKATELRKLQARMGVFTQADGSAYLEQGNTKALAVVYGPHEMRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+A++ C+YSMA FST +R R+P GDR+STE+SL ++QT EA ++T L PRSQIDI
Sbjct: 64 RTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQ+DGG S C+NAATLA+ DAGIPMRD V +C+ G+++ TPL DL Y E+S G
Sbjct: 124 YVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVS 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLLIAVDIV 238
+ + +LP ++ LLQMDA+L + E +++ A+ CK V+ + E VR+ L A +
Sbjct: 184 SLALALLPRGGQIALLQMDARLHQDHLETLIEAAMTACKGVSKVLDEVVRQHLQEASVLT 243
Query: 239 G 239
G
Sbjct: 244 G 244
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
++ +S +G R+DGRR E+R+++ ++G ++ADGSA E GNTKV+AAVYGP E++ ++S
Sbjct: 4 LDLLSDQGFRIDGRRSHELRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ LV C+YSMA FST +R R+P+GDR+S E+++ ++QT A ILT L PRSQIDI
Sbjct: 64 KLLQDKVLVNCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTSLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
FV+VLQ+DGG A +NAATLA+ DAGIPM+D V +CSA YL +P++D+NY+E+S+G P
Sbjct: 124 FVEVLQSDGGNYCASVNAATLAVIDAGIPMKDYVCACSASYLGDSPIVDINYLEESSGSP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFL 231
++TV +LP +++ L+M+ +L + V+ +A++GCK V + R VR+ +
Sbjct: 184 EITVAVLPKSEQIVFLEMNGRLHEDNLSKVVDMAVKGCKDVYGVLDRTVREHV 236
>gi|357461605|ref|XP_003601084.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355490132|gb|AES71335.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 276
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 173/276 (62%), Gaps = 71/276 (25%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFE--------MGNTKV--IAAVY 50
ME+VSPEGLRLDGRRP EMRQ+RAEIG V+KA+G + + GN +A +
Sbjct: 1 MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGDRMRKPKGDSGQNFGNQSAAKLACMM 60
Query: 51 GPREVQNKSQQMSDQALVR---CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACI 107
G + +S+++LV +Y + G+RRSTEISLVIRQTME I
Sbjct: 61 G---YGGLAAYLSEKSLVEQLGWKYQLI------------GNRRSTEISLVIRQTMEERI 105
Query: 108 LTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL 167
LTHLMPRSQIDI+VQVLQADGGTRSACINAATLAL DAGIP+RD+VTSCSAGYLNST LL
Sbjct: 106 LTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPVRDLVTSCSAGYLNSTALL 165
Query: 168 ---------------------------DLNYVEDSAGGPDVTVGILPTLDKVTLLQ---- 196
DLNYVEDSAG PDVTVGI P LDKVTLLQ
Sbjct: 166 GIYLASLKILIGYLTRALLKVSESIWTDLNYVEDSAGVPDVTVGIFPKLDKVTLLQRPWD 225
Query: 197 ------------MDAKLPTNTFEDVMQLAIEGCKAV 220
MD+KLP + E+VMQLA EGCKA+
Sbjct: 226 PWGPISLSILHLMDSKLPIDILENVMQLATEGCKAI 261
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 183/243 (75%), Gaps = 4/243 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VSPEGLRLDGRRP E+R++ ++ ++ ADGSA+FEMGNTKV+AAV+GP V ++
Sbjct: 1 MEYVSPEGLRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRAD 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D A+V CEYSMA FSTG+R R+ KGDRRSTE+S+VIR T+E IL LMPRSQID++
Sbjct: 61 LREDAAIVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVY 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQADGGTR A INAA LAL AG+P+RD+V SC+AGYL+ TPLLDLN+ EDS GGPD
Sbjct: 121 VQVLQADGGTRCAAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNFTEDSGGGPD 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR----EVRKFLLIAVD 236
+ V + P + L+QMD +LP +TF+ V+ LA +GC+ ++ +R E K L +A
Sbjct: 181 LAVALAPREGLLVLVQMDNRLPVDTFQAVLDLARDGCRTISGVMRAALLEHTKRLAVARG 240
Query: 237 IVG 239
+ G
Sbjct: 241 MAG 243
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 168/228 (73%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGR+ TE+R+++A +G A+ADGSA E GNTKV+A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKVLAVVYGPHEMRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ D+A++ C+YSMA FST +R R+P GDR+STE+SL ++QT EA ++T L PRSQIDI
Sbjct: 64 RARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQ+DGG S C+NAATLA+ DAGIPMRD V +C+ G+++ TPL DL Y E+ G
Sbjct: 124 YVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEEGGGVS 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP ++ L+QMDA+L + + +M+ A+ CK V+ + EV
Sbjct: 184 SLGLALLPRSSQIALVQMDARLHQDNLDALMEAAMTACKGVSKVLDEV 231
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 170/233 (72%), Gaps = 2/233 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN-KS 59
+E +S EG R+DGRR E+R++ A +G A+ADGSA E GNTK +A VYGP E++ +S
Sbjct: 4 LELLSDEGYRVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C++SMA FSTG+R R+P GDR++TE+S ++QT E ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQ+LQADGG +AC+NAATLA+ DAGIP+RD V + SAG++ TPL DL+YVE++AGGP
Sbjct: 124 YVQILQADGGNYAACVNAATLAVLDAGIPLRDFVCASSAGFVEDTPLADLSYVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFL 231
V + +LP ++TLL +DA++ + E V++ A + V + R VR+ +
Sbjct: 184 QVALALLPGSGQITLLGLDARVHEDHLERVLEAATAAARDVHTVLDRVVRRHV 236
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 174/238 (73%), Gaps = 2/238 (0%)
Query: 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQQM 62
+S +G R+DGRR E+R+++A +G A+ADGS E GNTK +A VYGP E++ ++++ +
Sbjct: 105 LSDQGYRVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARAL 164
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+ALV C+YS A FSTG+R R+ GDR+S E+ L +RQT EA ILT L PRSQIDI+VQ
Sbjct: 165 PDRALVNCQYSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 224
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP +
Sbjct: 225 VLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLA 284
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIVG 239
+ +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++G
Sbjct: 285 LALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILLG 342
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 167/228 (73%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN-KS 59
+E +S +G RLDGR+ TE+R+++A +G A+ADGSA E GNTK +A VYGP E++ +S
Sbjct: 4 LELLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGARS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+A++ C+YSMA FST +R R+P GDR+STE+SL ++QT EA +LT L PRSQIDI
Sbjct: 64 RALHDRAIINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQ+DGG S C+NAATLA+ DAGIPMRD V +C+ G+++ T L DL Y E+S G
Sbjct: 124 YVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETSLADLCYAEESGGVS 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + +LP ++ L+QMDA+L + + +++ A+ CK V+ + +V
Sbjct: 184 SLALALLPRGGQIALVQMDARLHQDHLDTLIEAAMTACKGVSKVLDQV 231
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 165/227 (72%), Gaps = 1/227 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VS EGLRLDGRRP E RQ+R +G + ADGSA F GNT+V+ AV+GPRE N+ +
Sbjct: 1 MEYVSLEGLRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGE 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ ++A+++CE+S A FSTG+R + KGDRRS E++LVIRQ +EA +L HL PRS+I++
Sbjct: 61 RDDERAIIKCEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVM 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+QVLQADGG R+A INAA LA+ +AGIPM+D + +CSAGYL+ TPLLDLNYVE+ GG
Sbjct: 121 IQVLQADGGVRAAAINAAVLAIANAGIPMKDTMAACSAGYLDGTPLLDLNYVEEGGGGVR 180
Query: 181 VTVGILPTL-DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V V + DKV ++Q D K FE V LA+EGC V +RE
Sbjct: 181 VHVATHASRGDKVVVVQTDNKASVEVFEPVHALAVEGCAVVQKVMRE 227
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQ 60
E +S +GLR+DGR+P E+R++R +G ++ADGSA E GNTKV+AAVYGP E++ +KS+
Sbjct: 5 ELLSDQGLRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSK 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A V C+YS A FS G+R R+P+GDR+STE+S + +T A I T L PRSQIDIF
Sbjct: 65 ALHDKAFVNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQADGG +AC+NAA +AL DAG+P++D V SC+A + PL+D+N+VE S G P+
Sbjct: 125 VEVLQADGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKDVPLVDVNHVERSGGSPE 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVD 236
+ V ILP ++ + + + + V+ AI+GCK + + E+ K L +D
Sbjct: 185 LVVSILPHSGEIVYMSLTQRFHIDHLSKVLDTAIKGCKDIGAILNEIMKGHLTKLD 240
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 165/221 (74%), Gaps = 1/221 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S EG RLDGR+PTE R++ +G ++ADGSA E GN KV+AAVYGP E + N+S
Sbjct: 4 LELLSDEGYRLDGRKPTEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ LV C++SMA FST +R R+P+GD++S E++L I+QT EA ILT L PRSQIDI
Sbjct: 64 RALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
FV+VLQ+DGGT S C+NAATLAL DAGI ++D V +CS G+++ PL+D++ +E+S GP
Sbjct: 124 FVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
++TV +LP ++ LL+M +++ + E ++ A++GC V
Sbjct: 184 ELTVAVLPKSQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDV 224
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 163/226 (72%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ VSPEGLR DGR+ E+R++ A+ G ++ADGSA E GNTKVIA+VYGP EV N+S+
Sbjct: 4 LDLVSPEGLRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D L+ C++SMA FS +R +PKGDR+STEIS+++ +T I+T L PRSQIDI+
Sbjct: 64 TLHDSTLINCQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAIMTELYPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQV+Q+DGG +ACIN ATLAL DAG+PM+D V +C++ Y+ L D+N++E+S+G
Sbjct: 124 VQVIQSDGGVIAACINVATLALIDAGVPMKDFVCACTSSYVQEKNLTDINHLEESSGSCQ 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+T+ +LP KV Q+ ++L + E+++++ +GC + N +++
Sbjct: 184 LTLAMLPRTAKVVAFQVSSRLHLDNLEELLKITKQGCLDIYNVLQQ 229
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 163/218 (74%), Gaps = 1/218 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S EG RLDGR+P E R++ +G ++ADGSA E GN KV+AAVYGP E + N+S
Sbjct: 4 LELLSDEGYRLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ LV C++SMA FST +R R+P+GD++S E++L I+QT EA ILT L PRSQIDI
Sbjct: 64 RALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
FV+VLQ+DGGT S C+NAATLAL DAGI ++D V +CS G+++ PL+D++ +E+S GP
Sbjct: 124 FVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
++TV +LP ++ LL+M +++ + E ++ A++GC
Sbjct: 184 ELTVAVLPKSQQIVLLEMSSRVHVDNLEKMLDAAMKGC 221
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 170/233 (72%), Gaps = 3/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ ++SPEGLR+DGRR E+R++ ++G +ADGSA +E GNTK+IAAVYGPRE+ Q
Sbjct: 4 LSYISPEGLRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQ 63
Query: 61 QMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ D+A+V+CE++ ++FST +R +K KGDR +TEIS +++Q E+ I THL PRSQI+
Sbjct: 64 SIFDRAIVKCEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQIN 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I++QVLQ+DGG ++A INA+TLAL DAGI M+D V + S ++ +LDLN++E+ +GG
Sbjct: 124 IYIQVLQSDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCIDGVAVLDLNHIEERSGG 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR-EVRKF 230
PD + I P + V L MD+K+P + FE V++L +GCK + + + +V+K+
Sbjct: 184 PDCLLSIQPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDQVKKY 236
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/226 (54%), Positives = 168/226 (74%), Gaps = 1/226 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEFVSPEGLRLDGRRP E+R LR ++G + +ADGSA+FEMGNTKVIA YGP+ N+SQ
Sbjct: 1 MEFVSPEGLRLDGRRPKELRALRCQLGPLPQADGSALFEMGNTKVIATAYGPKVADNRSQ 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDR-RSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ ++A+V+C+Y+ A FSTG+R ++ ++TE++ IR +E IL L PR+QI +
Sbjct: 61 ALHNRAIVKCDYAEAAFSTGNRRQRRGRGDRKTTELASTIRSALEHTILLDLFPRAQIGV 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVLQADGG ACINAA LAL +AGIP+RD++ + SAGYL STPLLDLN++E + GP
Sbjct: 121 SVQVLQADGGVLGACINAAMLALANAGIPLRDMIAATSAGYLESTPLLDLNFLESTGAGP 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+VT+ + LDKV +L D+ + FE V +LA +GCKAVA+++R
Sbjct: 181 EVTLALHTNLDKVVILTEDSTIAAEPFEAVTELAQQGCKAVAHFMR 226
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 160/223 (71%), Gaps = 1/223 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR+DGRRP E+R+L ++G ADGSA E+GNTK +AAVYGP+E + +S Q+ D+A+
Sbjct: 23 GLRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAV 82
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ EY++A+FS+G+R K K D+R EI+ +I++T E ++T PRS+IDI+VQ+LQ D
Sbjct: 83 INVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLD 142
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG A INA LA+ DAGIPM D V +CSAG+ N + LLDLNY+E+SA P +T +LP
Sbjct: 143 GGALHAAINATCLAMIDAGIPMSDYVIACSAGFSNGSALLDLNYIEESAELPVLTAALLP 202
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRK 229
K+T+L M+++L N F+DV+ LA EGC +A + E VRK
Sbjct: 203 KSGKLTMLSMESRLHLNHFQDVLNLATEGCNTLAESLNETVRK 245
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 162/226 (71%), Gaps = 1/226 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ ++SPEGLR+DGRR E+R+L +G + +ADGS+ +E GNTK+ A+YGP E + +
Sbjct: 4 LSYISPEGLRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQ-K 62
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A ++CE++M++FST +R K + D+ + E S +I+Q E+ +LTHL PRSQIDI+
Sbjct: 63 SLFDRASIKCEFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIY 122
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQ+DGG +SA INA TLA+ DAGIPMRD V +CSA ++ + L+DLN++E+ +GG D
Sbjct: 123 VQVLQSDGGLKSAAINAVTLAMIDAGIPMRDYVCACSATFIEGSALMDLNHMEERSGGAD 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ + I P L V + M++K+P FE V+ +A+ GCK + ++E
Sbjct: 183 LLLSIHPQLGGVISINMESKVPQEMFESVLDMALAGCKKIYYLLQE 228
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 161/218 (73%), Gaps = 1/218 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S EG RLDGR+P E R++ +G +ADGSA E GN KV+AAVYGP E + ++S
Sbjct: 4 LELLSDEGYRLDGRKPFEQRKIACRLGVFTQADGSAYIEQGNAKVLAAVYGPHEPRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ D+ LV C++SMA FST +R R+P+GD++S E++L I+Q EA ILT L PRSQIDI
Sbjct: 64 RSFHDRVLVNCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
FV+VLQ+DGGT S CINAATLAL DAGI ++D V +CS G+++ PL+D++++E+S GP
Sbjct: 124 FVEVLQSDGGTLSVCINAATLALIDAGIALKDYVCACSVGFVDGVPLVDISHLEESLRGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
++TV +LP ++ LL+M +++ + + ++ A++GC
Sbjct: 184 ELTVAVLPKSQQMVLLEMTSRVHVDNLQKMLDAAVKGC 221
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/283 (43%), Positives = 174/283 (61%), Gaps = 44/283 (15%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ---- 56
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAP 63
Query: 57 ---------------------------------------NKSQQMSDQALVRCEYSMANF 77
++S+ + D+ALV C+YS A F
Sbjct: 64 GAGGGLGRRRPAHASVYAAHIPGRFNRSKSQSPRTAIRGSRSRALPDRALVNCQYSSATF 123
Query: 78 STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINA 137
STG+R R+P GDR+S E+ L +RQT EA ILT L P SQIDI+VQVLQADGGT +AC+NA
Sbjct: 124 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPCSQIDIYVQVLQADGGTYAACVNA 183
Query: 138 ATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM 197
ATLA+ DAGIP+RD V +CSAG+++ T L DL++VE++AGGP + + +LP ++ LL+M
Sbjct: 184 ATLAVLDAGIPVRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEM 243
Query: 198 DAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIVG 239
DA+L + E V++ A + V + R VR+ + A ++G
Sbjct: 244 DARLHEDHLERVLEAAARAARDVHTVLDRVVRQHVREASILLG 286
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME +SPEGLR+DGRRP E+R+ +G +++ADGSA E GNTK +A++ GP + +K++
Sbjct: 1 MEIISPEGLRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAK 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + +YSMA FST +R +PKGD+RS +IS ++R+ ++ ILT L P+SQIDI
Sbjct: 61 IKHDRVHINFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIH 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED-SAGGP 179
VQ+LQADGG SACINAATLAL DAG+PM+D + SC+A ++S ++D+N E+ P
Sbjct: 121 VQILQADGGNYSACINAATLALMDAGVPMKDFICSCTASLVDSKTIIDVNNSEELHFSNP 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK--------AVANYIRE 226
+T+ ILPT +++ L QM ++L + ED+++ I+GCK V N++RE
Sbjct: 181 LLTLAILPTSEEIILCQMKSRLHADHLEDILKAGIKGCKDIYEIMHREVLNHVRE 235
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 166/233 (71%), Gaps = 2/233 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S + LRLDGRR +E+RQ+R ++G ++ DGSA EMGNTKV+AAVYGP +V+ +++
Sbjct: 3 KLISDQNLRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKP 62
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D A++ C+YS A FST +R ++P+GD++S E S+ + Q + A I T L P+SQIDIFV
Sbjct: 63 LLDAAVINCQYSSAVFSTEERKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFV 122
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQ+DGG+ SA +N +TLAL DAGIP+++ VTSC+A N PL+D+ Y+E+S GGP
Sbjct: 123 EVLQSDGGSFSAAVNVSTLALIDAGIPLKEYVTSCTASLANENIPLVDVTYLEESCGGPT 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLL 232
+T+ LP K+ L++M + + E V+ A+EGCK + + E V++ +L
Sbjct: 183 LTIATLPLAKKIALMEMSQRFHLDHLEKVLNTAMEGCKNIQVILNEAVKRHIL 235
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 159/221 (71%), Gaps = 1/221 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S EG RLDGR+P+E R++ +G +ADGSA E GN KV+AAVYGP E + ++S
Sbjct: 42 LEILSDEGYRLDGRKPSEQRKIACRLGVFGQADGSAYIEQGNAKVLAAVYGPHEPRGSRS 101
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ D+ +V C++SMA FST +R R+P+GD++S E++L I+Q EA ILT L PRSQIDI
Sbjct: 102 RSFHDRVIVNCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDI 161
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
FV+ LQ+DGGT S CINAATLAL DAGI ++D V +CS G++ PL+D++ +E+S GP
Sbjct: 162 FVETLQSDGGTLSVCINAATLALIDAGIALKDYVCACSVGFVEGVPLVDISNLEESMRGP 221
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
++TV +LP ++ LL+M +++ + + ++ ++GC V
Sbjct: 222 ELTVAVLPKSQEMVLLEMTSRVHLDHLQKMLDAGVKGCTDV 262
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G KV+AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E +L H+ PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+++LQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 154/220 (70%), Gaps = 1/220 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN-KSQ 60
+++S EG R+DGRR EMR+L +G A+ADGSA + GNT V+AAVYGP EV+ + +
Sbjct: 5 QYLSEEGFRVDGRRAQEMRKLDCSLGVFAQADGSAYVKEGNTVVLAAVYGPHEVRGGRVK 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A+V C++S A FST +R R+P+GD +S E++L ++QT E ILT L PR QIDIF
Sbjct: 65 ALHDRAVVNCQFSAATFSTAERKRRPRGDTKSVEMTLHLQQTFETAILTKLYPRCQIDIF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQADG S INAAT+AL DAGI +RD V +CSAG N LLDLN +E+S G
Sbjct: 125 VEVLQADGSILSVAINAATMALVDAGIGLRDYVCACSAGVFNDAALLDLNNLEESQKGTG 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+TV ILP +++ L+ M +K+ ++ ++ AIEGCK +
Sbjct: 185 LTVAILPKTERIVLVDMSSKIHSDHVSKTIEAAIEGCKDI 224
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 164/234 (70%), Gaps = 5/234 (2%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E ++ +GLRLDGRRP E+R++R ++G + DGSA E GNTKV+AAVYGP + +KS+
Sbjct: 1 ELLTSQGLRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKM 59
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ +V C+YSMA FSTG+R +P GDR+STE+SL +RQ + A I T L PRSQID++V
Sbjct: 60 SNEGVVVNCQYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYV 119
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL---NSTPLLDLNYVEDSAGG 178
+VLQADG C+NAATLAL DAGIP+R +CSA ++ PLLD+ +VE++AGG
Sbjct: 120 EVLQADGSCYCVCVNAATLALIDAGIPLRAYACACSASMSWRDDAEPLLDVGHVEEAAGG 179
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFL 231
+TV LP+ ++ LL+M +L + F+ V+ A++GC+ + + + VR+ L
Sbjct: 180 VCLTVASLPSTGRIALLEMSHRLHMDYFDIVLSRAMQGCRDIEVVLDKAVREHL 233
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G RLDGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ L PR+ ID+F
Sbjct: 68 QKPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPIKNDITLLQMDGYLTKEEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAEEV 245
>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/226 (53%), Positives = 168/226 (74%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+VS EGLRLDGRRP E R++R E+ + +DGSAVFE+GNTKV+AAV+GP E + S+
Sbjct: 1 MEYVSLEGLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSE 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ LV+CE SMA FSTG+R R+ KGDRR+ E+S +R+ +E C+ L+ RSQ+D+
Sbjct: 61 RLEDRLLVKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLDVS 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+QVLQADGG R+A +NAA LA+ DAGIPM+D + CSAGYL+ TPLLDLNY+E+ GGP+
Sbjct: 121 IQVLQADGGVRAAAVNAAVLAIVDAGIPMQDTMACCSAGYLDDTPLLDLNYMEEGGGGPE 180
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V V +P +D+V + + K + FE +LA++GC+ + +RE
Sbjct: 181 VHVAYMPQMDRVVAIVTENKASVDVFERAHELALDGCRVASKLMRE 226
>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
Length = 291
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 167/274 (60%), Gaps = 47/274 (17%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ---- 56
+E +S +G R+DGR+ TE+R+++A +G A+ADGSA E GNTK +A VYGP EV
Sbjct: 4 LELLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVC 63
Query: 57 ------------NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTME 104
++S+ D+A++ C+YSMA FST +R R+P GDR+STE+SL ++QT E
Sbjct: 64 VCVCVCVCQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFE 123
Query: 105 ACILTHLMPRSQIDIFV-------------------------------QVLQADGGTRSA 133
A ++T L PRSQIDI+V Q+LQ+DGG S
Sbjct: 124 AAVMTQLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSV 183
Query: 134 CINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVT 193
C+NAATLA+ DAGIPMRD V +C+ G+++ TPL DL Y E+S G + + +LP ++
Sbjct: 184 CVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLPRGGQIA 243
Query: 194 LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
L+QMDA+L + + +M+ A+ CK V+ + EV
Sbjct: 244 LVQMDARLHQDNLDALMEAAMTACKGVSKVLDEV 277
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 160/223 (71%), Gaps = 4/223 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S +GLRLDGRRP E+R++R ++G + DGSA E GNTKV+AAVYGP +V+ +
Sbjct: 5 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKS 64
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ +V C+YSMA FSTG+R +P+GDR+S E+S+ +RQ + A I T + PRSQIDI+V
Sbjct: 65 SAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYV 124
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA--GYLNST--PLLDLNYVEDSAG 177
+VLQADGG A +NA+TLAL DAGIP++ V SCSA +L+ PLLD+ +VE++AG
Sbjct: 125 EVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEAAG 184
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
G +TV LP+ + LL++ +L ++ F+ V+ A++GC+ +
Sbjct: 185 GVTLTVASLPSTGSIALLELSHRLHSDYFDTVLSRAMQGCRDI 227
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 161/240 (67%), Gaps = 2/240 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R+++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 7 LKLIDENGYRVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHL 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ L PR+ IDIF
Sbjct: 67 QKPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIF 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +LDLN ED+ G D
Sbjct: 126 IEVLQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLLIAVDIVG 239
V V I+P + +TLLQMD L F + ++LAI+G KAV RE +R+ L V+ VG
Sbjct: 186 VPVAIMPIKNDITLLQMDGYLTKEEFLEAVKLAIKGAKAVYQKQREALREKYLKIVEEVG 245
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 165/233 (70%), Gaps = 3/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME +S +GLRLDGRR E+R ++ ++G ++ DGSA E GNTKV+AAVYGP + +K
Sbjct: 1 MELLSDQGLRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKS 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++A+V C+YSMA FSTG+R ++P+GDR+S E+++ ++Q + A I L PRSQID++
Sbjct: 61 N-HEEAIVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVY 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STPLLDLNYVEDSAGGP 179
++VLQADGG A +NAATLAL DAGI +++ V +C+A N + PL+D++++E+++GGP
Sbjct: 120 IEVLQADGGNYCASVNAATLALIDAGICLKEYVCACTASLANGNVPLMDVSHLEENSGGP 179
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFL 231
+TV LP+ K+ ++M + + V++ A++GC+ V N I R VR+ +
Sbjct: 180 TLTVASLPSSGKIAFMEMSQRFHLDHLPKVLETALKGCREVQNVIDRAVREHV 232
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G RLDGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +CSAG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGRR E+R++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ +D+F
Sbjct: 68 QRPDTAVLRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVA 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAEEVG 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 170/233 (72%), Gaps = 3/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ ++SPEGLR+DGRR E+R++ E+G +ADGSA +E GNTK+IAAVYGPRE+ +
Sbjct: 4 LSYISPEGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGK 63
Query: 61 QMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ D+A+V+CE+S ++FST +R +K KGDR +TEI+ +++Q E+ I THL PRSQI+
Sbjct: 64 GVFDRAVVKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQIN 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I++QVLQ+DGG ++A INA+TLAL DAGI M+D + +CS ++ +LDLN +E+ +GG
Sbjct: 124 IYLQVLQSDGGLKAAAINASTLALIDAGISMKDFICACSTSCIDGIAVLDLNNIEERSGG 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKF 230
PD + I P + V L MD+K+P + FE V++L +GCK + + + + V+K+
Sbjct: 184 PDCLLSIQPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDYVKKY 236
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 7 LKLIDENGRRIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ +D+F
Sbjct: 67 QRPDTAVLRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVF 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +LDLN ED+ G D
Sbjct: 126 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEAD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 186 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVA 245
Query: 239 G 239
G
Sbjct: 246 G 246
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 7 IKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E I+ L PR+ ID+F
Sbjct: 67 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVF 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPM+D+V++C+AG + +LDLN ED+ G D
Sbjct: 126 IEVLQADAGTRVAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDNYGEAD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K++ IA ++
Sbjct: 186 VPVAIMPIKNDITLLQMDGYLTREEFLEAVRLAIKGAKAVYQKQREALKEKYIKIAQEV 244
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 151/239 (63%), Gaps = 15/239 (6%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ----- 56
EF+S GLR+DGRR E+R++R G ++ DGSA +E GNTKV+A VYGPRE++
Sbjct: 20 EFISVAGLRVDGRRSEEVRRIRTRFGLFSRVDGSAYYEQGNTKVVAVVYGPRELRVGPAG 79
Query: 57 ----------NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEAC 106
N + +A+V CE++ A F+T +R + GDR+ E+SL ++Q EAC
Sbjct: 80 GAAAVGTGSGNAASNTQPRAVVNCEFTQAAFATSERKPQRSGDRKKVEMSLAVKQIFEAC 139
Query: 107 ILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL 166
+ T L PRSQIDIFVQVL ADGG A INA TLAL DAGI + D V + SAGYL T L
Sbjct: 140 VQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQQTML 199
Query: 167 LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
DLNY E+ A P V + + P K+ LLQM+ KLP FE +M++A EGC + + ++
Sbjct: 200 CDLNYAEEVARAPQVVMALNPRTQKLNLLQMECKLPLELFESLMEVATEGCNQIYDLLQ 258
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRVDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTSIDLF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKDEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR--KFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFVEAVRLAIKGAKAVYQKQREALKVKYLKIAEEVG 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR--KFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKVKYLKIAEEVG 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 160/231 (69%), Gaps = 3/231 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
M+ +S +GLR DGRR E+R++R ++G + DGSA E GNTKV+AA+YGP E++ N++
Sbjct: 1 MDLLSRQGLRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRA 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ +D A++ C+YSMA FS +R R+P+ D +S E++L ++Q M I T L P+SQIDI
Sbjct: 61 KAPNDSAVINCQYSMATFSRSERKRRPR-DNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STPLLDLNYVEDSAGG 178
FVQVLQ+DGG S C+NAATLAL DAGI M + V SC++ N TPL+D++++E++ GG
Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEETMGG 179
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TV ILP K+ +L+ ++ N E V+ A+ GC+ + + ++ K
Sbjct: 180 PSLTVAILPISGKIAMLETSQRIHINHLEPVLTEAVRGCRYIYENLNKIIK 230
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K+IAAVYGP+E+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLRNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKDKYLKIAQEV 245
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 IKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K++ IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYIKIAEEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 159/230 (69%), Gaps = 2/230 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQ 60
E +S GLR DGRR E+R++R ++G + DGSA E G TKV+AAVYGP +V+ ++S+
Sbjct: 6 ELLSKIGLRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSK 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D A+V C++SMA FSTG+R ++P+GDR+STEIS+ +RQ + A I L P +QID++
Sbjct: 66 AQHDSAVVNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVY 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDLNYVEDSAGGP 179
V+VL ADGG AC+NAATLAL DAGIP+++ V +C+A N+ PLLD+++ E+ GGP
Sbjct: 126 VEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGP 185
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+TV LP K+ L++M + + + V+ A++GCK + + + E K
Sbjct: 186 TLTVAALPMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDEAVK 235
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ +K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQEV 245
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+RQ+R E+G + ADGSA E GN K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKHELRQIRMEVGVLKNADGSAYIEWGNNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + A++R Y+MA FS +R +KP DRRS EIS VI ++ ++ + PR+ ID+F
Sbjct: 68 QRPETAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIHGALQPALILEMFPRTVIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG ++ +LD N ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIDGEIVLDPNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V ++P + +TLLQMD L F + ++LA++G KAV RE K+L I+ ++
Sbjct: 187 VPVAVMPMKNDITLLQMDGYLTKEEFLEAVRLAMKGAKAVYQKQREALKEKYLKISGEVG 246
Query: 239 G 239
G
Sbjct: 247 G 247
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 153/216 (70%), Gaps = 3/216 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E +SP+GLR DGRRP E+R++ +G + +ADGS EMGNT V+A VYGPRE+ S +
Sbjct: 5 ELISPDGLRTDGRRPLEIRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPREL---SSR 61
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
S ++RCEYSMA+F++ DR R + DR S E++ I++T E +LT L P+S++DIF+
Sbjct: 62 QSSCGIIRCEYSMASFASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFI 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
QVLQADG RSA INA T+A+ +AGIPM+D++ SCSAGY+ +T ++DLN+VE GP +
Sbjct: 122 QVLQADGSERSAAINAVTIAMVNAGIPMKDLIVSCSAGYMENTTVMDLNHVEMITRGPQL 181
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
T+ I + +++ +++K FE+++ +A +GC
Sbjct: 182 TLAIYASTERMATAHLESKASFEIFENLIAIAKKGC 217
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 160/246 (65%), Gaps = 6/246 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME +S +GLRLDGRRP E+R ++ ++G + DGSA E GNTKV+AAVYGP + + K
Sbjct: 5 MELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKT 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ +D ++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQIDI+
Sbjct: 65 EGND-LVINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGP 179
V+VLQADG + +NAATLAL DAGI + + V +C+A N+ PL D++++E+ +GGP
Sbjct: 124 VEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSNANIPLTDISHIEEVSGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI----AV 235
+T+ LPT +K+ ++M + + E V++ A+ GC+ + + + K LI A
Sbjct: 184 KLTIAALPTAEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILESAVKEHLIHIGSAA 243
Query: 236 DIVGLC 241
D +C
Sbjct: 244 DWARVC 249
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 159/246 (64%), Gaps = 6/246 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME +S +GLRLDGRRP E+R ++ ++G + DGSA E GNTKV+AAVYGP + + K
Sbjct: 5 MELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKS 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ +D ++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQIDI+
Sbjct: 65 EGND-LIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGP 179
V+VLQADG + +NAATLAL DAGI + + V +C+A S PL D++++E+ +GGP
Sbjct: 124 VEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVSGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI----AV 235
+T+ LPT +K+ ++M + + E V++ A+ GC+ + + + K LI A
Sbjct: 184 KLTIAALPTAEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILEAAVKEHLIHIGSAA 243
Query: 236 DIVGLC 241
D +C
Sbjct: 244 DWARVC 249
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 155/229 (67%), Gaps = 2/229 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E +S GLR DGRR E+R++R ++G + DGSA E G TKV+AAVYGP +V Q
Sbjct: 6 ELLSKIGLRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQ 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D A+V C++SMA FSTG+R ++P+GDR+STEIS+ +RQ + A I L P +QID++V
Sbjct: 66 -HDSAVVNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYV 124
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDLNYVEDSAGGPD 180
+VL ADGG AC+NAATLAL DAGIP+++ V +C+A N+ PLLD+++ E+ GGP
Sbjct: 125 EVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPT 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+TV LP K+ L++M + + + V+ A++GCK + + + E K
Sbjct: 185 LTVAALPMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDEAVK 233
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 155/224 (69%), Gaps = 1/224 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME +S EGLRLDGRR E+R+++ ++G ++ DGSA E GNTKV+AAVYGP + K +
Sbjct: 1 MELLSDEGLRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAK-K 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ +V C+YSMA FSTG+R R+P+GDR+S E+++ ++Q + A I T L P+SQID++
Sbjct: 60 SSHEEVIVNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVY 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VL ADGG A +NAATLAL DAGI +++ V +C+A PL+D++ +E+ +GGP
Sbjct: 120 IEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKIPLMDVSNLEEMSGGPT 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
+TV LP+ K+ ++M + + V++ A++GC+ V I
Sbjct: 180 LTVASLPSSGKIAFMEMSQRFHLDHLPKVLETALQGCREVQKII 223
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 156/231 (67%), Gaps = 4/231 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME +S +GLRLDGR+ E+R+LR +G + ADGSA EMGNTKV+AAVYGPRE + S
Sbjct: 1 MELLSDQGLRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRGGS 60
Query: 60 ---QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++A++ ++S A FST +R ++ +GD+RS E++ ++QT ACI T L PRSQ
Sbjct: 61 SGDNSNKEEAILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQ 120
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
IDIFV+VLQ DGG A +NAATLAL AGIP+RD V +CSA + TPLLD++ +E +
Sbjct: 121 IDIFVEVLQTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKETPLLDISMLESNL 180
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
GGP++ + LP ++ LL+M + + E V+ A+EG + + + + EV
Sbjct: 181 GGPELILAALPKSGEIVLLEMSQRFHMDHLEKVIDEALEGTRKIRDILDEV 231
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 150/227 (66%), Gaps = 1/227 (0%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+S +GLRLDGR+P EMR L+ + G + +ADGSA E+G K++AAVYGPRE+ + +Q
Sbjct: 8 LISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+VR Y+MA FS +R R P DRRS EIS + ++ +E I T PR+ IDIFV+
Sbjct: 68 PDRAVVRFRYNMAPFSVDERKR-PGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR A I+AA++AL DAGI MRD+V +C+AG + +LD Y ED G DV
Sbjct: 127 VLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVP 186
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ ++P K+TLLQMD + F+ ++LA +GCK V R K
Sbjct: 187 LAMMPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALK 233
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 156/234 (66%), Gaps = 2/234 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S +GLRLDGRRP E+R ++ ++G + DGSA E GNTKV+AAVYGP + + K
Sbjct: 5 FELLSEQGLRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKT 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ +D ++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQID++
Sbjct: 65 ESND-VIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY-LNSTPLLDLNYVEDSAGGP 179
V+VLQADG + +NAATLAL DAGI + +++ +C+A N+ PL D++++E+ +GGP
Sbjct: 124 VEVLQADGANYAVALNAATLALIDAGICLNELIVACTASLSKNNIPLTDISHIEEVSGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 233
+TV LPT K+ L+M + + E V++ A+ GC+ + + + V K L+
Sbjct: 184 KLTVAALPTAQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAVVKEHLL 237
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 159/246 (64%), Gaps = 6/246 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E +S +GLRLDGRRP E+R ++ ++G + DGSA E GNTKV+AAVYGP + + K
Sbjct: 5 IELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKT 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ +D ++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQIDI+
Sbjct: 65 EGND-LIINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGP 179
V+VLQADG + +NAATLAL DAGI + + V +C+A S PL D++++E+ +GGP
Sbjct: 124 VEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVSGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI----AV 235
+T+ LPT +K+ ++M + + E V++ A+ GC+ + + + K LI A
Sbjct: 184 KLTIAALPTAEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILESAVKEHLIHIGSAA 243
Query: 236 DIVGLC 241
D +C
Sbjct: 244 DWARVC 249
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 149/245 (60%), Gaps = 19/245 (7%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ----- 56
EF+S GLR+DGRR E+R++R G ++ DGS+ +E GNTKV+A VYGPRE++
Sbjct: 18 EFISVAGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAG 77
Query: 57 --------------NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQT 102
N + +A V CE++ A F+T +R + GDR+ E+SL ++Q
Sbjct: 78 SVNSGAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQI 137
Query: 103 MEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN 162
EACI T L PRSQIDIFVQVL ADGG A INA TLAL DAGI + D V + SAGYL
Sbjct: 138 FEACIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQ 197
Query: 163 STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
T L DLNY E+ A P + + + P K+ LLQM+ KL FE +M++A EGC + +
Sbjct: 198 QTMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQMECKLQLELFESLMEVATEGCNQIYD 257
Query: 223 YIREV 227
++
Sbjct: 258 LLQNA 262
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 152/233 (65%), Gaps = 2/233 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
EG R DGR P +MR+++ +G ++ ADGSA+ GNT +AAVYGPRE+ + + D+A
Sbjct: 11 EGRRADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRA 70
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y MA FST D + P RR EIS V+R+ +E I PRS+ID+FV+++QA
Sbjct: 71 VMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQA 130
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DG TR A + AA+LAL DAG+PMRD+V S G +N T +LDLN +ED+ G D+ VG +
Sbjct: 131 DGSTRVASLTAASLALADAGVPMRDLVIGVSVGLVNGTVVLDLNGLEDNYGEGDMPVGYM 190
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
P L ++TLLQ+D + F + ++LAI+G + V + RE K+ IA ++
Sbjct: 191 PNLGRITLLQLDGSWSRDKFAEALKLAIKGAEYVYSKAREALKTKYFEIAEEV 243
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 11/238 (4%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ--NK 58
E +S +GLRLDGRRP E+R ++ ++G + DGSA E GNTKV+AAVYGP + + NK
Sbjct: 5 FELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNK 64
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
S + +D ++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQID
Sbjct: 65 SSESND-VIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAG 177
++V+VLQADG + +NAATLAL DAGI + + + +C+A S PL D++ VE+ +G
Sbjct: 124 VYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQVEEISG 183
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
GP +TV LPT +K+ L+M + + E V++ A+ GC RE+R L AV
Sbjct: 184 GPKLTVAALPTSEKIAFLEMSERFHIDHLETVIETAMAGC-------REIRDILEAAV 234
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 159/235 (67%), Gaps = 8/235 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME +S EGLRLDGRR E+R+++ ++G ++ DGSA E GNTKV+AAVYGP + K
Sbjct: 1 MELLSDEGLRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKS 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ +V C+YSMA FSTG+R ++P+GDR+S E+++ ++Q + A I T L P+SQID++
Sbjct: 61 N-HEECVVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVY 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VL ADGG A +NAATLAL DAGI +++ V +C+A PL+D++ +E+ +GGP
Sbjct: 120 IEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKVPLMDVSNLEEMSGGPT 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+TV LP K+ ++M + + +V++ A++GC REV+K + AV
Sbjct: 180 LTVASLPNSGKIAFMEMSQRFHLDHLPNVLETALQGC-------REVQKIIDQAV 227
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 147/222 (66%), Gaps = 8/222 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E++SPEGLR DGRRP E+R L I + +ADGSA + GNT+VIA VYGP + Q+
Sbjct: 10 FEYLSPEGLRSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHDAQH--- 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A + C++SMA FST +R ++P GD+ E SL +++T EA ILT P S+IDIF
Sbjct: 67 ---DKAFINCQFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHSKIDIF 123
Query: 121 VQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
VQ+LQ+DG ++ INA T+AL DAGIPM+D V + S +N TP++DLNY E+ G
Sbjct: 124 VQILQSDGSNCDKAVSINAITMALIDAGIPMKDYVCATSVTLINDTPIVDLNYFEERGPG 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
P++ VG LP K+ LQ++++L + E V++ + G + V
Sbjct: 184 PELIVGTLPKSGKIVFLQVNSRLHIDNMEKVLKEGMNGNQRV 225
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 154/235 (65%), Gaps = 12/235 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E +S +GLRLDGRRP E+R+++ ++G + DGSA E GNTKV+AAVYGP + ++K
Sbjct: 6 ELLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSKH-- 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQIDI+V
Sbjct: 64 --TESIINCQYSQATFSTAERKYRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYV 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQADG + +NAATLAL DAGI + + + +C+A S PL D+++ E+ +GGP
Sbjct: 122 EVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEEVSGGPK 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+TV LPT +K+ L+M + + E V++ A+ GC RE+R L AV
Sbjct: 182 LTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGC-------REIRDILEAAV 229
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 157/221 (71%), Gaps = 1/221 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ +++PEGLR+DGRR E+R+L ++G +ADGSA +E GNTK+ AVYGPREV + +
Sbjct: 4 LSYITPEGLRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQR 63
Query: 61 QMSDQALVRCEYSMANFSTG-DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ D+A+V CEYS A FS+ DR K D++S EI+ +I+Q E+ I L PRSQIDI
Sbjct: 64 MLHDRAIVNCEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGG ++A +NAATLA+ DAG+PMRD + +CSA ++ PLLD+N +E+ +GG
Sbjct: 124 YVQVLQADGGLKAAALNAATLAVIDAGLPMRDFICACSATFIEGVPLLDMNQMEERSGGA 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
D+ + I P L V L M++K+P + FE V++LA GC +
Sbjct: 184 DLLLSIQPQLGGVISLNMESKVPQDMFESVLELANLGCMKI 224
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 153/235 (65%), Gaps = 12/235 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E +S +GLRLDGRRP E+R+++ ++G + DGSA E GNTKV+AAVYGP + + K
Sbjct: 6 ELLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQ-- 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQIDI+V
Sbjct: 64 --TESIINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYV 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQADG + +NAATLAL DAGI + + + +C+A S PL D+++ E+ +GGP
Sbjct: 122 EVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEEVSGGPK 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+TV LPT +K+ L+M + + E V++ A+ GC RE+R L AV
Sbjct: 182 LTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGC-------REIRDILEAAV 229
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 153/233 (65%), Gaps = 3/233 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ +GLR DGRRP E+R ++ ++G + ADGSA E G TK+IAAVYGPREV + +
Sbjct: 6 LIREDGLRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLAL 65
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+AL+RC Y MA FST DR + P RR E+S VIR+ +E+ + + L PR+ ID+F++
Sbjct: 66 PDRALIRCRYHMAPFSTSDR-KSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIE 124
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQADGGTR+ + AA+LAL DAGIPMRD+V +AG ++ +LD++ VED G D+
Sbjct: 125 VLQADGGTRTTGLTAASLALADAGIPMRDLVAGVAAGKVDGVLVLDIDEVEDEYGEADMP 184
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLI 233
+G +D++ LLQ++ F++ + LA G + + ++E +K+L +
Sbjct: 185 IGYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLHKKYLKV 237
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 146/222 (65%), Gaps = 2/222 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--K 58
E +S EG R DGR+P+E+R++R +G +ADGSA E GNTKV+AA+YGP E N +
Sbjct: 4 FELISDEGYRFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMR 63
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
S+ D+ + CE+S A FS+ +R ++ +GDR+ ++S I+QT EA + T L PRSQID
Sbjct: 64 SRVCLDKCFINCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I++QVL +DG AC+NAATLAL DAGI M+D V +CSA T L+D+N+VE+ AG
Sbjct: 124 IYLQVLHSDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETSLIDINHVEELAGC 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + I+P LD++ +++ ++ + ++ GCK +
Sbjct: 184 AEFSAAIMPKLDQIIYSELNGRIHQDELGQLVDAVTNGCKDI 225
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E +L L PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALLLELFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPM+D+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIEGQIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K++ IA ++
Sbjct: 187 VPVAIMPMKNDITLLQMDGYLTREEFIEAVKLAIKGAKAVYQKQREALKEKYIKIAQEV 245
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 153/221 (69%), Gaps = 2/221 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G+RLDGRR E+R ++ E+G + +ADGS EMG+ KVIAAVYGPREV + Q ++A
Sbjct: 9 DGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRA 68
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA+FS +R R+P DRRS E+S V R+ +E ILT P+S IDIFV+VLQA
Sbjct: 69 IIRYRYNMASFSVEER-RRPGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVLQA 127
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA++AL DAGIPMR +V+SC+AG ++ +LD ED+ G D+ + I
Sbjct: 128 DAGTRTAGINAASVALADAGIPMRSLVSSCAAGKVDGQIVLDPMKDEDNFGQADMPIAIT 187
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
PT ++TLLQMD L + F M+LA +GC+ + R V
Sbjct: 188 PT-GEITLLQMDGILTRDEFRQAMELAKKGCQEIYKIQRRV 227
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGR+P EMR ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A+
Sbjct: 14 GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL L PR+ ID+F++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + +LDLN ED G D+ V ++P
Sbjct: 133 AGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+L +V LLQ++ + F +++A +G + + N +E
Sbjct: 193 SLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKE 231
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ +GLR DGR+P E+R ++ ++G + ADGSA E G TKVIAAVYGPREV + +
Sbjct: 6 LIREDGLRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLAL 65
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+AL+RC Y MA FST DR + P RR E+S VIR+ +E+ + + L PR+ ID+F++
Sbjct: 66 PDRALIRCRYHMAPFSTSDR-KSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIE 124
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQADGGTR+ + AA+LAL DAGIPMRD+V + G ++ +LD++ VED G D+
Sbjct: 125 VLQADGGTRTTGLTAASLALADAGIPMRDLVAGVAVGKVDGVLVLDIDEVEDEYGEADMP 184
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFL 231
+G +D++ LLQ++ L F + + LA G + + ++E +K+L
Sbjct: 185 IGYAAGIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLHKKYL 235
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGR+P EMR ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A+
Sbjct: 18 GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 77
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL L PR+ ID+F++VLQAD
Sbjct: 78 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 136
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + +LDLN ED G D+ V ++P
Sbjct: 137 AGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMP 196
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+L +V LLQ++ + F +++A +G + + N +E
Sbjct: 197 SLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKE 235
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 151/221 (68%), Gaps = 2/221 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGRRP E+R ++ E+G + +ADGS EMG+ KVIAAVYGPREV + Q +A
Sbjct: 10 DGLRLDGRRPDELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHLQEVTRA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y+MA+FS +R R P DRRS E+S V R+ + + ILT PRS +DIFV+VLQA
Sbjct: 70 IVRYRYNMASFSVEERKR-PGPDRRSYEVSKVSREALASVILTSYFPRSVVDIFVEVLQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA++AL DAGIPM+ +++SC+AG ++ +LD ED+ G DV + +
Sbjct: 129 DAGTRTAGINAASVALADAGIPMKGLISSCAAGKVDGEIVLDPMKAEDNFGEADVPIAMT 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
P ++TLLQMD +L + F ++LA GC+ + R V
Sbjct: 189 PG-GEITLLQMDGRLSRDEFRRALELAKVGCQQIYEVQRRV 228
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 151/225 (67%), Gaps = 4/225 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
F+ GLRLDGR+ EMRQ++ +IG +++ADGS E GN K++ AVYGPRE+ + Q
Sbjct: 8 FIDENGLRLDGRQINEMRQMKIKIGVLSRADGSCYLEWGNNKILVAVYGPRELHPRRLQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+D AL+R Y+MA FS DR+R P RRS EIS V R+ E I+THL P + ID+F +
Sbjct: 68 ADSALIRYRYNMAAFSVEDRIR-PGPSRRSIEISKVSREAFEPVIMTHLYPGAVIDVFAE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR+A INAA++AL DAGIPM+ +V++C+ G ++ +LDLN ED+ G D+
Sbjct: 127 VLQADAGTRTAAINAASIALADAGIPMKSLVSACAVGKVDGQLVLDLNKAEDNYGQADLP 186
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V + T D ++TLLQMD L F+ +++ EGC+ + +E
Sbjct: 187 VAM--TQDGEITLLQMDGNLTQEEFKRALEMCKEGCRQIMEMQKE 229
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 149/234 (63%), Gaps = 8/234 (3%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS-- 59
E++S GLRLDGRR E R++RA +G +ADGSA E GNTKV+ VYGPREV +
Sbjct: 11 EYISLAGLRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLK 70
Query: 60 -----QQMSDQALVRCEYSMANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMP 113
+ +A+V CE + A+F+T DR + + DR++ E+S I+Q E+CI T+L P
Sbjct: 71 NAKGAASLVKKAIVHCECTQASFATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYP 130
Query: 114 RSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
+SQI I+ QVLQADGG +A INA +LAL DAGI + D V + +AG++ L DLN E
Sbjct: 131 QSQISIYPQVLQADGGELAASINATSLALMDAGIALNDFVVASTAGFVQQKSLCDLNAFE 190
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+A GP +TV I P V L+M+AKL FE VM +AI GC + + +++V
Sbjct: 191 QAARGPQITVAINPRSRHVNYLKMEAKLALEVFESVMGMAINGCDRIGDSLQQV 244
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 148/224 (66%), Gaps = 3/224 (1%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR P E+R +R E+G ++ ADGSA E G T+VIAAVYGPREV K + D+AL+
Sbjct: 20 VRHDGRAPDELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYGPREVHPKHMALPDRALI 79
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y MA FST +R + P RR E+S VIR+ +E + T L PR+ IDIF++V++ADG
Sbjct: 80 RCRYHMAPFSTDER-KSPAPTRREIELSKVIREALEPVVFTELYPRTTIDIFIEVIEADG 138
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR+A + AA+LAL DAG+ MRD+V + G + +LD++ +ED G D+ V + P+
Sbjct: 139 GTRTAAVTAASLALADAGVQMRDLVAGVAVGKVQGVLVLDIDQLEDEYGEADMPVAMAPS 198
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKF 230
L VTLLQ++ L F++ M LA +G +A+ RE RK+
Sbjct: 199 LGWVTLLQLNGVLSREEFKEAMALARKGIEAIYKMQREALRRKY 242
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 153/228 (67%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+F+S GLR DGRR E+R++R+ G ADGSA EMG TK+IA V GPREV + +
Sbjct: 6 DFISLAGLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDR 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D +V CEY++A FS +R ++ +R+ EI+L +++ E I+ HL PR+QIDI++
Sbjct: 66 KYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYL 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
V+Q+DGG INAA+LAL DAG+ M D+V +CSAGYL+ P++DLNYVE + GGP +
Sbjct: 126 HVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYL 185
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
V +LP DK+ L +M+++LP FE+V++ A + C+ V +R K
Sbjct: 186 PVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVK 233
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 73 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEAEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + F LA++G + N RE K
Sbjct: 192 PSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 13 DGKRIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 73 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + F LA++G + N RE K
Sbjct: 192 PSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 152/234 (64%), Gaps = 3/234 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S +GLRLDGRRP E+R ++ ++G + DGSA E GNTKV+AAVYGP + +
Sbjct: 5 FELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKT 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ +D ++ C+YS A F+T +R +P+GDR+S E + + Q + A I + L PRSQIDI+
Sbjct: 65 ETND-VIINCQYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGP 179
V+VLQADG + +NAATLAL DAGI + + + +C+A S+ PL D+++ E+ +GGP
Sbjct: 124 VEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSSIPLTDISHTEEVSGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR-EVRKFLL 232
+TV LP K+ L+M + + E V++ A+ GC+ + + + VR+ LL
Sbjct: 184 MLTVAALPNAQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVREHLL 237
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 73 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + F LA++G + N RE K
Sbjct: 192 PSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 73 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + F LA++G + N RE K
Sbjct: 192 PSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 76 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ + ++
Sbjct: 135 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMM 194
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + + F LA++G + N RE K
Sbjct: 195 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 237
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 13 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 73 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ + ++
Sbjct: 132 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + + F LA++G + N RE K
Sbjct: 192 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 234
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 142/213 (66%), Gaps = 1/213 (0%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R L+ E G + +ADGSA EMG KV+AAVYGPRE+ + M ++A++R
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYGPRELHIRRIMMPNKAVLR 78
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C+Y+MA FS DR R P DRRS EIS + + + + PRS ID+F++VL+A+GG
Sbjct: 79 CKYNMAPFSVDDRKR-PGPDRRSVEISKITSEALTPAVFLEKFPRSTIDVFIEVLEAEGG 137
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
TR A I AA++AL DAG+PMRDIV +C+AG N ++DL+ VED G D+ + ++P
Sbjct: 138 TRCAGITAASVALADAGVPMRDIVVACAAGKSNGQVVMDLSEVEDKEGEADLPIAMMPRT 197
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
++TLLQMD L FE + LA+EGCK ++
Sbjct: 198 GEITLLQMDGHLTGEEFEKALDLAVEGCKRISE 230
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 13 DGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 73 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + F L+++G + N RE K
Sbjct: 192 PSLNQVTLFQLNGNMTPEEFRQAFDLSVKGINIIYNLEREALK 234
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR P ++R +R E+G ++ ADGSA+ E G T+VIAAVYGPRE + + D+A++
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y MA FST +R + P RR E+S VIR+ +EA +++ L PR+ ID++++VLQ+DG
Sbjct: 84 RCRYHMAPFSTAER-KTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDG 142
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR+A I AA+LAL DAGI MRD+V + G ++ +LD++ +ED+ D+ V + P+
Sbjct: 143 GTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPS 202
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVD 236
LDKV LLQ++ L + F ++LA +G + + N +E +K++ ++V+
Sbjct: 203 LDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVE 252
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 151/235 (64%), Gaps = 12/235 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S +GLRLDGRRP E+R+++ ++G + DGSA E GNTKV+AAVYGP Q K Q
Sbjct: 6 DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPH--QAKGNQ 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++++ C+YS A FST +R +P+GDR+S E L ++Q + A I + L PRSQIDI+V
Sbjct: 64 T--ESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYV 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQ DG + +NAATLAL DAGI + + + +C+A S PL D++ E+ +GGP
Sbjct: 122 EVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPK 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+TV LPT +K+ L+M + + E V++ A+ GC RE+R L AV
Sbjct: 182 LTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGC-------REIRDILEAAV 229
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/197 (51%), Positives = 144/197 (73%), Gaps = 5/197 (2%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S +GLRLDGRRP E+R++R ++G + DGSA E GNTKV+AAVYGP + +KS+
Sbjct: 5 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKS 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ +V C+YSMA FSTG+R +P+GDR+S E+S+ +RQ + A I T + PRSQIDI+V
Sbjct: 64 SAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYV 123
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA--GYLNST--PLLDLNYVEDSAG 177
+VLQADGG A +NA+TLAL DAGIP++ V SCSA +L+ PLLD+ +VE++AG
Sbjct: 124 EVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEAAG 183
Query: 178 GPDVTVGILPTLDKVTL 194
G +TV LP+ ++ +
Sbjct: 184 GVTLTVASLPSTGELEI 200
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 151/235 (64%), Gaps = 12/235 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S +GLRLDGRRP E+R+++ ++G + DGSA E GNTKV+AAVYGP Q K Q
Sbjct: 6 DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPH--QAKGNQ 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++++ C+YS A FST +R +P+GDR+S E + ++Q + A I + L PRSQIDI+V
Sbjct: 64 T--ESVINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYV 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQ DG + +NAATLAL DAGI + + + +C+A S PL D++ E+ +GGP
Sbjct: 122 EVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPK 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+TV LPT +K+ L+M + + E V++ A+ GC RE+R L AV
Sbjct: 182 LTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGC-------REIRDILEAAV 229
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 144/223 (64%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 18 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 77
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 78 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 136
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN E G D+ + ++
Sbjct: 137 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMM 196
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + + F LA++G + N RE K
Sbjct: 197 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 239
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 147/212 (69%), Gaps = 3/212 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
M+ +S +GLR DGRR E+R++R ++G + DGSA E GNTKV+AA+YGP E++ N++
Sbjct: 1 MDLLSRQGLRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRA 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ +D A++ C+YSMA FS +R R+P+ D +S E++L ++Q M I T L P+SQIDI
Sbjct: 61 KAPNDSAVINCQYSMATFSRSERKRRPR-DNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STPLLDLNYVEDSAGG 178
FVQVLQ+DGG S C+NAATLAL DAGI M + V SC++ N TPL+D++++E++ GG
Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEETMGG 179
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVM 210
P +TV ILP KV + A + E V+
Sbjct: 180 PSLTVAILPISGKVYTFVLLATILLVCIEHVL 211
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R LR E G + +ADGS+ E G K++ AVYGPRE Q + Q D+A++
Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y+MA FS +R R P DRRS EIS + + + ++ PRS ID+F++VL+A+G
Sbjct: 67 RCRYNMAPFSVEERKR-PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 125
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR A I AA++AL DAGIPMRD+V +C+AG +N +LDL+ ED AG DV V ILP
Sbjct: 126 GTRCAGITAASVALADAGIPMRDMVVACAAGKVNDQVVLDLSEEEDKAGQADVPVAILPR 185
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
++TLLQ D L + FE + LA+EGC
Sbjct: 186 TREITLLQSDGNLSDDEFERALDLAVEGC 214
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 151/226 (66%), Gaps = 4/226 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
F+ EGLRLDGRR E+R ++ E+G +++ADGS E GN KV+AAVYGPRE+ + Q
Sbjct: 8 FIDDEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++ LVR +Y+MA+FS DR+R P RRSTEIS V + E ++T P + ID+F +
Sbjct: 68 PNEVLVRYKYNMASFSVEDRIR-PGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR+A INAATLAL DAGIPM+ +V++C+ G ++ +LDLN ED+ G D+
Sbjct: 127 VLQADAGTRTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNYGQADLP 186
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
V + T D ++TLLQMD L E+ +++ +GC+ + RE
Sbjct: 187 VAM--TQDGEITLLQMDGHLTPEELEEGLEMVKKGCQQIIEIQREA 230
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 149/226 (65%), Gaps = 3/226 (1%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLR+DGR+P E+R +R +G + A+GSA+ E GNTK +AAVYGPRE K + D+A
Sbjct: 10 DGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y MA FST +R + P RR E+S VIR+ +E+ + T PR+ ID+F+++LQA
Sbjct: 70 ILRVRYHMAPFSTTER-KSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+ + AA+LAL DAGIPMRD+V + G ++ +LD+N +ED G D+ VGI+
Sbjct: 129 DGGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDEYGEADLPVGIM 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKF 230
P ++ LLQ++ L + F+ + +A +G + + +E RK+
Sbjct: 189 PNTGEIVLLQLNGVLTSGEFKQALDMAYKGVEQIYKTAKEAMYRKY 234
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 154/227 (67%), Gaps = 2/227 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGRRP ++R +R E+G + ADGSA+ E+G T V+AAVYGPREV + +++ D+A
Sbjct: 11 DGRRHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRA 70
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC Y M +FST + P RR E+S VIR+ +E I++ + PR+ IDIFV+V+ A
Sbjct: 71 VIRCRYRMLSFSTLGERKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINA 130
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
+GGTR+A I AA+LAL DAGIP+ D+V + + G ++ +LDL+ +ED G D+ + +
Sbjct: 131 NGGTRTAGITAASLALADAGIPLADLVAAVAVGKIDGVIVLDLDELEDMYGEADMPIAAM 190
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFL 231
P+L+++T+LQ++ L F+ ++L ++G K + +E RK++
Sbjct: 191 PSLNRITMLQLNGVLTKEEFKAALKLGLQGIKQIYELQKETLRRKYV 237
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 149/229 (65%), Gaps = 3/229 (1%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLR+DGR+P E+R +R +G + A+GSA+ E GNTK +AAVYGPRE K + D+A
Sbjct: 10 DGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y MA FST +R + P RR E+S VIR+ +E+ + T PR+ ID+F+++LQA
Sbjct: 70 ILRVRYHMAPFSTTER-KSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+ + AA+LAL DAGIPMRD+V + G ++ +LD+N +ED G D+ VGI+
Sbjct: 129 DGGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDKYGEADLPVGIM 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLI 233
P ++ LLQ++ L F+ + +A +G + + +E RK+ I
Sbjct: 189 PNTGEIVLLQLNGVLTPGEFKQALDMAYKGVEQIYKTAKEAMYRKYYKI 237
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 150/235 (63%), Gaps = 12/235 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S +GLRLDGRRP E+R+++ ++G + DGSA E GNTKV+AAVYGP Q K Q
Sbjct: 6 DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPH--QAKGNQ 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++++ C+YS A FST +R +P+GDR+S E L ++Q + A I + L PRSQIDI+V
Sbjct: 64 T--ESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYV 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQ DG + +NAATLAL DAGI + + + +C+A S PL D++ E+ +GGP
Sbjct: 122 EVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPK 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+TV LPT +K+ L+M + + V++ A+ GC RE+R L AV
Sbjct: 182 LTVAALPTAEKIAFLEMSERFHIDHLGTVIETAMAGC-------REIRDILEAAV 229
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 154/242 (63%), Gaps = 7/242 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+EFV GLR+DGRRP E+R++ + GN+ A GSA+F GNTK++A V GPRE ++S+
Sbjct: 4 VEFVDLSGLRIDGRRPNELRKVVIKHGNLQNATGSAIFHHGNTKIVATVCGPRECTSRSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+A+V C ++ + R ++ +GDR E+ ++RQT E I T + PRSQIDI
Sbjct: 64 ELHDRAVVTCSVIVSPSAYSHRRKRNRGDRVVAELESLVRQTFEELIFTSIFPRSQIDIS 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+++QADG R+ +NA ++AL DAG+P++D + +C GY++ LLD+N E+SA GPD
Sbjct: 124 VEIVQADGPVRACVVNAVSMALIDAGLPIKDFLCACEVGYIDGQLLLDMNGEEESARGPD 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVDIVGL 240
+ V +P D + ++ +LP F + LA+ GC RE+ K L +A+ IV L
Sbjct: 184 LYVSYMPCQDAIVSTFLEPRLPLEVFGQALDLALNGC-------REMYKMLQLALAIVML 236
Query: 241 CL 242
L
Sbjct: 237 SL 238
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 152/231 (65%), Gaps = 6/231 (2%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
F+ GLR+DGRR E+R ++ +IG +++ADGS E GN K+I+AVYGPRE+ + Q
Sbjct: 8 FIDENGLRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQR 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D A++R +Y+MA+FS DR R P RRS+EIS V + E ++T P + ID+F +
Sbjct: 68 PDAAVIRYKYNMASFSVEDRQR-PGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VL+AD GTR+A INAATLAL DAGIP++ +V++C+ G ++ +LDLN ED+ G D+
Sbjct: 127 VLEADAGTRTAAINAATLALIDAGIPLKSLVSACAVGKVDGQLVLDLNKKEDNEGEADLP 186
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKF 230
V I T D ++TLLQMD L + + M+L GC+ + RE ++KF
Sbjct: 187 VAI--TQDGEITLLQMDGHLTEDEIKQAMELVKNGCQQIQQIQREALLKKF 235
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 151/220 (68%), Gaps = 2/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME + +G RL GR E+R ++ E+G + +ADGS FE+GN K +AAVYGPRE+ +
Sbjct: 6 MELIK-DGKRLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHF 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + +A+V+ Y+MA FS DR R P DRRS EIS+V R+ ++ IL L P++ I+++
Sbjct: 65 QNAKRAVVKYRYNMAPFSVDDRKR-PGPDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQ+D GTR+A INAA++AL DAGIPMRD+V+S + G ++ +LDL+ ED+ G D
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEAD 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
V + ++ + +TLLQMD +L FE ++LA+ GC+ +
Sbjct: 184 VPIAMIARTNTITLLQMDGRLKKEEFERGLKLAMNGCRKI 223
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 148/222 (66%), Gaps = 1/222 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGRRP E+R ++ E+G + ADGSA+ E+GNTK++AAVYGPRE+ + + ++A+
Sbjct: 14 GLRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAV 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL PR+ ID+F++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR A + AA+LA+ DAGIP+RD++ + + G + +LDLN ED G D+ V ++P
Sbjct: 133 AGTRLASLMAASLAVVDAGIPVRDLIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMMP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++ ++ LLQ++ + F M+LA++G + N +E K
Sbjct: 193 SIGQINLLQLNGNMTPEEFRQGMELAMKGINIIYNLEKETLK 234
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 148/221 (66%), Gaps = 1/221 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGRRP E+R ++ EIG + ADGS++ E+GNTK+IAAVYGPRE+ + + ++A
Sbjct: 13 DGRRLDGRRPDELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ IL PRS IDIF++V+QA
Sbjct: 73 VLRVRYHMTPFSTDER-KSPAPSRREIELSKVIREALESSILVEQFPRSSIDIFMEVIQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR A + AA+LA+ DAGIP+RDI+ + + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGTRLASLMAASLAVVDAGIPVRDIIAAVAVGKADGVIVLDLNEPEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
P+L ++TL+Q++ + F+ + LA +G + N ++V
Sbjct: 192 PSLGQITLIQLNGHMSREEFKQALDLAYKGINTIYNLEKDV 232
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 150/227 (66%), Gaps = 3/227 (1%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLR+DGRRP E+R +R IG + A+GSA+ E GNTK +AAVYGPRE K + D+A
Sbjct: 11 DGLRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRA 70
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y MA FST +R + P RR E+S VIR+ +E+ + T PR+ ID+F+++LQA
Sbjct: 71 VLRVRYHMAPFSTSER-KSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQA 129
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+A + AA+LAL DAGIPM+D+V + G + +LD+N +ED G D+ VGI
Sbjct: 130 DGGTRTAGLTAASLALADAGIPMKDLVIGVAVGKVGGVLVLDINELEDEYGEADLPVGIA 189
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFL 231
P +++ LLQ++ L F+ M++A +G + + +E RK+L
Sbjct: 190 PNTNEIVLLQLNGVLTPEEFKQAMEMAFKGVEQIYKVAKEAMYRKYL 236
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ + GLR+DGRRP ++R + ++G + A GSA+ G T+V+AAVYGPRE +
Sbjct: 8 KLIDENGLRVDGRRPDQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMT 67
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D+A++R Y MA FST +R + P RR E+S VIR+ +EA + + L PR+ ID+F+
Sbjct: 68 LPDRAILRIRYHMAPFSTSER-KSPAPTRREIELSKVIREALEATVFSELFPRTTIDVFI 126
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQADGGTR+ + AA+LAL DAGIPM+D++ + G ++ +LD+N +EDS G D+
Sbjct: 127 EVLQADGGTRTTSLTAASLALADAGIPMKDLIAGVAVGKVDGVLVLDINEIEDSTGQADM 186
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
V I+P L+K+ LLQ++ L + F + +++A + K +
Sbjct: 187 PVAIMPNLNKIVLLQLNGTLTRDEFNEALKMAQKAIKEI 225
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ GLR+DGR P ++R ++ E+G + +ADGSA E G K++AAVYGP E K Q
Sbjct: 9 LIDDNGLRIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHEAYPKHVQE 68
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+D+A+VR YSMA FS +R ++P DRRS E+S VI + + + I PR+ ID++++
Sbjct: 69 ADRAIVRARYSMAPFSVDER-KRPGPDRRSIELSKVISEALTSVIFVEKYPRTSIDVYIE 127
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR A I A+LAL DAGIPMRD++ C+AG ++ +LDLN ED+ G DV
Sbjct: 128 VLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKVDDVVVLDLNKEEDNYGQADVP 187
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ ILP ++ LLQMD L M++A++ K +
Sbjct: 188 MAILPRTGEIALLQMDGDLTYEELTTAMEMAMDAAKKI 225
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 145/236 (61%), Gaps = 10/236 (4%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + GLR+DGR P ++R ++ E+G + +ADGSA E G K+IAAVYGP E K
Sbjct: 5 IKLIDDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHV 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q +D+A+VR YSMA FS +R R P DRR+ E+S VI + +E+ I PR+ ID++
Sbjct: 65 QEADRAIVRARYSMAPFSVDERKR-PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I A+LAL DAGIPMRD++ C+AG ++ +LDLN ED+ G D
Sbjct: 124 IEVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQAD 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA---------NYIREV 227
V + I+P ++ LLQMD + M +A++ + + YI EV
Sbjct: 184 VPMAIMPRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIEEV 239
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + GLR+DGR P ++R ++ E+G + +ADGSA E G K+IAAVYGP E K
Sbjct: 7 IKLIDDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHV 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q +D+A+VR YSMA FS +R ++P DRR+ E+S VI + +E+ I PR+ ID++
Sbjct: 67 QEADRAIVRARYSMAPFSVDER-KRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVY 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I A+LAL DAGIPMRD++ C+AG ++ +LDLN ED+ G D
Sbjct: 126 IEVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQAD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA---------NYIREV 227
V + I+P ++ LLQMD + M +A++ + + YI EV
Sbjct: 186 VPMAIMPRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIEEV 241
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 152/232 (65%), Gaps = 3/232 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ + +GLR+DGR+P E+R +R EIG + A+GSA+ E G TKV+AAVYGPREV K+ Q
Sbjct: 7 KLIREDGLRVDGRKPDELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREVIPKAVQ 66
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D+A++R Y MA FST + + P RR E+S VIR+ +E+ + PR+ ID+F+
Sbjct: 67 LPDRAVLRVRYHMAPFSTTEH-KSPAPTRREIELSKVIREALESVVFADQFPRASIDVFI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+V+QADGGTR+A + AA+LAL DAGIPM+D+V + G + +LD+N +ED G D+
Sbjct: 126 EVIQADGGTRTAGLTAASLALADAGIPMKDLVAGVAVGKVEGVLVLDINELEDEYGEADL 185
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFL 231
VG + ++ LLQ++ L F+ ++LA G + V ++E +K+L
Sbjct: 186 PVGYAVGIGEIVLLQLNGVLTVEEFKKAIELAKRGAEKVYALMKETLHKKYL 237
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 150/227 (66%), Gaps = 6/227 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR P ++R ++ + G + +ADGS E G KV+AAVYGPREV + Q + A
Sbjct: 10 DGKRLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y+MA+FS +R R P DRRS EIS V R+ +E+ IL L PRS IDIFV++LQA
Sbjct: 70 IVRYRYNMASFSVEERKR-PGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR A INAA++AL DAGIPM+ +V++C+ G + T +LDLN ED+ G D+ + +
Sbjct: 129 DAGTRVAGINAASVALADAGIPMKCLVSACAVGKADDTLVLDLNKDEDNYGQADLPIA-M 187
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 233
++TL QMD + ++ F + +AIEGCK + E++K L+
Sbjct: 188 NQFGEITLCQMDGHMTSDEFSTALNMAIEGCKK----LHELQKQALV 230
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E +R DGR E+R ++ + G + +ADGS+ E+G+ K++AAVYGPR+ Q + D+A
Sbjct: 9 EFVRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRA 68
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC Y+MA FS +R R P DRRS EIS + + + I+ PRS IDIF++VL+A
Sbjct: 69 IIRCRYNMAPFSVEERKR-PGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEA 127
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR A I AA++AL DAGIP+RD+V +CSAG +N +LDL ED G DV V I+
Sbjct: 128 DGGTRCAGITAASVALADAGIPLRDLVVACSAGKVNGHVVLDLTEEEDKEGEADVPVAIM 187
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
P ++TLLQ+D +L E + LAIEGC ++
Sbjct: 188 PRTKEITLLQVDGELTPEELEKAIDLAIEGCMSI 221
>gi|390344519|ref|XP_785829.2| PREDICTED: exosome complex component RRP41-like, partial
[Strongylocentrotus purpuratus]
Length = 194
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 126/161 (78%)
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
K + + D+ ++ C+YSMA FST +R +P+GDR+STE+SL +++T EA I THL PRSQI
Sbjct: 10 KGKPLHDKVIINCQYSMATFSTNERKNRPQGDRKSTEMSLHLQRTFEATIQTHLYPRSQI 69
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
DIFVQ+LQADGG AC+NAATLA+ +AGIPM+D V +CS+GY+N+TPL D++Y+E+S G
Sbjct: 70 DIFVQILQADGGNYCACVNAATLAIINAGIPMKDYVCACSSGYVNNTPLTDVSYLEESQG 129
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
GP VTV +LP +++ L +MD +L + E V+++A +GCK
Sbjct: 130 GPVVTVAMLPKSEQIALFKMDNRLHVDHLEQVLEVASKGCK 170
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 144/223 (64%), Gaps = 5/223 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ E R++ ++G + ADGSA E G K++A V+GPR+V K D +
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FS +R + P RR EIS V+++ +E ++ PR+ ID++++VLQAD
Sbjct: 75 LRVRYHMAPFSVSER-KNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GGTR A ++AA++AL DAGIPMRD+V SC+AG + +LD+N ED AG D+ +G +P
Sbjct: 134 GGTRCAALDAASVALADAGIPMRDMVCSCAAGKVADALILDVNNEEDQAGQADMPIGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV----ANYIRE 226
K+TLLQ+D L T+ F+ ++L IEGCK V N +RE
Sbjct: 194 NFGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKNALRE 236
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 148/221 (66%), Gaps = 1/221 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGRRP E+R ++ EIG + ADGS++ E+GNTK+IAAVYGPRE+ + + ++A
Sbjct: 13 DGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y M FST +R + P RR E+S VIR+ +E+ IL PRS ID+F++V+QA
Sbjct: 73 TLRVRYHMTPFSTDER-KSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR A + AA+LA+ DAGIP++D++ + + G + +LDLN ED G D+ V +L
Sbjct: 132 DAGTRLASLMAASLAVVDAGIPVKDVIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAML 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
P+L ++TL+Q++ + F+ ++LA +G + N +EV
Sbjct: 192 PSLGQITLIQLNGNMTQQEFKQGLELAYKGISTIYNLEKEV 232
>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 211
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 136/184 (73%), Gaps = 1/184 (0%)
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++S+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQ
Sbjct: 27 SRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ 86
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
IDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++A
Sbjct: 87 IDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAA 146
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAV 235
GGP + + +LP ++ LL+MD++L + E V++ A + + V + R VR+ + A
Sbjct: 147 GGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEAS 206
Query: 236 DIVG 239
++G
Sbjct: 207 ILLG 210
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 148/227 (65%), Gaps = 6/227 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR P E+R ++ + G + +ADGS E G KV+AAVYGPREV + Q + +A
Sbjct: 10 DGKRLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y+MA FS +R R P DRRS EIS V R+ +E+ +L L PRS +DIFV++LQA
Sbjct: 70 IVRYRYNMAAFSVEERKR-PGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR A INAA++AL DAGIPMR +V++CS G ++ +LDLN ED+ G D+ V +
Sbjct: 129 DAGTRVAGINAASVALADAGIPMRCLVSACSVGKIDGEVVLDLNKDEDNYGQADLPVAV- 187
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 233
+VTL QMD L F + +A++GCK + E++K L+
Sbjct: 188 NQFGEVTLCQMDGHLTEEEFGKALDMAVDGCKK----LHEMQKQALV 230
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 146/234 (62%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAG+ MRD+V S G ++ +LDLN +ED G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + TLLQ+D + F + + LAI+G + V R+ K++ IA DI G
Sbjct: 192 NLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYMTIAEDIYG 245
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 143/223 (64%), Gaps = 5/223 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ E R++ ++G + ADGSA E G K++A V+GPR+V K D +
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FS +R + P RR EIS V+++ +E ++ PR+ ID++++VLQAD
Sbjct: 75 LRVRYHMEPFSVSER-KNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GGTR A ++AA++AL DAGIPMRD+V SC+AG T +LD+N ED AG D+ +G +P
Sbjct: 134 GGTRCAALDAASVALADAGIPMRDMVCSCAAGKAADTLILDVNNEEDQAGQADMPIGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV----ANYIRE 226
K+TLLQ+D L T+ F+ ++L IEGCK V N +RE
Sbjct: 194 NFGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKNALRE 236
>gi|355686798|gb|AER98190.1| exosome component 4 [Mustela putorius furo]
Length = 186
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 136/184 (73%), Gaps = 1/184 (0%)
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++++ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQ
Sbjct: 3 SRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ 62
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
IDI+VQVLQADGGT +AC+NAATLA+ DAG+PMRD V +CSAG+++ST L DL++VE++A
Sbjct: 63 IDIYVQVLQADGGTYAACVNAATLAVLDAGVPMRDFVCACSAGFVDSTALADLSHVEEAA 122
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAV 235
GGP + + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A
Sbjct: 123 GGPQLALALLPASGQIALLEMDARLHEDHLESVLEAAARAARDVHTLLDRVVRQHVREAS 182
Query: 236 DIVG 239
++G
Sbjct: 183 VLLG 186
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 140/212 (66%), Gaps = 1/212 (0%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R E+R+++ E G + +ADGSA E+G KV+AAVYGPRE+ + ++A++R
Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C+Y+MA FS DR R P DRRS EIS + Q + + PRS ID+F++V++A+GG
Sbjct: 79 CKYNMAPFSVDDRKR-PGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEAEGG 137
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
TR A I AA++AL DAGIPMRD+V +C+AG + +LDL+ VED G DV + I+P
Sbjct: 138 TRCAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEVEDKEGQADVPIAIMPRT 197
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
++TLLQMD L FE + LAI GCK ++
Sbjct: 198 GEITLLQMDGNLTEEEFEQALDLAINGCKIIS 229
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 150/220 (68%), Gaps = 2/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME + +G RL GR E+R ++ ++G + +ADGS FE+GN K IAAVYGPRE+ +
Sbjct: 6 MELIK-DGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHF 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + A+V+ Y+MA FS DR R P DRRS EIS+V R+ ++ IL L P++ I+++
Sbjct: 65 QNAKMAVVKYRYNMAPFSVDDRKR-PGPDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQ+D GTR+A INAA++AL DAGIPM+D+V+S + G ++ +LDL+ ED+ G D
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMKDLVSSVAIGKIDGEVVLDLDAKEDNFGEAD 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + ++ + +TLLQMD +L FE +QLA+ GC+ +
Sbjct: 184 MPIAMVARTNTITLLQMDGRLKKEEFERGLQLAMTGCRKI 223
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 127/168 (75%)
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++S+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQ
Sbjct: 27 SRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ 86
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
IDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++A
Sbjct: 87 IDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAA 146
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
GGP + + +LP ++ LL+MD++L + E V++ A + + V +
Sbjct: 147 GGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLL 194
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 2/233 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
EG R DGR P +MR++ +G ++ ADGSA+ GNT +AAVYGPRE+ + + D+A
Sbjct: 11 EGKRADGRAPDQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMHPRHLSLPDKA 70
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y MA FST D + P RR EIS V+R+ +E I PRS+ID+F+++LQA
Sbjct: 71 VMRVRYHMAPFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFIEILQA 130
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DG TR A + AA+LAL DAGIPMRD+V S G +N +LDLN +ED+ G D+ VG +
Sbjct: 131 DGSTRVASLTAASLALADAGIPMRDLVIGVSVGLVNGVVVLDLNGLEDNYGEGDMPVGYM 190
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
P L +++LLQ+D F + ++LAI+G + V + RE K+ IA ++
Sbjct: 191 PNLRRISLLQLDGAWTRERFTEALRLAIKGAEYVYSKAREALKSKYFEIAEEV 243
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 4/219 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
++ +GLRLDGR E+R ++ EIG +++ADGS E G KV+ V+GPRE + Q
Sbjct: 8 LITDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQR 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+D A++R +Y+MA+FST DR R P RRS EIS V R+ E I+ L P++ IDIFV+
Sbjct: 68 ADTAVIRYKYNMASFSTEDRAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
+LQAD GTR+A INA+++AL DAGIPM+ +VTSC+ G ++ +LDLN ED+ G D
Sbjct: 127 ILQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNYGEADFP 186
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
V + T D ++TLLQMD L T+ +L +GCK +
Sbjct: 187 VAM--TQDGEITLLQMDGNLTTDEIRKGFELVKKGCKEI 223
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 140/213 (65%), Gaps = 1/213 (0%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R L+ E G + +ADGSA E+G+ KV+AAVYGPRE+ + + A++R
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C Y+MA FS DR R P DRRS EIS + + + + PRS IDIF++V+QA+GG
Sbjct: 86 CRYNMAPFSVDDRKR-PGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVIQAEGG 144
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
TR A I AA++AL DAGIPMRD+V++C+AG + ++DL+ ED G D+ + ++P
Sbjct: 145 TRCAGITAASVALADAGIPMRDMVSACAAGKADGQVIMDLSEWEDKEGEADLPIAMMPRT 204
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
+TLLQMD L + FE + LAI+GCK ++
Sbjct: 205 GDITLLQMDGHLTDDEFEKALDLAIKGCKIISE 237
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 150/220 (68%), Gaps = 2/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME + +G RL GR E+R ++ E+G + +ADGS FE+GN KVIA VYGPRE+ +
Sbjct: 6 MELIK-DGKRLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHF 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + A+V+ Y+MA FS DR R P DRRS EIS+V R+ ++ IL L P++ I+++
Sbjct: 65 QNAKMAVVKYRYNMAPFSVDDRKR-PGPDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQ+D GTR+A INAA++AL DAGIPMRD+V+S + G ++ +LDL+ ED+ G D
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEAD 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + ++ + +TLLQMD +L FE ++LA++G + +
Sbjct: 184 MPIAMIARTNTITLLQMDGRLKKEEFERGLKLAMDGSRKI 223
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR P +MR+++ ++G V+ ADGSAV G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + TLLQ+D F + + LA++G + V RE K++ IA +I G
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALKNKYMAIAEEIYG 245
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 139/218 (63%), Gaps = 1/218 (0%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R L+ E G + +ADGS+ E G K++ AVYGPRE Q + Q D+A++
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y+MA FS +R R P DRRS EIS + + + ++ PRS ID+F++VL+A+G
Sbjct: 76 RCRYNMAPFSVEERKR-PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR A I AA++AL DAGIPMRD+V +C+AG + +LDL+ ED G DV V ILP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++TLLQ D L FE + LA+EGC + +E
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKE 232
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 141/213 (66%), Gaps = 1/213 (0%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R L+ E G + +ADGS+ E+G+ KV+AAVYGPRE+ + + A++R
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C Y+MA FS DR R P DRRS EIS + + + + PRS IDIF++VLQA+GG
Sbjct: 86 CRYNMAPFSVDDRKR-PGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVLQAEGG 144
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
TR A I AA++AL DAGIPMRD+V++C+AG + ++DL+ ED G D+ + ++P
Sbjct: 145 TRCAGITAASVALADAGIPMRDMVSACAAGKADGQVIMDLSEGEDKEGEADLPIAMMPRT 204
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
+TLLQMD L ++ FE + LA++GCK ++
Sbjct: 205 GDITLLQMDGHLTSDEFEKALDLAVKGCKIISE 237
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G ++ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK--FLLIAVDIVG 239
L + TLLQ+D + + + LA++G + V R+ K ++ IA +I G
Sbjct: 192 NLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYMAIAEEIYG 245
>gi|403303026|ref|XP_003942148.1| PREDICTED: uncharacterized protein LOC101043625 [Saimiri
boliviensis boliviensis]
Length = 413
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 139/192 (72%), Gaps = 3/192 (1%)
Query: 51 GPREV--QNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIL 108
GPR ++++ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA IL
Sbjct: 221 GPRGAIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAIL 280
Query: 109 THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD 168
T L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D
Sbjct: 281 TQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALAD 340
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REV 227
L++VE++AGGP + + +LP ++ LL+MDA+L + E V++ A + + V + R V
Sbjct: 341 LSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVV 400
Query: 228 RKFLLIAVDIVG 239
R+ + A ++G
Sbjct: 401 RQHVREASILLG 412
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 143/223 (64%), Gaps = 5/223 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ E R++ ++G + ADGSA E G K++A V+GPR+V K D +
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FS +R + P RR EIS V+++ +E ++ PR+ ID++++VLQAD
Sbjct: 75 LRVRYHMEPFSVSER-KNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG+R A ++AA++AL DAGIPMRD+V SC+AG +LD+N ED AG D+ +G +P
Sbjct: 134 GGSRCAALDAASVALADAGIPMRDMVCSCAAGKAADALILDVNNEEDQAGQADMPIGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV----ANYIRE 226
L K+TLLQ+D L T+ F+ ++L +EGCK V N +RE
Sbjct: 194 NLGKITLLQLDGVLTTDEFKKCIELGLEGCKQVYEIQKNALRE 236
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 147/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGRRP E+R ++ EIG + ADGS++ E+GNTK+IAAVYGPRE+ + + ++A
Sbjct: 13 DGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y M FST +R + P RR E+S VIR+ +E+ +L PRS ID+F++V+QA
Sbjct: 73 TLRVRYHMTPFSTDER-KSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQA 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR A + AA+LA+ DAGIP+RD + + + G + +LDLN ED G D+ V ++
Sbjct: 132 DAGTRLASLMAASLAIIDAGIPVRDAIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMM 191
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L ++TL+Q++ + F+ + LA +G + + +EV K
Sbjct: 192 PSLGQITLIQLNGHMTPEEFKQGLDLAYKGINTIYSMEKEVLK 234
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 145/219 (66%), Gaps = 4/219 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
++ +GLRLDGRR E+R ++ E+G +++ADGS E G K++ V+GPRE + Q
Sbjct: 10 LITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQR 69
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+D A++R Y+MA+FS DR R P RRS EIS V R+ E I+ L P++ IDIFV+
Sbjct: 70 ADSAVIRYRYNMASFSVEDRAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR+A INA+++AL DAGIPM+ ++TSC+ G ++ +LDLN ED+ G D
Sbjct: 129 VLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFP 188
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
V + T D ++TL+QMD L + + ++L +GCK +
Sbjct: 189 VAM--TQDGEITLIQMDGNLTPDEIKQGLELVKKGCKEI 225
>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
carolinensis]
Length = 188
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 127/164 (77%)
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++S+ + DQA+V C++S+A FSTG+R R+P GDR+++E+SL ++QT EA ILT L PRSQ
Sbjct: 4 SRSKALHDQAVVNCQFSLATFSTGERKRRPHGDRQTSEMSLHLKQTFEAAILTQLYPRSQ 63
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
IDI+VQ+LQADGG A +NAATLA+ DAGIP+RD V + SAG++ TPL DLNYVE+++
Sbjct: 64 IDIYVQILQADGGNYCASVNAATLAVIDAGIPLRDYVCASSAGFIEDTPLADLNYVEEAS 123
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
GGP + + +LP +++ LL+M+A+L + E +M+ A + CK V
Sbjct: 124 GGPQLALALLPKSEQIALLEMNARLHEDHLERIMEAASKACKDV 167
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 143/221 (64%), Gaps = 2/221 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR E+R +R + G + +ADGS E G KV+AAVYGPREV + Q + +A
Sbjct: 10 DGKRLDGRGLNELRPIRFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y+MA FS +R R P DRRS EIS V R+ +E+ I+ L PRS IDIFV++LQA
Sbjct: 70 IVRYRYNMAAFSVEERKR-PGPDRRSIEISKVSREALESVIMQELYPRSAIDIFVEILQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR A INAA++AL DAGIPMR +V++C+ G ++ +LDLN ED+ G D+ V +
Sbjct: 129 DAGTRVAGINAASVALADAGIPMRCLVSACAVGKVDGELVLDLNKDEDNYGQADLPVA-M 187
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
++TL QMD + F + +AIEGCK + R+
Sbjct: 188 NQFGEITLCQMDGHMTEEEFGRALDMAIEGCKKLHQMQRQA 228
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 150/220 (68%), Gaps = 2/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME + +G RL GR E+R ++ ++G + +ADGS FE+G+ K +AAVYGPRE+ +
Sbjct: 6 MELIK-DGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHF 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + A+V+ Y+MA FS DR R P DRRS EIS+V R+ ++ IL L P++ I+++
Sbjct: 65 QNAKMAVVKYRYNMAPFSVDDRKR-PGPDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQ+D GTR+A INAA++AL DAGIPMRD+V+S + G ++ +LDL+ ED+ G D
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEAD 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + ++ + +TLLQMD +L FE +++A+ GC+ +
Sbjct: 184 MPIAMIARTNTITLLQMDGRLKKEEFERGLKIAMSGCRKI 223
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 145/228 (63%), Gaps = 4/228 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
F+ GLRLDGR EMR + EIG +++ADGS E G K++AAVYGPRE+ + Q
Sbjct: 8 FIDENGLRLDGRAVDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPRELHPRRMQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+VR Y+MA FS DR R P RRS EIS V R I+T P + ID+F +
Sbjct: 68 PDEAIVRYRYNMAAFSVEDRAR-PGPSRRSIEISKVSRDAFAPIIMTKYYPSAVIDVFAE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR+A INAA++AL DAGIPM+ ++++C+ G ++ +LDL+ ED+ G D+
Sbjct: 127 VLQADAGTRTAAINAASIALADAGIPMKGLISACAVGKVDGQLVLDLSKDEDNYGNADLP 186
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ + T D +++LLQMD L F+ +++A EGC+ + +E K
Sbjct: 187 IAM--TQDGEISLLQMDGNLTKEEFKKALEMATEGCRQILEIQKEALK 232
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 142/220 (64%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G+R DGR+ E R++ + G + ADGSA E G+ K++ V+GPR+V K
Sbjct: 8 MVLLDENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SNTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +G +P+L+K+TLLQ+D L ++ +Q+ ++GCK V
Sbjct: 187 MPIGYMPSLEKITLLQLDGVLTPEEYKKCVQVGVDGCKIV 226
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 143/214 (66%), Gaps = 1/214 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR E+R ++ E+G + +ADGS E+G+ KVIAAVYGPRE+ + Q + A
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+V+ Y+MA FST DR R P DRRS EIS V R+ + I+ L P+ I+++V++LQ+
Sbjct: 70 VVKFRYNMAPFSTDDRKR-PGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA++AL DAGIPM+D+V+S + G +N +LDLN ED+ G D+ + ++
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGEMVLDLNAAEDNNGEADMPIAMI 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +T LQMD +L FE ++LA+ C +
Sbjct: 189 ARTNTITALQMDGRLTKEEFERGLKLAVGACHQI 222
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E +R DGR+ E+R ++ E G + +ADGSA E+G K++ AVYGPRE + +
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 63
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC Y+MA FS DR R P DRRS+EIS + + ++ PRS +DI+++V++A
Sbjct: 64 VIRCRYNMAPFSVDDRKR-PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEA 122
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
+GGTR A I AA++AL DAGIPM+DIV C+AG +N +LDL+ VED G DV + ++
Sbjct: 123 EGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDEIILDLSEVEDKEGQADVPIAMM 182
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
P ++TLLQ D L FE+ + LA+EGC+ V +E
Sbjct: 183 PRTGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKE 222
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 138/212 (65%), Gaps = 1/212 (0%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGRRP E+R AE+ ADGSA G T+V A VYGPRE +N++Q M D+ALV
Sbjct: 12 LRSDGRRPLELRSFSAELTTHPSADGSASVSHGLTQVTACVYGPREAKNRAQTMHDRALV 71
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
E +A ++ R ++ KGDRR+ E + ++ T E I T L PRS+IDI + VLQ DG
Sbjct: 72 NIEVEVAPWAGEVRRQRTKGDRRTAEFAASVKATFEPVIQTTLYPRSEIDIHIHVLQLDG 131
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
G A INA TLAL DAGIPM D V+S SAG ++T +LDL +E+S P VTV +LP
Sbjct: 132 GLLQAGINATTLALVDAGIPMLDYVSSLSAGLYHTTAMLDLTNLEES-DLPSVTVAVLPR 190
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
KVTL+ M+ +L + FE++ +LA+EG K +
Sbjct: 191 SGKVTLVSMETRLHVDRFEEMFKLAMEGGKVL 222
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E +R DGR+ E+R ++ E G + +ADGSA E+G K++ AVYGPRE + +
Sbjct: 3 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 62
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC Y+MA FS DR R P DRRS+EIS + + ++ PRS +DI+++V++A
Sbjct: 63 VIRCRYNMAPFSVDDRKR-PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEA 121
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
+GGTR A I AA++AL DAGIPM+DIV C+AG +N +LDL+ VED G DV + ++
Sbjct: 122 EGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMM 181
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
P ++TLLQ D L FE+ + LA+EGC+ V +E
Sbjct: 182 PRTGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKE 221
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E +R DGR+ E+R ++ E G + +ADGSA E+G K++ AVYGPRE + +
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 63
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC Y+MA FS DR R P DRRS+EIS + + ++ PRS +DI+++V++A
Sbjct: 64 VIRCRYNMAPFSVDDRKR-PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEA 122
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
+GGTR A I AA++AL DAGIPM+DIV C+AG +N +LDL+ VED G DV + ++
Sbjct: 123 EGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMM 182
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
P ++TLLQ D L FE+ + LA+EGC+ V +E
Sbjct: 183 PRTGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKE 222
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 3/221 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ GLR+DGRRP EMR++R E+G + K DGSA E+G T++ A V GPREV K ++
Sbjct: 9 LIDENGLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLEL 68
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ ++ C Y MA+FS +R KP G RR E+S VIR+ +E + PR IDIFV
Sbjct: 69 PDKGVINCRYHMASFSVDER--KPLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFV 126
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+V+QADGGTR+A I AA+LAL DAGIPM D++ + + G ++ +LD+N ED G D+
Sbjct: 127 EVIQADGGTRTAGITAASLALADAGIPMADMIAAIAVGKVDGVLVLDINEQEDKYGEADM 186
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
V I P L+ + LLQ++ ++ + +++A + + + +
Sbjct: 187 PVAIAPHLNSIVLLQLNGRMTPEEVDKGLEMAQQAVQKIHH 227
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 145/217 (66%), Gaps = 4/217 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+F+ GLRLDGRR E+R ++ +IG +++ADGS E G KV+AAVYGPR + + +Q
Sbjct: 7 KFIDDNGLRLDGRRVDEIRPMKIDIGVLSRADGSCYLEWGKNKVLAAVYGPRTLHPRRKQ 66
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D AL+R Y+MA+FS DR+R P RRS EIS V + E +LT P + IDIF
Sbjct: 67 IPDAALIRYRYNMASFSVEDRIR-PGPSRRSVEISKVSAEAFEPVVLTKFYPNTVIDIFT 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+++QAD GTR+A INAA++AL DAGIPM+ +V++C+ G ++ +LDLN ED+ G D+
Sbjct: 126 EIIQADAGTRTAAINAASIALADAGIPMKGLVSACAVGKVDGQLVLDLNKDEDNFGAADL 185
Query: 182 TVGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGC 217
V + T D ++TL+QMD L F++ +++ GC
Sbjct: 186 PVAM--TQDGEITLIQMDGNLTQEEFKEAIEMVRAGC 220
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 154/232 (66%), Gaps = 4/232 (1%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGRR E+R ++ E+G +A+ADGS EMG KVIAAVYGPREV + Q +A
Sbjct: 14 DGLRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y+MA+FS +R ++P DRRS E+S V R+ +E ILT PRS ID+FV+VLQA
Sbjct: 74 IVRYRYNMASFSVEER-KRPGPDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA +AL DAGIPM+ +++SC+AG + T +LD ED+ G D+ + +
Sbjct: 133 DAGTRTAGINAAAVALADAGIPMKSMISSCAAGKVGDTIVLDPMKEEDNFGQADLPIAMT 192
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKFLLIAVD 236
P D +TL+QMD L + F + +A++G K + R V K+ I+ D
Sbjct: 193 PNGD-ITLMQMDGNLTPDEFGQAVTMAMKGAKDIYELQRRALVAKYSQISTD 243
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 137/213 (64%), Gaps = 1/213 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ E R++ + G + ADGSA E G K++A V+GPR+V K D +
Sbjct: 15 GIRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FS +R + P RR EIS V+++ +E ++ PR+ ID+F++VLQAD
Sbjct: 75 LRVRYHMEPFSVDER-KNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GGTR A ++AA++AL DAGIPMRD+V +C+AG + T ++D+N ED AG D+ VG +P
Sbjct: 134 GGTRCAALDAASVALADAGIPMRDMVCACAAGKVADTLIIDVNNEEDQAGQADMPVGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
L KVTLLQ+D L F+ ++L IEG K V
Sbjct: 194 NLGKVTLLQLDGVLTPEEFKKCVELGIEGSKQV 226
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 142/225 (63%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ E G + +ADGSA E G K+I VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R R P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAVVKARYNMAAFSVDERKR-PGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A + AAT+AL DAGIPMRD+V C+AG ++ +LDL+ ED+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEAD 187
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+ + I+P ++ LLQMD + + F + + IE K ++ R
Sbjct: 188 IPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQR 232
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 139/220 (63%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G R DGR E R++ + G + ADGSA E G+ K++ V+GPR+V K
Sbjct: 8 MVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SNTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V
Sbjct: 187 MPIGYMPNLEKITLLQLDGVLTPEEYKKCVQVGVDGCKLV 226
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E I+ PRS+ID+FV++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ +G +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + TLLQ+D + F + LA+ G + V R+ K++ IA +I G
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYMSIAEEIYG 245
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 144/221 (65%), Gaps = 4/221 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++F+ GLRLDGRR E+R + E+G +++ADGS E GN KV+AAVYGPRE+ +
Sbjct: 6 VKFIDENGLRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRL 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q +ALVR Y+MA FS DR+R P RRSTEIS V + E ++ P + ID+F
Sbjct: 66 QRPSEALVRYRYNMAAFSVEDRIR-PGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+VLQAD GTR+A INAATLAL DAGIPM+ +V +C+ G ++ ++DLN ED+ G D
Sbjct: 125 AEVLQADAGTRTAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNYGDAD 184
Query: 181 VTVGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + + T D ++TLLQMD L + +++ +GC+ +
Sbjct: 185 LPIAM--TEDGEITLLQMDGNLTADEIAKGVEMVRKGCEQI 223
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 140/220 (63%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G+R DGR+ E R++ + G + ADGSA E G+ K++ V+GPR+V K
Sbjct: 8 MVLLDENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SNTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +G +P+L K+TLLQ+D L ++ + + ++GC+ V
Sbjct: 187 MPIGYMPSLKKITLLQLDGVLTPEEYKKCVDVGVKGCELV 226
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR E+R ++ E+G + +ADGS E+GN KVIAAVYGPRE+ + Q + A
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+V+ Y+MA FST DR R P DRRS EIS V R+ + I+ L P+ ID++V++LQ+
Sbjct: 70 VVKFRYNMAPFSTDDRKR-PGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQS 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA++AL DAGIPM+D+V+S + G + +LDLN ED+ G D+ + ++
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMI 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +T LQMD ++ F ++LA+ C +
Sbjct: 189 ARTNTITALQMDGRMTQEEFGRGLKLAMGACHQI 222
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 141/225 (62%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ GLR DGRR E+R L ++ ADGSA+ G T +A V+GPRE + +S
Sbjct: 3 VEILNEGGLRSDGRRQHELRSLGMQLATQGAADGSALVSHGLTTALAVVHGPREGRLRSL 62
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A++ +A FS G+R ++ KGDRR+ E++ ++ T E + THL PRSQIDI
Sbjct: 63 TLHDRAVIDVTVIVAPFSQGERRKRTKGDRRTQELAAAVKATFEPAVQTHLYPRSQIDIC 122
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ VL DGG ACINA TLAL +AG+PM D V + S G +++ LLDL +E++ P
Sbjct: 123 IHVLHQDGGVLQACINATTLALMNAGVPMYDYVCAVSTGVFSTSALLDLTSLEET-DVPH 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+TVG+LP KVTLL MD +L FE++ +LA+E + +R
Sbjct: 182 LTVGVLPRSRKVTLLSMDTRLHVERFEEIFRLAVEAAAVLHEEMR 226
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 139/220 (63%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G R DGR E R++ + G + ADGS+ E G+ K++ V+GPR+V K
Sbjct: 8 MVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SDTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V
Sbjct: 187 MPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLV 226
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
EG R DGR E+R ++ E+G + +ADGS E+GN KVIAAVYGPRE+ + Q + A
Sbjct: 10 EGKRSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+++ Y+MA FST DR R P DRRS EIS V R+ + I+ L P+ I+++V++LQ+
Sbjct: 70 VIKFRYNMAPFSTDDRKR-PGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA++AL DAGIPM+D+V+S + G +N +LDLN ED+ G D+ + ++
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGEVVLDLNAAEDNNGEADMPIAMI 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +T LQMD ++ F ++LA+ C +
Sbjct: 189 ARTNTITALQMDGRMTQEEFGRGLKLAMGACHQI 222
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 146/222 (65%), Gaps = 1/222 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR+ E+R ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A
Sbjct: 14 GLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKAS 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL +L PR+ IDIF++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + + +LDLN ED G D+ + +LP
Sbjct: 133 AGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+L +V LLQ++ + + F +LA +G ++ +E K
Sbjct: 193 SLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR E+R ++ E+G + +ADGS E+G+ KVIAAVYGPRE+ + Q + A
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+V+ Y+MA FST DR R P DRRS EIS V R+ + I+ L P++ I+++V++LQ+
Sbjct: 70 VVKFRYNMAPFSTDDRKR-PGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQS 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+A INAA++AL DAGIPM+D+V+S + G + +LDLN ED+ G D+ + ++
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMI 188
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +T LQMD +L F ++LA+ C +
Sbjct: 189 ARTNTITALQMDGRLTKEEFGRGLKLAMGACHQI 222
>gi|408404985|ref|YP_006862968.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365581|gb|AFU59311.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 247
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ G R DGR E+R+++ +G V ADGSA E G K++AAVYGPREV K
Sbjct: 7 LIDENGKRTDGRGIDELREVKITVGTVKNADGSAFIEFGKNKILAAVYGPREVHPKHMAQ 66
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
SD+ ++RC Y M+ FST D + P RR EIS V+R+ +E ++ PR+ ID+FV+
Sbjct: 67 SDRCVLRCRYHMSPFST-DTRKNPAPSRREVEISKVMREALEPALMLEDYPRAAIDVFVE 125
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQ+DGG+R A I AA +AL DAGI MRD+V +C+AG ++ +LD+N ED G D+
Sbjct: 126 VLQSDGGSRCAGITAAAVALADAGINMRDLVAACAAGKVDDKIVLDINDTEDKEGSADMP 185
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
V +P L+++TLLQ+D KL + F + + AI GCK V
Sbjct: 186 VAYMPRLEQITLLQLDGKLTPDQFNECLDKAIGGCKMV 223
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 144/232 (62%), Gaps = 44/232 (18%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
EFVSPEGLR+DGRRP E+R++ A++G V+KADGSA+F GNT+V+A +YGP+E
Sbjct: 5 EFVSPEGLRMDGRRPGELRRIEAKMGVVSKADGSALFRQGNTQVLATIYGPKE------- 57
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
A F++G+R K K D+++ E+ ++IRQT E+ ++T L PRSQIDI+V
Sbjct: 58 -------------AGFASGERKSK-KTDKKTVELGMLIRQTFESVVMTALYPRSQIDIYV 103
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
QVLQ+DGG SA INA TLA+ DA D N+VE++AGGP++
Sbjct: 104 QVLQSDGGALSAAINATTLAMIDA----------------------DPNFVENTAGGPEL 141
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR-EVRKFLL 232
V I P V ++M++KLP +E V +LAI+GC + + EVR + L
Sbjct: 142 LVAIEPKSQLVVSMEMESKLPMEMYERVAKLAIDGCNLIYRVLTDEVRDYTL 193
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 136/223 (60%), Gaps = 2/223 (0%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFS 78
MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ ++R Y MA FS
Sbjct: 1 MREVKISVGVVSNADGSAMVSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 60
Query: 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAA 138
T D + P RR EIS V+R+ +E I+ PRS+ID+FV++LQADG TR A + AA
Sbjct: 61 TKDERKSPTPSRREIEISKVLREALEPAIMLEQYPRSRIDVFVEILQADGSTRVASLTAA 120
Query: 139 TLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD 198
+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ VG +P L + TLLQ+D
Sbjct: 121 SLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLKRFTLLQLD 180
Query: 199 AKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
F + LA+ G + V R+ K+ IA +I G
Sbjct: 181 GAWTREAFLQALNLAVRGAEHVYQIARDALKTKYTSIAEEIYG 223
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 143/226 (63%), Gaps = 1/226 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGRR E+R L ++ +ADGSA+ G T+V+ +V+GPRE + +S
Sbjct: 8 IEILNDAGFRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSH 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A + E ++A+FSTG+R ++ KGD+R E + I+ T E + T L PRSQIDI+
Sbjct: 68 TFHDRANINVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+Q+LQ DGGT CIN TLAL +AGIPM D V + S G +++P+LDL +E++ P
Sbjct: 128 IQILQQDGGTLQTCINGTTLALINAGIPMSDFVCAISGGVHSTSPMLDLTTLEEN-DVPH 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
VTV ++P KV L+ M+ +L FE+V+ LA + + ++E
Sbjct: 187 VTVAVMPKSKKVVLVTMETRLHVERFEEVLCLARDAAAVLHKEMKE 232
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 137/214 (64%), Gaps = 1/214 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G RLDGR+P ++R + ++G +ADGSA E GNTKV+ AVYGP E + +++
Sbjct: 1 MNIISEHGFRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ V C+YSMA FST +R +P+GDRRS E + ++ + E IL P +QIDIF
Sbjct: 61 TQEDRCTVNCQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS-AGYLNSTPLLDLNYVEDSAGGP 179
++LQADG +AC+NAATLAL DAG+PMR +V + S A L+ TP D++ E+S P
Sbjct: 121 CELLQADGSHLAACVNAATLALADAGVPMRGLVAAASCACALDGTPCADVSAREESNVMP 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+T+ + +D++ L ++ +L + ++Q A
Sbjct: 181 RITIANISGMDEIILTELQNRLHRDHLIPMLQCA 214
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 143/220 (65%), Gaps = 1/220 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGRR E+R ++ ++G + A+GSA+ E G TKV+AAV+GPRE + + D+A
Sbjct: 17 DGTRLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRA 76
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y MA FST +R + P RR E+S VIR+ +E+ + + PR+ IDIF++VLQA
Sbjct: 77 TLRVRYHMAPFSTSER-KSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQA 135
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+A + AA++AL DAGIPM+D+V + G + +LD++ +ED G D+ +GI
Sbjct: 136 DGGTRTAGLTAASVALADAGIPMKDLVIGVAVGKIEGNLVLDISELEDEYGEADLPLGIA 195
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
P + ++ LLQ++ L + ++LA +G ++ +E
Sbjct: 196 PNIGEIVLLQLNGVLTPEELKAGIELAWKGVDSIYKIAKE 235
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 144/229 (62%), Gaps = 6/229 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G RLDGR E+R ++ E G + +ADGS EMG KV+AAVYGPREV K + +A+
Sbjct: 10 GKRLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAI 69
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R YSMA FS +R R P DRRS EIS V R+ +E I+ L PRS IDIFV+VLQAD
Sbjct: 70 IRYRYSMAPFSVEERKR-PGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQAD 128
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL- 186
G+R+AC+NAA++AL DAGIPM+ +VTS + ++ +LD ED+ G D+ L
Sbjct: 129 AGSRTACLNAASVALIDAGIPMKGMVTSVAVAKVDGILVLDPMKEEDNYGEADIPFAFLI 188
Query: 187 --PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKFL 231
++ +TLLQMD ++ + +++A +G + RE ++K++
Sbjct: 189 RNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREAILKKYI 237
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 144/230 (62%), Gaps = 1/230 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VS GLR DGRRP E+R++ +G + ADGSA + G T+V+A V+GP EV +S+
Sbjct: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEV 66
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ ++ CE+ FS DR ++ DR S E SL ++QT E ++ +L PR+Q+DI V
Sbjct: 67 QHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQV 126
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
VLQ DG INA +LAL DAG+ M+++VT+CS L+ P+LD+ Y E S+GG +
Sbjct: 127 YVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYM 186
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR-EVRKF 230
+ P ++ L+Q +A+L E++M A+EG + V+ + +V+++
Sbjct: 187 PLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEY 236
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 141/226 (62%), Gaps = 1/226 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ + G + +ADGSA E G K++ VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R ++P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAIVKARYNMAAFSVDER-KRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A + AAT+AL DAG+PMRD+V C+AG ++ +LDL+ ED+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEAD 187
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ + I+P + L+QMD + + M + E K ++ RE
Sbjct: 188 IPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQRE 233
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 142/229 (62%), Gaps = 6/229 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR P E+R ++ E G + ADGS EMG KV+AAVYGPR+VQ K QA
Sbjct: 10 DGRRIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQA 69
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y+MA FS +R R P DRRS EIS V R+ +E+ I+ L PRS IDIFV+VLQA
Sbjct: 70 IVRYRYNMAPFSVEERKR-PGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQA 128
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R+AC+NAA++AL DAGIPM+ I+TS + ++ +LD ED+ G D+
Sbjct: 129 DAGSRTACLNAASVALVDAGIPMKGIITSVAVAKVDGVLVLDPMKEEDNYGEADIPFAFF 188
Query: 187 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKF 230
++ + LLQMD ++ ++LA +G + RE +RK+
Sbjct: 189 IRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREAIMRKY 237
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 143/229 (62%), Gaps = 6/229 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR E+R ++ E G + +ADGS EMG K++AAVYGPREV + Q +A
Sbjct: 11 DGKRLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRA 70
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R +KP DRRS EIS V R+ +E IL L PRS IDIFV+VLQA
Sbjct: 71 IIRYRYNMAPFSVEER-KKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQA 129
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D GTR+AC+NAA++AL DAG+ MR ++T+ + + +LD ED+ G DV L
Sbjct: 130 DAGTRTACLNAASVALIDAGVAMRGMITAVAVAKVEGEIVLDPMKEEDNYGEADVPFAFL 189
Query: 187 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKF 230
++ + LLQMD K+ + ++LA +G + N RE +RK+
Sbjct: 190 IRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAIMRKY 238
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 143/228 (62%), Gaps = 5/228 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E +R DGR +R ++ E+G + ADGSA E GN K++ VYGPRE+ +K D A
Sbjct: 4 EFIRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGA 63
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC+Y+MA FS +R R P +RRSTEIS +I + + I PR+ IDI ++VL+A
Sbjct: 64 VLRCKYNMAPFSVKERKR-PGPNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEA 122
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
+GGTR I A+LAL DA IPM+D++++C+ G ++ +LDL+ ED G D+ + I+
Sbjct: 123 EGGTRCLGIVGASLALADAEIPMKDLISACAVGKVDDHIVLDLSEQEDQTGQADMPLAII 182
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIA 234
P ++T LQMD L FE+ + LA +GC YI +++K L++
Sbjct: 183 PRTGEITFLQMDGNLTQEEFEEALDLAYDGCY----YINQLQKEALLS 226
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 146/224 (65%), Gaps = 2/224 (0%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
F+ +G RLDGR+P E+R ++ ++G + ADGSA+ E G T+V+AAVYGP+E Q KS +
Sbjct: 10 FIDDDGKRLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKESQ-KSMLL 68
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A +R Y MA FST +R + P RR E+S V+R+++E ++T PR+ ID+F++
Sbjct: 69 PDRATLRVRYHMAPFSTEER-KNPAPTRRELELSKVLRESLEPVVITEYFPRTSIDVFIE 127
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQ+DGGTR+ AA+LAL DAGIPMR +V + G +++ ++DLN VED G D+
Sbjct: 128 VLQSDGGTRTVGATAASLALADAGIPMRALVAGVAIGKVDNVLIVDLNEVEDMYGDADMP 187
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V P + ++TL Q++ L F + + +A++ + + +E
Sbjct: 188 VVAAPDIGQITLYQLNGVLTKEEFHNAIDMAMKVITKIVDMEKE 231
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 142/226 (62%), Gaps = 3/226 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ G R+DGR P EMR LR E G + ADGSA E+GN KV+AAVYGPRE + + +
Sbjct: 9 LIDENGRRVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEAL 68
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+++C YSM FS +R + P+ RR E+S VIR+ + + + PR+ I++++
Sbjct: 69 PDRAILKCRYSMLPFSVAER-KSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIH 127
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
+L+ADGGTR+A I A ++AL DAGI MRD+V + + G + + +LD+N +ED G D+
Sbjct: 128 ILEADGGTRTASIIAGSVALADAGIAMRDLVAAIAVGKIGNVLVLDINGIEDQYGDGDMP 187
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR 228
+ ++P ++TLLQ D E+ ++LA + + + Y +VR
Sbjct: 188 IAMMPQRGEITLLQADGVFTPQEIEEALRLAQKAFQKI--YAEQVR 231
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 135/214 (63%), Gaps = 1/214 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R DGR+P ++R L ++G ++ADGSA E GNTKV+ AVYGP E + +S+
Sbjct: 1 MNIISEHGYRQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+ ++ C+YSMA FST +R +P+GDRRS E + ++ + EA +LT PRSQID+F
Sbjct: 61 LLEDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS-AGYLNSTPLLDLNYVEDSAGGP 179
++LQADG +AC+N TLAL DAG+PMR +V + S A N +D+N E+ P
Sbjct: 121 CELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPNGVACVDVNSREEMGIIP 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+TV + D V L ++ +L N +++ A
Sbjct: 181 RLTVATISGQDAVVLAELQNRLHKNYLIVILEAA 214
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 6/236 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGR+ E+R ++ E + +ADGS EMG KVIAAV+GPREV + Q +A
Sbjct: 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R R P DRRS EIS V ++ EA I+ L PRS IDIFV+VLQA
Sbjct: 74 IIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R+AC+NAA++AL DAG+PM+ ++TS + G + +LD ED+ G D+ L
Sbjct: 133 DAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFL 192
Query: 187 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKFLLIAVDI 237
++ + LLQMD ++ + + ++LA +G + RE +R+++ + ++
Sbjct: 193 IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEM 248
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 139/215 (64%), Gaps = 3/215 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E++S EGLR DGRR E+R++ A +G ADGSA F+ G+TKV+A V GP++ K+
Sbjct: 3 EYISVEGLREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKA-- 60
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D V C++ MA FST R + + DR++ E+ I T E+ I+T L PRSQI+I V
Sbjct: 61 -GDAGKVVCDFEMAAFSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISV 119
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
QVLQADGG + INA TLAL DAG+ M D V +C+A ++ T +LD+N+ E SA GP++
Sbjct: 120 QVLQADGGVLAVAINAVTLALMDAGVAMTDFVCACTASVIDGTNVLDINHYEASAQGPEL 179
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
T+ +LP+ + + +M +++ + + + LAI G
Sbjct: 180 TIAVLPSSSTIVMAEMKSRVHGDLYAGLQDLAIVG 214
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 156/241 (64%), Gaps = 13/241 (5%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E+ +G R+DGR+ E+R+ E+G + +ADGSA+ E+GNT+VIA+V+GP+++ K
Sbjct: 6 IEWFDDDGNRVDGRKADELRETEMEVGVLEEADGSAMVEIGNTRVIASVFGPQDLHPKHL 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q SD+A+++ Y+MA FS DRM P +RR+ EI LV + ++ + P + IDI
Sbjct: 66 QESDRAVIKMRYNMAPFSVDDRM-SPGPNRRAQEIELVAKNALKPALELERFPTAGIDIS 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++V+++DGGTR I AA+LAL DAGIPM+ +V++C+AG ++ TP+LD+N ED G D
Sbjct: 125 MEVVESDGGTRVTGITAASLALADAGIPMKGMVSACAAGVVDDTPVLDVNGKEDKKGNAD 184
Query: 181 VTVGIL---------PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
+ + + D+VTLLQMD L T ++ ++LA +GC+ + R+ R+ +
Sbjct: 185 IPIATINRTDDDTESTEDDRVTLLQMDGDLTTEQVDECVELAKKGCEKL---YRQQRRTI 241
Query: 232 L 232
L
Sbjct: 242 L 242
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 6/236 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGR+ E+R ++ E + +ADGS EMG KVIAAV+GPREV + Q +A
Sbjct: 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R R P DRRS EIS V ++ EA I+ L PRS IDIFV+VLQA
Sbjct: 74 IIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R+AC+NAA++AL DAG+PM+ ++TS + G + +LD ED+ G D+ L
Sbjct: 133 DAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFL 192
Query: 187 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKFLLIAVDI 237
++ + LLQMD ++ + + ++LA +G + RE +R+++ + ++
Sbjct: 193 IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEM 248
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 147/221 (66%), Gaps = 1/221 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR P ++R L ++G + ADGSA +G T+V+AAVYGPRE + + D+A
Sbjct: 12 DGKRHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRA 71
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++RC Y MA FST +R + P RR E+S VIR+ +EA ILTHL PR+ ID+F++V++A
Sbjct: 72 VIRCRYHMAPFSTDER-KNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRA 130
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+A + AA+LAL DAGIPM+ +V + G + T +LD++ +ED G D+ V +
Sbjct: 131 DGGTRTAALTAASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDELEDMYGEADMPVAAI 190
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
P+L+K+ LLQ++ L F ++LA EG K + ++V
Sbjct: 191 PSLNKIVLLQLNGVLEPREFPQALKLAWEGIKKIHAMQKKV 231
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 149/227 (65%), Gaps = 1/227 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
MEF+ +G RLDGR+ E+R+ E+ + A+GSA E GNT+V+A+V+GP+E+ K
Sbjct: 6 MEFIDEDGNRLDGRKRDELRETSMEVDVLENAEGSARVETGNTRVVASVFGPQELHPKHL 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A+++ Y+MA FS DRMR P +RR+ EI LV ++ + + H P + IDI
Sbjct: 66 QEPDRAVIKMRYNMAPFSVDDRMR-PGPNRRAKEIGLVSKKALAPAVDLHEFPNAGIDIS 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++++++DGGTR INAA+LAL DAGIPM +V++C+AG ++ T +LD++ ED G D
Sbjct: 125 MEIIESDGGTRVTGINAASLALADAGIPMEGLVSACAAGVVDDTVVLDVDGPEDKHGNAD 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ + + ++VTLLQMD +P T E+ +QLA GC+ + RE
Sbjct: 185 IPIATVNGGEEVTLLQMDGDIPPGTVEEAVQLAETGCENLHRMQREA 231
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R DGR+P ++R L ++G ++ADGSA E GNTKV+ AVYGP E + +S+
Sbjct: 1 MSIISEHGFRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+ ++ C+YSMA FST +R +P+GDRRS E + ++ + EA ILT PRSQID+F
Sbjct: 61 LLEDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAILTENYPRSQIDVF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVT----SCSAGYLNSTPLLDLNYVEDSA 176
++LQADG +AC+N TLAL DAG+PMR +V +C+ G L +D+N E+
Sbjct: 121 CELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGGL---ACVDVNSREEMG 177
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTF 206
P +TV + D V L ++ +L N
Sbjct: 178 IVPRLTVATISGQDAVVLAELQNRLHKNHL 207
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 135/212 (63%), Gaps = 6/212 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE--VQNK 58
ME +S EG R DGRR E R+++ +G ADGSA+ + GNTKV+AAV+GPR+
Sbjct: 1 MELLSDEGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQH 60
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
++ +V EYS A F++ +R R+ +GD+++ EISL +++T EA ILT L PRS I
Sbjct: 61 GAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAIS 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDLNYVED 174
IFV+VLQADGG + C+NAATLAL DAGIP+RD+ + S G + LLDL Y E+
Sbjct: 121 IFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEE 180
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF 206
SA P + +P ++ +++++L + F
Sbjct: 181 SARIPTIVATGMPKTGEMVFFEVESRLHMDYF 212
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 143/226 (63%), Gaps = 2/226 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ +GLRLDGR EMR +R G V ADGSA E G K++ AVY RE K
Sbjct: 4 VKLINDDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVY-VREAYPKHA 62
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A+V+ Y+MA FS +R ++P DRR+ EIS +I + +E+ I+ +PR++ID++
Sbjct: 63 QNIDKAIVKARYNMAGFSVEER-KRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVY 121
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VL+AD GTR A + AA++A+ DAGIPM+D+ C+AG N +LDL+ ED+ G D
Sbjct: 122 IEVLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDNYGDAD 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ + ILP K+ LLQ+D + E+ M++ + K ++ RE
Sbjct: 182 IPMAILPKSGKIILLQLDGDVSEQELEEAMEMMLGAMKNISRIQRE 227
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R+DGR P E R + ++G + A+GSA+ GNT V+AAVYGPRE + + D+A
Sbjct: 12 DGKRVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKA 71
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+VR Y MA FST DR + P RR EIS V++Q +E + P+S ID+F++VLQA
Sbjct: 72 VVRVRYHMAPFSTDDR-KNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQA 130
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DG TR I AA+LAL DAGIPMRD+V S G +N T ++DLN +ED+ G D+ + I
Sbjct: 131 DGSTRVTSITAASLALADAGIPMRDLVVGVSVGKINDTVIVDLNKLEDNYGDGDLPIAIA 190
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
+ V L+Q+D + + ++LA + + + +REV K +AV
Sbjct: 191 YRKNWVLLMQLDGVWKPSEVKRGLELAFKAAENIYRNMREVLKGRYMAV 239
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 150/248 (60%), Gaps = 25/248 (10%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR+DGRR E+RQ+R +G +ADGSA E GNTKV+AAVYGP + +N + + +A+
Sbjct: 12 GLRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAI 71
Query: 68 VRCEYSMA--NFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
V C+YSMA +F++G+R R+P+GD +S E S+ +R MEA I L PRSQIDIFV++LQ
Sbjct: 72 VNCQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVEILQ 131
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------------LLDLNYVE 173
DG A +NAATLAL DAGIP+++ C+ +N TP +LD N+VE
Sbjct: 132 VDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALIN-TPSTDEQDKTLAGGVLDANFVE 190
Query: 174 DSAGGPDVTVGILPTLDKVTLLQ---------MDAKLPTNTFEDVMQLAIEGCKAVANYI 224
+ + G ++V LP +V + +L + E + Q A++GCK + +
Sbjct: 191 EYSPGVTLSVVALPGTSEVESNENGLIVVAHGTGQRLHLSHLEALKQRALQGCKDIRTIM 250
Query: 225 -REVRKFL 231
+ VR+ L
Sbjct: 251 DQSVRQHL 258
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G RLDGRRP ++R + +G A+GS+ E GNTKV+ AVYGP E + S+
Sbjct: 1 MSIISEHGFRLDGRRPAQIRNVNTRLGLNRNAEGSSYLEHGNTKVLCAVYGPYEGK-ASK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STE+S ++ + E+ ILT PRSQIDIF
Sbjct: 60 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEMSRLLEKAFESVILTESFPRSQIDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G + P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVEGNPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM+ A C V
Sbjct: 180 VTLATICGRDEVVLVELHNRLHIDHLSVVMEAAKATCADV 219
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E + S+
Sbjct: 1 MSIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESK-ASK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STEIS ++ + E+ ILT PRSQIDIF
Sbjct: 60 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G + + P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADV 219
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 145/225 (64%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ +G R DGRR E+R + ++ ADGSA+ G T+V+ +V+GPRE + +SQ
Sbjct: 5 VEILNDDGYRSDGRRQFELRDITMDLSQRGTADGSAMITHGLTQVLVSVFGPREAKMRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A++ E ++A FSTG+R ++ +GD+R E + I+ T E + T+L PRSQIDI+
Sbjct: 65 TFHDRAVLNVEVNIAPFSTGERRKRNRGDKRILEFASAIKSTFEPVVQTNLYPRSQIDIY 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V VLQ DGG A INA TLAL AGIP+ D+V + + G +++P+LDL +E++ P
Sbjct: 125 VHVLQQDGGLLQAGINATTLALVSAGIPLLDLVCAVTGGVHSTSPMLDLTTLEEN-DIPH 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+TV I+P K+TL+ M+ +L + F D+ +LA E + + ++
Sbjct: 184 LTVAIMPKTGKITLVTMETRLHADRFADIFKLACEAGQVIHKEMK 228
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E + G R DGRR E+R + ++ N ADGS G T V+ +V+GP E + +SQ
Sbjct: 5 IEIFNDGGFRSDGRRQYELRDISIDLSNHGSADGSVTIRQGLTHVLVSVFGPHEARVRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A + E +++ FS G+R ++ + D+R E++ IR T E I THL PRSQID+F
Sbjct: 65 TLHDRANLNVEVNVSAFSAGERRKRSRADKRLLELAATIRSTFEPVIQTHLYPRSQIDVF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQV+Q DGG CIN TLAL AGIP+ D V + + G +S+P+LDL +E++ P+
Sbjct: 125 VQVIQQDGGLLQTCINGTTLALAHAGIPLFDFVCAVTGGVHSSSPMLDLTTLEEN-DIPN 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
TV I+P ++VTL+ M+ +L + FE++ LA++ + ++
Sbjct: 184 FTVAIMPKSNRVTLVAMETRLHIDRFEELFLLAVDAGNIIHKEMK 228
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R DGR P E R +R E+G + A+GSA+ GNT ++AAVYGPREV K ++ D+A+
Sbjct: 13 GKRSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAI 72
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST + + P RR EIS VIR +E ++ PR+ ID++++VLQAD
Sbjct: 73 LRVRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR I AA+LAL DAGIPMRD++ S G ++ T ++DLN +ED G D+ + I+
Sbjct: 133 GSTRVTGITAASLALADAGIPMRDLLVGVSIGKVSGTIVVDLNQLEDQYGEGDMPLAIMY 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+TL+Q D + + LA + + + +E K
Sbjct: 193 GRGLITLMQADGEWTPTEVNQALDLAFKAAEQIYRLEKETLK 234
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 145/234 (61%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E +L PRS+ID+F++++QAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ +LDLN +ED+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + LLQ+D F + LA++G + V R+ K++ IA +I G
Sbjct: 192 NLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALKNKYMSIAEEIYG 245
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 133/207 (64%), Gaps = 6/207 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE--VQNK 58
ME +S EG R DGRR E R+++ +G ADGSA+ + GNTKV+AAV+GPR+
Sbjct: 1 MELLSDEGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQH 60
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
++ +V EYS A F++ +R R+ +GD+++ EISL +++T EA ILT L PRS I
Sbjct: 61 GAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAIS 120
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDLNYVED 174
IFV+VLQADGG + C+NAATLAL DAGIP+RD+ + S G + LLDL Y E+
Sbjct: 121 IFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEE 180
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKL 201
SA P + +P ++ +++++L
Sbjct: 181 SARIPTIVATGMPKTGEMVFFEVESRL 207
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 149/250 (59%), Gaps = 28/250 (11%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR+DGRR E+RQ+R +G +ADGSA E GNTKV+AAVYGPR+ ++ + + S +A+
Sbjct: 11 GLRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAI 70
Query: 68 VRCEYSMA--NFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+ C+YSMA +F++G+R R+P+GD +S E S +R MEA I L PRSQID+FV+VLQ
Sbjct: 71 INCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVEVLQ 130
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-----------STPLLDLNYVED 174
DG A +NAATLAL DAGIP+++ CS +N +T +LD NYVE+
Sbjct: 131 VDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATGVLDANYVEE 190
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDA------------KLPTNTFEDVMQLAIEGCKAVAN 222
+ P VT+ ++ +++D +L + E + Q ++GC+ +
Sbjct: 191 CS--PGVTLSVVALAGTNNDIEVDGNGLIVVAHGAGQRLHLSCLETLKQRVLQGCQDIKT 248
Query: 223 YIRE-VRKFL 231
+ VR L
Sbjct: 249 ILDHGVRHHL 258
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 131/210 (62%), Gaps = 7/210 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R DGR+P ++R L ++G ++ADGSA E GNTKV+ AVYGP E + +S+
Sbjct: 1 MSIISEHGFRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+ ++ C+YSMA FST +R +P+GDRRS E + ++ + E ILT PRSQID+F
Sbjct: 61 LLEDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAILTENYPRSQIDVF 120
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVT----SCSAGYLNSTPLLDLNYVEDSA 176
++LQADG +AC+N TLAL DAG+PMR +V +C+ G L +D+N E+
Sbjct: 121 CELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGGL---ACVDVNSREEMG 177
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTF 206
P +TV + D V + ++ +L N
Sbjct: 178 IVPRLTVATISGQDAVVMAELQNRLHKNHL 207
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 146/232 (62%), Gaps = 4/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGRR E+R ++ +ADGSA+ G T+V+ V+GPRE ++ +Q
Sbjct: 25 VEILNDGGYRSDGRRQHELRDFNIDLAVRGQADGSAMVSQGLTQVLVTVFGPREARSPTQ 84
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ ++A + E ++A+FST +R ++ + D+R E + I+ T E I THL PRS+IDIF
Sbjct: 85 RIHNRAFINVEVNIASFSTSERRKRSRNDKRVLEFAAAIKSTFEPVIQTHLYPRSEIDIF 144
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVLQ DGG SA INA TLAL GI + D V + SAG + PLLDLN +E++ P
Sbjct: 145 VQVLQQDGGLLSASINATTLALITGGISLYDYVCAVSAGVHATHPLLDLNTLEEN-DVPH 203
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
+T ++P KVTL+ ++ +L + FE++ +LA C A +E+R+ +L
Sbjct: 204 LTTAVMPRTRKVTLVTLETRLHADRFEEIFRLA---CDAGEVVHKEMRRAIL 252
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 142/225 (63%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGRR E+R++ + ADGSA+ G T+V+ +V+GPRE + +SQ
Sbjct: 5 VEILNDGGYRSDGRRQFELREVTINLAQQGHADGSAIITHGLTQVLVSVFGPREAKMRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A + + ++A FS G+R ++ +GD+R EI+ ++ T E + T L PRSQID++
Sbjct: 65 TIHDRANINVDVNVAAFSAGERRKRSRGDKRILEIASTLKSTFEPVVQTTLYPRSQIDVY 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V VLQ DGG CIN TLAL +AGIPM D V + + G +++PLLDL +E++ P
Sbjct: 125 VTVLQQDGGLLQTCINGTTLALINAGIPMLDFVCAVTGGVHSTSPLLDLTTLEEN-DVPH 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
VTV I+P KV L+ M+ +L + FE++ +LA E K + ++
Sbjct: 184 VTVAIMPKTGKVALVTMETRLHVDRFEEIFRLAGEAGKVLHREMK 228
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 140/227 (61%), Gaps = 2/227 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR P ++R +R ++G + ADGSA+ E G T+V+AAVYGPRE + + D+A
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y MA FST +R + P RR E+S V+R+ +E +L PR+ ID+F++VLQA
Sbjct: 74 ALRVRYHMAPFSTDER-KSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+A + AA+LAL DAGIPMR +V + G + ++D++ +ED G D+ V
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLL 232
P + ++TLLQ++ L F + +A+ V +E +RK L
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYL 239
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 134/220 (60%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P E R +R E+G ++ A+GSA+ GNT ++AAVYGPREV K ++ D+A++R
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
Y M FST + + P RR EIS VIR +E ++ PR+ ID++++VLQADG
Sbjct: 75 VRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADGS 134
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
TR I AA+LAL DAGIPMRD++ S G ++ T ++DLN +ED G D+ + I+
Sbjct: 135 TRVTGITAASLALADAGIPMRDLLVGVSVGKVSGTIIVDLNQLEDQYGEGDMPLAIMYGR 194
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+TL+Q D + ++LA + + + ++V K
Sbjct: 195 GLITLMQADGEWTPTEVNQAVELAFKAAEQIYRLQKDVLK 234
>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
gi|259645399|sp|A0RXU1.1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
Length = 243
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ +E R++ G + A+GSA E G+ K++A ++GPR+V K ++ +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y M+ FS +R +KP RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRCRYHMSPFSVSER-KKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG+R A + AA++AL DAGIPMRD+V++C+AG + T +LD+N ED AG D+ VG +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
LD+VTL+Q+D L + + +AI+GCK V
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQV 226
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADV 219
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + + +DGS+ E GNTKVI V GP E +++
Sbjct: 4 MELYSPEGLRIDGRRWNELRRFECRINTHPSSSDGSSYVEQGNTKVICTVQGPIEPSSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q D+A + ++ANFST +R ++ K ++R E+ + +T E IL HL PR+ I I
Sbjct: 64 QMNQDKANLEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSILLHLYPRTNITI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG +A N+ TLA+ DAGI M D V+S S G + +PLLDLN +E++
Sbjct: 124 NVQVLSQDGGMLAAITNSITLAIIDAGIAMYDYVSSVSCGLFDQSPLLDLNNLEET-DVS 182
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR-EVRKF 230
+TVG++ +K+ LL ++ K+P ++ E V+ + I G + + + EVRK
Sbjct: 183 SITVGVIGKSEKLALLLLEDKMPLDSLEKVLSIGIAGSHRIKDLMDIEVRKH 234
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 144/220 (65%), Gaps = 3/220 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E SPEGLR DGRR E+R +I + ADGS+ E G+TKV+ V GPRE N+ Q
Sbjct: 51 EIYSPEGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNR-Q 109
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+A++ ++A+FST R+++ + D+R E++++IRQ +E +LT L PR+QI +
Sbjct: 110 NTTDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVN 169
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ V+ DGG ACINAA LA+ DAG+P+ D V++CS+G ++ L+DLN +E+ P
Sbjct: 170 ITVIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNALIDLNTLEEQ-DVPF 228
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+T+G++ DK+++L ++ +LP + E V+ ++ G A+
Sbjct: 229 LTIGVIGKSDKISMLTLETQLPMASLEPVLATSLSGAHAI 268
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 148/227 (65%), Gaps = 5/227 (2%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
++ EG+R DGR P EMR ++ +G + KADGSA E G +++AAV+GPREV K +
Sbjct: 12 LITEEGIRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVL 71
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+AL+R Y+MA FST +R R+P DRRS E+S VIR+ ++ I P S IDIFV+
Sbjct: 72 PDRALIRARYNMAPFSTPER-RRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVE 130
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VL++D GTR A INAA+LAL AG+ MR +V++CS G + S ++D N+ ED G D+
Sbjct: 131 VLRSDAGTRVAGINAASLALASAGVAMRGLVSACSVGRVGSFIVVDPNHDEDMWGDSDMP 190
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ ++ +++TLLQ D L F++ + L G +A+ ++ EV+K
Sbjct: 191 LAMMMESEEITLLQADGTLSEEEFKEALDL---GRRAI-RFVYEVQK 233
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 146/248 (58%), Gaps = 24/248 (9%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSD 64
GLRLDGRR E+RQ+R ++G +ADGSA E GNTK++ VYGP + +N +S
Sbjct: 28 GLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKIT 87
Query: 65 QALVRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ +V C+YSMA FS +G+R RKP+GDR+S E SL ++ MEA I L PRSQIDI+V+
Sbjct: 88 KGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVE 147
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-----------LDLNY 171
LQ DG A +NAATLAL DAGIP+++ C+ +N L LD NY
Sbjct: 148 ALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKGVLDANY 207
Query: 172 VEDSAGGPDVTVGILPTLDKVT-----LLQMDA--KLPTNTFEDVMQLAIEGCKAVANYI 224
VE+ A G ++V LP D ++ ++ A +L + FE + + GC+ + +
Sbjct: 208 VEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCGCQDIKTIL 267
Query: 225 -REVRKFL 231
VR++L
Sbjct: 268 DHAVRQYL 275
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ + + +DGS+ E GNTKVI V GP E +++
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECRVNTHPNSSDGSSYVEQGNTKVICTVQGPTEPISRA 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q D+A + ++ANFST +R ++ K ++R E+ + +T E +L HL PR+ I I
Sbjct: 61 QMNQDKANLEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSVLLHLYPRTNITI 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG +A NA TLA+ DAGI M D V+S S G ++ +PLLDLN +E+S
Sbjct: 121 NVQVLSQDGGMLAAITNAITLAIIDAGIAMYDYVSSVSCGLIDQSPLLDLNNLEESDVSA 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR-EVRKF 230
+TVG++ +K+ LL ++ K+P ++ E V+ + I G + + + EVRK
Sbjct: 181 -ITVGVIGKGEKLALLLLEDKMPLDSLEKVLSIGIAGSHRIKDLMDMEVRKH 231
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 121/189 (64%), Gaps = 1/189 (0%)
Query: 32 ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRR 91
ADGSA E G K+IAAVYGP E K Q +D+A+VR YSMA FS +R ++P DRR
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDER-KRPGPDRR 59
Query: 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRD 151
+ E+S VI + +E+ I PR+ ID++++VLQAD GTR A I A+LAL DAGIPMRD
Sbjct: 60 AIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRD 119
Query: 152 IVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQ 211
++ C+AG ++ +LDLN ED+ G DV + I+P ++ LLQMD + M
Sbjct: 120 LIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIALLQMDGDMSYEELTTAMD 179
Query: 212 LAIEGCKAV 220
+A++ + +
Sbjct: 180 MAMDAAEKI 188
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 144/248 (58%), Gaps = 24/248 (9%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSD 64
GLRLDGRR E+RQ+R ++G +ADGSA E GNTK++ VYGP + +N +S
Sbjct: 12 GLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKVT 71
Query: 65 QALVRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ +V C+YSMA FS +G+R RKP+GDR+S E SL ++ MEA I L PRSQIDI+V+
Sbjct: 72 KGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVE 131
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-----------LDLNY 171
LQ DG A +NAATLAL DAGIP+++ C+ +N L LD NY
Sbjct: 132 ALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLERGVLDANY 191
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQM-------DAKLPTNTFEDVMQLAIEGCKAVANYI 224
VE+ A G ++V LP D ++ + +L + FE + + GC+ + +
Sbjct: 192 VEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCGCQDIKTIL 251
Query: 225 -REVRKFL 231
VR++L
Sbjct: 252 DHAVRQYL 259
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 137/223 (61%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E LR DGR E+R ++ E G + +ADGSA E+G K++A+VYGPRE + +
Sbjct: 9 EKLRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTG 68
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS DR R P DRRSTEIS + + ++ PRS +D+ ++V++A
Sbjct: 69 VIRVRYNMAPFSVDDRKR-PGPDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVIEA 127
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
+GGTR A I AA +AL DAGIPM+DIV C+AG +N +LDL+ ED G DV + I+
Sbjct: 128 EGGTRCAGITAAAVALADAGIPMKDIVVGCAAGKVNDEIVLDLSEKEDKEGQADVPIAIM 187
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P ++TLLQ D L FE+ + LAIEGC ++ E K
Sbjct: 188 PRTGEITLLQADGNLTEEEFEEALDLAIEGCMKISEIQHEALK 230
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 131/200 (65%), Gaps = 4/200 (2%)
Query: 22 LRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81
++ E+G +++ADGS E G K++ V+GPRE + Q +D A++R Y+MA+FS D
Sbjct: 1 MKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVED 60
Query: 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLA 141
R R P RRS EIS V R+ E I+ L P++ IDIFV+VLQAD GTR+A INA+++A
Sbjct: 61 RAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIA 119
Query: 142 LQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLD-KVTLLQMDAK 200
L DAGIPM+ ++TSC+ G ++ +LDLN ED+ G D V + T D ++TL+QMD
Sbjct: 120 LADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVAM--TQDGEITLIQMDGN 177
Query: 201 LPTNTFEDVMQLAIEGCKAV 220
L + + ++L +GCK +
Sbjct: 178 LTPDEIKQGLELVKKGCKEI 197
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 141/225 (62%), Gaps = 2/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + +GLRLDGR EMR ++ + G V +ADGSA E G K+I AVY RE K
Sbjct: 5 IKLMREDGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVY-VREAYPKHA 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A+V+ Y+M+ +S +R ++P DRR+ EIS V+ + + + I+ +PR++ID+F
Sbjct: 64 QNIDRAIVKARYNMSGYSVEER-KRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVF 122
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+QVL+AD GTR A + A+++A+ DAG+PMRD+V C+AG + +LDL+ ED+ G D
Sbjct: 123 IQVLEADAGTRIASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQAD 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+ + ILP KV LLQ+D + F + + ++ ++ R
Sbjct: 183 IPMAILPRTGKVVLLQLDGDVTEEEFNEATSMMMDAMPRISELQR 227
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 142/232 (61%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + +DGS+ E GNTKVI V GP E +++
Sbjct: 4 MELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q D+A V ++ANFST +R ++ K ++R E+ + +T E IL HL PR+ I I
Sbjct: 64 QMNQDRANVEVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQLILLHLYPRTNITI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG +A N+ TLAL DAGI M D V+S S G + +PLLDLN +E++
Sbjct: 124 NVQVLNQDGGMLAAVTNSITLALMDAGIAMYDYVSSISCGLHDQSPLLDLNNLEENDMSC 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K+ LL ++ K+P + E V+ +AI G + + + EVR+
Sbjct: 184 -LTIGVIGKSEKLALLMLEDKMPLDNLEKVLGIAIAGSHRIKDLMDMEVRRH 234
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 149/232 (64%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR+DGRR E+R+ I + ADGS+ E GNTKVI V GP+E NKS
Sbjct: 4 LELYSPEGLRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S A++ S+A+FST +R ++ K ++R+ E++ + +T E I+ L PR+ I +
Sbjct: 64 QQNSSGAVIEFNVSIASFSTTNRKKRSKNEKRTIELNTTLERTFEQSIIRKLYPRTTISV 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL DGG +A NA+TLAL DAGI M D ++ SAG + +PLLDLN +E+S G
Sbjct: 124 NLHVLAQDGGLLAALTNASTLALIDAGISMYDYISGISAGLHDISPLLDLNTLEES-GMS 182
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K++LL ++ K+P + ED++ +AI G + + + +EVR+
Sbjct: 183 FLTIGVVGNSEKLSLLLLEDKIPLDNLEDLLAIAIAGSHRIRDLMDQEVRRH 234
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 141/240 (58%), Gaps = 24/240 (10%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S GLR DGRR E+RQ+R +G +ADGSA E GNTKV+AAVYGP + ++ + S
Sbjct: 9 SQGGLRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNST 68
Query: 65 QALVRCEYSMA--NFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+A V C+YSMA +F++G+R R+P+GD +S E S +R MEA I L PRSQIDIFV+
Sbjct: 69 KAFVNCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVE 128
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN------------STPLLDLN 170
VLQ DG A +NA+TLAL DAGIP+++ C+ +N +T +LD N
Sbjct: 129 VLQVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINKLTTEEEEDKTLATGVLDAN 188
Query: 171 YVEDSAGGPDVTVGILPTLDK----------VTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+VE+ + G ++V LP + V +L + E + + A++GC+ +
Sbjct: 189 FVEECSPGVTLSVVALPETNNEVEVDGSGLIVVAHGAGQRLHLSRLEALKKRALQGCQDI 248
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S EGLR DGRR EMR + IG +GSA E+GNTKV+ V GP E KS+
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI ++
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLDLN +E+SA
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW- 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+TV +L + KV +Q++ + + E VM +AI G + + N ++
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQ 227
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 143/248 (57%), Gaps = 24/248 (9%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP---REVQNKSQQMSD 64
GLR DGRR E+RQ+R ++G +ADGSA E GNTK++ VYGP R +S
Sbjct: 12 GLRPDGRRALELRQIRIKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRSTSKVT 71
Query: 65 QALVRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ +V C+YSMA FS +G+R RKP+GDR+S E SL ++ MEA I L PRSQIDI+V+
Sbjct: 72 KGIVNCQYSMAVFSLSSGERKRKPRGDRKSQEKSLQLKHAMEAIIHLELYPRSQIDIYVE 131
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-----------LDLNY 171
VLQ DG A INA+TLAL DAGIP+++ C+ +NS+ L LD NY
Sbjct: 132 VLQVDGSEYCASINASTLALIDAGIPIKNYAVGCTVTLINSSSLDNEDSSLGTGVLDANY 191
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQM-------DAKLPTNTFEDVMQLAIEGCKAVANYI 224
+E+ G ++V LP D ++ + +L + FE + + GC+ + +
Sbjct: 192 IEECNRGVTLSVIALPNSDGISKDGLIVVAEGAGQRLHLSHFESLKDRVLHGCQDIKVIL 251
Query: 225 RE-VRKFL 231
+ VR +L
Sbjct: 252 DQAVRHYL 259
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 146/232 (62%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + +DGS+ E GNTKV+ V GP E Q +S
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S+ A + ++ANF+T +R ++ K ++R E+ ++ +T I+ +L PR+ I I
Sbjct: 61 QQHSEHANIEINLTIANFATFERKKRNKNEKRLIELKNILEKTFMESIMINLYPRTNIII 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+QVL DGG SA N+ TLAL D+GI M D V+S + G ++TPLLDLN +E++
Sbjct: 121 NIQVLSQDGGLLSAITNSITLALIDSGISMYDYVSSINCGLYDTTPLLDLNNLEENDIS- 179
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
++T+G++ +K+ LL + K+P + E+V+ LAI G + + + +EVRK
Sbjct: 180 NLTIGVIGKSEKLALLLSEDKMPLDRLENVLSLAIAGSHRIRDLMDQEVRKH 231
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 142/245 (57%), Gaps = 21/245 (8%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGRR E+RQ+R ++G +ADGSA E GNTK++ VYGP + + + + + + +
Sbjct: 12 GLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGI 71
Query: 68 VRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
V C+YSMA FS +G+R RKP+GDR+S E SL ++ MEA I + PRSQIDI+V+ LQ
Sbjct: 72 VNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQ 131
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP-----------LLDLNYVED 174
DG A +NAATLAL DAGIP+++ C+ +N+ +LD NY+E+
Sbjct: 132 VDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
Query: 175 SAGGPDVTVGILPTLDK-------VTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-RE 226
A G ++V LP D V +L + FE + + GC+ + +
Sbjct: 192 CAPGVTLSVVALPNSDSKSKDGLIVVAQGAGQRLHLSQFESLKARVLYGCQDIKTILDHA 251
Query: 227 VRKFL 231
VR++L
Sbjct: 252 VRQYL 256
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 138/236 (58%), Gaps = 17/236 (7%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E + S+
Sbjct: 117 MSIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGK-ASK 175
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STEIS ++ + E+ ILT PRSQIDIF
Sbjct: 176 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIF 235
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G +++ P++DL E++ P
Sbjct: 236 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVDAKPIVDLTSREETDLLPR 295
Query: 181 VTVGILPTL----------------DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VTV ++ D+V L+++ +L + VM A C V
Sbjct: 296 VTVSGFSSIILLLHSKFQLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADV 351
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E +S EGLR DGRR EMR + G +GSA E+GNTKV+ V GP E KS+
Sbjct: 4 LEILSLEGLRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI ++
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLDLN +E+SA
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW- 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+TV +L + KV +Q++ + + E VM +AI G + + N ++
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQ 227
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 148/232 (63%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR+DGRR E+R+ I + ADGS+ E GNTKVI V GP+E NKS
Sbjct: 4 LELYSPEGLRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S A+V S+A+FST +R ++ K ++R E++ + +T E I+ L PR+ I +
Sbjct: 64 QQNSSGAVVEFNVSIASFSTTNRKKRSKNEKRIIELNTTLERTFEQSIIRKLYPRTTISV 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL DGG +A NA+TLAL DAGI M D ++ SAG + +PLLDLN +E++ G
Sbjct: 124 NLHVLAQDGGLLAALTNASTLALIDAGISMYDYISGISAGLHDVSPLLDLNTLEEN-GMS 182
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K++LL ++ K+P + ED++ +AI G + + + +EVR+
Sbjct: 183 FLTIGVVGNSEKLSLLLLEDKIPLDNLEDLLAIAIAGAHRIRDLMDQEVRRH 234
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 141/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ +I + ADGS+ E GNTK+I V GP E KS
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECKINTHPHSADGSSYVEQGNTKIICMVRGPMEPAMKS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q + + V S+ANFST +R ++ K D+R TE+ + +T CI+ HL PR+ I +
Sbjct: 61 QVNATSSTVEVNVSLANFSTFERKKRSKTDKRITELKTTLERTFNECIMGHLYPRTLISV 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG-YLNSTPLLDLNYVEDSAGG 178
VQVL DGG +A NA TLAL DAGI M D V+ +AG Y ++ LLDLN +E++
Sbjct: 121 TVQVLAQDGGLLAAMTNAVTLALIDAGIAMYDYVSGVNAGLYDQTSALLDLNTLEEN-DM 179
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K+ L+ ++ KLP + E V+ +AI G + + EVRK
Sbjct: 180 CSLTIGVIGKSEKLALVVLEDKLPLDRLESVLAIAIAGSHRIRELMDMEVRKH 232
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 141/213 (66%), Gaps = 1/213 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGRR E+R + ++ ADGSA+ G T+V+A V+GPRE + +SQ
Sbjct: 19 VEILNDGGYRSDGRRQYELRDITIDLSQQGTADGSALMTHGLTQVLATVFGPREARVRSQ 78
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A++ E +++ FSTG+R R+ + DRR E++ I+ T E + T+L PRSQIDIF
Sbjct: 79 TLHDRAVINVEVNVSPFSTGERRRRGRADRRVLELAATIKSTFEPVVQTNLYPRSQIDIF 138
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ VLQ DGG ACINA TLAL AGIP+ D V + S G +++P+LDL +E++ P+
Sbjct: 139 LHVLQQDGGLLHACINATTLALVTAGIPLLDFVCAVSGGVHSTSPMLDLTTLEEN-DLPN 197
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+TV I+P KVTL+ +D +L + F ++ +LA
Sbjct: 198 LTVAIMPKTKKVTLVTLDTRLHVDRFAEIFELA 230
>gi|340344304|ref|ZP_08667436.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519445|gb|EGP93168.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 244
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 141/219 (64%), Gaps = 1/219 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ E R++ + G + ADGSA E G+ K++ V+GPR+V K +D +
Sbjct: 15 GIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FS +R + P RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRVRYHMEPFSVTER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GGTR A ++AA++AL DAGIPMRD+V +C+AG T +LD+N ED AG D+ +G +P
Sbjct: 134 GGTRCAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+L+K+TLLQ+D L ++ ++ I+GCK V R+
Sbjct: 194 SLEKITLLQLDGVLTPEEYKKCVETGIKGCKIVYELQRK 232
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 21/245 (8%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGRR E+RQ+R ++G +ADGSA E GNTK++ VYGP + + + + + + +
Sbjct: 12 GLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGI 71
Query: 68 VRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
V C+YSMA FS +G+R R+P+GDR+S E SL ++ MEA I + PRSQIDI+V+ LQ
Sbjct: 72 VNCQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQ 131
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP-----------LLDLNYVED 174
DG +NAATLAL DAGIP+++ C+ +N+ +LD NY+E+
Sbjct: 132 VDGSEYCTSVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
Query: 175 SAGGPDVTVGILPTLDK-------VTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-RE 226
A G +++ LP D V +L + FE + + GC+ + +
Sbjct: 192 CAPGVTLSIVALPNSDSKSKDGLIVVAQGAGQRLHLSQFESLKARVLYGCQDIKTILDHA 251
Query: 227 VRKFL 231
VR++L
Sbjct: 252 VRQYL 256
>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796026|ref|ZP_10379390.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 245
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 138/213 (64%), Gaps = 1/213 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ E R++ + G + ADGSA E G+ K++ V+GPR+V K +D +
Sbjct: 15 GIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FS +R + P RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRVRYHMEPFSVTER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GGTR A ++AA++AL DAGIPMRD+V +C+AG T +LD+N ED AG D+ +G +P
Sbjct: 134 GGTRCAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+L+K+TLLQ+D L ++ ++ I GCK V
Sbjct: 194 SLEKITLLQLDGVLTPAEYKKCVETGIHGCKIV 226
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 142/232 (61%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R I + +DGS+ E GNTKVI V GP E +S
Sbjct: 1 MELYSPEGLRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q S++A + S+ANFST +R ++ K ++R ++ + +T + ++ +L PR+ I I
Sbjct: 61 QANSNEATLEVNLSVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRI 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL DGG +AC NA TLAL DAG+ M D V + +AG + TPLLD+N +E++
Sbjct: 121 DLHVLSQDGGMLAACTNAMTLALIDAGVSMYDYVAAMTAGLHDQTPLLDMNGLEENDMST 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K++LL ++ K+P + E V+ +AI G + + + EVR+
Sbjct: 181 -LTIGVIGKSEKLSLLMLEDKIPLDRLESVLAIAIAGSHKIRDLMDSEVRRH 231
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 144/232 (62%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ +I A ADGS+ E GNTKV+ V+GP+E +S
Sbjct: 4 MELYSPEGLRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q ++A + ++A+FST +R ++ + ++R E+ + +T E IL HL PR+ I++
Sbjct: 64 QSNQNRATIEINLNVASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLIEV 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG ++ NA TLAL DAGI M D V++ + + TPLLDLN +E++
Sbjct: 124 HVQVLAQDGGMLASITNAITLALVDAGIAMYDYVSAVNVALHDQTPLLDLNTLEENDMSC 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K+ +L ++ K+P + E V+ +AI G + + + EVR+
Sbjct: 184 -LTIGVVGKSEKLAMLLLEDKMPLDRLEAVLGIAIAGGHRIRDLMDEEVRRH 234
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 141/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR+DGRR E+R+L I A A DGS+ E GN KVI V GP+E + +S
Sbjct: 4 LEIYSPEGLRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +A + ++ FS +R + K +RR E+ + +T E ++ HL PR+QI+
Sbjct: 64 QMNVTKATISVALNITRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIE 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VLQ DGG S+ IN TLAL DAGI M D ++ S G ++TPLLDLN VE++A
Sbjct: 124 IQIHVLQQDGGLMSSLINGITLALIDAGIAMYDYISGVSIGLYDTTPLLDLNSVEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E V+ + I G + + +E+RK
Sbjct: 184 -SVTLGVVGKSEKLSLLLVEDKIPLDRMESVLAIGIAGSHRIRELMDKELRKH 235
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 143/235 (60%), Gaps = 3/235 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + +DGS+ E GNTKV+ V GP E +S
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S++A + ++A+FST +R ++ + +RR E+ + +T E ++ +L PR+ I I
Sbjct: 61 QQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG +A IN+ TLAL DAGI M D V+ S G + TPLLD+N +E+
Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEHDMSC 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLI 233
+TVG++ +K+ L+ ++ K+P + E V+ + I G + + +EVRK +I
Sbjct: 181 -LTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 143/235 (60%), Gaps = 3/235 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + +DGS+ E GNTKV+ V GP E +S
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S++A + ++A+FST +R ++ + +RR E+ + +T E ++ +L PR+ I I
Sbjct: 61 QQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG +A IN+ TLAL DAGI M D V+ S G + TPLLD+N +E+
Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGVYDQTPLLDVNNLEEHDMSC 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLI 233
+TVG++ +K+ L+ ++ K+P + E V+ + I G + + +EVRK +I
Sbjct: 181 -LTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 137/227 (60%), Gaps = 2/227 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR+DGRR E+R+ +I + +DGS+ E GN+K+I V GP E + +S
Sbjct: 4 LELYSPEGLRVDGRRWNELRRFECKINTHPNSSDGSSYVEQGNSKIICMVQGPMEPKLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q ++A + S+A+FST R ++ K ++R E+ I T E I++HL PR+ I I
Sbjct: 64 QMDVNKANIEVSISIAHFSTFHRKKRSKNEKRIVELKTAIENTFENSIISHLYPRTFIQI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+QVL DGG + NAATLAL DAGI M D V+ SAG + PLLDLN +E++
Sbjct: 124 NIQVLAQDGGLLAGMANAATLALIDAGIAMYDYVSCVSAGLYDQYPLLDLNTLEENDMSY 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+T+G++ +K+ LL ++ K+P + E V+ LAI G V + E
Sbjct: 184 -LTIGVIGKSEKLALLMLENKMPLDKLEPVLGLAIAGGHRVRELMDE 229
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 137/235 (58%), Gaps = 12/235 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ 65
EGLR DGRR E+R++ ++ + ADGS+ E G TKV+ V GP E ++ + D
Sbjct: 2 EGLRNDGRRWNELRRIHCQLSTSSTNADGSSYIEQGFTKVLCNVTGPAEPSSRQKVKQDA 61
Query: 66 ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
A V CE A FS DR+++ + D++ E+ I++T + ILTHL RS+I I + +L
Sbjct: 62 ATVTCEVYFAAFSGTDRIKRGRNDKKVQELQTAIQKTFASVILTHLFSRSEITISIHILS 121
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST---------PLLDLNYVEDSA 176
DGGT +ACINA TLAL DAGIP++D V +C++G S P LD+NY+E+S
Sbjct: 122 QDGGTLAACINATTLALIDAGIPLKDYVCACTSGQSTSIFDNEGSTPDPWLDVNYLEES- 180
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
P +TV + +K+ L M+ K+ E ++ + I GC V + EVR++
Sbjct: 181 DIPSLTVATVGETEKIVALSMENKVRIEMLEGMIAVGISGCAKVKGIMDAEVRRY 235
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 142/235 (60%), Gaps = 3/235 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + +DGS+ E GNTKV+ V GP E +S
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S++A + ++A+FST +R ++ + +RR E+ + +T E ++ +L PR+ I I
Sbjct: 61 QQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG + IN+ TLAL DAGI M D V+ S G + TPLLD+N +E+
Sbjct: 121 NVQVLCQDGGMLATIINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEHDMSC 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLI 233
+T+G++ +K+ LL ++ K+P + E V+ + I G + + +EVRK +I
Sbjct: 181 -LTIGVIGKSEKLALLLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 133/235 (56%), Gaps = 5/235 (2%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E +S EGLR DGRR EMR+ IG A GS+ + GNT+V+ V GP E K +
Sbjct: 6 EVISAEGLRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKS 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++A + E + A FS DR ++ + D+R E + I++T E I L P+SQI I +
Sbjct: 66 KQEKAFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISL 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
VL+ DGG + CINAATLAL DAGI M D V +AG + LLDLN E+S +
Sbjct: 126 NVLEDDGGAIATCINAATLALIDAGIAMVDYVCCATAGIYETQVLLDLNTNEESDISW-M 184
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA----NYIREVRKFLL 232
TVG+L T KVT L+ + KL + FE + AI GC +A +R+ K LL
Sbjct: 185 TVGVLGTKGKVTYLKQETKLSLDLFEPALTTAIAGCDHIALQMQKVVRQSAKTLL 239
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 5/224 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E +S EG R+DGRR E+R A++ ADGS+ E GNTKVI V+GP E KS+
Sbjct: 3 LEILSIEGFRIDGRRWNELRHFTAKVDIDNFADGSSYVEQGNTKVICMVHGPIEPNTKSK 62
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + + S+A FS+ +R ++ K D+R E I++ E I T L PRS+I+I
Sbjct: 63 VSLDRERITIDISIAAFSSVERKKRTKSDKRIQEYVACIQKVFEKAIQTGLHPRSEINIC 122
Query: 121 VQVLQADGGTRS----ACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
+QVL DGG + CINA +LAL +AGIPM D V++ + G ++ PLLDLN VE+++
Sbjct: 123 IQVLAQDGGMFNRILQTCINAVSLALINAGIPMYDYVSASTVGSTDTDPLLDLNAVEENS 182
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
TV IL + + LLQ + ++ FE ++ LA+ GC+ +
Sbjct: 183 ISW-YTVAILGKSEDIILLQTETRIHMEKFEHMLSLALHGCQQI 225
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 135/222 (60%), Gaps = 5/222 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME++SPEG RLDGRR TEMR+ EI ++ ADGSA MGNT V A V+GP E + +++
Sbjct: 1 MEYISPEGYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRNR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ ++ + YS A F+T R R+ DR E + +++Q E I+T L+P + ID+
Sbjct: 61 EGAE---LMVSYSQATFATRKR-REQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLR 116
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP- 179
VQV+Q DG +A INA TLAL DAGIPM DIV++ GY++ ++D+N E++ G
Sbjct: 117 VQVMQDDGSVTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENVGTVF 176
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
+V I+ V LLQ + K+P D++ + EG K +
Sbjct: 177 NVHTAIMQKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIG 218
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME++SPEG RLDGRR TEMR+ EI ++ ADGSA MGNT V A V+GP E + +++
Sbjct: 1 MEYISPEGYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRNR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ ++ + YS A F+T R R+ DR E + +++Q E I+T L+P + ID+
Sbjct: 61 EGAE---LMVSYSQATFATRKR-REQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLR 116
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP- 179
VQV+Q DG +A INA TLAL DAGIPM DIV + GY++ ++D+N E++ G
Sbjct: 117 VQVMQDDGSVTAAVINACTLALIDAGIPMIDIVAAAEGGYIDGKMVVDMNKDEENVGTVF 176
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
+V I+ V LLQ + K+P D++ + EG K +
Sbjct: 177 NVHTAIMQKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIG 218
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ +A I A ADGS+ E GN KV+ V GP E ++
Sbjct: 4 LEVYSPEGLRLDGRRWNELRRFQASISTHAHSADGSSYLEQGNNKVVTLVRGPGEPASRG 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +A +R ++ FS +R R + +RR EI +R+T E L HL PR+ ID
Sbjct: 64 QLDGQRATLRVSVNVTKFSKFERSRTSHRNERRVLEIQTSLRRTFEKACLLHLYPRTAID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
+ + VL+ DGG A IN TLAL DAG+ M D V S G + TPLLD N +E++A
Sbjct: 124 VELHVLEQDGGVLGAMINGITLALVDAGVAMWDYVAGVSVGLHDQTPLLDCNSLEETAVS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++L+ ++ K+P + E+V+ + I G + + + +E+RK
Sbjct: 184 T-VTLGVVGKTEKLSLMVVEDKIPLDRMENVLAIGIAGAHRIRDLMDQELRKH 235
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
E SPEGLRLDGRR E+R+ I A A DGS+ E GN K+I V GP+E +S
Sbjct: 4 FEIYSPEGLRLDGRRWNEVRRFECSINTHAHAADGSSYLEQGNNKIITLVKGPKEPSLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q S +A + ++ FS +R K +RR EI + +T E I+ HL PR+QI
Sbjct: 64 QANSLKATMDVSVNITRFSKFERSAISHKNERRVLEIQTALLRTFEKNIMLHLYPRTQIS 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I V +LQ DGG ++ IN TLAL DAGI M D V+ S G ++TPLLD+N +E++A
Sbjct: 124 IQVHILQQDGGMFASLINGITLALIDAGIAMYDYVSGISIGLFDTTPLLDVNTLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E V+ + I G + + + E+RK
Sbjct: 184 T-VTLGVIGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRLRDLMDEELRKH 235
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 141/231 (61%), Gaps = 4/231 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN KVI V GP+E KS
Sbjct: 4 VEIYSPEGLRLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +A+++ ++ FS +R + K +RR E+ + +T E ++ H+ PR+ ID
Sbjct: 64 QMDIQKAILKVTVNITKFSKFERSKSSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VLQ DGG +N +LAL DAGI M D V+ S G ++TPLLD+N +E++A
Sbjct: 124 IEIHVLQQDGGIMGTLLNGISLALIDAGIAMYDYVSGISVGLYDTTPLLDINSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVR 228
VT+G++ +K++LLQ++ K+P + E+V+ + I G + + + +E+R
Sbjct: 184 A-VTLGVVGKSEKLSLLQIEDKIPLDRIENVLAIGIAGAHRIRDLMEQEIR 233
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 147/237 (62%), Gaps = 4/237 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+F G RLDGR P EMR + ++G ++ ADGSA+ G TKV+AAVYGPRE K
Sbjct: 7 KFFDENGRRLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTV 66
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D+A + Y MA FST +R + P RR EIS V+R+ +E ++T L PR+ I+++V
Sbjct: 67 LPDRASLFVRYHMAPFSTEER-KSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYV 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ+DGGTR+A AA+LAL DAGIPMR +V + G +++ +LDLN ED+ G D+
Sbjct: 126 EVLQSDGGTRTASATAASLALADAGIPMRALVAGVAIGKVDNVVVLDLNEPEDNFGEADM 185
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVDIV 238
V P L +TL Q++ + + + +A+ KA++ + + ++ L +++ V
Sbjct: 186 PVVAAPDLGLITLFQLNGVMTVEETQKGLDMAL---KAISELVEKEKQTLRSSIEEV 239
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 139/232 (59%), Gaps = 3/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + + +DGS+ E GNTK+I V GP E +S
Sbjct: 4 MELYSPEGLRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q S +A + S+ANFST +R ++ K ++R E+ + +T E ++ L PR+ I I
Sbjct: 64 QTNSSKASIEINLSVANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVIQI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL DGG + NA TLAL DAGI M D V++ +AG + TPLLDLN +E++
Sbjct: 124 NLHVLCQDGGLLAGMTNAITLALIDAGIAMYDYVSAINAGLYDQTPLLDLNTLEENDMSC 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
+T+G++ +K+ LL ++ K+P + E V+ + I G V + + EVRK
Sbjct: 184 -LTIGVVGKSEKLALLLLEDKMPLDMLESVLAIGIAGGHRVRDLMDNEVRKH 234
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 129/220 (58%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+P ++R + E+G V A GSA G VIAAVYGP E +
Sbjct: 7 VQMIDENGRRMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKI 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A++ Y+MA FST DR+R P +RRS EIS V +E+ +L + PRS+I +
Sbjct: 67 SRQDRAVLDVRYNMAPFSTTDRIR-PGFNRRSREISKVTSDALESVVLLEMYPRSKIRVE 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+++L A+ GTR + AA++AL AGIPM D+V S ++G +N + DLN ED+ G D
Sbjct: 126 IEILCAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKINGVVICDLNKEEDNYGEAD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +G+LP + LQMD L + F+ +E AV
Sbjct: 186 LPMGMLPNSGDLVFLQMDGDLSPDEFQQAWDYNMEAGLAV 225
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME++SPEG RLDGRR TEMR+ EI + +DGSA MGNT V A V+GP E + +++
Sbjct: 1 MEYISPEGYRLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRRRNR 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ ++ + YS A F+T R R+ DR E + +++Q E I+T L+P + ID+
Sbjct: 61 EGAE---LMVSYSQATFATRKR-REQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLR 116
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP- 179
VQ++Q DG +A INA TLAL DAGIPM DIV++ GY++ ++D+N E++ G
Sbjct: 117 VQIMQDDGSVTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENVGTVF 176
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
+V I+ V LLQ + K+P D++ + EG K +
Sbjct: 177 NVHTAIMQKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIG 218
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E SPEGLR+DGRR E+R I + ADGS+ E GN K+I V GP+E ++SQ
Sbjct: 5 EIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ QA + ++ F+ +R + K +RR+ E + +T E ++ HL PR+ ID+
Sbjct: 65 VNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDV 124
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
V LQ DGG A +N TLAL DAGI M D V+ S G ++TPLLDLN +E++A
Sbjct: 125 QVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEENAMS- 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G + +K++LL ++ K+P + E VM + I G + + + +E+RK
Sbjct: 184 SVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKH 235
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 17/241 (7%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIG--NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+ ++ LR DGR+P E+R++R ++ +V+ GSA+ EMG T V+A V GP + ++
Sbjct: 9 DLLALSNLRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRA 68
Query: 60 QQMSDQALVRCEYSMANFSTG--DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ DQA++ A FS+ R+ PK DRR E S ++++ MEA IL HL P+S+I
Sbjct: 69 DENPDQAVLDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRI 128
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY--LNSTP------LLDL 169
++ V VL DGG A INAATLAL DAGIPM+D V +CSAG ++TP L+DL
Sbjct: 129 ELVVSVLADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDL 188
Query: 170 NYVEDSA-GGPDVT---VGILPTLDKVTLLQMDAKLPT-NTFEDVMQLAIEGCKAVANYI 224
N E+S+ GG T V +LP + + L Q +A+LP +T E V+ A EGC+AV + +
Sbjct: 189 NRQEESSTGGQAATHMPVALLPQRNTLVLAQCEARLPNLDTLERVLDAATEGCRAVFDIL 248
Query: 225 R 225
+
Sbjct: 249 Q 249
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 139/228 (60%), Gaps = 3/228 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I A DGS+ E GN K+I V GP+E ++S
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHASDGSSYLEQGNNKIITLVKGPKEPTSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +++AL+R ++ FS +R + + +RR E+ + +T E ++ +L PR+ ID
Sbjct: 64 QVDTNKALLRISVNITQFSKFERSKSSHRNERRVLEMQTALVRTFEKNVMLNLYPRTLID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VLQ DGG + +N TLAL DAGI M D ++ S G ++TPLLD+N +E++A
Sbjct: 124 IEIHVLQQDGGIMGSLLNGITLALIDAGIAMYDYISGISVGLYDTTPLLDVNSLEETAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
VT+G++ +K++LL ++ K+P + E V+ + I G + + + E
Sbjct: 184 -SVTLGVVGKSEKLSLLLVEDKIPLDRMETVLAIGIAGAHRIRDLMDE 230
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 143/226 (63%), Gaps = 2/226 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G RLDGR E+R L+ E G +A A+GSA E GN KV+AAVYGP+E + +++A
Sbjct: 13 DGKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKA 72
Query: 67 LVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+++C YSMA FS+ GD R +RR+ EIS V ++ E ++ P S+I+IF+++LQ
Sbjct: 73 IIKCRYSMAPFSSMGDHGRSGP-NRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
+DGGTR+A I AA +AL +AGI ++D+V + SAG ++ ++D+N +ED+ D+ V I
Sbjct: 132 SDGGTRAAGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMIEDNYSDADMPVSI 191
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
P + V LLQMD F + M++ +E K ++ R+ K L
Sbjct: 192 SPKDNSVLLLQMDGGFTKEQFGEAMKMILESGKVISKVQRDALKRL 237
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ I + A DGS+ E GN KVI V GP+E +S
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFECSINTHSHASDGSSYLEQGNNKVITLVKGPKEPTLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +++A+++ ++ FS +R + K +RR E+ + +T E ++ ++ PR+ ID
Sbjct: 64 QMDTEKAILKISVNITQFSKFERSKSSHKNERRVLEMQTALIRTFEKNVMLNIYPRTLID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I V VLQ DGG + IN TLAL DAGI M D ++ S G ++TPLLD+N +E++A
Sbjct: 124 IEVHVLQQDGGIMGSLINGITLALIDAGIAMYDYISGVSIGLYDTTPLLDVNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E V+ + I G V + + E+RK
Sbjct: 184 S-VTLGVVGKSEKLSLLLVEDKIPLDRLETVLAIGIAGAHRVRDLMDEELRKH 235
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 143/228 (62%), Gaps = 4/228 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGR+ E+R + ++ ADGSA G T+V+ V+GPRE + +SQ
Sbjct: 5 IEILNDGGYRSDGRKQYELRDITIDLTQQGTADGSAQLTHGLTQVLVTVFGPREAKMRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A++ E S+A FSTG+R ++ + DRR E++ +I T E + T+L PRSQIDI+
Sbjct: 65 TLHDRAVLNVEMSVAPFSTGERRKRSRADRRILEMAAMIASTFEPVVQTNLYPRSQIDIY 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V VLQ DG ACINA TLAL AG+P+ D V + + G +++PLLDL +E++ P
Sbjct: 125 VHVLQQDGSLLPACINATTLALVTAGVPLLDFVCAVTGGVHSTSPLLDLTTLEEN-DVPH 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR 228
+TV ++P KVTL+ M+ +L F ++ +LA C+A RE++
Sbjct: 184 MTVAVMPRTRKVTLVTMETRLHVERFRELFELA---CEAGQTIHREMK 228
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
ME +S +G R+DGR+P E+R+++ +G ++ADGSA E GNTKV+AAVYGP EV+ +KS
Sbjct: 4 MELLSDQGFRVDGRKPNELRRIQCRMGVFSQADGSAYIEQGNTKVLAAVYGPHEVRGSKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + DQAL+ C+YSMA FSTG+R R+P+GD++S E++L ++QT EA ILTHL PRSQIDI
Sbjct: 64 KAIHDQALINCQYSMAVFSTGERRRRPRGDKKSVEMTLHLKQTFEAAILTHLYPRSQIDI 123
Query: 120 FVQV 123
F++V
Sbjct: 124 FIEV 127
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 141/232 (60%), Gaps = 4/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ I + A DGS+ E GN KVI V GP+E ++S
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFECSINTHSHAADGSSYLEQGNNKVITLVKGPQEPSSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+R ++ FS +R + K +RR E+ + +T ++ ++ PR+ I+
Sbjct: 64 QVDTAKALLRISVNITKFSKTERSKTSHKNERRVLEMQTALVRTFNKNVMLNVYPRTLIN 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I V VLQ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEVHVLQQDGGIMGSLINGITLALIDAGIAMYDYISGVSVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRK 229
VT+G++ +K++LL ++ K+P + E+V+ + I G + + + +E+RK
Sbjct: 184 T-VTLGVVGKTEKLSLLLVEDKIPLDRLENVLAIGIAGTHRIRDLMDKELRK 234
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + A DGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHSHAADGSSYLEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 T-VTLGVVGKSEKLSLLLIEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 130/224 (58%), Gaps = 5/224 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R E+R + AE G V A GSA F +GNT+ IAAVYGP EV+ + + D+ ++
Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C+Y M FS DR KP DRR EIS VI + I+ MPR+ I++ V + QAD G
Sbjct: 65 CKYDMLPFSVPDRA-KPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAG 123
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVE----DSAGGPDVTVGI 185
TR A + AA++A DAG+PMRD+V + +AG + LDL+ E + G DV +
Sbjct: 124 TRCASLTAASMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAF 183
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
LP+ +++ LLQ+D ++ + + V+++ EG + +E K
Sbjct: 184 LPSKNEILLLQLDGRVSRDELKKVIEVGKEGAMKIYELEKEALK 227
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 134/220 (60%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+E+++ EG RLDGR+ E R ++ +GN ADG A +E+GNTK+++ + GP E++
Sbjct: 4 LEYINEEGYRLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTELKK 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ S ++C+ ++ F+ D+ +K D + EIS IR E IL L S+I
Sbjct: 64 TDEKCS----IKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG + A IN LAL DAGI ++ +++CS YL + ++D N +E ++G
Sbjct: 120 NIFLYIIERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNKIIVDGNQLEINSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
P++T+ I K+ LL+ DA++P + FE ++Q I+ C
Sbjct: 180 SPELTMVIELNTHKIILLEFDAEVPIDIFESMVQTCIDSC 219
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 4/211 (1%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R+ E+R + AE G + A GSA F++GNT+ IAAVYGP EV+ + + ++ ++
Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C+Y M FS DR R P DRR EIS VI + ++ MPR+ +++ + + QAD G
Sbjct: 65 CKYDMLPFSVPDRAR-PGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQADAG 123
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED---SAGGPDVTVGIL 186
TR A + AA++A DAG+PMRD+V + +AG + + LDL E+ G DV + +L
Sbjct: 124 TRCASLTAASMACADAGLPMRDLVAAVAAGKIGDSICLDLTKEEEDFHEGGATDVPIALL 183
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
P+ +++ LLQ+D K+ + V+++ +G
Sbjct: 184 PSKNEIVLLQLDGKVTREELKKVIEMGKKGA 214
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 4/232 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E SPEGLRLDGRR E+R+ I A A DGS+ E GN K++ V GP+E +SQ
Sbjct: 5 ELYSPEGLRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEPILRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ +A + ++ FS +R + K +RR E+ + +T E ++ HL PR+ IDI
Sbjct: 65 LDATKASLNITVNITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDI 124
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VLQ DGG + IN+ TLAL D+GI M D V++ S G ++TPLLD+N +E++A
Sbjct: 125 EIHVLQQDGGILGSLINSITLALIDSGIAMYDYVSAISIGLYDTTPLLDVNTLEENAMST 184
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E V+ + I G V + E+RK
Sbjct: 185 -VTLGVIGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRVRELMDNELRKH 235
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 24/240 (10%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S GLR DGRRP E+R++R +G +ADGSA E G TK++A VYGP + + K+ +
Sbjct: 8 SQGGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANAL 67
Query: 65 QA---LVRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+A +V C+YS A FS G+R +KP+GDR+S E S +R MEA I L RSQIDI
Sbjct: 68 KAVKGIVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDI 127
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-----------TPLLD 168
FV+VLQ DG +NAATLAL DAGIP++D CS ++ T +LD
Sbjct: 128 FVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGILD 187
Query: 169 LNYVEDSAGGPDVTVGILP-------TLDKVTLLQ-MDAKLPTNTFEDVMQLAIEGCKAV 220
N++E+ + G ++V LP T V L +L + E + A++GC+ +
Sbjct: 188 ANWIEECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSRLEPLRLRALQGCRDI 247
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 6 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 65
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 66 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 125
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 126 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 185
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 186 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 237
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 134/220 (60%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+E+++ EG RLDGR+ E R ++ +GN ADG A +E+GNTK+++ + GP E++
Sbjct: 4 LEYINEEGYRLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTELK- 62
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ D+ ++C+ ++ F+ D+ +K D + EIS IR E IL L S+I
Sbjct: 63 ---KSDDKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG + A IN LAL DAGI ++ +++CS YL + ++D N +E ++G
Sbjct: 120 NIFLYIIERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNQIIVDGNQLEINSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
P++T+ I K+ LL+ DA++P + FE ++Q I+ C
Sbjct: 180 SPELTMVIELNTHKIILLEFDAEVPIDIFESMVQTCIDSC 219
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 140/229 (61%), Gaps = 1/229 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGRR E+R + ++ + ADG A G T+V +V+GPRE + +SQ
Sbjct: 5 VEILNDGGYRSDGRRQYELRDINIDMTHQGPADGFATVSHGLTEVSVSVFGPREARLRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A + E ++A FSTGDR R+ +GD+R E I+ T E I T L PRSQIDI
Sbjct: 65 TIHDRANINVEVNIAPFSTGDRRRRNRGDKRILEFGATIKSTFEPVIQTSLYPRSQIDIH 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V VLQ DGG ACINA TLAL DAGIP+ DI+ + + G +++PLLDL +E++ P
Sbjct: 125 VLVLQQDGGVLQACINATTLALIDAGIPLLDILCAVTGGVHSTSPLLDLTNLEEN-DVPH 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+TV I+P K TL M+ +L + FE+V ++A E + ++ K
Sbjct: 184 ITVAIMPRTGKATLATMETRLHVDRFEEVFKIACEAAHVLHTEMKAAVK 232
>gi|406695095|gb|EKC98410.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 8904]
Length = 254
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 134/231 (58%), Gaps = 3/231 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ GLR D RRP E+R L +G +ADGS+ G T V AAV+GPRE + K+
Sbjct: 4 IEILNLAGLRHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQKAG 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRK--PKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
D+A V E + ++ G + +GD+R EI IRQT E I L PRS+I
Sbjct: 64 AAHDKANVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIA 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
+ VQVLQADGG INA TLAL DAGI M D VTS S G + LLDL+ E++
Sbjct: 124 VQVQVLQADGGILPTAINAVTLALIDAGIAMHDYVTSVSVGLHLTQALLDLSAPEEN-DL 182
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P + V LP K+TL QM+ +L + FE++++L E CK + + + +V K
Sbjct: 183 PSLVVASLPNSGKITLAQMETRLHVDRFEEMLRLGTEACKVIKDDMEQVVK 233
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ GLR D RRP E+R ++ +DGS+ G T V+ +V+GPRE +N+S
Sbjct: 6 VEILNDGGLRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSL 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A+V E + ++ G R+ +GD+R EI IRQT E I+THL PRS+I I
Sbjct: 66 ASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIH 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVL ADGG INA TLAL DAGI + D V+S S G PLLDL+ E+S P
Sbjct: 126 VQVLSADGGILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDLSQPEES-DLPS 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + LP+ K+TL QM+ +L + FE+++ L +E CK +
Sbjct: 185 LVIASLPSSGKITLAQMETRLHVDRFEEMLTLGVEACKVL 224
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 139/233 (59%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYLEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITRFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGTLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDDELRKH 235
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 12/239 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS-- 59
EF++ EG RLDGRRP E+R L +IG+ ADGSA + G TKV+A V+GPR +Q S
Sbjct: 6 EFLTYEGFRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVG 65
Query: 60 -----QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPR 114
+A+V Y ++F+T DR R+ GDR STE L +++ ++ +LT + P+
Sbjct: 66 RAAGTMARQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPK 125
Query: 115 SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDLNYVE 173
S ID+ + +LQ DG +AC+NAA AL DAGIP++D+ ++C+ G +N+ P++DLN+ E
Sbjct: 126 SCIDVHLTILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAE 185
Query: 174 -DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
+ GG VTV + ++ L ++ K+ +FE LAIEG +R +R F+
Sbjct: 186 SEGCGGAVVTVAVYQRRKELNYLCLEGKINIESFESAADLAIEGA---VTAVRAMRTFI 241
>gi|392575535|gb|EIW68668.1| hypothetical protein TREMEDRAFT_31716 [Tremella mesenterica DSM
1558]
Length = 252
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 131/229 (57%), Gaps = 1/229 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ GLR D RRP E+R L + ADGSA G T V ++GPRE + +S
Sbjct: 6 LEILNDGGLRHDARRPYELRSLSLLLSPHPTADGSATVTSGLTSVTVTIFGPREPRIRSS 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D + E + +S M++ +GDRR E+ + ++Q+ E I+ +L PRS+I I
Sbjct: 66 SSHDHVTLTVEVGVPPWSQQSGMKRTRGDRRLVEMGMSLKQSFEPVIMGNLYPRSEILIN 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVL +DGG INA TLAL DAGIP+ D +TS S G + PLLDL+ E+S P
Sbjct: 126 VQVLSSDGGILPTAINATTLALIDAGIPLLDYLTSISLGLHLTQPLLDLSQPEESD-LPS 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ V LP KVTL QM+ +L + FE+++ L +EGC + + V K
Sbjct: 185 LVVACLPASGKVTLAQMETRLHVDRFEEMLLLGVEGCGVIKMEMERVVK 233
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 131/233 (56%), Gaps = 14/233 (6%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ--MSDQA 66
LRLDGRR E+R++ A+I A ADGS+ E GNTK++ +V GP E + Q+ QA
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V E + A FS +R RK K D+R++E+ IR E +L HL P S I + + ++
Sbjct: 73 KVEVEINFAGFSGVER-RKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIVSQ 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCS----------AGYLNSTPLLDLNYVEDSA 176
DG +ACINA+TLAL DAGIPM D + +C+ PLLDLN E+
Sbjct: 132 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDPLLDLNNQEELE 191
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TVG L DKV + M++++ E ++ + IEGCK + N + V K
Sbjct: 192 -LPFLTVGTLGESDKVAVCLMESRVRMERLESMLAVGIEGCKRMRNILDGVVK 243
>gi|388851424|emb|CCF54826.1| probable exosome complex exonuclease rrp41 [Ustilago hordei]
Length = 269
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNV--AKADGSAVFEMGNTKVIAAVYGPREVQNK 58
+E ++ G R+DGR+ E+R + ++G ADGSA G T V A V+GPRE +
Sbjct: 4 VELLNAGGFRVDGRKQFELRSIAIQLGGSPDTSADGSAQITQGLTTVSATVFGPREARTG 63
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + D+A V E +A + + +R R+ +GDRR E + I+ T E I THL PRSQID
Sbjct: 64 ANMIHDRASVNVEVCLAPWGSTERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
IFVQV Q DGG A INAATLAL DAGI M+D V S S G +++ +LDL+ E+
Sbjct: 124 IFVQVHQQDGGVLPAAINAATLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNAEE-MDL 182
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
P VTV +LP +VTL ++ +L FE + LAIE + N
Sbjct: 183 PHVTVAVLPRTKQVTLASLETRLHVERFEQIFTLAIEAAAVLHN 226
>gi|401885352|gb|EJT49471.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 2479]
Length = 254
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 133/231 (57%), Gaps = 3/231 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ GLR D RRP E+R L +G +ADGS+ G T V AAV+GPRE + K+
Sbjct: 4 IEILNLAGLRHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQKAG 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRK--PKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
D+A V E + ++ G + +GD+R EI IRQT E I L PRS+I
Sbjct: 64 AAHDKANVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIA 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
+ VQVLQADGG INA TLAL DAGI M D VTS S G + LLDL+ E++
Sbjct: 124 VQVQVLQADGGILPTAINAVTLALIDAGIAMHDYVTSVSVGLHLTQALLDLSAPEEN-DL 182
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P + V LP K+TL QM+ +L + FE +++L E CK + + + +V K
Sbjct: 183 PSLVVASLPNSGKITLAQMETRLHVDRFEVMLRLGTEACKVIKDDMEQVVK 233
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 4/232 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
E SPEGLR+DGRR E+R+ I + A DGS+ E GN K+I V GP+E +S
Sbjct: 4 FEIYSPEGLRVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +AL++ ++ FS +R + K +RR EI + +T ++ H+ PR+ ID
Sbjct: 64 QMDPTKALLKVSVNITKFSKTERSKTSHKNERRVLEIQTALTRTFNKNVMLHIYPRTLID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VLQ DGG IN TLAL DAGI M D ++ S G ++TPLL++N +E++
Sbjct: 124 IEIHVLQQDGGLVGTLINGITLALIDAGIAMFDYISGVSVGLYDTTPLLEVNSLEENVMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRK 229
VT+G++ +K++LL ++ K+P + E V+ + I G V + E+RK
Sbjct: 184 -SVTLGVVGKTEKLSLLLVEDKIPLDRLESVLAIGIAGAHRVRELMDSELRK 234
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 133/227 (58%), Gaps = 5/227 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+++PEG R+DGRRPTEMR+ E+G ADGSA MGNT V A V GP E + ++
Sbjct: 1 MEYITPEGYRVDGRRPTEMRKCEMELGFEKSADGSARVRMGNTLVEAVVSGPMEGKRRNH 60
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D A ++ +S A F+T R R+ DR E S +++Q E +L +P + I+I
Sbjct: 61 ---DSAELKVFFSQATFAT-RRRRERMFDRNMAETSELLKQMYEQVVLVKQLPETSIEIR 116
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP- 179
VQVLQ DG +A INA TLAL DAGIPM DIV+S GY++ ++D+ E++AG
Sbjct: 117 VQVLQDDGSVNAAAINACTLALIDAGIPMSDIVSSAEGGYISGRMVVDMGKDEENAGTVF 176
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+V ++ V +LQ + K+P +++ + EG K ++E
Sbjct: 177 NVHTAVMHNSGTVAILQTEGKMPLKRLGELLSVVEEGAKEAGIQMKE 223
>gi|443895550|dbj|GAC72896.1| inositol polyphosphate multikinase, component of the ARGR
transcription regulatory complex [Pseudozyma antarctica
T-34]
Length = 266
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 136/227 (59%), Gaps = 3/227 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNV--AKADGSAVFEMGNTKVIAAVYGPREVQNK 58
+E ++ G R+DGR+ E+R + ++G ADGSA G T V A V+GPRE ++
Sbjct: 4 VELLNAGGFRVDGRKQYELRSIAIQLGGSEDTTADGSAQITHGLTTVSATVFGPREARSG 63
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ D+A + E ++A + + +R R+ +GDRR E + I+ T E + THL PRSQID
Sbjct: 64 GNMLHDRASLNVEVALAPWGSMERRRRNRGDRRLVEFASAIKSTFEPVVHTHLYPRSQID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
IFV V Q DGG A INAATLAL DAGI M D V + S G ++ LLDL+ E+S
Sbjct: 124 IFVHVHQQDGGVLPAAINAATLALLDAGIAMHDFVAAVSCGIHSTAALLDLSNAEES-DL 182
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
P++TV +LP +VTL ++ +L F+ + LAI+ + + N ++
Sbjct: 183 PNLTVAVLPRTKQVTLASLETRLHVERFQQIFNLAIDAAQVLHNEMQ 229
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 130/232 (56%), Gaps = 14/232 (6%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS---DQ 65
LRLDGRR E+R+L A++ A ADGS+ EMGNTKVI V GP E + + QM D+
Sbjct: 13 LRLDGRRWNELRRLTAQMRTQAAADGSSYLEMGNTKVICTVAGPSEGKAGTGQMGGARDR 72
Query: 66 ALVRCEYSMANFSTGDRMR--KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A V S+A FS DR R +GD+R E+ I +LTHL P S I + + +
Sbjct: 73 ATVDVTISVAGFSGVDRKRGGAGRGDKRLAEMQTTISTAFAQTLLTHLYPHSSIALSLHI 132
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDS 175
L DG +ACINA+TLAL DAGIPMR + +C+AG +S PLLDLN E+
Sbjct: 133 LSQDGSLLAACINASTLALVDAGIPMRGYICACTAGSTSSYSSNDERADPLLDLNAAEEQ 192
Query: 176 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
P +TV + D V++L M+ ++ E ++ + + GC V + +V
Sbjct: 193 E-LPFLTVATVAGSDDVSVLVMETRVQAGRLEGMLTVGVSGCMQVREILDKV 243
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 6/228 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKAD-GSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR+DGRR E+R+ +I + GS+ E GNTKVI V GP E + +S
Sbjct: 4 LELYSPEGLRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q +A + ++A+FST +R ++ K ++R E+ + +T E ++ L PR+ I +
Sbjct: 64 QVDVSRATIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKV 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL DGG + INA TLAL DAGI M D V + +AG N TPLLDLN +E++
Sbjct: 124 NLHVLAQDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPLLDLNTLEEN-DMS 182
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+T+G++ +K+ +L ++ K+P + E V+ + I G ++ IRE+
Sbjct: 183 HLTLGVIGKSEKLAVLMLEDKMPMDRLEPVLAIGIAG----SHRIREL 226
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 136/233 (58%), Gaps = 13/233 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--QA 66
LRLDGRR E+R++ A+I A ADGS+ EMGNTK++ +V GP E + Q+ + QA
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V E + A FS +R R+ GD+RS E+ +R E +L HL P S I + + ++
Sbjct: 73 KVEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQ 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST----------PLLDLNYVEDSA 176
DG +ACINA+TLAL DAGIPM D + +C+A S+ PLLDLN +E+
Sbjct: 133 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASSSAADNASAEDPLLDLNTLEEQE 192
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TVG L DKV + ++ ++ E ++ + IEGCK + + + EV K
Sbjct: 193 -LPFLTVGTLGESDKVAVCVLETRVRMERLEGMLAVGIEGCKRLRSILDEVVK 244
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 130/218 (59%), Gaps = 1/218 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ GLR D RRP E+R ++ +DGS+ G T V +V+GPRE +N+
Sbjct: 6 VEILNDGGLRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVAVSVFGPREPRNRGL 65
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A+V E + ++ G R+ +GD+R EI IRQT E I+THL PRS+I I
Sbjct: 66 ASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIH 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VQVL ADGG INA TLAL DAGI + D V+S S G PLLDL+ E+S P
Sbjct: 126 VQVLSADGGILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDLSQPEES-DLPS 184
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
+ + LP+ K+TL QM+ +L + FE+++ L +E CK
Sbjct: 185 LVIASLPSSGKITLAQMETRLHVDRFEEMLTLGVEACK 222
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGR+ E+R + ++ A ADGSA+ G T+V+ +VYGPRE + +SQ
Sbjct: 5 IEILNAHGYRSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+A + E A FS+G+R ++ +GD+R+ E+ ++QT E +LT + PRS ID+F
Sbjct: 65 SAHDRATINVEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ +LQ DG ACINA TLAL AG+P+ D V + SAG ++ +LDL +E++ P
Sbjct: 125 ITILQQDGSLIPACINATTLALICAGVPLLDFVCAVSAGVHDTESMLDLTTLEEN-DLPW 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
V ++P KV ++ ++ +L FE++ ++A++ K + ++
Sbjct: 184 VNAAVMPKTGKVVMVGLETRLHVQRFEEMFRIALDAAKVLHQEMK 228
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 3/224 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR DGRR E+R+ I A +DGS+ E GN KVI V GP+E KS
Sbjct: 4 LEVYSPEGLRQDGRRWNELRRFDCSINTHAHTSDGSSYLEQGNNKVITIVKGPQEPPLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +A + ++ FS +R + + K ++R E+ ++ +T + IL HL PR+ ID
Sbjct: 64 QLDQTKATLNISLNITPFSKFERSKTQHKNEKRILELQTILIKTFKKNILMHLYPRTLID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VLQ DG S IN TLAL DAGI + D ++ S G N TPLLDLN E+
Sbjct: 124 IQIHVLQQDGSLLSCLINGITLALIDAGIAIYDFISGISIGLFNETPLLDLNSQEEIVMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
VT+G++ +K++LL ++ KLP + E+V+ + I G + +
Sbjct: 184 -SVTLGVVGNSEKLSLLFIEDKLPLDIMENVLAIGIAGAHRIKD 226
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 6/228 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLR+DGRR E+R+ +I + GS+ E GNTKVI V GP E + +S
Sbjct: 4 LELYSPEGLRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q +A + ++A+FST +R ++ K ++R E+ + +T E ++ L PR+ I +
Sbjct: 64 QVDVSRATIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKV 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL DGG + INA TLAL DAGI M D V + +AG N TPLLDLN +E++
Sbjct: 124 NLHVLAQDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPLLDLNTLEEN-DMS 182
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+T+G++ +K+ +L ++ K+P + E V+ + I G ++ IRE+
Sbjct: 183 HLTLGVIGKSEKLAVLMLEDKMPMDRLEPVLAIGIAG----SHRIREL 226
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 122/197 (61%), Gaps = 2/197 (1%)
Query: 18 EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANF 77
E+R ++A++G +ADGSA E GNTKV+A + GP + + S V CE+ A+F
Sbjct: 39 ELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYASF 98
Query: 78 STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINA 137
ST R + + DR+ E I +T+E+ ++ L+ RS I++ VQVLQADGG + INA
Sbjct: 99 STDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAINA 158
Query: 138 ATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM 197
A+LA+ DAG+PM+D + +C+AG L +LD N+ E A GPD+TV ++P + + L Q
Sbjct: 159 ASLAMMDAGVPMKDFLCACNAGVLEGVAVLDTNHSEALARGPDLTVAVMPRTNTIVLNQ- 217
Query: 198 DAKLPTNTFEDVMQLAI 214
D K TN FE M L +
Sbjct: 218 DEKRQTN-FELTMALKL 233
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 135/231 (58%), Gaps = 11/231 (4%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E Q + + S +A
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQSKEA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V +A FS+ DR ++ + D+R+ E+ I + + A + THL P S I I + VL
Sbjct: 73 AVTVNLVVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQ 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGG 178
DG +A +NA+TLAL DAGIPM D + +C+AG ++ PLLDLN E+
Sbjct: 133 DGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQE-L 191
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TVG L D+V +L ++++ + E ++ + ++GCK V ++ V K
Sbjct: 192 PYMTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVK 242
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 126/222 (56%), Gaps = 14/222 (6%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ--MSDQA 66
LRLDGRR E+R++ A+I A ADGS+ E GNTK++ +V GP E + Q+ QA
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V E + A FS +R RK K D+R++E+ IR E +L HL P S I + + ++
Sbjct: 73 KVEVEINFAGFSGVER-RKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIVSQ 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCS----------AGYLNSTPLLDLNYVEDSA 176
DG +ACINA+TLAL DAGIPM D + +C+ PLLDLN E+
Sbjct: 132 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDPLLDLNNQEELE 191
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
P +TVG L DKV + M++++ E ++ + IEGCK
Sbjct: 192 -LPFLTVGTLGDSDKVAVCLMESRVRMERLESMLAVGIEGCK 232
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 3/224 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNV--AKADGSAVFEMGNTKVIAAVYGPREVQNK 58
+E ++ G R+DGR+ E+R + ++G ADG A G T V A V+GPRE ++
Sbjct: 4 VELLNAGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSG 63
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ M D+A V E S+A + + +R R+ +GDRR E + I+ T E I THL PRSQID
Sbjct: 64 ANVMHDRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
IFVQV Q DGG A INA+TLAL DAGI M+D V S S G +++ +LDL+ E+
Sbjct: 124 IFVQVHQQDGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNTEEQ-DL 182
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
P VTV +LP ++TL ++ +L FE + LAI+ + N
Sbjct: 183 PHVTVAVLPRTKQITLASLETRLHVERFEQIFTLAIQAVAVLHN 226
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 138/228 (60%), Gaps = 7/228 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+E+V+ EG RLDGR+ E R ++ +GN ADG A +E+GNTK+++ + GP E++
Sbjct: 4 VEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTELKK 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ S ++CE ++ F+ ++ +K D + EIS IR E IL L S+I
Sbjct: 64 SEEKCS----IKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG + A IN LAL DAGI ++ +++CS YL + L+D N +E ++G
Sbjct: 120 NIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQNRILVDGNQLEINSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
P++T+ I K+ LL+ DA++P + FE +++ ++ C + N ++
Sbjct: 180 APELTMVIELNTHKIILLEFDAEVPIDIFEAMVRTCMDCCVNLGNVMK 227
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 3/228 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E SPEGLRLDGRR E+R+ I + ADGS+ E GN K+I V GP E +SQ
Sbjct: 5 EIYSPEGLRLDGRRWNELRRFECSINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+A + +M F+ +R + K +RR E+ + +T E ++ L PR+ ID+
Sbjct: 65 VNPSKATLTVTVNMTKFAAAERSKTGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDV 124
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
V VLQ DGG + IN TLAL DAGI M + ++ S G ++TPLLDLN +E+ A
Sbjct: 125 QVHVLQNDGGVLGSMINGITLALIDAGIAMYEYISGISVGLYDTTPLLDLNRLEEQAMSC 184
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
T+G++ +K++LL ++ K+P + E VM L I G V + + +V
Sbjct: 185 -FTLGVVGKSEKLSLLLVEDKVPLDRLESVMSLGIAGTHRVRDMMDKV 231
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
EG RLDGR P E R + + G +++A GSA EM TKVI VYGPR Q S++
Sbjct: 36 EGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPR--QTPKTVYSEKG 93
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C + +A F+ RK D+ E+S+++ Q +E + P+S++D+FV VL+
Sbjct: 94 KLNCFFKLATFAENGERRKYVSDKEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEE 153
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
GG A I AA+LAL DAGI M D+V SCS G ++S LLD + E+ A ++ V I+
Sbjct: 154 SGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIM 213
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
P+ +++T + ++ + ++L ++GC + +R+
Sbjct: 214 PSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQ 253
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 135/231 (58%), Gaps = 11/231 (4%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E Q + + + +A
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V +A FS+ DR ++ + D+R+ E+ I + + A + THL P S I I + VL
Sbjct: 73 AVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQ 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGG 178
DG +A +NA+TLAL DAGIPM D + +C+AG ++ PLLDLN E+
Sbjct: 133 DGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQE-L 191
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TVG L D+V +L ++++ + E ++ + ++GCK V ++ V K
Sbjct: 192 PYMTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVK 242
>gi|374724589|gb|EHR76669.1| exosome complex component RRP41 [uncultured marine group II
euryarchaeote]
Length = 242
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 137/227 (60%), Gaps = 5/227 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + +GLRLDGR+ EMR + E G + ADGSA+ G +AAVYGP E +
Sbjct: 7 VQLLRDDGLRLDGRKIDEMRPMTIEAGVLPAADGSAMVTHGLNVAVAAVYGPMEAHPRKI 66
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++ Y+MA FST DR+R P +RRS EIS V + +E+ +L PRS+I +
Sbjct: 67 QRQDRAVIDVRYNMAPFSTSDRIR-PGYNRRSREISKVTAEALESVVLVERYPRSKIRVE 125
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+++L A+ GTR A + AA +AL DAGIPMRD++ ++G + T +LDL+ ED+ G D
Sbjct: 126 IEILAAEAGTRCAGLTAAAVALADAGIPMRDLIVGVASGKVEGTVVLDLDKAEDNYGQAD 185
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ VGILP ++ LQMD L + + LA+E A I E+
Sbjct: 186 LPVGILPNTGEIAFLQMDGDLSPDEY----NLAMEYNFKAAAEIHEI 228
>gi|343426755|emb|CBQ70283.1| probable exosome complex exonuclease rrp41 [Sporisorium reilianum
SRZ2]
Length = 272
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNV--AKADGSAVFEMGNTKVIAAVYGPREVQNK 58
+E ++ G R+DGR+ E+R + ++G ADGSA G T V A V+GPRE ++
Sbjct: 4 VELLNAGGFRVDGRKQYELRSIAIQLGGSQDTAADGSAQITQGLTIVSATVFGPREARSG 63
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + D+A + E S+A + + +R R+ +GDRR E + I+ T E I THL PRSQID
Sbjct: 64 ANVIHDRASLNVEVSLAPWGSMERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
IFVQV Q DGG A INA+TLAL DA I M D V S S G +++ +LDL+ E+
Sbjct: 124 IFVQVHQQDGGVLPAAINASTLALLDASIAMHDFVASVSCGIHSTSAMLDLSNTEEQ-DL 182
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
P +TV +LP +VTL ++ +L FE + LAIE + N
Sbjct: 183 PHLTVAVLPRTKQVTLASLETRLHVERFEQIFTLAIEAAAVLHN 226
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax Sal-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 138/228 (60%), Gaps = 7/228 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+E+V+ EG RLDGR+ E R ++ +GN ADG A +E+GNTK+++ + GP E++
Sbjct: 4 VEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTELKK 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ S ++CE ++ F+ ++ +K D + EIS IR E IL L S+I
Sbjct: 64 SEEKCS----IKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG + A IN LAL DAGI ++ +++CS +L + L+D N +E ++G
Sbjct: 120 NIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLFLQNRILVDGNQLEINSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
P++T+ I K+ LL+ DA++P + FE +++ ++ C + N ++
Sbjct: 180 APELTMVIELNTHKIVLLEFDAEVPIDIFEAMVRTCMDCCINLGNVMK 227
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 3/223 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + ADGSA E GNTK++ + GP E +S
Sbjct: 1 MELYSPEGLRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHE-PTRS 59
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q + + + + ++ FST +R + + DRR E+S +++ T E ++ PR+ I++
Sbjct: 60 QMNTQKGSLDIKLHVSPFSTTERRKVTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEV 119
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
V+VL DGG +AC NA TLAL DAGI + D +++ SAG ++ LLDLN +E+
Sbjct: 120 NVRVLAQDGGLLAACCNAITLALVDAGIALYDYISAVSAGVFDNQILLDLNRLEEQ-DLS 178
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
VT+G++ K++L+ + +LP + V ++A+ GC + +
Sbjct: 179 SVTIGVVGKTKKLSLVLSETRLPQDRLAKVFEVAVNGCHQLKD 221
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 135/233 (57%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ A I A +DGS+ E GN K+ V GPRE +S
Sbjct: 4 LEIYSPEGLRLDGRRWNELRKFDASINTHAHLSDGSSYLEQGNNKIFTLVKGPREPSQRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q +A + ++ FS +R + K +RR+ EI + +T E ++ PR+ ID
Sbjct: 64 QLDQSKATLNVTVNITRFSKFERSKASHKNERRTLEIQTSLVRTFEKNLMLQNYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VLQ DGG + IN TLA DAGI M D ++ S G ++ PLLD+N +E++A
Sbjct: 124 IEIHVLQQDGGLVGSLINGITLACIDAGIAMYDYISGVSVGLYDTVPLLDINSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
T+G++ +K++LL ++ K+P + E+V+ + I G + + + +E+R+
Sbjct: 184 C-ATLGVVGKTEKLSLLLVEDKIPLDRLENVLAIGIAGAHRIRDLMDQELRRH 235
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 147/254 (57%), Gaps = 15/254 (5%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEI--GNVAKADGSAVFEMGNTKVIAAVYGPREV--- 55
+E +S GLR D RRP E+RQL +I + DGS++ G TKV ++V GP+E+
Sbjct: 4 IEILSSAGLRQDNRRPYELRQLDFKILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSS 63
Query: 56 ------QNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILT 109
N ++ ++ +M NFS DR + K D+R ++S I+ T E+ I+
Sbjct: 64 SSSNHKSNLKSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVIML 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLL 167
L PRS I+IF++VLQ DGG A INA +L+L +GI ++D + + S G L+ + PLL
Sbjct: 124 KLYPRSLIEIFIEVLQEDGGLLQAAINATSLSLIASGISIQDYILAISIGSLSNPNLPLL 183
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN-YIRE 226
D+ +E P +T+ LP K++L+Q++++L + FE + ++ +E C+ + + + E
Sbjct: 184 DVTNLE-QLDLPSLTIASLPRSSKISLIQVESRLNIDEFEKLCRIGLEACEVLKDELLGE 242
Query: 227 VRKFLLIAVDIVGL 240
V++++L IVG
Sbjct: 243 VKRWMLDLNSIVGF 256
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 138/235 (58%), Gaps = 9/235 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E S EGLR+DGRR E+R+ I + +DGS+ E GN+K++ V GP E K+
Sbjct: 4 LELYSQEGLRMDGRRWNELRRFDCRINTHPNSSDGSSYVEQGNSKIVCIVNGPMEPPTKA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q + A + ++ FS+ DR ++ K +RR EI +++T E I+ PR+ I I
Sbjct: 64 QLSTTGATLNLNLNVTPFSSIDRKKRSKNERRIQEIITSLKRTFEQSIIIDKYPRTTISI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
V VL DGG S+ NA TLAL DAGI M + +++ SAG+ ++TPLLDLN +E+
Sbjct: 124 NVHVLSLDGGLISSITNAITLALIDAGIAMYEYISAVSAGWYDNTPLLDLNSLEEK---- 179
Query: 180 DV---TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
DV T+ ++ +K+ LL ++ K+P + E V+ +AI G + + + +EVR+
Sbjct: 180 DVSYLTLAVVGKSEKLALLILENKIPLDQLESVLAIAIAGGHRIRDIMDKEVRRH 234
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 97/129 (75%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++PEGLR+DGRR E+R++ A+ ++ADGSA E GNTK +AAVYGPREV+++ Q
Sbjct: 4 LELLTPEGLRVDGRRANELRKITAKTSVFSQADGSAYIEQGNTKCLAAVYGPREVRHRMQ 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+SD+A++ E+++A FST +R ++ K D+RS E++ IRQT E +LT PRSQIDI+
Sbjct: 64 ALSDRAIINVEFNIAPFSTSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQIDIY 123
Query: 121 VQVLQADGG 129
+QV Q DGG
Sbjct: 124 LQVFQNDGG 132
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 10/228 (4%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE-VQNKSQQMSDQAL 67
LRLDGRR E+R+L A + + +DGSA E GNTK++A V GP+E V+ + S +A
Sbjct: 13 LRLDGRRWNELRRLHASLSVQSSSDGSAYLEQGNTKILATVSGPQEPVRRTGRDGSSEAK 72
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ E ++ FS DR R+ KG++R E+ L + + + +L HL P S +++ + VL D
Sbjct: 73 IEVEVNVTPFSGTDRKRRAKGEKRVQELQLTVARAFQGVVLGHLYPHSVVEVRLHVLSQD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAG--------YLNSTPLLDLNYVEDSAGGP 179
G +AC+NAATLAL DAGIPM D + +C+ +S PLLDLN +E+ P
Sbjct: 133 GSLLAACLNAATLALIDAGIPMTDYIAACTVASSPSSDQSIDDSDPLLDLNGLEEQE-LP 191
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+++ KV +L M+ K+ E ++ + ++GC + + EV
Sbjct: 192 FLSIATSGEEGKVCVLMMETKVQMARLEAMVSVGLDGCGQIRGILDEV 239
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 121/216 (56%), Gaps = 1/216 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSP GLRLDGRRP E R++ G ++ DGS +G +KV A+V+GPRE +K +
Sbjct: 6 EYVSPAGLRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEA 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ALV CE ++A F+ +R + R S +I + Q + IL P SQI I++
Sbjct: 66 KHDKALVTCEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ DG + ACINAA LAL DA + MRD V AG L+ L+DL E + P +
Sbjct: 126 EVLQQDGNEKIACINAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVI 185
Query: 182 TVGIL-PTLDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
+ L+ ++LP ++ +++ A EG
Sbjct: 186 AAAFTGHDTRNIIWLETTSRLPPDSATRLLKCAEEG 221
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 18/229 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE---------VQNKS 59
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
S A V +A FS+ DR R+ +GD+ E+ I Q + A + THL P S I+I
Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINI 132
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNY 171
+ VL DG +A INAATLA DAGIPM D V +C+AG ++ PLLD+N+
Sbjct: 133 SLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 192
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
E+ P +TV L D+V +L ++++ + E ++ + ++GCK V
Sbjct: 193 QEEQE-LPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQV 240
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 18/229 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE---------VQNKS 59
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
S A V +A FS+ DR R+ +GD+ E+ I Q + A + THL P S I+I
Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINI 132
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNY 171
+ VL DG +A INAATLA DAGIPM D V +C+AG ++ PLLD+N+
Sbjct: 133 SLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 192
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
E+ P +TV L D+V +L ++++ + E ++ + ++GCK V
Sbjct: 193 QEEQE-LPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQV 240
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 4/231 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEG+R+DGRR E+R+ I + ADGS+ E GN K+I V GP+E +S
Sbjct: 4 LEIYSPEGIRIDGRRWNELRRFDYSINTHPNAADGSSYLEQGNNKIITLVKGPQEPNLRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q S++ + ++ FS +R + + +RR+ E+ + +T E I+ L R+ ID
Sbjct: 64 QVNSNKGTLTVTVNITKFSDIERSQAGHRNERRTLELQTALVRTFEKNIMLQLYSRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + V+Q DGG A IN TLAL DAGI M D ++ S G ++TPLLDLN +E++A
Sbjct: 124 IQIHVIQKDGGLLGAMINGITLALIDAGIAMYDYISGVSVGLYDTTPLLDLNALEENALS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVR 228
VT+ ++ +K++LL ++ K+P + E VM + I G + + + +E+R
Sbjct: 184 S-VTLAVVGKSEKLSLLLVEDKVPLDRLESVMAIGIAGSHRIRDLMDKELR 233
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 125/222 (56%), Gaps = 14/222 (6%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL- 67
LRLDGRR E+R++ A+I A ADGS+ EMGNTK++ +V GP E + Q+
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72
Query: 68 -VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V E + A FS DR RK K D+R++E+ +R E +L HL P S I + + ++
Sbjct: 73 KVEVEINFAGFSGVDR-RKRKSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQ 131
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCS----------AGYLNSTPLLDLNYVEDSA 176
DG +ACINAATLAL DAGIPM D + +C+ PLLDLN E+
Sbjct: 132 DGSLLAACINAATLALIDAGIPMSDYLVACTAASSASASAADNASADDPLLDLNNQEELE 191
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
P +TV L DKV++ M++++ E ++ + IEGCK
Sbjct: 192 -LPFLTVATLGESDKVSVCIMESRVRMERLEGMLAVGIEGCK 232
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 18/229 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE---------VQNKS 59
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ + GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVINGPSEPGPRRGATSGGGGG 72
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
S A V +A FS+ DR R+ +GD+ E+ I Q + A + THL P S I+I
Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINI 132
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNY 171
+ VL DG +A INAATLA DAGIPM D V +C+AG ++ PLLD+N+
Sbjct: 133 SLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 192
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
E+ P +TV L D+V +L ++++ + E ++ + ++GCK V
Sbjct: 193 QEEQE-LPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQV 240
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 130/235 (55%), Gaps = 16/235 (6%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ---MSDQ 65
LRLDGRR E+R + A+I A ADGS+ EMGNTKV+ +V GP ++ Q SD+
Sbjct: 13 LRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVSGPAAEGKQTGQRGTTSDK 72
Query: 66 -ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
A + E + A FS DR RK K D++++E+ +R E + HL PRS I I V ++
Sbjct: 73 LAKIDVEINFAGFSGVDR-RKRKTDKKTSEMEHCLRSAFEGVVSLHLYPRSTITINVHIV 131
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCS----------AGYLNSTPLLDLNYVED 174
DG +AC+NAATLAL DAGIPM D + +C+ PLLDLN E+
Sbjct: 132 SQDGSLLAACLNAATLALVDAGIPMTDYLVACTAASSASAEAADNASADDPLLDLNNQEE 191
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TV L D V + M++++ E ++ + IEGCK + + +V K
Sbjct: 192 LE-LPFLTVATLGESDNVAVCVMESRVRMERLESMLAVGIEGCKRMRGILDDVVK 245
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 3/217 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSP GLRLDGRRP E R++ G ++ DGS +G +KV A+++GPRE +K +
Sbjct: 6 EYVSPAGLRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEA 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ LV CE ++A F+ R + R S +I + Q + IL P SQI I++
Sbjct: 66 KHDKVLVTCEVAVAAFAGESRRNPQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ DG + ACINAA LAL DA + MRD+V S G L+ L+DL E + P V
Sbjct: 126 EVLQQDGNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLANDELRSQCP-V 184
Query: 182 TVGILPTLD--KVTLLQMDAKLPTNTFEDVMQLAIEG 216
V D + L+ ++LP ++ +++ A +G
Sbjct: 185 IVAAFTGHDTQNIIWLETTSRLPPDSVARLLKCAEQG 221
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 12/232 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS---DQ 65
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E Q + D
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 66 ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
A + +A FS+ DR ++ + D+R EI I + + + THL P S I I + VL
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL--------NSTPLLDLNYVEDSAG 177
DG +A INA TLAL DAGIPM D + +C+AG N+ PLLDLN E+
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDYIAACTAGSTSTYAAGDDNADPLLDLNNQEEQE- 191
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TV D+V +L ++++ + E ++ + ++GCK V ++ +V K
Sbjct: 192 LPFLTVATHGDTDRVAVLVCESRVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 243
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 133/238 (55%), Gaps = 18/238 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS----- 63
LR+DGRR E+R+L A+I ADGS+ FEMG+TKV+ V GP E Q Q
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72
Query: 64 ----DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
D A + +A FS+ DR ++ + D+R+ EI + I + + + + THL P S I +
Sbjct: 73 APGRDAASIIVNVVIAGFSSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSITV 132
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNY 171
+ VL DG +A INAATLA+ DAGIPM D + +C+AG +S PLLDLN
Sbjct: 133 SLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGSTSSYAAGDDSADPLLDLNN 192
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
E+ P +TV L D+V L ++++ + E ++ + ++GCK V ++ + K
Sbjct: 193 QEEQE-LPFLTVASLGDSDRVVALVCESRVQVSRLEGMLVVGLDGCKQVKMFLDKTIK 249
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 122/217 (56%), Gaps = 3/217 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSP GLRLDGRRP E R++ G ++ DGS +G +KV A+++GPRE +K +
Sbjct: 6 EYVSPAGLRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEA 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ LV CE ++A F+ R + + S +I + Q + IL P SQI I++
Sbjct: 66 KHDKVLVTCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ DG + ACINAA LAL DA + MRD+V S G L+ L+DL E + P V
Sbjct: 126 EVLQQDGNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLANDELRSQCP-V 184
Query: 182 TVGILPTLD--KVTLLQMDAKLPTNTFEDVMQLAIEG 216
V D + L+ ++LP ++ +++ A +G
Sbjct: 185 IVAAFTGHDTQNIIWLETTSRLPPDSVARLLKCAEQG 221
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 1/216 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSP GLRLDGRRP E R++ G ++ DGS +G +KV A V+GPRE +K +
Sbjct: 6 EYVSPAGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEA 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ LV CE ++A F+ +R + + S +I + Q + IL P SQI I++
Sbjct: 66 KHDKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ DG + AC+NAA LAL DA + MRD V AG L+ L+DL E + P +
Sbjct: 126 EVLQQDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTSNELRSQCPVI 185
Query: 182 TVGIL-PTLDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
+ L+ ++LP ++ +++ A EG
Sbjct: 186 AAAFTGHDTRNIIWLETASRLPPDSVTRLLKCAEEG 221
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 13/233 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS----D 64
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E + +++ D
Sbjct: 13 LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
A + A FS+ DR ++ + D+R+ EI + I + + THL P S I I + VL
Sbjct: 73 VAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVL 132
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSA 176
DG +A +NA TLAL DAGIPM D + +C+AG ++ PLLDLN E+
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDYIAACTAGSTSTYAAGDDSADPLLDLNNQEEQE 192
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TV L D+V L ++++ + E ++ + ++GCK V ++ +V K
Sbjct: 193 -LPFLTVATLGGSDRVAALVCESRVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 244
>gi|367019368|ref|XP_003658969.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
gi|347006236|gb|AEO53724.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
Length = 279
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 24/242 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE-------------- 54
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGGAG 72
Query: 55 -VQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMP 113
+ +A V +A FS+ DR R + D+R+ E++ + + A + THL P
Sbjct: 73 GGGAGAGGTGGKAEVVVGIVIAGFSSVDRKRHGRNDKRTLELASTVANALAASLHTHLFP 132
Query: 114 RSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TP 165
SQI+I + VL DG +A INAATLA DAGIPM D VT+C+AG ++ P
Sbjct: 133 HSQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGADP 192
Query: 166 LLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
LLDLN+ E+ P +TV L D+V +L ++++ + E ++ + ++GCK + +
Sbjct: 193 LLDLNHQEEQE-LPGLTVATLGETDRVAVLVCESRVQVSRLEGMLAVGVDGCKQMREILD 251
Query: 226 EV 227
V
Sbjct: 252 HV 253
>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
Length = 277
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 130/231 (56%), Gaps = 22/231 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD---- 64
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E + +
Sbjct: 13 LRVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGG 72
Query: 65 ---------QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRS 115
+A + +A FS+ DR R +GD+R+ E++ + + A + THL P S
Sbjct: 73 GGGGGGAGGKAEIVVGIVIAGFSSVDRKRHGRGDKRTLELASTVANALAASLHTHLFPHS 132
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLL 167
QI++ + VL DG +A INAATLA DAGIPM D V +C+AG ++ PLL
Sbjct: 133 QINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLL 192
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
DLN+ E+ P +TV L D+V +L ++++ + E ++ + ++GCK
Sbjct: 193 DLNHQEEQE-LPGLTVATLGESDRVAVLVCESRVQVSRLEGMLAVGVDGCK 242
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 129/237 (54%), Gaps = 18/237 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP--REVQNKSQQ--MSD 64
LRLDGRR E+R + A+I A ADGS+ EMGNTKV+ +V GP Q Q+ +S+
Sbjct: 13 LRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVTGPAAESKQGGGQRGGISN 72
Query: 65 QALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
L + E + A FS DR RK K D+++ E+ +R E + HL PRS I I V
Sbjct: 73 DKLAKIDVEINFAGFSGVDR-RKRKTDKKTNEMEHCLRSAFEGVLSLHLYPRSTITIHVH 131
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS----------AGYLNSTPLLDLNYV 172
V+ DG +AC+NAATLAL DAGIPM D + +C+ PLLDLN
Sbjct: 132 VVSQDGSLLAACLNAATLALVDAGIPMTDYLVACTAASSASAEAADNASADDPLLDLNNQ 191
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
E+ P +TV L D V + M++++ E ++ + IEGCK + + +V K
Sbjct: 192 EELE-LPFLTVATLGESDDVAVCVMESRVRMERLESMLAVGIEGCKRMRGILDDVVK 247
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 1/216 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSP GLRLDGRRP E R++ G ++ DGS +G +KV A V+GPRE +K +
Sbjct: 6 EYVSPAGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEA 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ LV CE ++A F+ +R + + S +I + Q + IL P SQI I++
Sbjct: 66 KHDKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ DG + AC+NAA LAL DA + MRD V AG L+ L+DL E + P +
Sbjct: 126 EVLQKDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVI 185
Query: 182 TVGIL-PTLDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
+ L+ ++LP ++ +++ A EG
Sbjct: 186 AAAFTGHDTRNIIWLETASRLPPDSAARLLKCAEEG 221
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 135/228 (59%), Gaps = 7/228 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+++++ EG R+DGR+ E R ++ +GN + DG + FE+GNTK+ A + GP N
Sbjct: 4 VQYINDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGP----N 59
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ ++ ++ LV+C ++ F+ ++ RK D + EIS IR IL L S+I
Sbjct: 60 EYRRPDEKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG ++A +N LAL DAGI ++ +++ S YL + ++D N E ++G
Sbjct: 120 NIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
P++T+ I + + + LL+ DA++P + F+ +++ + C V N ++
Sbjct: 180 SPELTLAIDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMK 227
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 121/213 (56%), Gaps = 2/213 (0%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P +MRQ+ ++G VA A GSA E +TKVI AVYGP S++ ++
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTE--ISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
C++S A F+ R+ +G ++ E +S ++RQT+E+ I H + +S + + V VLQAD
Sbjct: 103 CDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQAD 162
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG + A++AL DAGI + D+VT+CS GY + +LD E+ +G +T+ ++P
Sbjct: 163 GGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMP 222
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+VT + + + ++L +GC V
Sbjct: 223 GSQQVTQWWQEGRFDGQKVAEALELCTDGCGCV 255
>gi|346320011|gb|EGX89612.1| exosome complex exonuclease RRP41 [Cordyceps militaris CM01]
Length = 273
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 18/238 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS----- 63
LR+DGRR E+R+L A I ADGS+ E+G+TKV+ V GP E Q + Q
Sbjct: 13 LRVDGRRWNELRRLHALIRTQDAADGSSYLEIGHTKVMCVVSGPSEQQQQQQAQRRGGQA 72
Query: 64 ----DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
D A V +A FS+ DR ++ + D+R E+ + I + + + TH+ P S I I
Sbjct: 73 NATRDGATVHVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKAFSSNLHTHIFPHSSIAI 132
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNY 171
+ VL DG +A +NA TLAL DAGIPM D + +C+AG +S PLLDLN
Sbjct: 133 SLHVLSQDGSLLAALLNATTLALVDAGIPMTDYIAACTAGSTSSFAAGDDAADPLLDLNT 192
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
E+ P +TV L D+V +L ++++ + FE ++ + ++GCK V ++ V K
Sbjct: 193 QEEQE-LPYLTVATLGGSDRVAVLACESRIQVSRFEGMLVVGVDGCKQVKKFLDSVVK 249
>gi|389623701|ref|XP_003709504.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
gi|351649033|gb|EHA56892.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
Length = 280
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 25/245 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------- 61
LR+DGRR E+R+ A+I A ADGS+ EMG+TKV+ V GP E ++
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 62 ---------MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLM 112
S +A V +A FS+ DR ++ +GD+R E+ + + A + THL
Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------T 164
S I + VL DG +A INAATLA DAGIPM D V +CSAG +S
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192
Query: 165 PLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
PLLDLN E++ P +T L D+V +L ++++ + E ++ +A++GCK V +
Sbjct: 193 PLLDLNQQEETE-LPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREIL 251
Query: 225 REVRK 229
V K
Sbjct: 252 DRVVK 256
>gi|429853450|gb|ELA28524.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 570
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 133/231 (57%), Gaps = 11/231 (4%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E Q + + + A
Sbjct: 317 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPSEPQRRGGAGGQTKDA 376
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V +A FS+ DR ++ + D+R+ E+ I + + A + THL P S I I + VL
Sbjct: 377 AVNVNIVVAGFSSVDRRKRGRNDKRNQELEAAIAKAVAANLHTHLFPHSSISISLHVLSQ 436
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGG 178
DG + +NA+TLAL DAGIPM D + +C+AG ++ PLLDLN E+
Sbjct: 437 DGSLLATLLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQE-L 495
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TVG L D+V +L ++++ + E ++ + ++GCK V ++ V K
Sbjct: 496 PYLTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVK 546
>gi|340924044|gb|EGS18947.1| hypothetical protein CTHT_0055610 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 284
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE-------------- 54
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGTGAGTTGG 72
Query: 55 ------VQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIL 108
S +A V +A FS+ DR R + D+R E+ + + A +
Sbjct: 73 GGAGGAGGGGSGGQGKEAEVVVSIVIAGFSSVDRKRHGRNDKRIIEMQSTVANALSASLH 132
Query: 109 THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL------- 161
THL P SQI I + VL DG +A INAATLA DAGIPM D V +C+AG
Sbjct: 133 THLFPHSQITISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVVACTAGSTSTYAAND 192
Query: 162 -NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
N+ PLLDLN+ E+ P +TV L DKV +L ++++ + E ++ + ++GCK +
Sbjct: 193 ENADPLLDLNHQEEQE-LPWLTVATLGESDKVAVLVCESRVQVSRLEGMLAVGVDGCKQI 251
>gi|440469501|gb|ELQ38610.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae Y34]
gi|440482243|gb|ELQ62753.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae P131]
Length = 280
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 25/245 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------- 61
LR+DGRR E+R+ A+I A ADGS+ EMG+TKV+ V GP E ++
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 62 ---------MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLM 112
S +A V +A FS+ DR ++ +GD+R E+ + + A + THL
Sbjct: 73 TATGGGQGAQSREAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------T 164
S I + VL DG +A INAATLA DAGIPM D V +CSAG +S
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192
Query: 165 PLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
PLLDLN E++ P +T L D+V +L ++++ + E ++ +A++GCK V +
Sbjct: 193 PLLDLNQQEETE-LPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREIL 251
Query: 225 REVRK 229
V K
Sbjct: 252 DRVVK 256
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 1/216 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+VSP GLRLDGRRP E R++ ++ DGS +G +KV A V+GPRE +K +
Sbjct: 6 EYVSPAGLRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEA 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
D+ LV CE ++A F+ +R + + S +I + Q + IL P SQI I++
Sbjct: 66 KHDKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VLQ DG + AC+NAA LAL DA + MRD V AG L+ L+DL E + P +
Sbjct: 126 EVLQKDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVI 185
Query: 182 TVGIL-PTLDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
+ L+ ++LP ++ +++ A EG
Sbjct: 186 AAAFTGHDTRNIIWLETASRLPPDSAARLLKCAEEG 221
>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 262
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR D RRP E+R ++ + +DGS+ G T V +V+GPRE +N+ D+A+
Sbjct: 13 GLRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAV 72
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
V E + ++ G R+ +GD+R EI IRQT E I+THL PRS+I I VQVL AD
Sbjct: 73 VSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG INA TLAL DAGI + D V+S S G PLLDL+ E+S P + + LP
Sbjct: 133 GGILPTSINATTLALIDAGIALLDYVSSISIGLHLLQPLLDLSQPEES-DLPSLVIASLP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ K+TL QM+ +L + FE+++ L +E CK +
Sbjct: 192 SSGKITLAQMETRLHVDRFEEMLTLGVEACKVL 224
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 22/228 (9%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+E+V+ EG R+DGR+ E R ++ +GN ADG A +E+GNTK+++ + GP E++
Sbjct: 4 VEYVNEEGYRIDGRKEDECRLIKISVGNENIFTDADGFAFYELGNTKLLSYIQGPTELKK 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ S ++CE D + EIS IR E IL L S+I
Sbjct: 64 SEEKCS----IKCE---------------TKDSVTNEISAYIRNICENIILLDLYKNSEI 104
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG + A IN LAL DAGI ++ +++CS YL + L+D N +E ++G
Sbjct: 105 NIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQNRILVDGNQLEINSG 164
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
P++T+ I K+ LL+ DA++P + FE +++ ++ C + N ++
Sbjct: 165 APELTMVIELNTHKIILLEFDAEVPIDIFEAMVRTCMDCCVNLGNVMK 212
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Query: 40 MGNTKVIAAVYGPREVQNKSQQM--SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISL 97
MGNTKV+A VYGPR+ +KS +D+A V +MA + +R R TE +
Sbjct: 1 MGNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYAQ 60
Query: 98 VIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157
IR+ E ILT L P S I I + QADGG C+NAA LA+ DAGI + D S +
Sbjct: 61 AIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSLN 120
Query: 158 AGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
GY+++T L D+NYVE G +TV LP D+ TL +++ +P FEDV+ A EGC
Sbjct: 121 VGYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTLTTLNSNIPLELFEDVLDAAKEGC 180
Query: 218 KAVANYIRE 226
K V +++
Sbjct: 181 KQVYAILKD 189
>gi|403349665|gb|EJY74273.1| RNase PH [Oxytricha trifallax]
Length = 252
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-----MS 63
LR++GR+ E+R ++ ++G + GSA+FE+GNTKV+A + GP ++ + Q S
Sbjct: 13 LRMNGRKLLEIRDIKCQLGVMKNTSGSALFEIGNTKVVAFLQGPHQITQRQAQSLGVNQS 72
Query: 64 DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
++ ++ + + NFS + K D + E + +I+ E I L PRSQ+D+ V V
Sbjct: 73 NRGILNVNFFVTNFSAIEHRADVKKDAKMKEFTRMIKSVFEQVIQLDLYPRSQLDLQVFV 132
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTV 183
L++DGG RSA NA ++AL D GI M+D V + +AG L + ++DL Y E+ + +
Sbjct: 133 LESDGGYRSAAFNAVSMALMDGGIAMKDFVVATTAGLLGNVGVIDLIYQEEKKQNCEFVL 192
Query: 184 GILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 233
L K+ + ++ K+ + FE +M ++I+ C +AN +++ + LI
Sbjct: 193 VHLQKAQKIAYVNLNCNKIRLSDFEKLMNISIQSCDQIANTMKKAIRAKLI 243
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 130/231 (56%), Gaps = 11/231 (4%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LR+DGRR E+R+L+A+I ADGS+ E+G+TKV+ V GP E Q + + S A
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V +A FS+ DR + + D+R +E+ + + + + THL P S I I + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGG 178
DG +A +NA TLAL DAGIPM D + +C+AG ++ PLLDLN E+
Sbjct: 133 DGSLLAALLNATTLALVDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQE-L 191
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +T L DKV +L ++++ + E ++ +A++GCK + + V K
Sbjct: 192 PFLTAATLGDSDKVVVLVCESRVQASRLEGLLAVAVDGCKQIRGKLDAVVK 242
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 4/220 (1%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR+DGR P EMR + A+IG + GS+ F++G T+VIA ++GPR+ N+S + A
Sbjct: 9 GLRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD--NRSGD--NAAE 64
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R + A+F+ RR E +++++T E I L P S+I I + V+Q D
Sbjct: 65 IRVTFEYADFAKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQDD 124
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G +SA INAATLAL DAGIPM D V S + + LD E +A P + V I P
Sbjct: 125 GSCQSAAINAATLALIDAGIPMFDFVVSMTVALYDDKCFLDAGRAESNARFPVLEVSIFP 184
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+ ++ + + A++ +++M AI+GCK + +++V
Sbjct: 185 STSEILSMNLTARIEPQASKNLMAAAIDGCKELHAIMQDV 224
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 129/233 (55%), Gaps = 13/233 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS----D 64
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E Q + + D
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCIVTGPSEQQVQRRGGQQAPRD 72
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
A + +A FS+ DR ++ + D+R EI I + + THL P S I I + VL
Sbjct: 73 TAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNLHTHLFPHSSITISLHVL 132
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSA 176
DG +A +NA TLAL DAGIPM D + +C+AG ++ PLLDLN E+
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDYIAACTAGSTSTYAAGDDTADPLLDLNNQEEQE 192
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TV D+V +L ++++ + E ++ + ++GCK V ++ +V K
Sbjct: 193 -LPFLTVATQGDTDQVAVLVCESRVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 244
>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 250
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 131/233 (56%), Gaps = 7/233 (3%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAK--ADGSAVFEMGNTKVIAAVYGPREVQNKS 59
E ++ EG R+DGRR E+R++ +I N +D S +E G TK+I ++ GP + N S
Sbjct: 9 EILNSEGFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIPLLNSS 68
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q Q + C + M+ F T DR ++ K DR TE SL+I +T E+ I + + +SQI I
Sbjct: 69 SQSGIQ--LHCNFRMSPFCTPDRRKRGKNDRFCTENSLIITRTFESAI-SEIYVKSQIII 125
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+ VL+ADGG RSA INA +LAL +AGI M+D+V S + G PL D+ E
Sbjct: 126 NINVLEADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGRIPLYDIVQAEFDVLKT 185
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
++ I T + + + M+ L T ED++ L +E A +I ++ + +L
Sbjct: 186 IMSFAIYSTDENIAPITME--LNTKVDEDILNLLLEHSAAACKHISKILRNIL 236
>gi|402080799|gb|EJT75944.1| exosome complex exonuclease RRP41 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 286
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 126/240 (52%), Gaps = 31/240 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE-------------- 54
LR+DGRR E+R+ A+I A ADGS+ EMGNTKV+ V GP E
Sbjct: 13 LRIDGRRWNELRRCHAQIRTQAAADGSSYLEMGNTKVMCVVTGPSEPTPGQRRTAGNVTA 72
Query: 55 --------VQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEAC 106
S A V +A FS+ DR R+ + D+R E+ + + + +
Sbjct: 73 TGAGGGGGGGGGGAGQSKDAEVVVSIFVAGFSSVDRKRRARSDKRIQELQATLSRALAST 132
Query: 107 ILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--- 163
+ THL P S I + VL DG +A INAA+LA DAGIPM D V +C+AG +S
Sbjct: 133 LHTHLFPHSTITFSLHVLAQDGSLLAALINAASLAAVDAGIPMIDYVAACTAGSTSSYAA 192
Query: 164 -----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
PLLDLN+ E++ P +TV L + D+V +L ++++ + E ++ +A++GCK
Sbjct: 193 GDDSADPLLDLNHQEETE-LPGLTVATLGSSDRVVVLNCESRVQASRLEGMLAVAVDGCK 251
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 6/223 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPRE----V 55
+E SPEGLR+DGRR E+R+ +I + ADGS+ + GN+KV+ V GP E +
Sbjct: 4 LELYSPEGLRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANL 63
Query: 56 QNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRS 115
++ + ++ + F++ +R ++PK DRR EIS+++++ I+ R+
Sbjct: 64 AAGTKLDPNGPVLSLNINYPPFASNERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRT 123
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
IDI + VL DGG + NA TLAL DAGI + D V++ S G + TPLLD+N +E++
Sbjct: 124 AIDINLTVLAMDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLYDQTPLLDMNALEEN 183
Query: 176 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
+T+G++ DK+ L + KLP + E ++ L IEGC
Sbjct: 184 DLSF-ITIGVVGDSDKLNLTLCEDKLPLDKLERLISLGIEGCH 225
>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
Brener]
gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 195
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E++SP GLRLDGRRP E R++ E G V DG G V A+VYGPREV N+ +
Sbjct: 6 EYISPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLES 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ ++ CE ++A F+ G++ R P + + S E+S + + + +L P SQI I
Sbjct: 66 KYNECIITCEVAIAAFA-GEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VL+ DG ++ACINAA LAL DA + MRDIV + + G +N+ ++DL E + P
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRDIVYAQTVGLINAVDVVDLTTEEMRSQCPT 184
Query: 181 VTVGI 185
+ + +
Sbjct: 185 ICIAV 189
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 131/224 (58%), Gaps = 13/224 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS----QQMSD 64
LRLDGRR E+R+L+A+I A ADGS+ EMGNTKV+ V GP E + + Q
Sbjct: 13 LRLDGRRWNELRRLQAQISTQAAADGSSYLEMGNTKVMCTVTGPYEGRRQGGAAGAQRDG 72
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+A + E A FS +R R+ +GD+R+ E+ + Q + + T P S I I + +L
Sbjct: 73 EAKIEVEIGFAGFSGIERKRRGRGDKRTAEMQHTLVQAFASTLHTQRYPHSTISISLHIL 132
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSA 176
DG +AC+NAATLAL DAGIPM D + +C+AG S PLLDLN +E+
Sbjct: 133 SQDGSLLAACLNAATLALVDAGIPMSDYLVACTAGSTASYSANDEQADPLLDLNNLEEQE 192
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
P +TVG L +++++L M++K+ E ++ + ++GCK V
Sbjct: 193 -LPFLTVGCLGQKEEISVLVMESKVQMTRLEAMLAVGVDGCKRV 235
>gi|407849042|gb|EKG03905.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 252
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E++SP GLRLDGRRP E R++ E G V DG G V A+VYGPREV N+ +
Sbjct: 6 EYISPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLES 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ ++ CE ++A F+ G++ R P + + S E+S + + + +L P SQI I
Sbjct: 66 KYNECIITCEVAIAAFA-GEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VL+ DG ++ACINAA LAL DA + MRDIV + + G +++ ++DL E + P
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPT 184
Query: 181 VTVGI 185
+ + +
Sbjct: 185 ICIAV 189
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 127/234 (54%), Gaps = 23/234 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS----- 63
LR+DGRR E+R+ AE+ A ADGS+ EMGNTKV+ + GP EV +M+
Sbjct: 236 LRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGG 295
Query: 64 ---------DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPR 114
A V +A FS+ +R R+ + D+R+ E++ I +T+ A + THL PR
Sbjct: 296 GGGGGGGDAKDAEVIVNIVVAGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPR 355
Query: 115 SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVT--------SCSAGYLNSTPL 166
S I I + VL DG +A INAATLA DAGIPM D V S +A + PL
Sbjct: 356 STITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSSSSYAAADDAADPL 415
Query: 167 LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
LDLN E+ P +TV L D+V L ++++ E ++ +A++GCK V
Sbjct: 416 LDLNLQEEQE-LPGLTVATLGASDRVAALVCESRVQAGRLEGMLAVAVDGCKQV 468
>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
Length = 291
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 133/251 (52%), Gaps = 36/251 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-------NKSQQ 61
LR+DGRR E+R+L A+I ADGS+ FEMG+TKV+ V GP E Q + Q
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72
Query: 62 MS--DQALVRCEYSMANFSTGDRMRKPKGD------------------RRSTEISLVIRQ 101
S D A + +A FS+ DR ++ + D RR+ EI + I +
Sbjct: 73 ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAK 132
Query: 102 TMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161
+ + + THL P S I + + VL DG +A INAATLA+ DAGIPM D + +C+AG
Sbjct: 133 ALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGST 192
Query: 162 NS--------TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+S PLLDLN E+ P +TV L D+V L ++++ + E ++ +
Sbjct: 193 SSYAAGDDSADPLLDLNNQEEQE-LPFLTVASLGDSDRVVALVCESRVQVSRLEGMLVVG 251
Query: 214 IEGCKAVANYI 224
++GCK V ++
Sbjct: 252 LDGCKQVKMFL 262
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGRR E+R + ++ ADG A G T+V +V+GPRE + +SQ
Sbjct: 5 IEILNDGGYRSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQ 64
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ D+A++ E ++ FSTG+R R+ + DRR E++ I+ T E + T L PR+QIDIF
Sbjct: 65 TLHDRAVLNVEVNVLPFSTGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIF 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V V Q DGG ACIN TLAL AG+P+ D V + SAG + LLDL+ +E+ P
Sbjct: 125 VSVQQQDGGLLPACINGTTLALAAAGVPLLDFVCAVSAGVHGAAALLDLSALEE-GDLPH 183
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
V +LP KVTL ++ +L + F +V +LA + + + +R
Sbjct: 184 AAVAVLPRTKKVTLAALETRLHVDRFAEVFRLACDAGQTIHAEMR 228
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 10/228 (4%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPR-EVQNKSQQMSDQAL 67
LR+DGRR E+R++ ++ A ADGS+ FEMGNTK+I V GPR + + + S A
Sbjct: 13 LRVDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKIICTVLGPRQQTRGGGRDQSRSAS 72
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ E +A FS DR ++ + D+R+ E+ I + ILT L P+S I I + VL D
Sbjct: 73 IEVEIGIAGFSGMDRKKRSRTDKRTQEMQYTISSAFASTILTSLYPQSTISIMLHVLSQD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGGP 179
G +AC+NAATLAL DAGIPM+D V +C+ G S PLLDLN +E+ P
Sbjct: 133 GALLAACLNAATLALIDAGIPMKDYVAACTTGSTASYASNDEEADPLLDLNGMEELE-LP 191
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+T+G DK+ +L M+ ++ E ++ + ++GCK V + +V
Sbjct: 192 FLTIGTSGGEDKINVLIMETRVQVARMEAMVTVGLDGCKQVRQLLDQV 239
>gi|407407934|gb|EKF31543.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi
marinkellei]
Length = 252
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 112/185 (60%), Gaps = 2/185 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRRP E R++ E G V DG G + V A+VYGPREV N+ +
Sbjct: 6 EYINPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLSTVCASVYGPREVTNRLEG 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ +V CE ++A F+ G++ R P + + S E+S + + + +L P SQI I
Sbjct: 66 KYNECIVTCEVAIAAFA-GEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VL+ DG ++ACINAA LAL DA + MRDIV + + G +++ ++DL E + P
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPT 184
Query: 181 VTVGI 185
+ + +
Sbjct: 185 ICIAV 189
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 132/235 (56%), Gaps = 15/235 (6%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------M 62
LR+DGRR E+R+L A I ADGS+ EMG+TKV+ V GP E Q ++
Sbjct: 13 LRVDGRRWNELRRLHALIRTQDAADGSSYLEMGHTKVMCVVSGPSEQQQNQKRGGQANAS 72
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D A V +A FS+ DR ++ + D+R E+ + I + + + + TH+ P S I I +
Sbjct: 73 RDGATVNVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKALSSNLHTHIFPHSSISISLH 132
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVED 174
VL DG +A +NA TLAL DAGIPM D + +C+AG +S PLLDLN E+
Sbjct: 133 VLSQDGSLLAALLNATTLALIDAGIPMNDYIAACTAGSTSSFAAGDDLADPLLDLNNQEE 192
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TV L D++ +L ++++ + F+ ++ + I+GCK V ++ V K
Sbjct: 193 QE-LPYLTVATLGDSDRIAVLACESRVQVSRFQGMLVVGIDGCKQVKKFLDSVVK 246
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
Query: 32 ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRR 91
ADG A +E+GNTK+++ + GP E++ + D+ ++C+ ++ F+ D+ +K D
Sbjct: 10 ADGFAFYEIGNTKILSYIQGPTELK----KTDDKCSIKCDVFLSPFNVYDKRKKKTKDNI 65
Query: 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRD 151
+ EIS IR E IL L S+I+IF+ +++ DGG + A IN LAL DAGI ++
Sbjct: 66 TNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAGIAIKY 125
Query: 152 IVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQ 211
+++CS YL + ++D N +E ++G P++T+ I K+ LL+ DA++P + FE ++Q
Sbjct: 126 FISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTHKIILLEFDAEIPIDIFESMVQ 185
Query: 212 LAIEGC 217
I+ C
Sbjct: 186 TCIDSC 191
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 130/237 (54%), Gaps = 14/237 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV-QNKSQQMSDQAL 67
LR DGRR E+R++ ++ A ADGS+ FEMGNTKVI V+GPR+ Q S S +A
Sbjct: 13 LRTDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQARQGGSGGQSREAA 72
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ E +A FS DR R+ K D+R E+ I + + T P S I I + VL D
Sbjct: 73 IDVEIGIAGFSGMDRKRRGKNDKRVQEMQYTISSAFASTVFTTSYPHSTITIVLHVLSQD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGGP 179
G +AC+NAATLAL DAG+PM+D V + + G S PLLDLN VE+ P
Sbjct: 133 GALLAACLNAATLALVDAGVPMKDYVAAVTTGSTASYASNDEEADPLLDLNGVEEQE-LP 191
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA----NYIREVRKFLL 232
T+G DKV +L M+ ++ E ++ + ++GCK V +RE K LL
Sbjct: 192 FFTMGTSTGEDKVNVLVMETRVQVARLESMVSVGLDGCKQVRGILDGIVREQGKKLL 248
>gi|403158112|ref|XP_003307453.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163684|gb|EFP74447.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 292
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 27/256 (10%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEI--GNVAKADGSAVFEMGNTKVIAAVYGPREVQNK 58
+E +S GLRLD RRP E+R + I D A E G TK+I V GPR+
Sbjct: 4 VELLSSGGLRLDNRRPYELRSIDFNILPNPPVGCDSVARVEHGLTKLIGFVSGPRDSVES 63
Query: 59 SQQMSD---------------------QALVRCEYSMANFSTGDRMRKPKGDRRSTEISL 97
++ ++ + S FS+ DR + + D++ +++
Sbjct: 64 NRTVATTLGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKKIGRSDKKFADLAQ 123
Query: 98 VIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157
I+ T E ++ HL PRS IDI+VQVLQ DG A IN TLAL AG+ + D V S S
Sbjct: 124 AIQNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDYVLSVS 183
Query: 158 AGYLN--STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIE 215
G L+ S PLLDL E + P++T+ +LP K+TLLQ+D ++ TFE ++++ +E
Sbjct: 184 VGALSTPSCPLLDLTNSEQT-DLPNLTIAVLPRTQKLTLLQLDTRINILTFESLLEIGLE 242
Query: 216 GCKAVANYI-REVRKF 230
C + + REVR++
Sbjct: 243 ACLVLQLEMDREVRRW 258
>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
Brener]
gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRRP E R++ E G V DG G V A+VYGPREV N+ +
Sbjct: 6 EYINPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLES 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ ++ CE ++A F+ G++ R P + + S E+S + + + +L P SQI I
Sbjct: 66 KYNECIITCEVAIAAFA-GEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VL+ DG ++ACINAA LAL DA + MRDIV + + G +++ ++DL E + P
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDACVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPT 184
Query: 181 VTVGI 185
+ + +
Sbjct: 185 ICIAV 189
>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
Length = 277
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 134/242 (55%), Gaps = 22/242 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------- 61
LR+DGRR E+R++ +I A ADGS+ EMG+TKV+ V GP E +
Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72
Query: 62 ------MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRS 115
S A V +A FS+ DR R+ +GD+R+ E+ + T+ A + THL P S
Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATLHTHLFPHS 132
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLL 167
QI+I + VL DG +A INAATLA DAGIPM D VT+C+AG ++ PLL
Sbjct: 133 QINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGADPLL 192
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
DLN+ E+ P +TV L DKV L ++++ + E ++ + ++GCK V + +V
Sbjct: 193 DLNHQEEQE-LPGLTVATLGESDKVVALVCESRVQISRLEGMLAVGVDGCKQVREILDQV 251
Query: 228 RK 229
K
Sbjct: 252 IK 253
>gi|358399876|gb|EHK49213.1| hypothetical protein TRIATDRAFT_49744 [Trichoderma atroviride IMI
206040]
Length = 274
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 137/240 (57%), Gaps = 19/240 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ---NKSQQMSDQ 65
LR+DGRR ++R+L A+I ADGS+ EMG+TKV+ V GP E Q K S Q
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQKKGTVGSAQ 72
Query: 66 ALVRCEYS-------MANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
A + E + +A FS+ DR R+ + DRR E+ + I++ + A + THL P S I
Sbjct: 73 ATGQKEGASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHTHLFPHSTIT 132
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLN 170
+ + VL DG +A INA TLA+ DAGIPM D +T+C+AG +S PLLDLN
Sbjct: 133 VSLHVLSQDGSLLAALINATTLAVIDAGIPMTDYITACTAGSTSSYAAGDDAADPLLDLN 192
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKF 230
E+ P +TVG+L DKV +L ++++ + E ++ + ++GCK V + + K
Sbjct: 193 TQEEQE-LPYLTVGLLGDSDKVAVLVCESRVQVSRLEGMLVVGVDGCKQVRRLLDGIVKH 251
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 129/218 (59%), Gaps = 1/218 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R DGRR E+R + ++ ADG A G T+V +V+GPRE + +SQ + D+A+
Sbjct: 22 GYRSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAV 81
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ E ++ FSTG+R R+ + DRR E++ I+ T E + T L PR+QIDIFV V Q D
Sbjct: 82 LNVEVNVLPFSTGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQD 141
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG ACIN TLAL AG+P+ D V + SAG + LLDL+ +E+ P V +LP
Sbjct: 142 GGLLPACINGTTLALAAAGVPLLDFVCAVSAGVHGAAALLDLSALEE-GDLPHAAVAVLP 200
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+VTL ++ +L + F +V +LA + + + +R
Sbjct: 201 RTKRVTLAALETRLHVDRFAEVFRLACDAGQTIHAEMR 238
>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 240
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+F+ + R DGR+ E+R++ +G +GS G T+++ + GP NKS +
Sbjct: 4 DFLVLQEFREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGP---HNKSTR 60
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ + +Y++A FS DR + K D+ E + +R + E+ ILT + +IDI V
Sbjct: 61 RESEGFLNVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIV 120
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
V+QADG +S+ NA +LAL DAGIPM+D S + LNS LLD Y E ++
Sbjct: 121 SVIQADGSAKSSIFNAISLALMDAGIPMKDFTVSSTVISLNSEILLDATYQEQKKASAEL 180
Query: 182 TVGILPTLDKVTLLQM-DAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+ LP D+V ++M +K+ +++ ++A++GCK + +R
Sbjct: 181 IISYLPRSDQVDFMEMKSSKISQQDTKEMCKIAVDGCKQMYQILR 225
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R D + P +L G V++A GSA E+ NTK+I AVYGPREV K Q+ + QA V
Sbjct: 1 MRKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKK-QEFNIQATV 59
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
CE A FS R R + D + E S +I Q ++ + P+SQIDIF+ VLQ DG
Sbjct: 60 ACELKFATFSCRRRRRHIQ-DSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDG 118
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA-----------G 177
I AA++AL D+GI + D+ C + L+D Y+E+
Sbjct: 119 SVLGGAITAASVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLEEEGRLNNEEEDEIVT 178
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+VT+ +LP+L++V+ L M+ +L ++ + +++ +EGC + +RE
Sbjct: 179 NANVTIALLPSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRE 227
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 117/219 (53%), Gaps = 12/219 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS---DQ 65
LR+DGRR E+R+L A+I ADGS+ EMG+TKV+ V GP E Q + D
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 66 ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
A + +A FS+ DR ++ + D+R EI I + + + THL P S I I + VL
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL--------NSTPLLDLNYVEDSAG 177
DG +A INA TLAL DAGIPM D + +C+AG N+ PLLDLN E+
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDYIAACTAGSTSTYAAGDDNADPLLDLNNQEEQE- 191
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
P +TV D+V +L ++++ + E L G
Sbjct: 192 LPFLTVATHGDTDRVAVLVCESRVQVSRLEGQAVLGSSG 230
>gi|367053159|ref|XP_003656958.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
gi|347004223|gb|AEO70622.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
Length = 264
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 122/236 (51%), Gaps = 41/236 (17%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------- 61
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E +
Sbjct: 13 LRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGIGGGGAG 72
Query: 62 ---------MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLM 112
S +A V +A FS+ DR R+ +GD + THL
Sbjct: 73 GGGSGAGGGQSKEAEVVVSIVIAGFSSVDRKRRGRGDN----------------LHTHLF 116
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------T 164
P SQI + + VL DG +A INAATLA DAGIPM D V +C+AG ++
Sbjct: 117 PHSQITVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGAD 176
Query: 165 PLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
PLLDLN+ E+ P +TV L D+V +L ++++ + E ++ + ++GCK V
Sbjct: 177 PLLDLNHQEEQE-LPGLTVATLGASDRVAVLVCESRVQVSRLEGMLAVGVDGCKQV 231
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 34/229 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE---------VQNKS 59
LR+DGRR E+R++ A+I A ADGS+ EMG+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
S A V +A FS+ DR R+ +GD + THL P S I+I
Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRRGRGDN----------------LHTHLFPHSTINI 116
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNY 171
+ VL DG +A INAATLA DAGIPM D V +C+AG ++ PLLD+N+
Sbjct: 117 SLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNH 176
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
E+ P +TV L D+V +L ++++ + E ++ + ++GCK V
Sbjct: 177 QEEQE-LPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQV 224
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 136/234 (58%), Gaps = 19/234 (8%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-----NVAKADGSAVFEMGNTKVIAAVYGPREV 55
+E++S EGLR+DGRRP+E+R + G ++ DG A G TKV A + GP ++
Sbjct: 4 IEYISLEGLRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKVQAFINGPTDI 63
Query: 56 -QNKSQQMSDQA----LVRCEYSMANFSTGDRMRKPKGDRR---STEISLVIRQTMEACI 107
++K+++ + A +RCE + + RK G R + EIS + T E I
Sbjct: 64 GRSKTKEGFETADSPVEIRCEVCIPS------ERKSMGHRNNDATVEISRAVVGTFEPVI 117
Query: 108 LTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL 167
++HL S I IFV VL+ADGG ++ INA +AL DAGI M+DI+ +C+A LN T L+
Sbjct: 118 ISHLYKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNETLLI 177
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
D N +E +A ++T+ + + +++ + + +K P ++ ++++ AI+G + A
Sbjct: 178 DPNQLEINASIMELTLALSVSNEELIHIDLRSKYPIKSYAEIIEKAIKGSERFA 231
>gi|358386690|gb|EHK24285.1| hypothetical protein TRIVIDRAFT_31322 [Trichoderma virens Gv29-8]
Length = 275
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 133/242 (54%), Gaps = 27/242 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------- 61
LR+DGRR ++R+L A+I ADGS+ EMG+TKV+ V GP E Q Q+
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTGGGG 72
Query: 62 ----MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
D A + +A FS+ DR R+ + DRR E+ + I++ + A + HL P S I
Sbjct: 73 QAGGQKDGASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHVHLFPHSTI 132
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDL 169
+ + VL DG +A INA TLAL DAGIPM D +T+C+AG +S PLLDL
Sbjct: 133 TVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITACTAGSTSSYAAGDDSADPLLDL 192
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
N E+ P +TV L DKV +L ++++ + E ++ + ++GC R+VRK
Sbjct: 193 NTQEEQE-LPYLTVATLGDSDKVAVLVCESRVQVSRLEGMLVVGVDGC-------RQVRK 244
Query: 230 FL 231
L
Sbjct: 245 LL 246
>gi|340522690|gb|EGR52923.1| predicted protein [Trichoderma reesei QM6a]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 134/254 (52%), Gaps = 39/254 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ------- 61
LR+DGRR ++R+L A+I ADGS+ EMG+TKV+ V GP E Q Q+
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQEAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTTGGG 72
Query: 62 ----------------MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEA 105
D A + +A FS+ DR R+ + DRR E+ + I++ + A
Sbjct: 73 GGGGGAAAAGGALGAGQKDAASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAA 132
Query: 106 CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-- 163
+ THL P S I + + VL DG +A INA TLAL DAGIPM D +T+C+AG +S
Sbjct: 133 NLHTHLFPHSTITVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITACTAGSTSSYA 192
Query: 164 ------TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
PLLDLN E+ P +TV L DKV +L ++++ + E ++ + ++GC
Sbjct: 193 AGDDSADPLLDLNTQEEQE-LPFLTVATLGDSDKVAVLVCESRVQVSRLEGMLVVGVDGC 251
Query: 218 KAVANYIREVRKFL 231
R+VR+ L
Sbjct: 252 -------RQVRRLL 258
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 4/217 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ +G R DGRRP E+R + G V++A GSA EM NTKVI A+YGPRE + Q+
Sbjct: 29 LIRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRR-QEF 87
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
S + + CE+ A FS R RK D E S ++ Q +E + P++Q+DI++
Sbjct: 88 SMKGRLTCEFKFAPFSCIYR-RKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYIT 146
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL--NYVEDSAGGPD 180
VL+ DG SA I A++AL AGI M D+V++C+ ++ L+D + S+
Sbjct: 147 VLENDGSALSAGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEIHSSSASGH 206
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
V ILP+L+ V+ L + +L + + IEGC
Sbjct: 207 TMVAILPSLNVVSGLVQEGELTQDAATKALSSCIEGC 243
>gi|353234637|emb|CCA66660.1| probable exosome complex exonuclease rrp41 [Piriformospora indica
DSM 11827]
Length = 277
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 19/245 (7%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-----------------DGSAVFEMGNT 43
+E ++ G R DGR E+R L +G+ ++ DGSA+ G T
Sbjct: 5 VEILNAGGYRSDGRTQYELRSLEIILGDSSRPRTINLHDSASNPHPNAPDGSAIVGHGLT 64
Query: 44 KVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRST-EISLVIRQT 102
V A V+GPRE + + + D+A + + +M FS G R+ + E+ I T
Sbjct: 65 VVSARVFGPREPLLRREAIHDRAKLSVQVAMLPFSGGMAGRRRGRGDKRLLELGAAIEST 124
Query: 103 MEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN 162
E+ + T L PRSQIDI V++ Q DGGT A IN+ TLAL DAG+ M D V + SAG +
Sbjct: 125 FESVVQTGLYPRSQIDIVVEIHQQDGGTLQAAINSVTLALTDAGVAMYDQVVAVSAGLHS 184
Query: 163 STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
+ LLDL + E++ P +TV ++P KVTLL M+A+L FE V ++A E + +
Sbjct: 185 TAVLLDLTHHEEN-DMPHLTVAVMPRSGKVTLLNMEARLHVTRFEAVFKIACEAVTVIRD 243
Query: 223 YIREV 227
+ V
Sbjct: 244 EMNSV 248
>gi|453086483|gb|EMF14525.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 371
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 19/241 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS-----QQMS 63
LR+DGRR E+R + ++ A ADGS+ FEMGNTKVI V GPR+ Q +S + +
Sbjct: 130 LRVDGRRWNELRCISGQMSTQAAADGSSYFEMGNTKVICTVVGPRQ-QTRSGGGGGRDQT 188
Query: 64 DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
+A + E +A FS DR ++ + D+R+ E+ I + + T L P+S I I + V
Sbjct: 189 KEASIEVEIGIAGFSGMDRKKRSRSDKRTQEMQYTISSAFASTVFTSLYPQSTISIVLHV 248
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDS 175
L DG +AC+NAATLAL DAG+PM+D V +C+ G S PLLDLN +E+
Sbjct: 249 LSQDGALLAACLNAATLALIDAGVPMKDYVAACTVGSTASYASNEEEADPLLDLNGLEEQ 308
Query: 176 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANY----IREVRKFL 231
P +TVG D V +L M+ ++ + ++ + ++GCK + +RE K L
Sbjct: 309 E-LPFMTVGTSGGEDMVNVLIMETRVQMARLQAMLSVGLDGCKQIRQLLDGIVREHGKKL 367
Query: 232 L 232
L
Sbjct: 368 L 368
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 5/215 (2%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRRP E R+L E G ++ DG G + V A VYGPREV N+
Sbjct: 6 EYINPAGLRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDG 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ + C+ +A F+ R + + R S +IS + + +L P SQI I +
Sbjct: 66 KYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VL+ DG ++ACINAA LAL DA I MRD+V + + G + ++DL E + P +
Sbjct: 126 EVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSI 185
Query: 182 TV---GILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+ G PT + ++ +++L ++++A
Sbjct: 186 CITVQGHDPT--NIVWMESNSRLAPEVITRLVKVA 218
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 11/236 (4%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ + G R DGR+ ++R + + G V++A GSA EMGNTKV+ +VYGPRE+ + +
Sbjct: 26 LTLLDSSGKRHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARR-K 84
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ + + CE+ A +S R R+ D + S ++ + + + H P+S +D+F
Sbjct: 85 DFTYKGQINCEFRFAQYSCQIR-RQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVF 143
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA---- 176
V VL+ DGG ++ I A LAL DAGI M D+V CS ST LLD Y E++A
Sbjct: 144 VYVLENDGGALASAITTAGLALADAGIDMYDVVIGCSLRQDGSTCLLDPTYREETAPVGA 203
Query: 177 -----GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
G +T+ +P L +V L D L T +++ + C + +++V
Sbjct: 204 ENIDRGFGRMTLAFMPALQQVAALVQDGDLDAATVVSDLRVLMNACHEIYPLVQDV 259
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 252
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 118/215 (54%), Gaps = 5/215 (2%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRRP E R+L E G ++ DG G + V A VYGPREV N+ +
Sbjct: 6 EYINPAGLRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEG 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ + C+ +A F+ R + + R S +IS + + +L P SQI I +
Sbjct: 66 KYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VL+ DG ++ACINAA LAL DA I M+D+V + + G + ++DL E + P +
Sbjct: 126 EVLKQDGSDKAACINAACLALIDASIAMKDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSI 185
Query: 182 TV---GILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+ G PT + ++ +++L ++++A
Sbjct: 186 CITVQGHDPT--NIVWMESNSRLAPEVITRLVKVA 218
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 26/247 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ----NKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP E + S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F++ DR R+ G DR+S I+ +R ++ + T+L P S I I V V
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY----------LNST--PLLDLNY 171
L +DG +A +NA TLAL DAGIPM ++ C+AG +N T PLLD++
Sbjct: 134 LSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLDPLLDVSL 193
Query: 172 VED---------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
E+ + P V KV++L MD+K+ + E ++ + ++GCK V
Sbjct: 194 PEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETMLAVGVDGCKQVRE 253
Query: 223 YIREVRK 229
+ V K
Sbjct: 254 ILDSVIK 260
>gi|398409290|ref|XP_003856110.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
gi|339475995|gb|EGP91086.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
Length = 250
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 133/236 (56%), Gaps = 14/236 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR+DGRR E+R+++ ++ A ADGS+ FEMGNTKV+ V+GPR+ +S + +A +
Sbjct: 13 LRIDGRRWNELRRIQGQMSTQAAADGSSYFEMGNTKVMCTVHGPRQ-SARSGGGTREATI 71
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
E +A FS +R ++ + D+R+ E+ I + T P S I I + VL DG
Sbjct: 72 EVEIGVAGFSGTERKKRARADKRTQEMQHSISSAFSDTVFTAFYPSSTITIVLHVLSQDG 131
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVEDSAGGPD 180
+AC+NAATLAL DAG+PM D + +C+ G S PLLDLN E+ P
Sbjct: 132 ALLAACLNAATLALVDAGVPMTDYIAACTTGSTASYASNDEDADPLLDLNGAEELE-LPF 190
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN----YIREVRKFLL 232
+T+G DKV +L M+ ++ E ++ + ++GCK V + +RE + LL
Sbjct: 191 LTMGTSGGEDKVNVLIMETRVQATRLESMVSVGLDGCKQVRSILDGIVREHGRRLL 246
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 11/236 (4%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ + G R DGR+ ++R + + G V++A GSA EMGNTKV+ +VYGPRE+ + +
Sbjct: 26 LTLLDSSGKRHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARR-K 84
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ + + CE+ A +S R R+ D + S ++ + + + H P+S +D+F
Sbjct: 85 DFTYKGQINCEFRFAQYSCQIR-RQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVF 143
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA---- 176
V VL+ DGG ++ I A LAL DAGI M D+V CS ST LLD Y E++A
Sbjct: 144 VYVLENDGGALASAITTAGLALADAGIDMYDVVIGCSLRQDGSTCLLDPTYREETAPVGA 203
Query: 177 -----GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
G +T+ +P L +V L D L T ++ + C + +++V
Sbjct: 204 ENIDRGFGRMTLAFMPALQQVAALVQDGDLDAATVVSDLRALMNACHEIYPLVQDV 259
>gi|340057336|emb|CCC51681.1| putative RRP41p homologue [Trypanosoma vivax Y486]
Length = 252
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 2/185 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRRP E R+L E G G G + V A VYGP EV N+
Sbjct: 6 EYINPAGLRLDGRRPHESRRLTMEFGKSPDCGGRCTVTAGLSHVCATVYGPCEVTNRLDT 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ ++ CE +A F+ G+R R+P + + S EIS + + + + P SQI I
Sbjct: 66 KHSEVVITCEVVVAAFA-GERRREPQRRSKLSEEISTAVLEVARSTVFLSYYPNSQIHIC 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VL+ DG ++ACINAA LAL DA + MRDI+ + + G++ ++DL E + P
Sbjct: 125 IEVLRQDGNDKAACINAACLALVDANVAMRDIIYAQTVGFMEGVDVVDLTTEELHSYCPF 184
Query: 181 VTVGI 185
+ + +
Sbjct: 185 ICICV 189
>gi|342184387|emb|CCC93869.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 252
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+V+P GLRLDGRRP E R+L E G ++ DG G + V A VYGPREV ++
Sbjct: 6 EYVNPAGLRLDGRRPNEPRRLTLEFGKISGCDGCCTLTTGLSHVCATVYGPREVSSRLDG 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ + C+ +A F+ R + R S EIS + + +L P SQI I V
Sbjct: 66 KYNEVTITCDVVVAAFAGERRREHQRRSRLSEEISASVLDVARSVVLLSQYPNSQIHICV 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
++L+ DG ++ACINAA LAL DA I MRD+V + + G ++ ++DL E + P V
Sbjct: 126 ELLKQDGNDKAACINAACLALIDASIAMRDVVYALTVGLIDGLEIVDLTTEEIHSQCPTV 185
Query: 182 TVGILPTLDKVTLLQMDAK 200
+ + D +++ M++
Sbjct: 186 CIAV-QGHDPASIIWMESN 203
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 5/215 (2%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRR E R+L E G ++ DG G + V A VYGPREV N+
Sbjct: 6 EYINPAGLRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDG 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++ + C+ +A F+ R + + R S +IS + + +L P SQI I +
Sbjct: 66 KYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICI 125
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
+VL+ DG ++ACINAA LAL DA I MRD+V + + G + ++DL E + P +
Sbjct: 126 EVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSI 185
Query: 182 TV---GILPTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+ G PT + ++ +++L ++++A
Sbjct: 186 CITVQGHDPT--NIVWMESNSRLAPEVITRLVKVA 218
>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
gi|347441428|emb|CCD34349.1| similar to exosome complex exonuclease RRP41 [Botryotinia
fuckeliana]
Length = 261
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP------REVQNK-SQQ 61
LRLDGRR E+R+L A+I +DGS+ MGNT+V+ V GP R + S
Sbjct: 13 LRLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGSNN 72
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++A VR E S A F+ DR + + D+R E+S + T +LT L S I I +
Sbjct: 73 AGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILISL 132
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVE 173
+L DG SA INA+TLAL DAGIPM + +C+AG +S PLLDLN E
Sbjct: 133 HILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLGE 192
Query: 174 DSAGGPDVTVGILPT--LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ P +TV D V L M+ ++ E ++ + ++GCK V
Sbjct: 193 EQE-LPFLTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQV 240
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 29/250 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP----REVQNKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G DR+S+ I+ ++R ++ + THL P S I I V V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL-----------DLNYV 172
L ADG +A +NA TLAL DAGIPM ++++C++G S L +
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTLRDPRNDFLDPLLDLSL 193
Query: 173 EDSAGGPDVTVGILPTL-------------DKVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
+ P +TVG + KV+++ MD+K+ E ++ + I+GCK
Sbjct: 194 PEEQELPFLTVGTTTAIPVGEDAMDDDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGCKQ 253
Query: 220 VANYIREVRK 229
+ + V K
Sbjct: 254 IREILEGVIK 263
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 29/250 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP----REVQNKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G DR+S+ I+ ++R ++ + THL P S I I V V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-----PLLDLNYVEDSAGG 178
L ADG +A +NA TLAL DAGIPM ++++C++G S P D
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLDLSL 193
Query: 179 ------PDVTVGILPTL-------------DKVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
P +TVG + KV+++ MD+K+ E ++ + I+GCK
Sbjct: 194 PEEQELPFLTVGTTTAIPVGEDAMDDDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGCKQ 253
Query: 220 VANYIREVRK 229
+ + V K
Sbjct: 254 IREILEGVIK 263
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 29/250 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP----REVQNKSQQMSD 64
LRLDGRR E+R L A+I + GS+ MGNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G DR+S+ I+ ++R ++ + THL P S I I V V
Sbjct: 74 GAIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-----PLLDLNYVEDSAGG 178
L +DG +A +NA TLAL DAGIPM ++++C++G S P D
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLDLSL 193
Query: 179 ------PDVTVGILPTL-------------DKVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
P +TVG + KV++L MD+K+ E ++ + I+GCK
Sbjct: 194 PEEQELPFLTVGTTTAIPVGEDAMDDDEDDMKVSMLVMDSKVHCTYLETMLAVGIDGCKQ 253
Query: 220 VANYIREVRK 229
+ + V K
Sbjct: 254 IREILEGVIK 263
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 29/250 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP----REVQNKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G DR+S+ I+ ++R ++ + THL P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-----PLLDLNYVEDSAGG 178
L ADG +A +NA TLAL DAGIPM ++++C++G S P D
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLDLSL 193
Query: 179 ------PDVTVGILPTL-------------DKVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
P +TVG + KV+++ MD+K+ E ++ + I+GCK
Sbjct: 194 PEEQELPFLTVGTTTAIPVGEDAMDEDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGCKQ 253
Query: 220 VANYIREVRK 229
+ + V K
Sbjct: 254 IREILEGVIK 263
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 19/235 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP----REVQNKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G D++S+ ++ ++R ++ + THL P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN---------YVED 174
L +DG +A +NA TLAL DAGIPM ++ C+A STP N + +
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTA----STPRDPNNDTLDPLLDLSLPE 189
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P +TVG + KV +L MD+K+ E ++ + I+GCK + + V K
Sbjct: 190 EQELPFLTVGTTTAM-KVAMLTMDSKVHCTYVETMLAVGIDGCKQIREILEGVIK 243
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 10/233 (4%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
++ G R DGR+ ++R + + G V++A GSA EMGNTKV+ +VYGPRE+ + +
Sbjct: 27 LLNKSGKRHDGRQFGDVRPIFLKTGVVSQAKGSAYIEMGNTKVVCSVYGPREIARR-KDF 85
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + + CE+ A +S R R+ D + S ++ + + + H P+S +D+FV
Sbjct: 86 TFKGQINCEFRFAQYSCPIR-RQHLNDGEALHYSQLLEKALAPVVCLHKFPKSTVDVFVL 144
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVE--------D 174
V++ DGG + I A LAL DAGI M D+V CS ST L+D +Y E D
Sbjct: 145 VIENDGGALACAITTAGLALADAGIDMYDVVVGCSLRQDGSTCLIDPSYNEEVAPVEAKD 204
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+T+G +P L +VT L D +L + M+ I + +++V
Sbjct: 205 DLSFGRMTLGFMPALQQVTALVQDGELDAASVVSDMKALIAASHQIYPLVQDV 257
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 10/233 (4%)
Query: 4 VSPEGLRLDGRR--PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
VSP+G R DGRR ++R + G V++A GSA E GNTK++ VYGPRE + K +
Sbjct: 28 VSPQGPRADGRRRDQVDVRPVFVRCGLVSQAKGSAYIEAGNTKLMCCVYGPRETERKDET 87
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ + A FS +R +G + + S +++++++ + H PRSQI++ +
Sbjct: 88 DMKCGRLTTDMRFAPFSCPERGSWIQGSQEK-DFSTMLQESLQPAVCLHKYPRSQIEVNM 146
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD- 180
VL+ G + I A+LAL DAGI M D+V CS ++ + D E++ GPD
Sbjct: 147 MVLENSGSVLAHAITCASLALADAGIEMYDLVLGCSLRQNGASYVADPTSAEENDRGPDQ 206
Query: 181 ------VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+TV LP+L++++ LQ D ++ +T ++ IEGC + +++V
Sbjct: 207 SRNQGSLTVAFLPSLNQISGLQSDGEMSEDTLTAGVRTCIEGCYKLYPLVQQV 259
>gi|342319558|gb|EGU11506.1| Hypothetical Protein RTG_02676 [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 136/299 (45%), Gaps = 81/299 (27%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEI----------------GNVAKADGSAVFEMGNTKV 45
+ ++P LRLD R P E+R L +I AKADG A+ G T V
Sbjct: 6 QLLTPSALRLDSRLPLELRSLDFQILPSPPSPSTSSSYAATHPPAKADGYALASHGLTTV 65
Query: 46 IAAVYGPREVQNKSQQMS---------------------DQALVRCEYSMANF------- 77
++V+GPRE Q S D+ V E +A +
Sbjct: 66 SSSVFGPREPQRTGPWSSTGTGQSAGGGVGQAAGGQQKGDRGSVNVEVGVAGWGERVGQG 125
Query: 78 -STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACIN 136
S+ +R+ DRR+ E++ ++ T E +L HL PRS IDI++Q+L+ DG A IN
Sbjct: 126 GSSEGGLRRGGKDRRTIELAAAVKNTFEPVLLLHLYPRSSIDIYLQILENDGSVLQAAIN 185
Query: 137 AATLALQDAGIPMRDIVTSCS------------------------AGYLNS--------- 163
A +LAL AG+P+ D V S S A + NS
Sbjct: 186 ATSLALISAGLPLSDYVCSLSLASYPSIPPLGPPQIPPFDLVTPAAAHTNSNDPTRTGGS 245
Query: 164 --TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
T +LDL E++A P++T+ +LP KV+L+ ++ +L N FE++++ +EG K V
Sbjct: 246 GSTTILDLLAAEETAL-PNLTIAVLPRSGKVSLINLETRLGVNRFEELLKWGVEGSKVV 303
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 29/250 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ----NKSQQMSD 64
LRLDGRR E+R +A+I + GS+ MGNT ++ +V+GP E + S
Sbjct: 14 LRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSS 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G DR+S+ ++ +R ++ + T+L P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLLDLN---------YV 172
L +DG +A +NA TLAL DAGIPM ++ C+AG STP N +
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPHNDQLDPLLDLSL 193
Query: 173 EDSAGGPDVTVGILPTLD-------------KVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
+ P +TVG ++ KVT+L MD+K+ + E ++ + I+GCK
Sbjct: 194 PEEQELPFLTVGTTSSIPVGENAMDTDEEDMKVTMLNMDSKVHCSYIETMLAVGIDGCKQ 253
Query: 220 VANYIREVRK 229
+ + V K
Sbjct: 254 IREIMEGVIK 263
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 30/250 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT ++ V+GP E + +A+V
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSAT-EAVV 72
Query: 69 RCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ ++A F+ DR R+ G DR+ST++S ++ ++ + T L P S I + V VL +D
Sbjct: 73 DVDVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLLDLNYVEDSAGG------- 178
G +A INA TLAL DAGIPM ++ C+AG STP E+S
Sbjct: 133 GSLFAAAINACTLALVDAGIPMPGLLCGCTAGVSGSASTPRDPSASSEESLDPLLDLSLP 192
Query: 179 -----PDVTVGILPTLD--------------KVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
P +T+G L KV++L M+ + T+ + ++ + I+GCK
Sbjct: 193 EEQELPFITIGTTTPLPAASAAAAEDDVDDMKVSVLHMETRAHTSYLDAMLAVGIDGCKQ 252
Query: 220 VANYIREVRK 229
+ + V K
Sbjct: 253 IREILEGVIK 262
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 129/248 (52%), Gaps = 33/248 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ----NKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP E + S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G D++S+ I+ +R ++ + T+L P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--TPLLDLN---------YV 172
L ADG +A INA TLAL DAGIPM ++ C+AG S TP N +
Sbjct: 134 LSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPRNDELDPLLDLSL 193
Query: 173 EDSAGGPDVTVGILPTLD-------------KVTLLQMDAKLPTNTFEDVMQLAIEGCKA 219
+ P +TVG ++ KV++L MD+K+ E ++ + I+GC
Sbjct: 194 PEEQELPFLTVGTTTSVPVGENAMDDDEEDMKVSMLNMDSKVHCTYVETMLAVGIDGC-- 251
Query: 220 VANYIREV 227
N IRE+
Sbjct: 252 --NQIREI 257
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Query: 10 RLDGRRPT--EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
RLD R + EMR+ ++G V+ A GSA E+G T+V+ AVYGPR ++ S
Sbjct: 26 RLDKSRTSSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQ 85
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ C+ A F+ R+ D E+S ++ + + ++ H +P+ I +FV +L+ D
Sbjct: 86 LVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDD 145
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG +A +N A+LAL DA + M D+VT+ SAG +N + +LD + E+ G + + +P
Sbjct: 146 GGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMP 205
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
++ +VT + K+ ++ + L + C V
Sbjct: 206 SMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGV 238
>gi|358059015|dbj|GAA95196.1| hypothetical protein E5Q_01851 [Mixia osmundae IAM 14324]
Length = 290
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 133/255 (52%), Gaps = 30/255 (11%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKA---DGSAVFEMGNTKVIAAVYGPRE---VQ 56
++ LRLD RRP E+R + + +V K DGSA E G T+V +V GPRE +
Sbjct: 6 LLTSSNLRLDSRRPLEVRPITCTL-DVLKGLEIDGSASVEQGLTRVSVSVCGPREPRAAR 64
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
D+ ++ E A FS DR ++ + DRR+ E++ I+ T E I+ L PR+Q
Sbjct: 65 GAGNARQDRVVINVEIQTATFSGVDRRKRGRNDRRTVEMASSIKNTFEPVIMGQLYPRAQ 124
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
IDI+V +LQ DGGT SA INA +LAL AGI M + S S L+ TPLLD E+S
Sbjct: 125 IDIYVIILQQDGGTLSAAINATSLALSHAGIAMISPIASISVACLHDTPLLDPCGQEESE 184
Query: 177 GGPDVTVGILPT----------------------LDKVTLLQMDAKLPTNTFEDVMQLAI 214
P +TV L T L K+TL+ ++++L T+ FE +M+L
Sbjct: 185 -LPFLTVACLATRPIEMLDGEARDDAMEGDEEDRLGKLTLVTLESRLSTDRFEGMMRLGQ 243
Query: 215 EGCKAVANYIREVRK 229
+ C + + V +
Sbjct: 244 QACVVIGQELERVTR 258
>gi|443919506|gb|ELU39651.1| exosome component 4 [Rhizoctonia solani AG-1 IA]
Length = 296
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 114/214 (53%), Gaps = 19/214 (8%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ G R DGR+ E+R + E+ ADGSA G T V V+GPRE +N+SQ
Sbjct: 4 VEIINDGGYRADGRKARELRSITIELSPHPTADGSATVSHGLTTVNVCVFGPREAKNRSQ 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
M D+AL+ E S A G T +SL + C R++
Sbjct: 64 TMHDKALINVEISEAPGGVG------------TNVSL--KADPRICCFYSRNIRAR---- 105
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
VLQ DGG INAATLAL DAGI + D V +C+A +++T LLDL E+S P+
Sbjct: 106 RPVLQQDGGVLQTAINAATLALIDAGIALTDYVCACTAACIDTTGLLDLTNTEES-DLPN 164
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAI 214
+T+ +LP +VTL+ M+ +L F+ + +LA+
Sbjct: 165 LTLAVLPRSKRVTLVTMETRLHVERFDQIFKLAL 198
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 3/188 (1%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R+DGRRP E+R++ + G+ +DG GNTKVIA+V GP + K D A
Sbjct: 1 GRRVDGRRPNELRRVHCQFGS-GNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGAT 59
Query: 68 VRCEYSMANF--STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+ C+++ F ++G+R + DR + + S I + + T P SQIDIF++V+Q
Sbjct: 60 IICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
+DG + +NA TLAL DAGI M +V++ + G S DL E++ +TV
Sbjct: 120 SDGSEFACAVNATTLALTDAGIEMHYLVSAATVGLWGSRVFADLCRFEENPRLSQLTVVC 179
Query: 186 LPTLDKVT 193
LP + +++
Sbjct: 180 LPDIHQLS 187
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Query: 10 RLDGRRPT--EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
RLD R + EMR+ ++G V+ A GSA EMG T+V+ AVYGPR ++ S
Sbjct: 26 RLDKTRGSSDEMRRPFMQLGAVSGAAGSAYVEMGRTRVVCAVYGPRTDTRARREFSKDGQ 85
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ C+ A F+ R+ D E+S ++ + + ++ H +P+ + +FV VL+ +
Sbjct: 86 LVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIVSVFVTVLEDE 145
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG +A IN A+LAL DA + M D+VT+ SAG +N + +LD + E+ G + + +P
Sbjct: 146 GGVFAAAINCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMP 205
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
++ +VT + ++ ++ + L + C V
Sbjct: 206 SMGRVTYMLQAGQIHHTQLQEAVDLCTDACTGV 238
>gi|378730426|gb|EHY56885.1| hypothetical protein HMPREF1120_04949 [Exophiala dermatitidis
NIH/UT8656]
Length = 259
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGRR E+R++ A I +DGS++ MGNT V+ V GPRE + Q+ + A V
Sbjct: 14 LRQDGRRWNELRRITASISTQPSSDGSSLLTMGNTMVLCTVTGPRE--GRGQRDNTNATV 71
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
E ++A F+ DR R+ K D+R E+ + ++ + THL PRS I I + VL DG
Sbjct: 72 ETEINVAPFAQMDRRRRIKNDKRIQELQSTVSSAFQSHLFTHLYPRSTISISLHVLSLDG 131
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST--------PLLDLNYVEDSAGGPD 180
+AC+NAA+LAL DAGIPM I+ + S+G + P+LDLN E+ P
Sbjct: 132 ALLAACLNAASLALVDAGIPMPSILAAISSGSVTPADDSSVRPEPILDLNTAEEQE-LPF 190
Query: 181 VTVGILP-----TLDKVTLLQMDAKL----PTNTFEDVMQLAIEGCKAVANYIREV 227
+++ + DKV++L M+++ P + E +M ++GCK V + EV
Sbjct: 191 LSIATVTGQPPGAEDKVSVLMMESRCQIGGPNSKLESMMVTGVDGCKQVRRTMEEV 246
>gi|156320322|ref|XP_001618165.1| hypothetical protein NEMVEDRAFT_v1g225439 [Nematostella vectensis]
gi|156197791|gb|EDO26065.1| predicted protein [Nematostella vectensis]
Length = 122
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQADGG ACINA TLAL +AGIP++D V++C+ ++N TPL+D+NY+E+S GGP +T
Sbjct: 1 VLQADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLT 60
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
+ ILP DK+ L QMD++L + + V+ LA++GCK + Y+ R L
Sbjct: 61 LAILPKSDKIVLFQMDSRLHMDNMDKVLALAMKGCKDI--YVLLHRTIL 107
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 6/190 (3%)
Query: 36 AVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEI 95
+ E GNTKVI +V GP E + S + S++A V + A FS DR ++ K D+R E+
Sbjct: 69 SYVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKRGKSDKRVLEM 128
Query: 96 SLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTS 155
+ +T +LT L PRS++ I + +L DG + C+NAATLAL DAG+PM D VT+
Sbjct: 129 QSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDYVTA 188
Query: 156 CS-AGYLN----STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVM 210
C+ A Y N PLLD++ E+ P +T+ + DK++LLQ++ K+ E ++
Sbjct: 189 CTVASYTNPDESGEPLLDMSSAEE-MDLPGITLATVGRSDKISLLQLETKVRLERLEGML 247
Query: 211 QLAIEGCKAV 220
+ I+GC +
Sbjct: 248 AVGIDGCGKI 257
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 29/249 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ--NKSQQMSDQA 66
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP E + + S A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+V + ++A F+ DR R+ G DR+S+ I+ +R ++ + T+L P S I I V VL
Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLS 133
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLLDLNYVEDSAGG----- 178
ADG +A +NA TLAL DAGIPM ++ C++G STP D + E
Sbjct: 134 ADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGMSGSASTP-RDPRHDELDPLLDLSLP 192
Query: 179 -----PDVTVGILPTLD-------------KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
P +TV + KV +L M++K+ E ++ + I+GC +
Sbjct: 193 EEQELPSLTVATTTAVPVGENNMDEDEEAMKVCVLTMESKVHATYLETMLAVGIDGCSQI 252
Query: 221 ANYIREVRK 229
+ V K
Sbjct: 253 RELLEGVIK 261
>gi|308800668|ref|XP_003075115.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
gi|116061669|emb|CAL52387.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
Length = 321
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 26/251 (10%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP--REVQNK 58
ME+VS EGLRLDGRR E+R+ R A+ DGSA FE+GNT + V GP R+
Sbjct: 52 MEYVSFEGLRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGA 111
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ S+ + C + + F++ KGD RS + V+ + + + + LMPR ++
Sbjct: 112 EEGASEACALTCSHGRSAFASDGVQAGRKGDGRSKQFESVLAKALTSAVCVDLMPRCEVQ 171
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
+ VL DGG R+A AA LAL DAGIP++ I+ SC+ G+L+ L+D+N E+ G
Sbjct: 172 VRTTVLCDDGGARAASACAAVLALADAGIPLKGIIGSCTVGHLDGEALIDVNRDEERGRG 231
Query: 179 PDVTVGILP---------------------TLDKVTLLQMD---AKLPTNTFEDVMQLAI 214
P++ L T + +T++ + K TF+ + LA+
Sbjct: 232 PELWTCALSAGDVPDDDENEDDGEDHLMGATGNHITVIVEELERGKTTMETFKSMHDLAL 291
Query: 215 EGCKAVANYIR 225
GC+ A Y+R
Sbjct: 292 AGCETSARYLR 302
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 27 GNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86
G + +A+GS+ E +TK+I AVYGPR+ K Q S + + CE + A FS +R+
Sbjct: 6 GTIHQANGSSYVETCDTKLICAVYGPRD-NPKRHQFSSKGNIFCEVTFAPFSWHERVSNQ 64
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG 146
D S E S I Q E+ + P++QIDI++ +L+ G S AA++AL DAG
Sbjct: 65 --DSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGNCLSYAFIAASIALADAG 122
Query: 147 IPMRDIVTSCSAGYLNSTPL----LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP 202
I M D+VTSC + + N T + +D + E S V + +P+L+K++ L M +
Sbjct: 123 IEMLDLVTSCESAFSNETSIQRVCVDPSGEEVSLCKGRVVIAYMPSLNKISYLSMQGE-- 180
Query: 203 TNTFEDVMQ---LAIEGCKAVANYIRE 226
T +D MQ IEGC + Y++E
Sbjct: 181 -ETIDDSMQNVITCIEGCLRIYKYMKE 206
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 126/251 (50%), Gaps = 30/251 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP----REVQNKSQQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G D++S+ ++ ++R ++ + THL P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLLDLNYVEDSAGG--- 178
L +DG +A +NA TLAL DAGIPM ++ C++G STP N D
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPNNDTLDPLLDLSL 193
Query: 179 ------PDVTVGILPTLD--------------KVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
P +TVG + KV +L MD+K+ E ++ + I+GCK
Sbjct: 194 PEEQELPFLTVGTTTAVPVGEAAMINEDEDEMKVAMLTMDSKVHCTYVETMLAVGIDGCK 253
Query: 219 AVANYIREVRK 229
+ + V K
Sbjct: 254 QIREILEGVIK 264
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 8/231 (3%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ V+ +G R DGR+P ++R + G ++ A GSA E +TKV AVYGPR+V + +
Sbjct: 29 DLVNDDGTRHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGPRQVVRR-ED 87
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ C++ A FS R + + ++SL++ Q ME + PR+QIDIF+
Sbjct: 88 FKLTGTLTCDFKFATFSCQKRQQHMQSSNEK-DLSLIVLQAMEPAVCLEKYPRAQIDIFI 146
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED---SAGG 178
VLQ G SA I A+ AL AGI M D+V CS + +T L+D Y E+ GG
Sbjct: 147 TVLQNGGSALSAAITCASAALAAAGIEMYDVVVGCSTRQIGNTCLVDPAYDEEYNSKTGG 206
Query: 179 PD---VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ + +G++P+L++V+ +L T + ++GC + +R+
Sbjct: 207 KNNGSLCLGLMPSLNQVSAFIECGELETEILMQSIHSCVDGCMRIYPVVRQ 257
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 48/269 (17%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E + + A++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 69 RCEYSMANFSTGDRMRKPK-----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++A F+ DR +K GDR+ +TE++ ++R + I HL PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY------------------LNST 164
VL +DG +AC+NA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINES 193
Query: 165 --PLLDLNYVE----------DSAGGPDVTVGILPTLDK------------VTLLQMDAK 200
PLLD++ E ++ PD+TV ++ ++++ MD+
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEDDDYDAENENQMLSIVHMDSG 253
Query: 201 LPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ + E + + I+GCK + V K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 48/269 (17%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E + + A++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 69 RCEYSMANFSTGDRMRKPK-----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++A F+ DR +K GDR+ +TE++ ++R + I HL PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY------------------LNST 164
VL +DG +AC+NA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGEINES 193
Query: 165 --PLLDLNYVE----------DSAGGPDVTVGILPTLDK------------VTLLQMDAK 200
PLLD++ E ++ PD+TV ++ ++++ MD+
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEEDDYDAENENQMLSIVHMDSG 253
Query: 201 LPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ + E + + I+GCK + V K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 131/268 (48%), Gaps = 50/268 (18%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E + + A++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73
Query: 69 RCEYSMANFSTGDRMRKPKG-----DRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++A F+ DR +K DR+ +TE++ +IR + I HL PRS I I V
Sbjct: 74 SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY------------------LNST 164
VL +DG +AC+NA TLAL DAGIPM ++ +C+ G +N T
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQMGGVNET 193
Query: 165 --PLLDLNYVE----------DSAGGPDVTVGILPTLDK-----------VTLLQMDAKL 201
PLLD++ E ++ PD+ + P D+ ++++ MD+ +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDINI---PKDDEDEYDAENENQMLSIVHMDSGV 250
Query: 202 PTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ E + + I+GCK + V K
Sbjct: 251 HVSYLETMFAVGIDGCKQTREILNGVLK 278
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 124/231 (53%), Gaps = 13/231 (5%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G+R +G ++R + A G V++A GSA E GNTK+I +VYGP+E + + +
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C++ +A FS R +G ++S + +++ + H PRSQID+ V VL
Sbjct: 88 TGRLVCDFRLAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMVL 146
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD---- 180
+ DG + + A++AL DAGI M DIV C+ + L+D +Y E+ +
Sbjct: 147 ENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGD 206
Query: 181 ----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VT+ +LP L++V+ L D ++ +T + M+ ++GC + +++
Sbjct: 207 NQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQA 257
>gi|429328435|gb|AFZ80195.1| exosome complex exonuclease RRP41, putative [Babesia equi]
Length = 254
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 12/235 (5%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-----NVAKADGSAVFEMGNTKVIAAVYGPRE- 54
+E+ S EGLR+DGRR E+R + G +++ DG++ + G KV V GP E
Sbjct: 4 LEYFSLEGLRIDGRREREVRNIEIACGFECDVDISGYDGASQIKHGLNKVQVLVKGPSEG 63
Query: 55 ---VQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL 111
++ + + D +R E FST + K DR T+I I+ T I+ +
Sbjct: 64 GKALRGAQRALDDSVDIRVE---VMFSTDKGPKSSKNDRMVTDIVNAIKGTFGEAIIQDM 120
Query: 112 MPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171
R I IFV +++ADGG +S +NA +AL DAGI +RD+ +SCS L + D N+
Sbjct: 121 YKRLAIRIFVNIIEADGGIKSTVLNAVGVALIDAGIALRDLTSSCSVVLLENRIFTDGNH 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+E +A ++TV + + K+ + + +K+P +D+ + G + +E
Sbjct: 181 LEINAATAELTVAVYSSSGKMIYVDLRSKVPVKELDDLFDACVRGTGHFSRIAKE 235
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 96/165 (58%), Gaps = 14/165 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNV------------AKADGSAVFEMGNTKVIAAVYGPREVQ 56
LR DGRRP E+R + +G + + GSA+ MG T+V+ V GP +
Sbjct: 8 LRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAG 67
Query: 57 NKSQQMSDQALVRCEYSMANFST-GDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPR 114
+++++ D+A + + FS GDR + P DRR E S +++ + A IL HL P+
Sbjct: 68 RRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDRRLIEQSHLLQTALSASILLHLYPK 127
Query: 115 SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159
S+I + V VL DGG A INAATLAL DAGIP++D+V +CSAG
Sbjct: 128 SKISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDMVCACSAG 172
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 12/219 (5%)
Query: 10 RLDGRR--PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
R+DGR+ ++R + G +++A GSA E GNTK+I VYGPRE++ K +
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGR 95
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ + A FS +R +G ++SL++ +++ + H PRSQI++ V VL+ D
Sbjct: 96 LMTDMRFAPFSCRERGSWIQGSDEK-DLSLMLLESLRPGVCLHKYPRSQIEVNVMVLEND 154
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED-----SAGGPD-- 180
G + + A++AL DAGI M D+V CS ++T L+D Y+E+ ++G D
Sbjct: 155 GSVLAHAVTCASMALADAGIEMYDLVLGCSIRQESATYLIDPTYLEENGCNLASGSGDNF 214
Query: 181 --VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
+TV LP+L++++ LQ D ++ + ++ IEGC
Sbjct: 215 GSLTVAFLPSLNQISGLQSDGEMGEDILTGGVRTCIEGC 253
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 48/269 (17%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E + + A++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 69 RCEYSMANFSTGDRMRKPK-----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++A F+ DR +K GDR+ +TE++ +R + I HL PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY------------------LNST 164
VL +DG +AC+NA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASSPAVTAESAQIGGINES 193
Query: 165 --PLLDLN----------YVEDSAGGPDVTV------------GILPTLDKVTLLQMDAK 200
PLLD++ V ++ PD+TV ++++ MD+
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDGEDEEDDEYDAENENQMLSIVHMDSG 253
Query: 201 LPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ + E + + I+GCK + V K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|340712756|ref|XP_003394921.1| PREDICTED: exosome complex component RRP41-like isoform 2 [Bombus
terrestris]
Length = 220
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 21/188 (11%)
Query: 65 QALVRCEYSMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ +V C+YSMA FS +G+R R+P+GDR+S E SL ++ MEA I + PRSQIDI+V+
Sbjct: 19 KGIVNCQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVE 78
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP-----------LLDLNY 171
LQ DG +NAATLAL DAGIP+++ C+ +N+ +LD NY
Sbjct: 79 ALQVDGSEYCTSVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANY 138
Query: 172 VEDSAGGPDVTVGILPTLDK-------VTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
+E+ A G +++ LP D V +L + FE + + GC+ + +
Sbjct: 139 LEECAPGVTLSIVALPNSDSKSKDGLIVVAQGAGQRLHLSQFESLKARVLYGCQDIKTIL 198
Query: 225 -REVRKFL 231
VR++L
Sbjct: 199 DHAVRQYL 206
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 3/196 (1%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R+DGRRP E+R++ + G+ +DG GNTKVIA+V GP + K D A
Sbjct: 8 GRRVDGRRPNEIRRVDCQFGS-GYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGAT 66
Query: 68 VRCEYSMANF--STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+ C+++ F ++G+R + DR + + + I + I T P SQIDIF++V+Q
Sbjct: 67 ITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQ 126
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
+DG + +NA TLAL DAGI M +V++ + G S DL E++ +TV
Sbjct: 127 SDGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGSHVFADLCRFEENPRISQLTVVC 186
Query: 186 LPTLDKVTLLQMDAKL 201
LP + ++ + + ++
Sbjct: 187 LPNVHLLSGVNTEEQI 202
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
Query: 7 EGLRLDGRR--PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
+G R DGRR ++R + G V++A GSA E GNTK++ VYGPRE K +
Sbjct: 31 KGPRADGRRRDQVDVRPVFVRCGLVSQAKGSAYLEAGNTKLMCCVYGPRETDRKDETDMK 90
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ + A FS +R +G + + SL++ ++++ I H PRSQI++ V VL
Sbjct: 91 CGRLTTDMRFAPFSCPERGSWIQGSQ-DKDFSLMLHESLQPAICLHKYPRSQIEVSVMVL 149
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA-------- 176
+ G + + A+LAL DAGI M D+V CS ++ ++D +Y+E++
Sbjct: 150 ENSGSVLAHAVTCASLALADAGIEMYDLVLGCSMRQDGTSYVVDPSYMEENGCSSVSCEN 209
Query: 177 -GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
GG +TV LP+L++++ LQ D + T ++ IEGC
Sbjct: 210 QGG--LTVAFLPSLNQISGLQSDGDMTEETLTAGVRTCIEGC 249
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 36/251 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E + + A++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 69 RCEYSMANFSTGDRMRKPK-----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++A F+ DR +K GDR+ +TE++ ++R + I HL PRS I I V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST--PLLDLNYVE------- 173
VL +DG +AC+NA TLAL DAGIPM G +N + PLLD++ E
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMP------GWGGINESLDPLLDISAPEEVELPYM 187
Query: 174 ---DSAGGPDVTV------------GILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
++ PD+ V ++++ MD+ + + E + + I+GCK
Sbjct: 188 TVANTNPMPDINVPRDDEDEEDDEYDAENENQMLSIVHMDSGVHVSYLETMFAVGIDGCK 247
Query: 219 AVANYIREVRK 229
+ V K
Sbjct: 248 QTREILNGVLK 258
>gi|425769344|gb|EKV07839.1| Exosome complex component ski6 [Penicillium digitatum Pd1]
gi|425771116|gb|EKV09570.1| Exosome complex component ski6 [Penicillium digitatum PHI26]
Length = 508
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD---- 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP E +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGGGAAGSG 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F+ DR R+ G DR+S+ I+ +R ++ + T+L P S I I V V
Sbjct: 74 HAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159
L ADG +A INA TLAL DAGIPM ++ C+AG
Sbjct: 134 LSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAG 169
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 3/197 (1%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGRR E+R++ + +DG + GNTKV+A+V GPR + K D+A +
Sbjct: 231 RIDGRRTNELRRVFCQF-QTGNSDGIVLLHQGNTKVMASVVGPRPCRFKGDMKPDEATLV 289
Query: 70 CEYSMANFST--GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
C+Y+ FS+ G+R + DR +++ + I + + P SQIDIF++VLQ+D
Sbjct: 290 CKYNKPPFSSTSGERRKVSNRDRSTSDFAATIEEIFSCVVRKEKYPMSQIDIFLEVLQSD 349
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G + +NAATLAL DAGI MR + + + G DL E++ P +T+ L
Sbjct: 350 GSEFACAVNAATLALTDAGIEMRSLACAATVGMWGPHLFADLCRFEENPRIPQLTMVCLQ 409
Query: 188 TLDKVTLLQMDAKLPTN 204
+D+ L + P +
Sbjct: 410 VVDEAGPLNPNTDNPAS 426
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 128/269 (47%), Gaps = 48/269 (17%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E + + A++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 69 RCEYSMANFSTGDRMRKPK-----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
++A F+ DR +K GDR+ +TE++ +R + I HL PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST------------------ 164
VL +DG +AC+NA TLAL DAGIPM ++ +C+ G
Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGIKES 193
Query: 165 --PLLDLNYVE----------DSAGGPDVTVGILPTLDK------------VTLLQMDAK 200
PLLD++ E ++ PD+TV ++ ++++ MD+
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEDDEYDAENENQMLSIVHMDSG 253
Query: 201 LPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ + E + + I+GCK + V K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV--QNKS 59
E + +G R DGRR E R+ A+IG V+ A GSA E+GNTKVI +V+ PRE+ QNK
Sbjct: 35 EALGKDGKRKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKF 94
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
++ + + C+ + F+ R + + D R ++ + + + HL P QID+
Sbjct: 95 CELGE---LFCDLKFSPFAPAVR-KTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDV 150
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS---A 176
F VL+ DG + I AA LAL DA +PM DIVT+ +AG L ++D E++ A
Sbjct: 151 FANVLEDDGSALAVAITAAGLALGDACVPMFDIVTAATAGVLGDRVVMDPTAEEEALCLA 210
Query: 177 GGPDVTVGI-----LPTLDKV 192
G + G+ LPTLD+V
Sbjct: 211 GHTEENHGLVMLAKLPTLDQV 231
>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 261
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP------REVQNK-SQQ 61
LRLDGRR E+R++ A+I +DGS+ MGNT+V+ V GP R + +
Sbjct: 13 LRLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGNSN 72
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++A VR E S A F+ DR + + D+R E+S + T +LT L S I + +
Sbjct: 73 AGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILLSL 132
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------TPLLDLNYVE 173
+L DG SA INA+TLAL DAGIPM + +C+AG +S PLLDLN E
Sbjct: 133 HILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLSE 192
Query: 174 DSAGGPDVTVGILPT--LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ P +TV D V L M+ ++ E ++ + ++GCK V
Sbjct: 193 EQE-LPFLTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQV 240
>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 284
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 34/252 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + + GS+ MGNT ++ V+GP E + +ALV
Sbjct: 14 LRLDGRRWNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVHGPHETSGAGS--ATEALV 71
Query: 69 RCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ ++A F+ DR R+ G DR+S+++S ++ ++ + T+L P S I + V VL +D
Sbjct: 72 DIDVNIAGFAGVDRKRRAGGSDRQSSQLSTALKSAFQSHLHTYLYPHSTITVQVSVLSSD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLLDLNYVEDSAGG------- 178
G +A INA TLAL DAGIPM ++ +C+AG STP DL+ +
Sbjct: 132 GSLFAAAINACTLALVDAGIPMPGLLCACTAGMSGSASTP-RDLSGSDQDQLDPLLDLSL 190
Query: 179 ------PDVTVGILPTLD---------------KVTLLQMDAKLPTNTFEDVMQLAIEGC 217
P +T+G L KV++L M+ + T+ + ++ + I+GC
Sbjct: 191 PEEQELPFITIGTTTALPAGSAVGAEDDVDDDMKVSVLHMETRAHTSYLDAMLAVGIDGC 250
Query: 218 KAVANYIREVRK 229
K + + V K
Sbjct: 251 KQIREILEGVIK 262
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E V P G R DGR TE R++ + G V++A GSA E+ TKVI +V+ PRE+ NK+
Sbjct: 34 EIVQPNGTRADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTD- 92
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
S + + CE+ A FS R R + D + S +++Q +E+ + H P Q+DI+
Sbjct: 93 YSSKGEIYCEFKFAPFSCHKR-RLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYA 151
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD 168
VL DG SA I AA +AL AGIPM D++TS + + L+D
Sbjct: 152 MVLHNDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLLVD 198
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G+R DGR+ E R + G V A GSA E G+TKVI +V+GPRE +K+Q SD
Sbjct: 29 DGIRSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSVFGPRE-SSKAQIYSDTG 87
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S A FST R + +G E S ++ + +E ++ + P++ +D+F VL++
Sbjct: 88 RLNCSVSFATFSTPIRGKLSQGTEHR-EYSTMLHKALEGAVMLNTFPKATVDVFALVLES 146
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
GG I ATLAL DAGI M D+V++ S + + ++D E++ + V
Sbjct: 147 GGGDLPVVITCATLALADAGIMMFDVVSAVSVSSIGKSLIIDPTTEEENCQDGGLMVACT 206
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+ +++T L + + + + ++L ++ C +A +R K
Sbjct: 207 PSRNEITQLIITGEWSSTRVSEALELCLDACSKLAAIMRSCLK 249
>gi|399216737|emb|CCF73424.1| unnamed protein product [Babesia microti strain RI]
Length = 256
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 3/229 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE---VQN 57
+EFV+ G RLDGR E R + G A +DGSA + G T +I V GP + V+
Sbjct: 4 LEFVNAAGYRLDGRLCNETRNITVSHGEYATSDGSASIKQGLTHIIVLVKGPSDSTYVKQ 63
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+Q L+ C+ +++N + D R K D + EISL+I++ ++ I+ L RSQI
Sbjct: 64 ANQTNFASVLINCDINISNNLSTDIRRGTKLDIITAEISLLIKKVFKSIIIVPLSKRSQI 123
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
V++L DG +S IN TLAL DAG+ ++ +V S S YL+ L D +E +
Sbjct: 124 TFSVEILDCDGCLKSTIINCCTLALIDAGVAVKSLVFSSSVCYLDKIVLADPTQLETNYS 183
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T+ + + + +K+ F+ + ++ K ++ R
Sbjct: 184 TAELTIATESITNNPIYIDLASKVSEEGFKKMYSSCLKSNKEYSHIFRN 232
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 12/229 (5%)
Query: 7 EGLRLDGRR--PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
G R DGR+ ++R + G V++A GSA E G+TK++ +VYGPRE + K +
Sbjct: 31 HGARADGRQRDQVDVRPVFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMK 90
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ + A FS +R +G + SL+++++++ + H PRSQI++ V VL
Sbjct: 91 CGRLTTDMRFAPFSCPERGSWIQGSQ-DKNFSLMLQESLQPALCLHKYPRSQIEVNVMVL 149
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA-------G 177
+ G ++ I A+LAL DAGI M D+V CS S+ ++D Y E+S G
Sbjct: 150 ENSGSVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSSEHQG 209
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
G +TV LP+L++V+ LQ D ++ T ++ IEGC + I++
Sbjct: 210 G--LTVAFLPSLNQVSGLQSDGEMAEETLTAGIRTCIEGCYKLYPVIQQ 256
>gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis
mellifera]
Length = 210
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 21/180 (11%)
Query: 73 SMANFS--TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT 130
SMA FS +G+R RKP+GDR+S E SL ++ MEA I L PRSQIDI+V+ LQ DG
Sbjct: 22 SMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSE 81
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-----------LDLNYVEDSAGGP 179
A +NAATLAL DAGIP+++ C+ +N L LD NYVE+ A G
Sbjct: 82 YCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKGVLDANYVEECAPGV 141
Query: 180 DVTVGILPTLDKVT-----LLQMDA--KLPTNTFEDVMQLAIEGCKAVANYI-REVRKFL 231
++V LP D ++ ++ A +L + FE + + GC+ + + VR++L
Sbjct: 142 TLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCGCQDIKTILDHAVRQYL 201
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 10/221 (4%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GRR T + G V++A GSA EMG TKVIAAVYGPRE+ + ++ + + + CE
Sbjct: 1198 GRR-TAGPRTDLHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARR-EEFTMKGRLCCEL 1255
Query: 73 SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRS 132
A F+ R R+ D + + +L++ Q +E + P+SQ+D+++ VLQ DG +
Sbjct: 1256 KFATFAC-RRRRQHIQDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSALA 1314
Query: 133 ACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED-SAGGPD------VTVGI 185
A I A L DAG+ M DIV CS LLD + E+ S G VTVG+
Sbjct: 1315 AAITCAAAGLADAGVMMYDIVAGCSVRQCGERQLLDPSVGEELSQEGESAEDHGMVTVGL 1374
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
LP+L++V+ L +D L T ++ I GC+ + +++
Sbjct: 1375 LPSLNQVSALTLDGHLQQQTAVQAVKTCIGGCQGIYPILKD 1415
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 4/217 (1%)
Query: 9 LRLDGRRPTEMRQLRA---EIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ 65
LR D R + M Q+RA ++G + A GSA E+ TKVI AVYGPR ++ +
Sbjct: 21 LRADQTR-SSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEG 79
Query: 66 ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+ C+ A F+ +R R D ++S ++ + + I +P+ + FV +LQ
Sbjct: 80 GQLICDVKFAPFAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVILQ 139
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
+DG + I A+LAL DA I MRD+VT+C+AG ++ L+DL E+ + +
Sbjct: 140 SDGSELATAIMCASLALADAAIEMRDLVTACNAGIVDDKLLVDLCTSEERMSQGNTMLAF 199
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
LP+L K T + + E+++ + C +V N
Sbjct: 200 LPSLQKSTFVMQQGTMTHAQVEEMIDVCSIACSSVLN 236
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 27 GNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86
G +++A GSA E GNTK++ VYGPREVQ KS S + CE+ A FS R R
Sbjct: 4 GIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSD-FSLNGQLFCEFKFAPFSCQKR-RGH 61
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG 146
+ D +S ++R+ +EA + H P++Q+++ V V++ DG +A + A+LAL A
Sbjct: 62 QQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASLALASAS 121
Query: 147 IPMRDIVTSCSAGYLNSTPLLD----------LNYVEDSAGGPDVTVGILPTLDKVTLLQ 196
IPM D++ S + LLD LN+ E+++ ++TVG +P+ +V+
Sbjct: 122 IPMYDLMIGTSVRQIPKLFLLDPTKDEEWQPELNHDENNS---NLTVGFMPSTHQVSAYV 178
Query: 197 MDAKLPTNTFEDVMQLAIEGCKAV 220
+ T E +++LA E C V
Sbjct: 179 HEGVSKTEDLEQMLKLATEYCLKV 202
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 26/207 (12%)
Query: 27 GNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86
G +++A GSA E GNTKVIA VYGPRE + K FST R++
Sbjct: 4 GTLSQAAGSAYAEFGNTKVIAGVYGPREAERKEV----------------FSTEGRLQCD 47
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG 146
+ R E+S+ ++ +EA + P++ +DI+ VL++ G + CI AA+LAL DAG
Sbjct: 48 NDEER--ELSVQLQTALEAAVRLQTFPKANVDIYCLVLESAGADLAVCICAASLALADAG 105
Query: 147 IPMRDIVTSCSA----GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP 202
I M D+V++CS G+L P +D Y ED + + ++P+ + V+ + + +
Sbjct: 106 IEMEDMVSACSVSRVDGHLLLDPTIDEAYREDGS----ALLAMMPSANAVSQVVLTGQWS 161
Query: 203 TNTFEDVMQLAIEGCKAVANYIREVRK 229
+V+QL + GC + Y+R+ K
Sbjct: 162 NAQASEVLQLCMGGCAQIDAYMRQSIK 188
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 10 RLDGRR--PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
R+DGR+ ++R + G +++A GSA E GNTK+I VYGPRE + K +
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ + A FS +R +G ++SL++ +++ + PRSQI++ V VL+ D
Sbjct: 96 LITDMRFAPFSCRERGSWIQGSDEK-DLSLMLLESLRPGVCLQKYPRSQIEVNVMVLEND 154
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS----AGGP---- 179
G + + A++AL DAGI M D+V CS +T L+D ++E++ A G
Sbjct: 155 GAVLAHAVTCASMALADAGIEMYDLVLGCSIRQEGATYLIDPTFLEENGCNLASGSRENL 214
Query: 180 -DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
+TV LP+L++++ LQ D ++ +T ++ IEGC
Sbjct: 215 GSLTVAFLPSLNQISGLQSDGEMGEDTLTGGVRTCIEGC 253
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 13/236 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E + G R GR E R L A G +++A GS+ E+ TKV +V+ PRE+ ++++
Sbjct: 34 ELIDENGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNE- 92
Query: 62 MSDQALVRCEYSMANFST-GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
S + CE A FS G+R P D R+ +S+ +++ +E + HL P QIDI
Sbjct: 93 YSTLGQLYCEVKYAPFSCRGERKALVPDSDERA--LSVALKKALEPAVCRHLFPNYQIDI 150
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
F+ +L+ DG A INAA LAL DA +PM DI+T+ S +D E+
Sbjct: 151 FIYILENDGACLPAAINAAGLALSDAAVPMYDIITASSLAISGDKVFVDPTDDEEQLAIR 210
Query: 180 D--------VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
D +T+ +LP L +V+ + + + + + + + CK + Y++ V
Sbjct: 211 DHEGVNHGVITMSMLPELQQVSDYRQIGSMDADCVLNALSILEKECKKIVPYVQRV 266
>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
Length = 172
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 102 TMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161
+E I T L PRSQIDI+VQVLQ DGG ACINA TLAL +AGIP+ D V + + G
Sbjct: 20 NIEPVIQTSLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGIPLLDFVCAVTGGVH 79
Query: 162 NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
+++PLLDL +E++ P+VTV ++P KVTL+ M+ +L + FE++ +LA E +
Sbjct: 80 STSPLLDLTQLEEN-DLPNVTVAVMPRSGKVTLVSMETRLHVDRFEEIFRLAGEAGTVIH 138
Query: 222 NYIREVRK 229
++ K
Sbjct: 139 GEMKRAVK 146
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 32/230 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R +IG ++KADGSA GNT IAAVY + +Q+ +
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVY--------LKPGREQSNL 52
Query: 69 RCEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
+ Y M F+ +R KG RR E+S +I + +E I+ +P I+ V++++
Sbjct: 53 KVSYRMLPFAGEER----KGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN--------------- 170
AD GTR A INA +LAL AGIPM+ +V + + G + +LDLN
Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKEL 168
Query: 171 --YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
Y E G V + + +K+TLLQ+D + + + ++L +G K
Sbjct: 169 PQYYEYYGEGKAVDIPMAMYKNKITLLQLDGSIDRKSLLEAIKLGKDGIK 218
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R G V A GSA E GNTKVI +V+GPRE + K+ SD+ +
Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDKGKLN 99
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T + D + E S ++ + +E ++ P++ +D+F VL++ G
Sbjct: 100 CNVSYTTFAT--TVHGQGSDNK--EFSTMLHKALEGAVMLETFPKTTVDVFALVLESGGS 155
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+V S L ++D E+S + + +P+
Sbjct: 156 DLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPTLEEESFQDGSLMITCMPSH 215
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + T + MQL ++ C +A +R K
Sbjct: 216 YEITQLTITGEWSTANLNEAMQLCLDACSKLAKILRSCLK 255
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 13/236 (5%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E + G R GR E R L A G +++A GS+ E+ TKV +V+ PRE+ ++++
Sbjct: 34 ELIDENGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNE- 92
Query: 62 MSDQALVRCEYSMANFST-GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
S + CE A FS G+R P D R+ +S+ +++ +E + HL P QIDI
Sbjct: 93 YSTLGQLYCEVKYAPFSCRGERKALVPDSDERA--LSVALKKALEPAVCRHLFPNYQIDI 150
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
F+ +L+ DG A INAA LAL DA +PM DI+T+ S +D E+
Sbjct: 151 FIYILENDGACLPAAINAAGLALSDAAVPMYDIITASSLAISGDKVFVDPTDDEEQLAIR 210
Query: 180 D--------VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
D +T+ +LP L +V+ + + + + + + + CK + Y++ V
Sbjct: 211 DHEGVNHGVITMSMLPELQQVSDYRQIGSMDADCVLNALSILEKECKKIVPYVQRV 266
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 5/222 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R D RRP ++R + + G + +A+GSA E GN KVI AVYGPR+ ++ S L
Sbjct: 29 GQRADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTL 88
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+C++ A FS G++ + D + E S+V+ Q + I P+ I +FV VL+ D
Sbjct: 89 -QCDFKFAPFS-GEKRKGYAKDDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLEND 146
Query: 128 GGTR--SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVG 184
G +A I+ A+LAL +AGI M D+V + S Y + L LD++ E+ + V
Sbjct: 147 GSMSALAAAISCASLALANAGIEMLDMVAASSIAYFGESMLCLDVSLKEEMVQDGAMLVS 206
Query: 185 ILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+P+L++VT L T+ ++L ++ C + ++E
Sbjct: 207 YMPSLNEVTHLIQTGLATTSQCTKAIELGVDACSQIHTILQE 248
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R G V A GSA E GNTKVI +V+GPRE + K+ SD +
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDTGRLN 91
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S FST +R D + E S ++ + +E I+ P++ +D+F VL++ G
Sbjct: 92 CNVSYTTFST--PVRGQGSDHK--EYSSMLHKALEGAIILDSFPKTTVDVFALVLESSGS 147
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+V S S L ++D + E+++ + + +P+
Sbjct: 148 DLPVVISVASLALADAGILMYDLVASVSVSCLGKNLVIDPIFEEENSQDGSLMITCMPSR 207
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + T + MQL ++ C +A +R K
Sbjct: 208 YEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLK 247
>gi|403220758|dbj|BAM38891.1| exosome complex exonuclease rrp41 [Theileria orientalis strain
Shintoku]
Length = 254
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 12/236 (5%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-----NVAKADGSAVFEMGNTKVIAAVYGPREV 55
+E+ S EGLRLDGRR E+R+ + G + DG + G KV V GP+E
Sbjct: 4 IEYFSLEGLRLDGRRKDELRKTKLYCGSDCSVDFMDYDGVSELIQGLNKVQVLVKGPQED 63
Query: 56 QNKSQQM----SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL 111
S+ ++ +RCE MA T R++ + +R ++SL ++ T + I++H
Sbjct: 64 PRSSKNTYGIAEERIDIRCEIVMA---TEKRVKNSQNERVIKDLSLSVKSTYQEMIISHY 120
Query: 112 MPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171
+++FV +++ DG +S +NA +AL DAG+ ++D+V+S + L+S L D N
Sbjct: 121 YKGCSLNVFVNIIEYDGSIKSTVLNAVGVALVDAGVAIKDLVSSSTVISLDSIILTDPNQ 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+E A + V + + DK+ + +K+ +++ A K +Y REV
Sbjct: 181 MELKASTAVLCVAVESSTDKIIYMDYKSKIHLEEINTMVEAAFAASKKFTDYAREV 236
>gi|226287267|gb|EEH42780.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 300
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 46/267 (17%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS--DQA 66
LRLDGRR E+R ++A+I GS+ MGNT VI V+GP E + S + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTIVICMVHGPAEGRRSEATGSAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKP------------KGDRR-STEISLVIRQTMEACILTHLMP 113
++ ++A FS DR +K GDR+ ST++++ +R + + THL P
Sbjct: 74 IISVAVNIAGFSGVDRKKKSLAAGAGGGGGGGGGDRQASTDLAIALRDAFQPHLHTHLYP 133
Query: 114 RSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY------------- 160
S I + + VL +DG +ACINA TLAL DAGIPM ++ +C+ G
Sbjct: 134 HSTISLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMK 193
Query: 161 ----LNST--PLLDLNYVEDS-------AGGPDVTVGILPTLDK-----VTLLQMDAKLP 202
+N + PLLD++ E+ A G P D+ ++++QM++ +
Sbjct: 194 RVGGINESLDPLLDMSMPEEQELPFMTVANSNPAPPGHDPMDDEEDNQMLSVVQMESGVH 253
Query: 203 TNTFEDVMQLAIEGCKAVANYIREVRK 229
+ E + + +GCK V + V K
Sbjct: 254 ISYLETMFAVGFDGCKQVREILNGVLK 280
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R G V A GSA E+GNTKVI +V+GPRE + K+ SD +
Sbjct: 32 RPDGRSFHQCRPAFFRTGAVNAASGSAYAEVGNTKVIVSVFGPRESK-KAMMYSDIGRLN 90
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T +R D + E S ++ + +E I+ P++ +D+F VL++ G
Sbjct: 91 CNVSFTTFAT--PIRGQGSDHK--EYSSMLHKALEGAIILETFPKTTVDVFALVLESSGS 146
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+V S S N ++D E++ + + +P+
Sbjct: 147 DLPVVISCASLALADAGIMMYDLVASVSVSCFNKNLVIDPVLEEENGQDGSLMITCMPSR 206
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + T + MQL ++ C +A +R K
Sbjct: 207 YEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLK 246
>gi|384491910|gb|EIE83106.1| hypothetical protein RO3G_07811 [Rhizopus delemar RA 99-880]
Length = 255
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 11/224 (4%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E ++ E RLD R ++R + + G V +A+GSA E+GNTKV AVYGPR+++ S
Sbjct: 26 EILNNERKRLDNRGLEDLRAIFLKPGLVTQANGSAYIEVGNTKVACAVYGPRQLKKSS-- 83
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
S + C++ + FS R R D E S ++ Q + + L+P+S IDI++
Sbjct: 84 FSQNGTLNCDFKFSPFSCVKR-RSAVRDPEEKEFSQILIQALSPAVRLELLPKSTIDIYI 142
Query: 122 QVLQADGGTRSACI----NAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
VL++DG S+C+ A+++AL DAGI M D VT+CS+ + L+D E+S
Sbjct: 143 NVLESDG--TSSCLAAAIVASSIALADAGIEMLDQVTACSSVFAQDQILMDGTEREESQK 200
Query: 178 GPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + +P+L++VT +LQ+ T + V Q I+GC +
Sbjct: 201 DGSLVLSFMPSLNEVTHILQIGQSDSVMTSKAVEQ-CIDGCSKI 243
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 1/225 (0%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G R+DGR R G V A GSA E G+TKVI +V+GPRE K++ SD
Sbjct: 22 SSDGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRE-SKKAEAFSD 80
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C +F+T R + + ++S ++ +++ + P++ +D+F VL
Sbjct: 81 AGRLNCNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVL 140
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVG 184
Q+ GG + A+LAL DAGI + D+V + SA + LLD + E++ + V
Sbjct: 141 QSGGGDLPVIVTCASLALADAGIVLYDLVAAVSASSIQGQVLLDPSTSEENCEDGSLMVA 200
Query: 185 ILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+P+ ++T + M + ++ + ++L ++ C + + +R K
Sbjct: 201 YMPSRKEITQVTMTGEWSSSRASESLELCLDACAKIGDVMRSCLK 245
>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
Length = 291
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 132/260 (50%), Gaps = 40/260 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I + GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKPK----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFV 121
+V ++A FS DR +K GDR+ ST+++ +R + + TH+ P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY-----------------LNST 164
VL +DG +ACINA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 165 --PLLDLNYVEDSAGGPDVTVG---ILPTLDK----------VTLLQMDAKLPTNTFEDV 209
PLLD++ E+ P +TV PT D ++++QM A + + E +
Sbjct: 194 LDPLLDMSMPEEQE-LPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 252
Query: 210 MQLAIEGCKAVANYIREVRK 229
+ ++GCK V + V K
Sbjct: 253 FAVGLDGCKQVREILNGVVK 272
>gi|156537299|ref|XP_001606070.1| PREDICTED: exosome complex component MTR3-like [Nasonia
vitripennis]
Length = 284
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+D R+ E+R++ ++G V++A GSA EMG TKVI + + PRE+ NK+ S Q +
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTS-YSTQGEIF 97
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
CE+ A+F+T R + + D E SL++++ +E + H P Q+D++ VL G
Sbjct: 98 CEFKFASFATCKR-KGHQQDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDNGGS 156
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAG 159
A I A+LAL +A +PM IVT+ +AG
Sbjct: 157 ALGAAIMGASLALANASVPMFGIVTAVTAG 186
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMLYSDTGRLN 97
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T MR D + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 98 CNVSYTTFAT--PMRGQGTDNK--EYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S ++D E++ + V +P
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLMVAYMPAR 213
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + + ++L ++ C + + +RE K
Sbjct: 214 KEITQLTLTGEWSDGKITNAVELCMDACSKLCDILREHLK 253
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 132/260 (50%), Gaps = 40/260 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I + GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKPK----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFV 121
+V ++A FS DR +K GDR+ ST+++ +R + + TH+ P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY-----------------LNST 164
VL +DG +ACINA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 165 --PLLDLNYVEDSAGGPDVTVG---ILPTLDK----------VTLLQMDAKLPTNTFEDV 209
PLLD++ E+ P +TV PT D ++++QM A + + E +
Sbjct: 194 LDPLLDMSMPEEQE-LPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 252
Query: 210 MQLAIEGCKAVANYIREVRK 229
+ ++GCK V + V K
Sbjct: 253 FAVGLDGCKQVREILNGVVK 272
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMLYSDTGRLN 98
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+TG R + + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 99 CSVSYTTFATGIRGQG----LENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S L ++D E++ + V +P
Sbjct: 155 DLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGLMVSYMPAR 214
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T L + + + ++L ++ C + +RE
Sbjct: 215 KEITQLTLTGEWTDGKITNAVELCMDACSKLCEILRE 251
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 10/219 (4%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGN-TKVIAAVYGPREVQNKSQQMSDQA 66
G R D R + R + ++G + +A GSA E N TKVI +VYGPR++ +++ SD
Sbjct: 63 GKRQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNE-FSDIG 121
Query: 67 LVRCEYSMANF--------STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
++CEY +ANF ST R E S+ +R+ +E I P+S ID
Sbjct: 122 AIQCEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVID 181
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
++ +LQ DG SA I+ A+LAL +AGI M D+V++C+ L ++D +E
Sbjct: 182 VYCFILQDDGSALSAAISCASLALANAGIEMYDMVSACTTSELEGHIIVDPTNLEYKYAS 241
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
+ + L++VT L + + M L I+GC
Sbjct: 242 GGMVCAYMSNLNQVTQLSQVGDMSYQKIGEAMDLCIDGC 280
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 5/223 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+ +R DGR + R G V A GSA E GNTKVI +V+GPRE K+ SD
Sbjct: 30 DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIG 88
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S F+T +R D + E ++ + +E I+ P++ +D+F VL++
Sbjct: 89 RLNCNVSFTTFAT--PIRGQGSDHK--EYCAMLHKALEGAIILETFPKTTVDVFALVLES 144
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
G I+ A+LAL DAGI M DIV S S N ++D E+ + + +
Sbjct: 145 SGSDLPVVISCASLALADAGIMMYDIVASVSVSCFNKNLVIDPILEEEIGQDGSLMITCM 204
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+ ++T L + + T + MQL ++ C +A +R K
Sbjct: 205 PSRYEITQLTVTGEWSTTKINEGMQLCLDACAKLAKIMRSCLK 247
>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
Length = 292
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 41/261 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I + GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKPK----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFV 121
+V ++A FS DR +K GDR+ ST+++ +R + + TH+ P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS------------------AGYLNS 163
VL +DG +ACINA TLAL DAGIPM ++ +C+ G +N
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGGINE 193
Query: 164 T--PLLDLNYVEDSAGGPDVTVG---ILPTLDK----------VTLLQMDAKLPTNTFED 208
+ PLLD++ E+ P +TV PT D ++++QM A + + E
Sbjct: 194 SLDPLLDMSMPEEQE-LPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLET 252
Query: 209 VMQLAIEGCKAVANYIREVRK 229
+ + ++GCK V + V K
Sbjct: 253 MFAVGLDGCKQVREILNGVVK 273
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 14/167 (8%)
Query: 9 LRLDGRRPT-EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
LR D R+ + ++R ++ E+G + KADGS F GNT VI +V GP ++ ++ DQA+
Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGP---ESSMKEKGDQAI 62
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ + + R K E L+IRQT+E ILT++ PR+ I I +QV+Q D
Sbjct: 63 IDVMF---------QPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYD 113
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP-LLDLNYVE 173
G SA +NAA+LAL DAG+ M+ + S S YLNS LLD +E
Sbjct: 114 GCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIE 160
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMLYSDTGRLN 98
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+TG R + + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 99 CSVSYTTFATGIRGQG----LENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S L ++D E++ + V +P
Sbjct: 155 DLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGLMVSYMPAR 214
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T L + + + ++L ++ C + +RE
Sbjct: 215 KEITQLTLTGEWTDGKITNAVELYMDACSKLCEILRE 251
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 14/232 (6%)
Query: 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV--QNKSQQMS 63
P G R GR+ E R+ ++G V+ A GS E+GNTKVI +V+ PRE+ QNK + +
Sbjct: 38 PSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALG 97
Query: 64 DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
+ + C++ + F+ R + P+ D ++ + + ++ + HL P QIDIF V
Sbjct: 98 E---LYCDFKFSPFACIHR-KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANV 153
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS---AGGPD 180
L+ DG +A I AA LAL DA I M DIVT+ + + LD E+ GG
Sbjct: 154 LEDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTLAEERLCLEGGKS 213
Query: 181 -----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+T+ L TLD+ + ++ + ++ Q E +A ++++
Sbjct: 214 GNHGVITLAKLHTLDQTSEIRQAGDISLEKLKEACQRLNEANNEIAPVVQQM 265
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 5/223 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+ +R DGR + R + G V A GSA E GNTKVI +V+GPRE K+ S
Sbjct: 29 DWVRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMAYSGTG 87
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S F+ +R D + S ++ + +E I+ P++ +D+F VL++
Sbjct: 88 RLNCNVSYTTFAM--PIRGQGSDHKG--YSSMLHKALEGAIIVESFPKTTVDVFALVLES 143
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
G I+ A+LAL DAGI M D+V S S L ++D E+S + + +
Sbjct: 144 GGSDLPVVISCASLALADAGIMMYDLVASVSVSCLGKNLVIDPILEEESYQDGSLLITCM 203
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+ ++VT L ++ + T + MQ+ +E C +A IR K
Sbjct: 204 PSRNEVTQLTVNGEWSTPRVHEAMQICLEACSKLAKIIRSCLK 246
>gi|164661143|ref|XP_001731694.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
gi|159105595|gb|EDP44480.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
Length = 182
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD 144
K DR+ E + +R T+E I THL PRSQ+DI + V Q DGG A INA TLAL D
Sbjct: 23 KLTSDRQLVEWANAVRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAMINACTLALMD 82
Query: 145 AGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTN 204
AGIPM D VT+ + G ST +LDLN E S P VTV ILP V L+Q+D ++ +
Sbjct: 83 AGIPMSDYVTAMTCGLHGSTAMLDLNLTEQS-DLPFVTVAILPRTGTVPLIQLDTRMHMD 141
Query: 205 TFEDVMQLAIEGCKAV 220
F ++ + ++ + +
Sbjct: 142 RFAAMVHVCVDAARVL 157
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV--QNKSQQMS 63
P G R GR+ E R+ ++G V+ A GS E+GNTKVI +V+ PRE+ QNK + +
Sbjct: 38 PSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALG 97
Query: 64 DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
+ + C++ + F+ R + P+ D ++ + + ++ + HL P QIDIF V
Sbjct: 98 E---LYCDFKFSPFACIHR-KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANV 153
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS---AGGPD 180
L+ DG +A I AA LAL DA I M DIVT+ + + LD E+ GG
Sbjct: 154 LEDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTLAEERLCLEGGKS 213
Query: 181 -----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+T+ L TLD+ + + + ++ Q E +A ++++
Sbjct: 214 GNHGVITLAKLHTLDQTSEILQAGDISLEKLKEACQRLNEANNEIAPVVQQM 265
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMLYSDTGRLN 97
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T +R D + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 98 CNVSYTTFAT--PIRGQGTDNK--EYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S ++D E++ + V +P
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLMVAYMPAR 213
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T L + + + ++L ++ C + + +RE
Sbjct: 214 KEITQLTLTGEWSDGKITNAVELCMDACSKLCDILRE 250
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 42/262 (16%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I + GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKPK----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFV 121
+V ++A FS DR ++ GDR+ ST+++ +R + + THL P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY-----------------LNST 164
VL +DG +ACINA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193
Query: 165 --PLLDLNYVEDSAGGPDVTVG---ILPTLDK------------VTLLQMDAKLPTNTFE 207
PLLD++ E+ P +TV PT D ++++QM++ + + E
Sbjct: 194 LDPLLDMSMPEEQE-LPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLE 252
Query: 208 DVMQLAIEGCKAVANYIREVRK 229
+ + ++GCK V + V K
Sbjct: 253 TMFAVGLDGCKQVREILNGVLK 274
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 5/217 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 40 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMLYSDTGRLN 98
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+TG +R D + E S ++ + +E ++ P++ +D+F VL++ G
Sbjct: 99 CNVSYTTFATG--IRGQGLDNK--EYSEMLHKALEGAVMLDTFPKTTVDVFALVLESGGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S L ++D E++ + V +PT
Sbjct: 155 DLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGLLVSYMPTR 214
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T L + + + ++L ++ C + +RE
Sbjct: 215 KEITQLTLTGEWSDGKITNAVELCMDACSKLCEILRE 251
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 1/225 (0%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G R+DGR R G V A GSA E G+TKVI +V+GPRE K++ SD
Sbjct: 22 SSDGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRE-SKKAEAFSD 80
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C +F+T R + + ++S ++ +++ + P++ +D+F VL
Sbjct: 81 AGRLNCNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVL 140
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVG 184
Q+ GG + A+LAL DAGI + D+V + S + LLD + E++ + V
Sbjct: 141 QSGGGDLPVIVTCASLALADAGIVLYDLVAAVSVSSIQGQVLLDPSTSEENCEDGSLMVA 200
Query: 185 ILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+P+ ++T + M + ++ + + L ++ C + + +R K
Sbjct: 201 YMPSRKEITQVTMTGEWSSSRASESLDLCLDACAKIGDVMRSCLK 245
>gi|295663905|ref|XP_002792505.1| 3' exoribonuclease family [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279175|gb|EEH34741.1| 3' exoribonuclease family [Paracoccidioides sp. 'lutzii' Pb01]
Length = 296
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 42/263 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKP--------KGDRR-STEISLVIRQTMEACILTHLMPRSQI 117
++ ++A FS DR +K GDR+ ST++++ +R + + THL P S I
Sbjct: 74 VISVAVNIAGFSGVDRKKKSLAAGGGGGGGDRQASTDLAVALRDAFQPHLHTHLYPHSTI 133
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY----------------- 160
+ + VL +DG +ACINA TLAL DAGIPM ++ +C+ G
Sbjct: 134 SLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMKRVGG 193
Query: 161 LNST--PLLDLNYVED----------SAGGPDVTVGILPTLDK--VTLLQMDAKLPTNTF 206
+N + PLLD++ E+ S P + D ++++QM++ + +
Sbjct: 194 INESLDPLLDMSMPEEQELPFMTVANSNPAPSGHDSMDDEEDNQMLSVVQMESGVHISYL 253
Query: 207 EDVMQLAIEGCKAVANYIREVRK 229
E + + ++GCK V + V K
Sbjct: 254 ETMFAVGLDGCKQVREILNGVIK 276
>gi|443688633|gb|ELT91268.1| hypothetical protein CAPTEDRAFT_224286 [Capitella teleta]
Length = 176
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 11/151 (7%)
Query: 72 YSMANFSTGDRM-RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT 130
+S NF + + R P G I V R + + + P + F VLQ+DGG
Sbjct: 12 FSFPNFPGRNLLPRNPSG------IPYVKRSSQQFLAFRFVWPSGR---FHHVLQSDGGN 62
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG-GPDVTVGILPTL 189
+NAATLAL DAGIPM+D V +CSA ++ T LLD+NY+E+S+G ++ V LP
Sbjct: 63 YCCSVNAATLALIDAGIPMKDYVCACSASFIKDTALLDINYLEESSGRSAELVVATLPKW 122
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
D+V LL+MD +L + V+ A++GCK V
Sbjct: 123 DQVVLLEMDGRLHEDHLNKVLDTAVKGCKDV 153
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 42/262 (16%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I + GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKPK----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFV 121
+V ++A FS DR ++ GDR+ ST+++ +R + + THL P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY-----------------LNST 164
VL +DG +ACINA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193
Query: 165 --PLLDLNYVEDSAGGPDVTVG---ILPTLDK------------VTLLQMDAKLPTNTFE 207
PLLD++ E+ P +TV PT D ++++QM++ + + E
Sbjct: 194 LDPLLDMSMPEEQE-LPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLE 252
Query: 208 DVMQLAIEGCKAVANYIREVRK 229
+ + ++GCK V + V K
Sbjct: 253 TMFAVGLDGCKQVREILNGVLK 274
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMMYSDIGRLN 97
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T +R D + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 98 CNVSYTTFAT--PVRGQGADNK--EYSSMLYKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S ++D E++ + V +P
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLVVAFMPAR 213
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + + ++L ++ C + + +R+ K
Sbjct: 214 KEITQLTLTGEWSDGRITNAVELCMDACSKLGDILRDHLK 253
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMMYSDVGRLN 97
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T +R D + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 98 CNVSYTTFAT--PVRGQGADNK--EYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI M D+VTS S ++D E++ + V +P
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMPAR 213
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T L + + + ++L ++ C + + +R+
Sbjct: 214 KEITQLTLTGEWSDGRITNAVELCMDACSKLGDILRD 250
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 5/223 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+ LR DGR + R G V A GSA E GNTKVI +V+GPRE K+ SD
Sbjct: 32 DWLRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVG 90
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S F+T R D + E S ++ + +E I+ P++ +D+F VL++
Sbjct: 91 RLNCNVSCTTFAT--PARGLGSDNK--EFSSMLHKALEGAIMLETFPKTTVDVFALVLES 146
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
G I+ A+LAL DAGI M D+V S L ++D E+S + + +
Sbjct: 147 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCM 206
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+ +VT L + + T + MQL ++ C + +R K
Sbjct: 207 PSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLK 249
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 5/223 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+ LR DGR + R G V A GSA E GNTKVI +V+GPRE K+ SD
Sbjct: 32 DWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVG 90
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S F+T R D + E S ++ + +E I+ P++ +D+F VL++
Sbjct: 91 RLNCNVSCTTFAT--PARGLGSDNK--EFSSMLHKALEGAIMLETFPKTTVDVFALVLES 146
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
G I+ A+LAL DAGI M D+V S L ++D E+S + + +
Sbjct: 147 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCM 206
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+ +VT L + + T + MQL ++ C + +R K
Sbjct: 207 PSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLK 249
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 113/210 (53%), Gaps = 5/210 (2%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R P R + G ++A GS+ E G+TK++A+VYGPR+V+ Q + C++
Sbjct: 38 RDPRRQRPVYIRAGQTSQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDFR 97
Query: 74 MANFSTGDRMRKPKGD-RRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRS 132
A FS + R P + R E+SL +++ + + PR+Q++++V VL+ G +
Sbjct: 98 RAPFSGRGKRRVPSSNNREEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGGAILA 157
Query: 133 ACINAATLALQDAGIPMRDIVTSCS---AGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
+ I AA+LAL DAGI M D+V++CS +G LLD E+ +TV ++P
Sbjct: 158 SGIIAASLALADAGIEMFDLVSACSLVLSGDAEPVWLLDPVLYEEQQACGGLTVALMPVR 217
Query: 190 DKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
++V+ LL + + ++L +EGC+
Sbjct: 218 NEVSGLLGSSEGCSAEVWAEGVRLGMEGCQ 247
>gi|405978444|gb|EKC42833.1| Exosome complex exonuclease MTR3 [Crassostrea gigas]
Length = 426
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
Query: 27 GNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86
G +++A GSA E TKV+ AVYGPREV K ++ S + + CE+ A FS R R+
Sbjct: 206 GIISQARGSAYIEQNETKVMCAVYGPREV-TKKEEFSMKGQLTCEFKFATFSCRVR-RQY 263
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG 146
+ D + S ++ +E + P++Q++++V VLQ DG +A + A++AL +AG
Sbjct: 264 QQDNEERDYSCQLQDALEPAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALANAG 323
Query: 147 IPMRDIVTSCSAGYLNSTPLLDLNYVED-------SAGGPDVTVGILPTLDKVTLL 195
I M D+V CSA S +D ED AG VT+G++P+L++V+ +
Sbjct: 324 IEMYDLVVGCSARITPSEVFIDPTESEDYKAENDNEAGNGSVTLGLMPSLNQVSAI 379
>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
gi|392867950|gb|EAS33670.2| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 298
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 131/265 (49%), Gaps = 45/265 (16%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQQMSDQAL 67
LRLDGRR E+R ++A+I + GS+ MGNT V+ V+GP E + +++ A+
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 68 VRCEYSMANFSTGDRMRKP-----------KGDRR-STEISLVIRQTMEACILTHLMPRS 115
V ++A F+ DR +K GDR+ +TE+S +R + + TH+ P S
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY--------------- 160
I + V VL +DG +ACINA TLAL DAGIPM ++ +C+ G
Sbjct: 134 TISVHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193
Query: 161 ---LNST--PLLDLNYVEDSAGGPDVTVG-----------ILPTLDKVTLLQMDAKLPTN 204
+N + PLLDL+ E+ P +TV +++++M++ + +
Sbjct: 194 VGGINESLDPLLDLSRPEELEL-PHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHIS 252
Query: 205 TFEDVMQLAIEGCKAVANYIREVRK 229
E V + I+GCK V + V K
Sbjct: 253 YLETVFAVGIDGCKQVREILNGVLK 277
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G V+ A GSA E GNTKVI +V+GPRE K+ SD +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVFSDVGRLN 92
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F++ + D + E S ++ + +E I+ P++ +D+F VL++ G
Sbjct: 93 CNVSYTTFASPTLGQGT--DHK--EYSSMLHKALEGVIIMETFPKTTVDVFALVLESGGS 148
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
S I+ A+LAL DAGI M D++T+ S + + ++D E+ + +P+
Sbjct: 149 DLSVVISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 208
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + T + MQL ++ C + +R++ K
Sbjct: 209 YEITQLTVTGEWTTPNINEAMQLCLDACSKLGEIMRDLLK 248
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G A GSA E G TKVI +V+GPRE K+ SD +
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMLYSDTGRLN 99
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S F+T +R D + E S ++ + +E ++ H P++ +D+F VL++ G
Sbjct: 100 CNVSYTTFAT--PIRGQGMDNK--EYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 155
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
I+ A+LAL DAGI + D+VTS S ++D E++ + V +P
Sbjct: 156 DLPIIISCASLALADAGIMIYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSIMVAYMPAR 215
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++T L + + + ++L ++ C + + +RE
Sbjct: 216 KEITQLTLTGEWSDGKITNAVELCMDACSKLCDILRE 252
>gi|84999242|ref|XP_954342.1| exosome complex exonuclease rrp41 [Theileria annulata]
gi|65305340|emb|CAI73665.1| exosome complex exonuclease rrp41, putative [Theileria annulata]
Length = 245
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 21/235 (8%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-----NVAKADGSAVFEMGNTKV----IAAVYG 51
++++S EGLR+DGRR E+R + G + DG + G K+ + VYG
Sbjct: 4 IDYISIEGLRIDGRRKDELRNTKIFFGSETSVDFLNYDGVSEILQGLNKLEVKGVKNVYG 63
Query: 52 PREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL 111
E ++ ++CE + ST +++ +R ++++ ++ T + I++H
Sbjct: 64 ILE---------EKVDIQCEILL---STDKKVKNSPNERLIKDLAMAVKSTYQEMIISHC 111
Query: 112 MPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171
S I IF+ +++ DG +S +NA LAL DAG+ ++DIV+S + YL+ST L D N
Sbjct: 112 YKTSAISIFINIIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYLDSTVLTDPNQ 171
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+E +A + + + + + + +K+ F+ + + G + Y+R+
Sbjct: 172 MEINASTATLCIAFSSSNNNIIYMDYKSKIALEDFKSLFDSCLAGSRIFTEYVRQ 226
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 7/218 (3%)
Query: 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ 65
P R DGR ++R + + G V +A GSA E G TKV+ AVYGP+ S + +
Sbjct: 31 PSDSRRDGRLAAQVRPIFLQPGLVTEAAGSAYIEAGRTKVLCAVYGPKPTP-PSAPFNPK 89
Query: 66 ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
A + E A F++G R P D +T ++ V++Q++ +L +P+SQID+FV VL+
Sbjct: 90 ARLNVEIKFAPFASGVRRYVPGKDTEATGLAAVLQQSLLPSLLLETLPKSQIDLFVTVLE 149
Query: 126 ADGGTR--SACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDLNYVEDSAGGP 179
+DG S + AA++AL +AGIPMR +VT+CSA L + + +LD E
Sbjct: 150 SDGWDNDLSIGVTAASVALAEAGIPMRGLVTACSATLLPTPNSKSAILDPTRDEARESSA 209
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
V++ +P L VT L++ + + D + A E C
Sbjct: 210 FVSLACMPALGTVTSLRLSGAMEPDLLADTLAKAHEVC 247
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 127/248 (51%), Gaps = 40/248 (16%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LRLDGRR E+R ++A+I + GS+ MGNT VI V+GP E + + + A
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 67 LVRCEYSMANFSTGDRMRKPK----GDRR-STEISLVIRQTMEACILTHLMPRSQIDIFV 121
+V ++A FS DR +K GDR+ ST+++ +R + + TH+ P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY-----------------LNST 164
VL +DG +ACINA TLAL DAGIPM ++ +C+ G +N +
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 165 --PLLDLNYVEDSAGGPDVTVG---ILPTLDK----------VTLLQMDAKLPTNTFEDV 209
PLLD++ E+ P +TV PT D ++++QM A + + E +
Sbjct: 194 LDPLLDMSMPEEQE-LPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 252
Query: 210 MQLAIEGC 217
+ ++GC
Sbjct: 253 FAVGLDGC 260
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 107/223 (47%), Gaps = 5/223 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+ LR DGR + R G V A GSA E GNTKVI +V+GPRE K+ SD
Sbjct: 32 DWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVG 90
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S F+T R D + E S ++ + +E I+ P++ +D+F VL++
Sbjct: 91 RLNCNVSCTTFAT--PARGLGSDNK--EFSSMLHKALEGAIMLETFPKTTVDVFALVLES 146
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
G I+ A+LAL DAGI M D+V S L ++D E+S + + +
Sbjct: 147 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCM 206
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+ +VT L + + T + M L ++ C + +R K
Sbjct: 207 PSRYEVTQLSITGEWSTAKLNEAMHLCLDACSKLDKIMRACLK 249
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 52/263 (19%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LRLDGRR E+R L+A+I + GS+ MGNT V+ V+GP E K + + A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAE--GKRSETAGAAAQ 71
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
+ + S GDR + +TE++ +R + I HL PRS I + V VL +DG
Sbjct: 72 K-KKSTTGSGGGDR-------QATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDG 123
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGY------------------LNST--PLLD 168
+AC+NA TLAL DAGIPM ++ +C+ G +N + PLLD
Sbjct: 124 SLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINESLDPLLD 183
Query: 169 LNYVE----------DSAGGPDVTVGILPTLDK------------VTLLQMDAKLPTNTF 206
++ E ++ PD+TV ++ ++++ MD+ + +
Sbjct: 184 ISAPEEVELPYMTVANTNPMPDITVPKDGEDEEDDEYDAENENQMLSIVHMDSGVHVSYL 243
Query: 207 EDVMQLAIEGCKAVANYIREVRK 229
E + + I+GCK + V K
Sbjct: 244 ETMFAVGIDGCKQTREILNGVLK 266
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 29/250 (11%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ + E R DGR T+ R + + G + +A GSA FEM TKVI +VYGP++++ + +
Sbjct: 26 LSLLDDEEKRADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREE 85
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPK-GDR----RSTEISLVIRQTMEACILTHLMPRS 115
++ ++CE A +S+ PK GD E S ++ + + + + P+S
Sbjct: 86 FQINKGKLKCELKYAPYSS------PKHGDHIPGASDVEKSDILLEAISSGVCLQRYPKS 139
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---AGY----LNSTPL-- 166
QID++V VL+ DG A I AA++AL DAGI M D++T+ S AG ++ T
Sbjct: 140 QIDVYVIVLEDDGSVMPAAITAASVALVDAGIEMYDVITASSIRIAGQDTFIIDPTSSEE 199
Query: 167 ---LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANY 223
L+L D G V V +LP++++V+ + L N V+Q AI C+ A
Sbjct: 200 FSPLNLEKSNDLNQGM-VMVALLPSINQVSSVVSSGHLECN----VLQEAIRSCRYSAQN 254
Query: 224 IRE-VRKFLL 232
+ VRK L+
Sbjct: 255 LHSIVRKCLV 264
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 6/150 (4%)
Query: 30 AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST-GDRMR-KPK 87
A GSA+ +G TKV+ + GP + +S+++ D+A + A F+ GDR P
Sbjct: 105 AGCSGSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRRNVNPT 164
Query: 88 GDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGI 147
DRR E S ++++ + A IL HL PRS+I + V VL DGG A INAATLAL DAGI
Sbjct: 165 TDRRLVEASHLLQRALSASILLHLFPRSKISVTVMVLADDGGRLEASINAATLALMDAGI 224
Query: 148 PMRDIVTSCSAGYLNSTP----LLDLNYVE 173
P+RD+V +CSAG ++ ++DLN E
Sbjct: 225 PLRDMVCACSAGRWSAGGTDEIIVDLNRKE 254
>gi|303323507|ref|XP_003071745.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240111447|gb|EER29600.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035116|gb|EFW17058.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 298
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 45/265 (16%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQQMSDQAL 67
LRLDGRR E+R ++A+I + GS+ MGNT V+ V+GP E + +++ A+
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 68 VRCEYSMANFSTGDRMRKP-----------KGDRR-STEISLVIRQTMEACILTHLMPRS 115
V ++A F+ DR +K GDR+ +TE+S +R + + TH+ P S
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY--------------- 160
I + V VL +DG +ACINA TLAL DAGIPM ++ +C+ G
Sbjct: 134 TISLHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193
Query: 161 ---LNST--PLLDLNYVEDSAGGPDVTVG-----------ILPTLDKVTLLQMDAKLPTN 204
+N + PLLDL+ E+ P +TV +++++M++ + +
Sbjct: 194 VGGINESLDPLLDLSRPEELEL-PHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHIS 252
Query: 205 TFEDVMQLAIEGCKAVANYIREVRK 229
E + + I+GCK V + V K
Sbjct: 253 YLETMFAVGIDGCKQVREILNGVLK 277
>gi|443708056|gb|ELU03350.1| hypothetical protein CAPTEDRAFT_146569, partial [Capitella teleta]
gi|443726159|gb|ELU13440.1| hypothetical protein CAPTEDRAFT_126626, partial [Capitella teleta]
Length = 123
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG-GPD 180
QVLQ+DGG +NAATLAL DAGIPM+D V +CSA ++ T LLD+NY+E+S+G +
Sbjct: 1 QVLQSDGGNYCCSVNAATLALIDAGIPMKDYVCACSASFIKDTALLDINYLEESSGRSAE 60
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ V LP D+V LL+MD +L + V+ A++GCK V
Sbjct: 61 LVVATLPKWDQVVLLEMDGRLHEDHLNKVLDTAVKGCKDV 100
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 2 EFVSPEGLRLDGRRPTEMRQ------------------LRAEIGNVAKADGSAVFEMGNT 43
E V P G R DGR TE R+ L + G V++A GSA E+ T
Sbjct: 34 EIVQPNGTRADGRTSTEHRKICNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYIELDQT 93
Query: 44 KVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTM 103
KVI +V+ PRE+ NK+ S + + CE+ A FS R R + D + S +++Q +
Sbjct: 94 KVIVSVFDPREIPNKTD-YSSKGEIYCEFKFAPFSCHKR-RLHQQDAEEQQFSAIMKQAL 151
Query: 104 EACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS 163
E+ + H P Q+DI+ VL DG SA I AA +AL AGIPM D++TS + +
Sbjct: 152 ESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGN 211
Query: 164 TPLLD 168
L+D
Sbjct: 212 HLLVD 216
>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 278
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E + +R DGR + R++ + G V +A GSA E+ NTKV+ +V+ PRE+ S+
Sbjct: 34 EILDNNKIRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSE- 92
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + CE+ A F +R KG D ++S+++++++E + H P Q+D
Sbjct: 93 FTPNGEIYCEFKFAPFYGLER----KGHIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVD 148
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED---- 174
++ +L DG SA I AA LAL DAGIPM DI+TS + G N +D N+ E+
Sbjct: 149 VYALLLDNDGSCLSAAITAAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEEKFCK 208
Query: 175 ------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++ +++ +P + +VT + + NT M L I CK +++ ++
Sbjct: 209 SFFKNKTSEIGIISLSYMPEMAQVTEITQSGTVSINTILKSMDLLISKCKTISDLTKK 266
>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
Length = 138
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 111 LMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDL 169
L P SQIDI+++VLQADG C+NAATLAL DAGIP+++ + +CSA N PL+D+
Sbjct: 2 LYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYIIACSASLGNGDVPLIDV 61
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+++E+S GG ++T+ LP ++T+L+M K + V+ A+ GC+ + + K
Sbjct: 62 SHLEESLGGSNLTIAALPLSGQITVLEMSQKFHIDHLPQVLNEAMNGCQQIYKILDSAVK 121
Query: 230 FLLIAVDIV 238
L V +
Sbjct: 122 THLTEVGTI 130
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 5/220 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G V+ A GSA E GNTKVI +V+GPRE K+ SD +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 92
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S NF++ + D + E S ++ + +E I+ P++ +D+F VL++ G
Sbjct: 93 CNVSYTNFASPTLGQGT--DHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 148
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
S I+ A+LAL DAGI M D++T+ S + + ++D E+ + +P+
Sbjct: 149 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 208
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
++T L + + T + MQL ++ + +R+ K
Sbjct: 209 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLK 248
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 6/213 (2%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR + R G V A GSA E GNTKVI +V+GPRE K+ SD +
Sbjct: 34 VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRL 92
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
C S FST R + + + + S ++ +++E I+ P++ +D+F VL++ G
Sbjct: 93 NCSVSYTTFSTPVRGQGSE----NKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 148
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
I+ A+LAL DAGI + D+V S S L+D E++ + + +P+
Sbjct: 149 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPS 208
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEG-CKAV 220
+VT L + + T+ + MQL ++ CK V
Sbjct: 209 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLV 241
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 5/227 (2%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ + +R DGR + R G V A GSA E GNTKVI +V+GPRE K+
Sbjct: 25 LIKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMLY 83
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
SD + C S F+T +R D + + S ++ + + I+ P++ +D+F
Sbjct: 84 SDVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFAL 139
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VL++ G I+ A+LAL DAGI M D+V S S L+ ++D E++ +
Sbjct: 140 VLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVIDPISEEENCQDGSIM 199
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ +P+ ++T L + + T + MQL ++ C +A +R K
Sbjct: 200 ITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKVMRSCLK 246
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Query: 25 EIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84
+IG V++ GS+ EM NTKV+ ++GPR Q ++ + A + CE FS+
Sbjct: 2 KIGVVSQGSGSSYVEMENTKVLCTIHGPRATQK--TELFETAKLNCELKYTTFSSTTEKI 59
Query: 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD 144
+ + ++SL+I Q++ I P++ IDI++ VL DG A I AAT+AL D
Sbjct: 60 DYVENSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATMALAD 119
Query: 145 AGIPMRDIVTSCSAGYL-NSTPLLDLNYVEDS-AGGPDVTVGILPTLDKVTLLQMDAKLP 202
AG+ M D+V+SCS ++ L+D +E++ V V +P+L+++T + +L
Sbjct: 120 AGVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPSLNEITQIIQTGELQ 179
Query: 203 TNTFEDVMQLAIEGCKAVANYIRE 226
+ + L I+GC + + +++
Sbjct: 180 YTNVLECVDLCIDGCDKIYSIMKQ 203
>gi|426200127|gb|EKV50051.1| hypothetical protein AGABI2DRAFT_63232 [Agaricus bisporus var.
bisporus H97]
Length = 261
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 9/218 (4%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R P ++R + + G + +A+GSA E +TK+ AVYGPR+ +N S S+ + E
Sbjct: 39 RGPLDVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKNVS--YSESGHLNVEVK 96
Query: 74 MANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--GTR 131
A FS R R P D I++ + Q + + + L+P+S ID+FV V++ADG G
Sbjct: 97 FAPFSC-RRRRAPLRDAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADGIEGVI 155
Query: 132 SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDK 191
++ A + AL DAGI + +V SCSA + LD + E S + V +P L
Sbjct: 156 ASASIAVSTALADAGIEILGLVVSCSASLIGGGIWLDPSEDEISCSEGTIIVSCIPALGT 215
Query: 192 VTLLQMDAKLPTNTFEDVMQLAIEGC----KAVANYIR 225
VT + ++P + D M+ C K VA +R
Sbjct: 216 VTSIWQGGQIPLKSVVDAMEKCQSRCTDIHKIVAQALR 253
>gi|409082295|gb|EKM82653.1| hypothetical protein AGABI1DRAFT_97612 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 261
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 9/218 (4%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R P ++R + + G + +A+GSA E +TK+ AVYGPR+ +N S S+ + E
Sbjct: 39 RGPLDVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKNVS--YSESGHLNVEVK 96
Query: 74 MANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--GTR 131
A FS R R P D I++ + Q + + + L+P+S ID+FV V++ADG G
Sbjct: 97 FAPFSC-RRRRAPLRDAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADGIEGVI 155
Query: 132 SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDK 191
++ A + AL DAGI + +V SCSA + LD + E S + V +P L
Sbjct: 156 ASASIAVSTALADAGIEIFGLVVSCSASLIGGGIWLDPSEDEVSCSEGTIIVSCIPALGT 215
Query: 192 VTLLQMDAKLPTNTFEDVMQLAIEGC----KAVANYIR 225
VT + ++P + D M+ C K VA +R
Sbjct: 216 VTSVWQGGQIPPKSVVDAMEKCQSRCTDIHKIVAQALR 253
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 35/244 (14%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
R + RQ+ + G V++A GSA E+ NTKVI +V+GPR + ++ + A CE
Sbjct: 54 NRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPR--ASPKTELFESAKFSCEL 111
Query: 73 SMANFS-TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR 131
A+F+ G+R+ + + ++S+ +RQ++ I P++ ID++V VL DGG
Sbjct: 112 KFASFARPGERIDYMESAKEK-DLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGGVL 170
Query: 132 SACINAATLALQDAGIPMRDIVTSCS-------------------------AGYLNSTPL 166
A I AA++AL DAG+ M D+V++CS A + S+ L
Sbjct: 171 VAAITAASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSSIL 230
Query: 167 LDLNYVE----DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
LD E DS G V V +P+L+++T + +L N D + L I+GC + +
Sbjct: 231 LDPTLQEEESKDSLGC--VVVAKMPSLNEITQIIQTGELSYNNTIDGIDLCIDGCDKIYS 288
Query: 223 YIRE 226
+++
Sbjct: 289 IMKQ 292
>gi|397669729|ref|YP_006511264.1| tRNA nucleotidyltransferase [Propionibacterium propionicum F0230a]
gi|395141466|gb|AFN45573.1| tRNA nucleotidyltransferase [Propionibacterium propionicum F0230a]
Length = 239
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 28/240 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA----VYGPREVQNKSQQMSD 64
LR+DGRR ++R++R G + A+GS + E G T+V+ A V PR ++ +
Sbjct: 3 LRIDGRRADQLREVRITRGWLDHAEGSVLVEFGKTRVLVAASVTVGVPRWRRD-----TG 57
Query: 65 QALVRCEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
V EYSM A S DR +R G R + EIS ++ +++ A + + + I +
Sbjct: 58 LGWVTAEYSMLPRATHSRSDRESVRGRIGGR-THEISRLVGRSLRAVVDYSALGENTIVL 116
Query: 120 FVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA G P++D V + S G++ PLLD
Sbjct: 117 DCDVLQADGGTRTAAITGAYVALADAVAHLRELDVLKGEPLKDSVAAVSVGFVEGVPLLD 176
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTN--TFEDVMQLAIEGCKAVANYIRE 226
L Y EDS G D+ + + + D + + + P N ++ L GC + RE
Sbjct: 177 LAYEEDSQAGTDMNIVMTGSGDFIEVQGTAERTPFNRADLNQLLDLGAAGCAELTRLQRE 236
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 13/207 (6%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R EMR++ + G V++A GSA E+GNTKV+ +V+ PREV NK+ + Q +
Sbjct: 37 RSDKRTNNEMRKIFLKAGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNSYYA-QGEIY 95
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
CE+ A FS R + + + + SL++++ +E + H P Q+D++V VL G
Sbjct: 96 CEFKFAPFSCQKR-KVHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG--PD------- 180
+ +A I AA+ AL +AG+PM +VT+ + G ++ L+D +E++ PD
Sbjct: 155 SLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDIEEAICNTQPDNQGDFNH 214
Query: 181 --VTVGILPTLDKVTLLQMDAKLPTNT 205
+T+ LP ++++ + + + TN+
Sbjct: 215 GIITLASLPQHNQISEVFLIGSINTNS 241
>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
Length = 155
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK--SQQMSDQA 66
LR+DGRR E+R+L+A+I ADGS+ E+G+TKV+ V GP E Q + + S A
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V +A FS+ DR + + D+R +E+ + + + + THL P S I I + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 127 DGGTRSACINAATLALQDAG 146
DG +A +NA TLAL DAG
Sbjct: 133 DGSLLAALLNATTLALVDAG 152
>gi|294927834|ref|XP_002779184.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
gi|239888189|gb|EER10979.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
Length = 192
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+A+V Y ++F+T DR R+ GDR STE L +++ ++ +LT + P+S ID+ + +L
Sbjct: 6 EAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVHLTIL 65
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDLNYVE-DSAGGPDVT 182
Q DG +AC+NAA AL DAGIP++D+ ++C+ G +N+ P++DLN+ E + GG VT
Sbjct: 66 QEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAESEGCGGAVVT 125
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
V + ++ L ++ K+ +FE LAIEG +R +R F+
Sbjct: 126 VAVYQRRKELNYLCLEGKINIESFESAANLAIEG---AVTAVRAMRTFI 171
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 17/225 (7%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRC--- 70
R ++R + G ++A GSA E G TK++ VYGPRE + K D+ +RC
Sbjct: 40 REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERK-----DETDMRCGRL 94
Query: 71 --EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
+ A FS +R +G + + S ++ ++++ + H PRSQI++ + VL+ G
Sbjct: 95 TADVRFAPFSCPERGSWIQGSQ-DRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGG 153
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS------AGGPDVT 182
+ + A++AL DAGI M D+V CS ++ + D Y E+S +T
Sbjct: 154 SVLAHAVTCASVALADAGIQMYDLVLGCSLRQDGASFVADPTYAEESGRAGPGGPRGGLT 213
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
V LP+L++++ L+ D ++ +T ++ IEGC + +R+V
Sbjct: 214 VAFLPSLNQISGLRSDGEMAEDTLRAGVRTCIEGCYKLYPVVRQV 258
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Query: 25 EIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84
+ G A GSA E G TKVI +V+GPRE K+ SD + C S F+T +R
Sbjct: 2 QTGPTTAASGSAYAEFGKTKVIVSVFGPRE-SKKAMMYSDVGRLNCNVSYTTFAT--PVR 58
Query: 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD 144
D + E S ++ + +E ++ H P++ +D+F VL++ G I+ A+LAL D
Sbjct: 59 GQGADNK--EYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALAD 116
Query: 145 AGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTN 204
AGI M D+VTS S ++D E++ + V +P ++T L + +
Sbjct: 117 AGIMMYDLVTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMPARKEITQLTLTGEWSDG 176
Query: 205 TFEDVMQLAIEGCKAVANYIRE 226
+ ++L ++ C + + +R+
Sbjct: 177 RITNAVELCMDACSKLGDILRD 198
>gi|443707474|gb|ELU03042.1| hypothetical protein CAPTEDRAFT_117513 [Capitella teleta]
Length = 124
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S G R+ GR+P E+R+++ +G ++ DGSA E GNTKV+AAV+G E S
Sbjct: 8 QLLSDRGFRVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHGLHEPATSSSI 67
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
++ + + +YSMA FS GD G ++ E+ L ++QT+EA ILTHL PRSQIDI
Sbjct: 68 LAFPSYISHQYSMAVFSAGD----VGGRKKLIEMMLHLKQTIEASILTHLCPRSQIDI 121
>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
Length = 252
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 20/242 (8%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
+P G R+DGR P ++R++R G + A+GSA+ E G T+V+ A V + +Q S
Sbjct: 7 TPAGDRIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVP-RWKQGSG 65
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ A I + + I +
Sbjct: 66 SGWVTAEYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLD 125
Query: 121 VQVLQADGGTRSACINAATLALQDA--------GIP-----MRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA +P + D V++ S G ++ PLL
Sbjct: 126 CDVLQADGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLL 185
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVANYIR 225
DL Y ED A G D+ V + + V + P + E ++ LA GC +A +
Sbjct: 186 DLEYREDVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQTQQ 245
Query: 226 EV 227
+V
Sbjct: 246 DV 247
>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
Length = 261
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 25 EIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84
++G V+ A GSA E+GNTK I +V+ PRE+ +S+ + L C++ + F++ R +
Sbjct: 11 KVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELY-CDFKFSPFASHLR-K 68
Query: 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD 144
P+ D R ++ + + + HL P Q+D+F VL+ DG +A I AA LAL D
Sbjct: 69 TPQSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGLALAD 128
Query: 145 AGIPMRDIVTSCSAGYLNSTPLLDLN----------YVEDSAGGPDVTVGILPTLDKVTL 194
A IPM DIVT+ +AG L L+D + D+ G V + LPTLD+V
Sbjct: 129 ACIPMFDIVTATTAGILGDRILVDPTAEEERLCMEGFTRDNHGI--VMLAKLPTLDQVPE 186
Query: 195 LQMDAKLPTNTF 206
++ + T
Sbjct: 187 IRHSGSVSVETL 198
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 13/207 (6%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R EMR++ + G V++A GSA E+GNTKV+ +V+ PREV NK+ + Q +
Sbjct: 37 RSDKRTNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNGYCA-QGEIY 95
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
CE+ A FS R + + + + SL++++ +E + H P Q+D++V VL G
Sbjct: 96 CEFKFAPFSCQKR-KIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG--PD------- 180
+ +A I AA+ AL +AG+PM +VT+ + G ++ L+D +E++ PD
Sbjct: 155 SLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDIEEAICNTQPDNQGDFNH 214
Query: 181 --VTVGILPTLDKVTLLQMDAKLPTNT 205
+T+ LP ++++ + + + TN+
Sbjct: 215 GTITLASLPQHNQISEVFLIGSINTNS 241
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 116/239 (48%), Gaps = 20/239 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGRR EMR + + ++A A GSA +G TK+ AVYGPR + Q D+ +
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQ--DRGSIN 104
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
E+ A F+T + +R + ++ ++ Q + A + L +S I + V VL+ DGG
Sbjct: 105 LEFRFAPFATTGK--DACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGG 162
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSA-----GYLNSTP----LLDLNYVEDSAGGPD 180
SA + LAL DAGI M D+VT SA G+ +S P LLD + E A
Sbjct: 163 LISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAFADK 222
Query: 181 ----VTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREV--RKFLL 232
V +G P L V + L T + E +++L C AVA+ +R R F L
Sbjct: 223 NCTFVDLGYCPALASVCFIHASGTLLATESGEQMLRLCEAACYAVADEVRSCLRRSFCL 281
>gi|221488740|gb|EEE26954.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 352
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 139/308 (45%), Gaps = 85/308 (27%)
Query: 3 FVSPEGLRLDGRRPTEMRQLR------------------------------AEIGNVA-- 30
F S E LR DGRRP E+R+LR +E N+A
Sbjct: 15 FPSLEFLRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPF 74
Query: 31 -------KADGSAVFEMGNTKVIAAVYGPREVQ----NKSQQM----------------- 62
ADG ++ G+TKV A V+GPR + N S+ +
Sbjct: 75 ASGGVGTHADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEG 134
Query: 63 ---------------------SDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVI 99
+++A + C +A FS R + + G E++L +
Sbjct: 135 FDASGADSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGV 194
Query: 100 RQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159
R+ +E+ IL PRS I +FV V++ DGG +A I+AA+LAL DAGI +D V + S
Sbjct: 195 RKVVESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAMSCV 254
Query: 160 YLNS--TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
Y+ TPLLD E G P +T+ +L + D+V+LLQ+D ++ T+ FE + + GC
Sbjct: 255 YMPRQLTPLLDPPRAELQTGAPSLTLAMLVSSDEVSLLQLDGQVSTDVFEQMYEACAAGC 314
Query: 218 KAVANYIR 225
+ V ++
Sbjct: 315 REVGEAMK 322
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 20/239 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGRR EMR + + ++A A GSA +G TK+ AVYGPR + Q D+ +
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQ--DRGSIN 104
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
E+ A F+T + +R + ++ ++ Q + A + L +S I + V VL+ DGG
Sbjct: 105 LEFRFAPFATTGK--DACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGG 162
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSA-----GYLNSTP----LLDLNYVEDSAGGPD 180
SA + LAL DAGI M D+VT SA G+ +S P LLD + E A
Sbjct: 163 LISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAFADK 222
Query: 181 ----VTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREV--RKFLL 232
V +G P L V ++ L T + E +++L C AVA+ +R R F L
Sbjct: 223 NCTFVDLGYCPALASVCFIRASGTLLATESGEQMLRLCEAACYAVADEVRSCLRRSFCL 281
>gi|380302959|ref|ZP_09852652.1| RNAse PH [Brachybacterium squillarum M-6-3]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 20/242 (8%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
+P G R+DGR P ++R++R + G + A+GSA+ E G T+V+ A V + ++ S
Sbjct: 7 TPAGDRVDGRTPDQLREVRIQRGWLDHAEGSALIEFGRTRVLCAASFTEGVP-RWKKGSG 65
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R + K K R+ EIS +I +++ A I + + I +
Sbjct: 66 SGWVTAEYAMLPRATDSRSQRESVKGKIGGRTHEISRLIGRSLRAIIDLEALGENTIQLD 125
Query: 121 VQVLQADGGTRSACINAATLALQD--------AGIP-----MRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL D A IP + D V++ S G ++ PLL
Sbjct: 126 CDVLQADGGTRTAAITGAYVALADAISWGKRHASIPVTREVLTDSVSAISVGIVDGRPLL 185
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVANYIR 225
DL Y ED D+ V + + V + P + E ++ LA GC ++A R
Sbjct: 186 DLEYREDVTAETDMNVVVTGSGSFVEVQGTAEGAPFDRTELGALLDLAEGGCASLAQIQR 245
Query: 226 EV 227
+V
Sbjct: 246 DV 247
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 10/220 (4%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E R DGR +R + +E G++ KADGSA F +KV+AAVYGP EV + ++ ++
Sbjct: 4 EHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKS 63
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
V ++ A F + + K K L+I+ +E+ ILT L PR+QI + +QV
Sbjct: 64 YVEVTFTPA-FGNTNYIDKEK--------ELLIKNAVESMILTTLYPRTQISVILQVFSD 114
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DG S INAA LAL DAGI M ++ S + + N + E+ + +
Sbjct: 115 DGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYVDPSTEEENQSKAIAIYSF 174
Query: 187 PTLDK-VTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+++K + L + L + + + A E C + ++I+
Sbjct: 175 SSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIK 214
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R+D R ++R + +E+ + KADGSA F + N+ V+AA+YGP EV + +++S +A V
Sbjct: 2 VRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPRKEKIS-KATV 60
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
++ +G++ + K E +IR +E+ I+T L PR+ I I +QV DG
Sbjct: 61 EVVFTP---DSGNQNYQTK------EQESLIRNAIESVIMTMLHPRTLISIIIQVYSTDG 111
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILP 187
S INAA LAL DAGI + ++ S S + + + LD E++
Sbjct: 112 SIVSCSINAACLALLDAGIELNSLIASISLSFNSDGQIYLDPTMKEENESKATAIYAFNS 171
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
L K+ +++ + ++ +QLA C+ + YIR K
Sbjct: 172 QL-KLMMIKSSGIITEQQNQEALQLARSSCERILAYIRTAVK 212
>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
Length = 351
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEI--GNV-AKADGSAVFEMGNTKVIAAVYGPREVQNK 58
E V+ G+R DGR+ TE+R+++ I GN DG+ FE G K+I ++ GP +
Sbjct: 91 EIVNKHGIRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGN 150
Query: 59 SQQMSDQALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++ + V+ C + ++ FS+ DR ++ K DR E L+I +T + I +SQ
Sbjct: 151 INYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVICDQY-SKSQ 209
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
I I + +L+ DG RSA INA ++AL +GI M+D++ S + G L DL E +
Sbjct: 210 IIINIIILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQVLYDLTQSEMES 269
Query: 177 GGPDVTVGILPTLDKV----------------TLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + I T + + + ++ KL E +M CK
Sbjct: 270 LKGTLLMAIHSTDNDIDTDTENVGNGNSDISPVTIDLNTKLKPEMIEFLMNETFSACKQF 329
Query: 221 ANYIREVRK 229
+ IR+ K
Sbjct: 330 SVIIRDFLK 338
>gi|393216797|gb|EJD02287.1| ribosomal protein S5 domain 2-like protein [Fomitiporia
mediterranea MF3/22]
Length = 262
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 5/210 (2%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR +++R + + G +++A+GSA E TK+ AVYGPR Q+K+ ++ + E
Sbjct: 42 GRSASDIRPIFLKTGLISQANGSAYIETEKTKIACAVYGPR--QSKTSTYHEKGKLHVEV 99
Query: 73 SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--GT 130
A FS R R P D +S++I+Q++ I L+P+S IDIF+ V++ DG G
Sbjct: 100 KFAPFSCAKR-RAPMRDAEDRSVSILIQQSLTPAIRLELIPKSSIDIFLFVIENDGIEGC 158
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLD 190
SA AA+ AL A I M +V SC+A + LD E A +T+ +P L
Sbjct: 159 VSAGAIAASTALAHARIDMLGLVVSCAAATMPKEIWLDPTTEEARAARGRLTLACVPALG 218
Query: 191 KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT + ++ + E + E C+ +
Sbjct: 219 LVTNVWQTGQMSIDEVEKCIDACQEKCRDI 248
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 12 DGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCE 71
DG + + R + AE+G V++A GSA FE+GNTKV+AA YGP ++ Q + ++ C+
Sbjct: 32 DGAK-AQPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLST-SRRQGFQETCILDCD 89
Query: 72 YSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR 131
+ FS G + ++ K E+S ++ +++ C+ P+S I ++ VLQ DG
Sbjct: 90 VKFSPFS-GVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDGAAF 148
Query: 132 SACINAATLALQDAGIPMRDIVTSCS-----AGYLNSTPLLDLNYVEDSAGGP 179
SA INAA++AL +AGI M D++ + S +G L+ P D + A P
Sbjct: 149 SAVINAASMALANAGIEMFDLLAAASVCFDTSGGLHPHPTRDEEAAKVHAYNP 201
>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
Length = 238
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 2/222 (0%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S G R DGR E R + + +++A GSA E G TKV+ V+GPR+ + K +D
Sbjct: 8 STSGCRADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVK-LGFTD 66
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ CE + +F++ ++ K + + + ++Q +E + P++ D+ +L
Sbjct: 67 TGRLNCEVRLTSFAS-HKLAKSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMIL 125
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVG 184
+A G + I AA++AL DAG+ + D+V + LLD + E A + VG
Sbjct: 126 EAGGSDLAVLITAASVALADAGVELYDLVPAVQVSKQRGLLLLDPSLEESGAEEGGMLVG 185
Query: 185 ILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++P L++VT L + + ++ ++LA+ GC + +RE
Sbjct: 186 LMPELNEVTALNVRGLWADSEMQEGLELALGGCGQLKAAMRE 227
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 8/218 (3%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR +MR + ++ DGS +++ G T+VI V GPR K+Q L+
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRA---KTQS----ELLL 57
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
EYS++ FS + R K D+ + + ++++ E I+ +S+I I V V+Q DG
Sbjct: 58 IEYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGS 117
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
++SA NA TLAL DAG+ M+D + S + G ++DL E ++T+
Sbjct: 118 SKSAVFNAITLALLDAGVSMKDFLVSVTVGLDQGNLIVDLTQEESKTAQGELTISYQSRK 177
Query: 190 DKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIRE 226
K+ ++ KL + + +LA+ + +++E
Sbjct: 178 QKIDFYELKTLKLQQQEMDQLSKLAVSKADEIYQWMKE 215
>gi|385652716|ref|ZP_10047269.1| ribonuclease PH [Leucobacter chromiiresistens JG 31]
Length = 246
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQM 62
E LR DGR P + R + E G A+A+GSA+ G TKV+ PR + K
Sbjct: 3 ETLRADGRTPQQTRPVAIERGWSAQAEGSALISFGGTKVLCTASFTPGVPRWLTGKGT-- 60
Query: 63 SDQALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQID 118
V EYSM ST +RM++ KG R+ EIS +I +++ A I T + + I
Sbjct: 61 ---GWVTAEYSMLPRSTNERMQRESIKGRVGGRTHEISRLIGRSLRAVIDTKALGENTIV 117
Query: 119 IFVQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTP 165
I VLQADGGTR+A I A +AL DA P+ D V + S G ++ P
Sbjct: 118 IDCDVLQADGGTRTASITGAYVALVDAIEWARERGFIAKRAQPLTDSVAAISVGIVDGVP 177
Query: 166 LLDLNYVEDSAGGPDVTVGILPTLDKV 192
L DL YVEDS D+ V + + D V
Sbjct: 178 LTDLAYVEDSRAETDMNVVVTGSGDFV 204
>gi|237837415|ref|XP_002368005.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965669|gb|EEB00865.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|221509233|gb|EEE34802.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 352
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 85/320 (26%)
Query: 3 FVSPEGLRLDGRRPTEMRQLR------------------------------AEIGNVA-- 30
F S E LR DGRRP E+R+LR +E N+A
Sbjct: 15 FPSLEFLRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPF 74
Query: 31 -------KADGSAVFEMGNTKVIAAVYGPREVQ----NKSQQM----------------- 62
ADG ++ G+TKV A V+GPR + N S+ +
Sbjct: 75 ASGGVGTHADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEG 134
Query: 63 ---------------------SDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVI 99
+++A + C +A FS R + + G E++L +
Sbjct: 135 FDASGADSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGV 194
Query: 100 RQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159
R+ +E+ IL PRS I +FV V++ DGG +A I+AA+LAL DAGI +D V + S
Sbjct: 195 RKVVESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAMSCV 254
Query: 160 YLNS--TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
Y+ TPLLD E G P +T+ +L + +V+LLQ+D ++ T+ FE + + GC
Sbjct: 255 YMPRQLTPLLDPPRAELQTGAPSLTLAMLVSSGEVSLLQLDGQVSTDVFEQMYEACAAGC 314
Query: 218 KAVANYIREVRKFLLIAVDI 237
+ V ++ +++ + +
Sbjct: 315 REVGEAMKASPSAIILGLRV 334
>gi|357017435|gb|AET50746.1| hypothetical protein [Eimeria tenella]
Length = 320
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 124/298 (41%), Gaps = 74/298 (24%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLR----------------AEI------------GNVAKAD 33
E VSP G R DGR E RQLR AE+ G++A D
Sbjct: 5 EAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASCD 64
Query: 34 GSAVFEMGNTKVIAAVYGPRE-------------------VQNKSQQM-----SDQALVR 69
G AV +G TKV+A VYGP+ N S M Q L R
Sbjct: 65 GRAVVSLGCTKVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLAR 124
Query: 70 ----------CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
C + + R R + EI+ +R E IL L +++I I
Sbjct: 125 GELAVPVSVVCSVGLVDSCVRTRSRYTPD---AAEIAAAVRTAAEGIILRRLYTQTRITI 181
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP---------LLDLN 170
+ VL DG SA + AA+LAL DAG+ MRD++ SC+ L L+D
Sbjct: 182 SILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPT 241
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR 228
E +GGP +T+G+ + + LQ+ ++ T+E + ++ + GC A A ++ R
Sbjct: 242 SDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECMKTQR 299
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R + + G +++A GSA EMGNTK+I +V+ PREV NK+ Q +
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCV-QGELF 95
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
CE+ A FS R + + D E SL++++ +E + P Q+D++ VL G
Sbjct: 96 CEFKFAPFSHHKR-KMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
+A I AA+LAL +AG+PM +VT+ + G + T L+D E++
Sbjct: 155 ALAAAIMAASLALANAGVPMFGLVTASTVGIYDHTYLVDPTDTEET 200
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 11/203 (5%)
Query: 10 RLDGRRP--TEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
R DG R + +R L E+G + + GSA E G TKVIA+V+GPREV K S +
Sbjct: 40 RPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGI 99
Query: 68 VRCEYSMANFSTGDRMRKPKGD-RRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ EY FS+ R K ISL + QT + + HL P+S+IDIF+ VL+
Sbjct: 100 LSVEYCETPFSSSSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRIDIFITVLEN 159
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG-------- 178
DG I A LAL DA I + D+V S L+D E+ G
Sbjct: 160 DGSAIPTAITAGALALSDASINLFDLVIGASVKMSLGKALIDPCKAEEEVGDMEDAEDNR 219
Query: 179 PDVTVGILPTLDKVTLLQMDAKL 201
++ +G P+L+++ L D L
Sbjct: 220 GNIIIGYQPSLEQIAALLQDGVL 242
>gi|380027897|ref|XP_003697651.1| PREDICTED: exosome complex component MTR3-like [Apis florea]
Length = 273
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
+R D R +EMR++ + G V++A GSA E+GNTKV+ +V+ PRE+ N++ + Q
Sbjct: 35 NIRNDKRANSEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCT-QGE 93
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ CE+ A FS R + + D + SL++++ +E + H P Q+D++ VL
Sbjct: 94 IYCEFKFAPFSCQKR-KIHQQDAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNA 152
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD 168
G + +A I AA+ AL +AG+PM +VT+ + G ++ L+D
Sbjct: 153 GSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNYYLMD 193
>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
gi|189043764|sp|A5G3S1.1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
Length = 238
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 28/232 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R+++ + A+GS + E G+TKVI A+V G P ++ K
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + +L+ + I
Sbjct: 57 -GWVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA +P+++ V + S G ++ TPLLDL
Sbjct: 116 CDVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCK 218
NYVEDS+ D+ ++ + ++ +Q A+ T E D M+ LAI G K
Sbjct: 176 NYVEDSSAEVDMNF-VMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIK 226
>gi|71032567|ref|XP_765925.1| exosome complex exonuclease Rrp41 [Theileria parva strain Muguga]
gi|68352882|gb|EAN33642.1| exosome complex exonuclease rrp41, putative [Theileria parva]
Length = 259
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 13/190 (6%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-----NVAKADGSAVFEMGNTKVIAAVYGPREV 55
++++S EGLR+DGRR E R + G + DG + G KV + GP E+
Sbjct: 29 IDYISIEGLRIDGRRKDEPRNTKLFFGSETSVDYLNYDGVSEILQGLNKVQVLIKGPSEL 88
Query: 56 QNKSQQ-----MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTH 110
+ K + + ++ + CE + ST +++ +R ++++ ++ T + I++H
Sbjct: 89 EVKGAKNVYGILEEKVDIHCEILL---STEKKVKNSPNERLIKDLAMAVKSTYQEMIISH 145
Query: 111 LMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN 170
S I IF+ V++ DG +S +NA LAL DAG+ ++DIV+S + YL+ST L ++
Sbjct: 146 CYKTSSISIFINVIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYLDSTVLTGIH 205
Query: 171 YVEDSAGGPD 180
S P+
Sbjct: 206 LFYYSLLDPN 215
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 25 EIGNVAKADGSAVFEMGNTKVIAAVYGPREV--QNKSQQMSDQALVRCEYSMANFSTGDR 82
++G V+ A GSA E+GNTKVI +V+ PRE+ QN +++ + + C+ + F+ R
Sbjct: 2 KLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGE---LYCDLKFSPFACVHR 58
Query: 83 MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLAL 142
+ P+ D ++ + + ++ + HL P QIDIF VL+ DG A I AA LAL
Sbjct: 59 -KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGLAL 117
Query: 143 QDAGIPMRDIVTSCSAG------YLNSTPLLDLNYVEDSAGGPD--VTVGILPTLDKVTL 194
DA I M DIVT+ + YL+ T + +E S G +T+ L TLD+ +
Sbjct: 118 SDATISMFDIVTATTVAVYGDRIYLDPTLAEERLCLEGSRSGNHGVITLAKLHTLDQTSE 177
Query: 195 LQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+++ + + ++ Q E VA ++++
Sbjct: 178 IRLAGNVSLDLLKNACQRLNEANNDVAPVVQQM 210
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R +E G + +ADGSA G++ V+AAVYGP + +N + +D+A +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLD 67
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ ++ K + E +IRQT +LT PR+ I I VQV++ +G
Sbjct: 68 VCF---------KLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGS 118
Query: 130 TR--------SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
+ INA +LAL DAG+PM +VT+ S +L S PL DL V +S
Sbjct: 119 ISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSRLFLGS-PLRDLAQVTES 171
>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
Length = 247
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 19/230 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGRRP ++R + +A A+GS + E G TKV+ A + ++ S V
Sbjct: 3 RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +TG R K K R+ EIS +I + + AC+ +M + I I VLQ
Sbjct: 63 AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+ + V++ S G + S PLLDL Y ED
Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMRANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYEED 182
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
D+ V ++ +Q A+ + ++ LA GC +A
Sbjct: 183 VVAETDMNV-VMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELA 231
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
EF+S R DGR+ E+R R E+G + +ADGS E G T+V+AAVYGP E + ++ +
Sbjct: 3 EFLSSG--RRDGRKAYEIRGFRCELGYLERADGSCRLEQGRTQVVAAVYGPLEARGRN-E 59
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ D+ V T D +R + + +++ +A I T + PRS + I +
Sbjct: 60 LPDRTFVDVSIRPFQGYTTDYLRLRERE---------LKEIFDATIATEIQPRSCVTIVI 110
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP-LLDLNYVEDSAG 177
Q+++ DG +A INA L+L AGIP + SC+ Y LLD VE+ G
Sbjct: 111 QIIENDGSLMAAVINACMLSLLSAGIPCHWLAASCTVSYRGKDGVLLDPTLVEELEG 167
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 5/221 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS-DQALV 68
R DGR +MR + + G +++A GSA E+ TKV+ VYGPR+ ++ D+ +
Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64
Query: 69 RCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ +A F+T G R + +GD E S ++ + + ++T P++ +D+F VL+A+
Sbjct: 65 DVDVKLATFATSGPRGKVAQGDAER-EFSSIVHRALSGAVMTETFPKTTVDVFATVLEAN 123
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STPLLDLNYVEDSAGGPDVTVGI 185
G A I AA+ AL +AG+ MRD+V++C+ G + + LLD E++A VT+
Sbjct: 124 GSELCATIAAASAALCEAGVAMRDLVSACTGGGADGPNALLLDPARGEEAAAEAGVTLAY 183
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ L + + + + +D +QLA GC V +RE
Sbjct: 184 MCRLGEASQVVATGTWDGESLDDAVQLAASGCARVDAALRE 224
>gi|290559254|gb|EFD92594.1| Exoribonuclease, phosphorolytic domain 2 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 145
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 77 FSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACIN 136
FS DR KP DRR EIS VI + I+ MPR+ I++ V + QAD GTR A +
Sbjct: 2 FSVPDRA-KPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTRCASLT 60
Query: 137 AATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS----AGGPDVTVGILPTLDKV 192
A +A DAG+PMRD+V + +AG + LDL+ E+ G DV + LP+ +++
Sbjct: 61 AGAMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAFLPSKNEI 120
Query: 193 TLLQMDAKLPTNTFEDV 209
LLQ+D ++ + + V
Sbjct: 121 LLLQLDGRVSRDELKKV 137
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 23/217 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGRR E+R E G V+ A GS E G+TKV+AAV+GPREV + ++ S +A +R
Sbjct: 34 RKDGRRDEELRPRIFESGLVSDASGSGYVEQGSTKVVAAVFGPREV-TRRKEFSLKAQLR 92
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLV-------IRQTMEACILTHLMPRSQIDIFVQ 122
C ++ F+T P G R ISL+ + ++++ + P++ IDI V
Sbjct: 93 CVFTFEPFAT------PGG--RQENISLLEQRYSSWLEESLKPVVQLRRYPKASIDIRVT 144
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP--- 179
L+ DGG +A + A +AL +GI D+V + L+D ++ E+ A
Sbjct: 145 CLENDGGVLAAALTACGIALATSGIETFDLVIGVNLRAHGDRVLMDPSHAEEDAAPSREG 204
Query: 180 ---DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQL 212
+VT+G +P L ++T LLQ P + + L
Sbjct: 205 TYGNVTLGFMPVLCQITGLLQTGDSEPATLCQQISSL 241
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+ +R DGR +E R G V A GSA E GNTKVI +V+GPRE K+ SD
Sbjct: 31 DWVRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDVG 89
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ C S FST +R D + E S ++ +++E I+ P++ +D+F VL++
Sbjct: 90 RLNCNVSYTTFST--PVRGQGSDCK--EFSSMLHKSLEGAIMLETFPKTTVDVFALVLES 145
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCS 157
G S ++ A+LAL DAGI M D+V S
Sbjct: 146 GGSDLSVIVSCASLALADAGIMMYDLVAGVS 176
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 4/167 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R E+R + + G V++A GSA EMGNTKVI +V+ PRE+ NK+ Q +
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTG-FCMQGELF 95
Query: 70 CEYSMANFSTGDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
CE+ A+FS R RK + D E SL++++ +E + P Q+D++ VL G
Sbjct: 96 CEFKFASFS--HRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGG 153
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
+A I AA+LAL +AG+PM +VT+ + G T L+D +E++
Sbjct: 154 SALAAAIMAASLALANAGVPMFGLVTASTIGICKGTYLVDPTDIEEN 200
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 20 RQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79
R++ + G + +A GSA E+G+TKVI +V+ PRE+ N+ + V CE+ A FS
Sbjct: 47 RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRID-YGLKGEVYCEFKYAPFSC 105
Query: 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAAT 139
RM + + + S ++R+ +E+ + H +P Q+D++ VL+ DG SA I A
Sbjct: 106 KKRMMHQQNNEEK-QSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAIIAGG 164
Query: 140 LALQDAGIPMRDIVTSCSAGYLN 162
+AL AG+PM D +TS + G N
Sbjct: 165 VALTLAGVPMYDQITSVTLGVRN 187
>gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
Length = 238
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ ++R++R A+GS + E G+TKVI V ++ S + V
Sbjct: 1 MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASVEERV-PPHKKGSGEGWV 59
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG RM+ K K R+ EI +I +++ A + + I I V+
Sbjct: 60 TAEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +ALQDA G+ P+ D + + S G TP+LDL+Y+E
Sbjct: 120 QADGGTRTASITGAYVALQDAVSSLIEKGLLTETPVTDAIAAISVGIYQGTPVLDLDYLE 179
Query: 174 DSAGGPDVTVGIL 186
DSA D+ V +L
Sbjct: 180 DSACDTDMNVVML 192
>gi|412985413|emb|CCO18859.1| exosome complex exonuclease RRP41 [Bathycoccus prasinos]
Length = 288
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 92/196 (46%), Gaps = 19/196 (9%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKAD---GSAVFEMGNTKVIAAVYGPREVQN 57
ME+VS EGLR DGRRP E R N A+ GSA F G T +AAV+GP +
Sbjct: 1 MEYVSLEGLRNDGRRPNECRHTSCAFENPISANSCSGSAEFTFGQTTAVAAVFGPHSSLS 60
Query: 58 KS--QQMSDQAL-VRCEYSMANFSTGDRMRKPKGDRRST------------EISLVIRQT 102
S +S + L V E + A F D + K + +T E+++ Q
Sbjct: 61 TSTIDSLSIERLKVTVEITSAAFGM-DAIPKKRATNAATLMKSSKSSRKNKELAVKFEQI 119
Query: 103 MEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN 162
+ CI PRS++ + + DG +A N LAL DAGIPM D+ + A L+
Sbjct: 120 LRCCIDAKRYPRSEVYVSAATINDDGSASAALFNGIVLALVDAGIPMLDVFVAVCATRLD 179
Query: 163 STPLLDLNYVEDSAGG 178
LLD N VE+ G
Sbjct: 180 GETLLDQNEVEERGRG 195
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 22/185 (11%)
Query: 27 GNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS--QQMSDQALVRCEYSMANFSTGDRMR 84
G V+ A+GSA E+ T+V+AAVYGPRE QQ ++QA+++C+ + A F++
Sbjct: 4 GTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFAS----- 58
Query: 85 KPKGDRR-----STEISLVIRQ-------TMEACILTHLMPRSQIDIFVQVLQADGGTRS 132
P+ D R +T + RQ +++ + +S ID+FV ++ DGG +
Sbjct: 59 -PRDDARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALA 117
Query: 133 ACINAATLALQDAGIPMRDIVTSCSAGYLNSTP--LLDLNYVEDSAGGPDVTVGILPTLD 190
A IN TLAL DAGI M D+VT+ S +T L D ++E+S T + + +
Sbjct: 118 AAINCCTLALADAGIEMNDMVTAASVALAANTNIVLWDPTHLEESRASAIATQALRVSDN 177
Query: 191 KVTLL 195
VTLL
Sbjct: 178 LVTLL 182
>gi|399156520|ref|ZP_10756587.1| ribonuclease PH [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 248
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 28/234 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-------SQQ 61
LR DGR+ E R L + A+GS + GNTK+I V+NK +
Sbjct: 5 LRTDGRKNNEERPLEISLDYTMHAEGSVLVSSGNTKIICTA----SVENKVPDWLLDKDK 60
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKG--DRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
V EY M STG R ++ G D RS EI +I +++ + + ++ I I
Sbjct: 61 KPHHGWVTSEYGMLPRSTGSRRKRETGKIDGRSQEIQRLIGRSLRSVVNLSVLGEHTIWI 120
Query: 120 FVQVLQADGGTRSACIN----AATLALQD-------AGIPMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I A LAL++ P+++ + + S G +NS P+LD
Sbjct: 121 DCDVIQADGGTRTAAITGGFVALILALRNIFKTGNIKEFPVKEYLAAISVGIVNSQPMLD 180
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCKA 219
L Y ED A D+ V +L + + V +Q A+ T + E + + LA++G ++
Sbjct: 181 LKYDEDKAAEVDMNVVMLESGEFVE-VQATAEGKTYSREQLDLMLDLAVQGIRS 233
>gi|386772722|ref|ZP_10095100.1| RNAse PH [Brachybacterium paraconglomeratum LC44]
Length = 252
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 116/239 (48%), Gaps = 20/239 (8%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R+DGR P ++R++R G +A+GSA+ E G T+V+ V + ++ S
Sbjct: 10 GDRVDGRTPDQLREVRITRGWQDQAEGSALIEFGRTRVLCTASFTEGVP-RWKKGSGSGW 68
Query: 68 VRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M +T R K K R+ EIS +I +++ A I + + I + V
Sbjct: 69 VTAEYAMLPRATNTRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDV 128
Query: 124 LQADGGTRSACINAATLALQDA--------GIP-----MRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A I A +AL DA +P + D V++ S G ++ PLLDL
Sbjct: 129 LQADGGTRTAAITGAYVALADAVSWAKRHTDLPAASEVLTDTVSAISVGIVDGRPLLDLE 188
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVANYIREV 227
Y ED D+ V + T V + P + E ++ LA GC +A R+V
Sbjct: 189 YREDVTADTDMNVVVTGTGGFVEVQGTAEGTPFDRAELGTLLDLATTGCAQLAEIQRDV 247
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 4/167 (2%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E R + + G V++A GSA E+GNTK+I +V+ PRE+ NK+ Q +
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCV-QGELF 95
Query: 70 CEYSMANFSTGDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
CE+ A FS R RK + D E SL++++ +E + P Q+D++ V+ G
Sbjct: 96 CEFKFAPFS--HRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDNGG 153
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
+A I AA+LAL +AG+PM +VT+ + G + T L+D E++
Sbjct: 154 SALAAAIMAASLALANAGVPMFGLVTASTVGICDQTYLVDPTDTEEA 200
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 5/161 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
+R D R EMR++ + G V++A GSA E+GNTKV+ +V+ PRE+ N++ S Q
Sbjct: 35 NIRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCS-QGE 93
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ CE+ A FS R + + D + SL++++ +E H P Q+D++ VL
Sbjct: 94 IYCEFKFAPFSCQKR-KIHQQDAEEKQYSLILQRALEP---AHEFPNFQVDVYAMVLDNA 149
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD 168
G + +A I AA+ AL +AG+PM +VT+ + G ++ L+D
Sbjct: 150 GSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMD 190
>gi|389748864|gb|EIM90041.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 264
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 5/207 (2%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR+P ++R + + G +++A+GSA E TK+ AVYGPR+ +N S S+ + E
Sbjct: 43 GRQPLDIRPIFLKAGLISQANGSAYIEAERTKIACAVYGPRQSKNTS--YSENGRLNVEV 100
Query: 73 SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--GT 130
+ FS R R P D ++++I+Q + + L+P+S IDIFV V++ DG G
Sbjct: 101 KFSPFSCATR-RAPLRDAEDRSVAVLIQQALTPSVRLELLPKSVIDIFVTVIENDGTEGC 159
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLD 190
+A AA+ AL DAGI M +VTSCS+ + LD E + ++ +P L
Sbjct: 160 VAAASLAASTALADAGIEMLGLVTSCSSSLVGKDVWLDPTEQETTLAEGNLVFACIPALG 219
Query: 191 KVTLLQMDAKLPTNTFEDVMQLAIEGC 217
VT + ++ + M+ E C
Sbjct: 220 LVTSVWETGRMLPSQAAQCMERCQERC 246
>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 255
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 5/222 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+ R ++R + + G + +A GSA E NTK+ AV+GPR+ +N + +++
Sbjct: 32 GMPRRNRASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGPRQAKNVA--FNEKGR 89
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ + A FS DR R P D I++ I Q + + + ++P+S IDIF+ ++++D
Sbjct: 90 LNVDVKFAPFSC-DRRRAPMRDAEDRSIAMAIHQAISSSVRLDVLPKSVIDIFITIVESD 148
Query: 128 G--GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
G G +A + A+ AL DAGI + +V SCSA + LD + E + +
Sbjct: 149 GIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGEDIWLDPSLRESQESRGTLVLSC 208
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
+P L V+ + + T M C + + I +V
Sbjct: 209 MPALSTVSSIWQTGNMNTGDVLACMDACNSRCTDIHSVIAQV 250
>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
Length = 260
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQALV 68
R DGR P ++R + E A GS + G+T+VI AA+ P+ QQ +
Sbjct: 17 RSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWL 76
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +ST DR + K K D R+ EI +I +++ A + + + + I VL
Sbjct: 77 TAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVL 136
Query: 125 QADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A LA L DAG P+ D V + SAG LLDLNYVE
Sbjct: 137 QADGGTRTASITGAYLATRLAVQRLVDAGKLAENPVLDSVAAVSAGVCGGQELLDLNYVE 196
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQ---LAIEGCKAVA 221
D D + ++ + +Q + T T E ++ LA +G K +A
Sbjct: 197 DKDAEVDANI-VMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEIA 246
>gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118]
gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118]
Length = 243
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR+ R ++R ++ + G A+GS + E GNTKV+ +V ++ S Q V
Sbjct: 5 LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASVEEKV-PAHKKGSGQGWV 63
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T R + K R+ EI +I + + + L+ I + VL
Sbjct: 64 TAEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVL 123
Query: 125 QADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +A QDA P+RD V + S G ++ TPLLDL Y E
Sbjct: 124 QADGGTRTAAITGAFVAAQDAVTQLLMQGKLQLSPIRDHVAAISVGIVDGTPLLDLEYTE 183
Query: 174 DSAGGPDVTV 183
DSA D+ V
Sbjct: 184 DSACDTDMNV 193
>gi|57087309|ref|XP_546833.1| PREDICTED: exosome complex component MTR3 [Canis lupus familiaris]
Length = 272
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 22/223 (9%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------LLDLNYVEDSA 176
+L+ G +A + AA LAL DAG+ M D+V C L+ TP LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCG---LSRTPEPAPTWLLDPTRLEEER 206
Query: 177 GGPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL P ++ + ++L +EGC+
Sbjct: 207 AAAGLTVALMPVLNQVAGLLGSGEGGPPESWAEAVRLGLEGCQ 249
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 29/242 (11%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G R DGR P E+R + + ++ A GSA +GNTKV A++GPR Q D+
Sbjct: 42 GRRRDGRLPEEVRPMHLQTLSLGSASGSAFVSVGNTKVYCAIFGPRSAGRSDLQ--DRGF 99
Query: 68 VRCEYSMANF---STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
++ +Y + F S+ D G ++ L++ Q +++C+L P+S +++ L
Sbjct: 100 IKVDYRGSPFFQRSSAD------GGETQEQLLLLLHQALDSCVLLERYPKSVLEVSFMFL 153
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSA---------GYLNSTPLLDLNYVEDS 175
+ DGG +A + A LAL DAG+ DI+T SA G + LDL+ E +
Sbjct: 154 EEDGGALAAALTCAGLALADAGVECHDIITGASAFAFTYKDSSGTPHQAVCLDLDASEYA 213
Query: 176 -----AGGPDVTVGILPTLDKVTLLQMDAKLPTN-TFEDVMQLAIEGCKAVANYIREVRK 229
A + VG P L+ + L L + E + L C + REVR
Sbjct: 214 VYRHFADFTAIHVGFCPALNSICCLHCRGPLIAGPSGEQLFSLCEAACGEIG---REVRT 270
Query: 230 FL 231
L
Sbjct: 271 CL 272
>gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
Length = 238
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R DGR P ++R + G +A A+GS + E G TKV+ A VQ+ + ++ S Q
Sbjct: 3 RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAA----SVQDSVPRWRRGSGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY+M +T R + K R+ EIS +I +++ AC+ + + I I
Sbjct: 59 WVTAEYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
VLQADGGTR+A I A +AL DA G P+ D V++ S G + STPLLDL Y
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWMRERKMCKGDPLIDSVSAVSVGVVGSTPLLDLCY 178
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
ED A D+ V ++ +Q A+ ++++ L + GC + RE
Sbjct: 179 TEDVAAETDMNV-VMTGSGAFVEVQGTAEGKPFDRGALDELLDLGVAGCAELTRLQRE 235
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 11/217 (5%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R ++R + +E + KADGSA F G + V+AAVYGP +V+ ++ +++V
Sbjct: 85 RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSVVD 144
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
++ A TG+ K E +++R +E+ ILT L PR+QI++ VQV DG
Sbjct: 145 VSFTPA---TGNTTYFDK------EREMLVRNAVESIILTLLHPRTQINVIVQVYSNDGS 195
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPT 188
S INA LAL DAGI + +++S + + + + LD E++ + V + +
Sbjct: 196 IISCAINACCLALLDAGIELNCLISSITLSFTHDNQIYLDPTQKEEN-NSKGLAVYAINS 254
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
++ + + + + + + +A + C+ V+ Y R
Sbjct: 255 KSEIVMTKTTGIIGESLYFQGLNIAKQSCEKVSAYTR 291
>gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
Length = 241
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+T+V+ V + ++ S + V
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M A + GDR + K R+ EIS +I +++ A + T + + + + VLQ
Sbjct: 62 AEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA +P+RD V++ S G ++S P LDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYE 181
Query: 173 EDSAGGPDVTVGILPTLD----KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + T D +V A + ++ LA GC +A RE
Sbjct: 182 EDVRAETDMNV--VRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAALQRE 237
>gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547]
gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547]
Length = 288
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 34/236 (14%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMS 63
G R DGR P ++R +R G + A GS + E G T+V+ A PR ++ +
Sbjct: 21 GARHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGT--- 77
Query: 64 DQALVRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
V EY+M A + DR K K R+ EIS ++ + + A + T + + I I
Sbjct: 78 --GWVTGEYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVI 135
Query: 120 FVQVLQADGGTRSACINAATLALQDA--------GIP-----MRDIVTSCSAGYLNSTPL 166
VLQADGGTR+A I A +AL DA IP +RD + + S G ++ P+
Sbjct: 136 DCDVLQADGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPV 195
Query: 167 LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVM-----QLAIEGC 217
LDL+Y EDS G D+ V + + L+++ TF+ M LA +GC
Sbjct: 196 LDLDYPEDSGAGADMNVVMTGAGE---LVEVQGTAEGQTFDRAMLNALLDLAQDGC 248
>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
Length = 259
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 9/225 (4%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+ R P +R + + G + +A+GSA E G TK+ A+YGPR Q+K+ D+
Sbjct: 35 GMSRQDRLPLAIRPIFLQPGLIEQANGSAYIETGKTKIACAIYGPR--QSKNVAFHDKGR 92
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ E A FS R R P D I++ I Q + + +P+S +D+F+ VL+ D
Sbjct: 93 LNVELKFAPFSCPKR-RAPIRDAEDRSIAMAIHQAILPSVRLETLPKSTVDVFITVLEED 151
Query: 128 G--GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
G G +A AA+ AL DAGI + IV S SA + LD + E S +
Sbjct: 152 GIEGCVAAGSVAASAALVDAGIEVFGIVASTSAAVIGEEIWLDPSEQESSQSKGTFVLAT 211
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC----KAVANYIRE 226
+P L+ +T + + ++ + M++ + C VA +RE
Sbjct: 212 MPALNTITSIWQNGEMAPDQVLKAMEICEKQCVDIHTVVAERLRE 256
>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
Length = 241
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+T+V+ V + ++ S + V
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M A + GDR + K R+ EIS +I +++ A + T + + + + VLQ
Sbjct: 62 AEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA +P+RD V++ S G ++S P LDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYE 181
Query: 173 EDSAGGPDVTVGILPTLD----KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + T D +V A + ++ LA GC +A RE
Sbjct: 182 EDVRAETDMNV--VRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQRE 237
>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
Length = 254
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR P ++R++R + A+GS + E G T+V+ A PR ++ K
Sbjct: 7 RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGT----- 61
Query: 66 ALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M ST R RK K R+ EIS +I + + A I T + + I +
Sbjct: 62 GWVTSEYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDC 121
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA P+ D + + S G + P+LD
Sbjct: 122 DVLQADGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLD 181
Query: 169 LNYVEDSAGGPDVTVGILPTLDKV----TLLQMDAKLPTNTFEDVMQLAIEGC 217
L+Y EDS D+ V + + V T DA + +++ LA GC
Sbjct: 182 LDYPEDSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGC 234
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
RL+GR ++R + +E + KADGSA F T V+AAVYGP EV + ++ ++ V
Sbjct: 9 RLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILKSYVE 68
Query: 70 CEYS--MANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
++ + N + D+ E L+++ +E+ ILT L PR+Q+ + +QV D
Sbjct: 69 VTFTPALGNTTYLDK-----------EKELLVKNAVESVILTTLHPRTQVSVIIQVYSDD 117
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTS 155
G S INAA LAL DAGI M ++ S
Sbjct: 118 GSIVSCSINAACLALLDAGIEMNGLIGS 145
>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722, partial [Chlorella
variabilis]
Length = 223
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 112/207 (54%), Gaps = 9/207 (4%)
Query: 25 EIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84
+ G +++A GSA E G+TKV+ VYGPR+ + + S+Q V C+ +A+F++ R R
Sbjct: 6 KTGVISQASGSAYAEFGHTKVMVGVYGPRQSERRVG-YSEQGRVNCDVKLASFAS--RQR 62
Query: 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD 144
+ R E+S ++ +EA P++ +D+FV VL+A GG AA LAL D
Sbjct: 63 GQSAEER--ELSAALQTALEAAADLASFPKASVDVFVLVLEAGGGELGVAATAAALALAD 120
Query: 145 AGIPMRDIVTSCSAGYLNSTPLLD--LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP 202
AG+ M D+V +CS + + +LD + V GG + + ++PT +VT + +
Sbjct: 121 AGVEMFDLVAACSVSRVQGSLVLDPTADEVFREEGG--LVLALMPTSSEVTQMVSRGRWS 178
Query: 203 TNTFEDVMQLAIEGCKAVANYIREVRK 229
++ + M+LA+ GC + R+ K
Sbjct: 179 SSQLREGMELAMGGCAQLDAAARQCLK 205
>gi|390597939|gb|EIN07338.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 266
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 8/218 (3%)
Query: 12 DGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCE 71
+GR +++R + + G +++A+GSA E TK++ AVYGPR Q+KS S++ + E
Sbjct: 41 NGRGASDIRPIFLKAGLISQANGSAYIETERTKLVCAVYGPR--QSKSTSYSEKGKLNVE 98
Query: 72 YSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--G 129
A FS R R P D I+++I++++ A + L P+S IDIF+ +++ DG G
Sbjct: 99 VKFAPFSC-TRRRVPNRDAEDRPIAMLIQRSLNAAVRLELFPKSTIDIFITIIENDGIEG 157
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGY---LNSTPLLDLNYVEDSAGGPDVTVGIL 186
++ AA+ AL A I M +V SCSA + LD E + + L
Sbjct: 158 CVASGTVAASTALAQARIEMLGMVMSCSAANTADVGKELWLDPTDAESRLASGILVLACL 217
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
P L VT + K+ D M+ E C + + +
Sbjct: 218 PALGIVTNVWQSGKMIPARAIDCMKACQERCADIHSVV 255
>gi|383809882|ref|ZP_09965395.1| tRNA adenylyltransferase [Rothia aeria F0474]
gi|383447417|gb|EID50401.1| tRNA adenylyltransferase [Rothia aeria F0474]
Length = 245
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 30/245 (12%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQM 62
E R DGR E+R + G A+GSA+ E GNT+V+ PR ++ + +
Sbjct: 3 ENTREDGRACNELRPITITRGWSLNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGK-- 60
Query: 63 SDQALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
V EY+M +TG R K K R+ EIS +I +++ A I + + I
Sbjct: 61 ---GWVSAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMDALGENTIV 117
Query: 119 IFVQVLQADGGTRSACINAATLALQDA-------GI------PMRDIVTSCSAGYLNSTP 165
+ VLQADGGTR+A I A +AL DA G+ P+ D V++ S G ++ TP
Sbjct: 118 LDCDVLQADGGTRTASITGAYVALADAIGWAKKNGLIASGANPLTDSVSAISVGIIDGTP 177
Query: 166 LLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVAN 222
+LDL Y ED D+ V ++ K +Q A+ + ++ LA+EG +A
Sbjct: 178 MLDLPYTEDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELAQ 236
Query: 223 YIREV 227
REV
Sbjct: 237 IQREV 241
>gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506]
gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506]
Length = 237
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 22/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+P EMR + E G + A+GS + + G T V+ A E + + V
Sbjct: 1 MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAAT-LEERLPPWLKGQGRGWV 59
Query: 69 RCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
EY M +T +R R KP G R+ EI +I +++ + + QI +
Sbjct: 60 TAEYGMLPRATHERTRREVTAGKPSG--RTHEIQRLIGRSLRTVVDLEKLGERQITVDCD 117
Query: 123 VLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNY 171
V+QADGGTR+A I A +AL D A IP+RD + + S G ++ P LDL+Y
Sbjct: 118 VIQADGGTRTASITGAWIALHDCLSWMKTRGMLATIPLRDHIAAVSCGIVDGEPRLDLDY 177
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEG 216
VEDS+ DV + T V + K P + F ++ LA +G
Sbjct: 178 VEDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKG 224
>gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Pseudogulbenkiania ferrooxidans 2002]
gi|347538343|ref|YP_004845767.1| ribonuclease PH [Pseudogulbenkiania sp. NH8B]
gi|224603358|gb|EEG09534.1| ribonuclease PH [Pseudogulbenkiania ferrooxidans 2002]
gi|345641520|dbj|BAK75353.1| ribonuclease PH [Pseudogulbenkiania sp. NH8B]
Length = 238
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 15 RPTE-MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
RP + +R++ G A+GS + E G+TKVI V + Q V EY
Sbjct: 6 RPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASVDESVPG-FLKGKGQGWVTAEYG 64
Query: 74 MANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
M STG RMR+ K R+ EI +I +++ A + + QI I V+QADGG
Sbjct: 65 MLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQADGG 124
Query: 130 TRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
TR+A I A +AL DA G+ P+RD V + S G P+LDL+Y+EDSA
Sbjct: 125 TRTASITGAFVALHDAISGLIAQGKLQESPIRDFVAAVSVGVFEGRPVLDLDYLEDSACE 184
Query: 179 PDVTV 183
D+ V
Sbjct: 185 TDMNV 189
>gi|366166434|ref|ZP_09466189.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
Length = 258
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS---QQMSDQ 65
+R+DGR + +R+++ + A+GS + EMG+TKVI V +K ++ S +
Sbjct: 1 MRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTA----SVDDKVPPFKKNSGE 56
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EYSM STG R + K K + RS EI +I + + + + H + I I
Sbjct: 57 GWVTAEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +A+ DA IP+ D+V + S G + +LDL
Sbjct: 117 DVIQADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDMVAAVSVGIIGDEEMLDLC 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YGEDSNAVVDMNV 189
>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
Length = 259
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 5/207 (2%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR ++R + G +++A+GSA E K+ AVYGPR QNK+ S+Q + E
Sbjct: 36 GRGELDIRPIFLRPGLISQANGSAYIEADKIKIACAVYGPR--QNKNVAYSEQGRLNVEV 93
Query: 73 SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--T 130
A ++T R + P D I + I Q + A + L+P+S +DIF+ +++ADG +
Sbjct: 94 KYAPYATA-RRKAPLRDAEDRSIGVAIHQALLASVRLELLPKSTVDIFLVIIEADGKEAS 152
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLD 190
++ AA+ AL DAGI M +V+SCSA LD + E V + +P LD
Sbjct: 153 IASGAVAASAALADAGIEMLGLVSSCSAAVTGDKIWLDPSAAESEQADGTVILSCMPALD 212
Query: 191 KVTLLQMDAKLPTNTFEDVMQLAIEGC 217
VT + +LP + M + C
Sbjct: 213 SVTSVWQSGRLPPQKALECMHACQQKC 239
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 17/164 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R +E G + +ADGSA G++ V+A+VYGP + +N + +D+A +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARNWRAEKTDKATLD 67
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ + T + R E +IR+T +LT PR+ I I VQV++ +G
Sbjct: 68 VCFKLEKGITTSKER---------EYEQIIRETFTPVVLTDSFPRAVISIVVQVIEDNGS 118
Query: 130 TR-------SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPL 166
+ INA +LAL DAG+PM +VT+ S +L S PL
Sbjct: 119 ISFPLFSYYAFAINAVSLALMDAGVPMLSVVTATSKRFLGS-PL 161
>gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus marinus MC-1]
gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus marinus MC-1]
Length = 243
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 107/229 (46%), Gaps = 18/229 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR+ GRRP EMR + A+GS + G+T+V+ E Q + + D+ V
Sbjct: 5 LRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTAT-VEESQPRWMRNEDRGWV 63
Query: 69 RCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RM K K R+ EI +I + M A + + + I + V+
Sbjct: 64 TAEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTIWLDCDVI 123
Query: 125 QADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +A+ DA G+ P+RD V + S G + P LDL+Y E
Sbjct: 124 QADGGTRTASITGAFVAMHDAVTGLLKAGLIRHNPLRDHVAAVSCGMVAGMPALDLDYQE 183
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTN--TFEDVMQLAIEGCKAV 220
DS D+ + V + +P FE + LA +G KA+
Sbjct: 184 DSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKAL 232
>gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter daltonii FRC-32]
gi|254808588|sp|B9M3E3.1|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter daltonii FRC-32]
Length = 238
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 28/232 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R++R + A+GS + E G+TKVI A+V P ++ K
Sbjct: 1 MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + L+ I I
Sbjct: 57 -GWVTAEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA +P+R+ V + S G + +LDL
Sbjct: 116 CDVIQADGGTRTASITGAYVALCDALQGLVAKGELSSLPIREAVAAVSVGIVGGVAVLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCK 218
NYVEDSA D+ ++ + ++ +Q A+ T E D M+ LA++G K
Sbjct: 176 NYVEDSAAEVDMNF-VMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIK 226
>gi|333375304|ref|ZP_08467119.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330]
gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330]
Length = 242
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R E+R++R + ADGS + E GNTKVI V + +Q V EY
Sbjct: 8 RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVP-PFLRGKNQGWVTAEYG 66
Query: 74 MANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
M ST RM++ K R+ EI +I +++ AC+ + QI I V+QADGG
Sbjct: 67 MLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGG 126
Query: 130 TRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
TR+A I A +AL+ A P+ V + S G + PLLDL+Y EDS
Sbjct: 127 TRTASITGAFVALKIAVQKMLNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSGCD 186
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
DV + ++ +K+ +Q A+ +++ QL G K IRE+ ++ AV
Sbjct: 187 SDVNL-VMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKG----IRELTEWQEKAV 238
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 25/233 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R+L E +++ADGS+ F +T + AVYGP EV++ S+++ D+A V+
Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKS-SKELLDKATVQ 62
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISL---VIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ +PK + + ++RQ +E I PR+ I + VQV+
Sbjct: 63 TVF------------RPKTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP-------LLDLNYVEDSAGGP 179
DG + +N+A++AL DAG+PM ++ + + +L + LLD E +A
Sbjct: 111 DGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAADGSSERRLLLDPTLEEQTAATS 170
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKF 230
T T ++ + +L + + +++A + V ++R RKF
Sbjct: 171 IATFAFESTNQEIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLERKF 223
>gi|390449488|ref|ZP_10235093.1| ribonuclease PH [Nitratireductor aquibiodomus RA22]
gi|389663985|gb|EIM75496.1| ribonuclease PH [Nitratireductor aquibiodomus RA22]
Length = 238
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P EMR + E G A+GS + G+T V+ V + S Q V
Sbjct: 1 MRPSKREPDEMRAVSFERGFSKHAEGSCLVRFGDTHVLCTASLEERVPPWLRN-SGQGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STGDRMR+ K R+ EI +I +++ + + + QI + V+
Sbjct: 60 TAEYGMLPRSTGDRMRREASSGKQGGRTLEIQRLIGRSLRSVVDLQALGEKQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D M +D V + S G N TP+LDL+Y
Sbjct: 120 QADGGTRTAAITGGFIALSDCLSWMEARQMVSRDKVLKDHVAAISCGIYNGTPVLDLDYA 179
Query: 173 EDSAGGPDV 181
EDSA D
Sbjct: 180 EDSAAETDA 188
>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
Length = 261
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 18/182 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQA 66
+R DGR P+++R +R I A+GSA+ EMGNT+V+ V + QQ +
Sbjct: 2 IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQ---RG 58
Query: 67 LVRCEYSMANFSTGDRMRKPKG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
V EY++ ST R R+ + R+ EI +I + + A + + + I VL
Sbjct: 59 WVTAEYALLPRSTAQRTRRERNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDVL 118
Query: 125 QADGGTRSACINAATLAL-----------QDAGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL + A P+R V + SAGY+ LLDL+Y E
Sbjct: 119 QADGGTRTASITGGYVALALALHRLTAAGRLAANPIRRAVAAVSAGYVGGNALLDLDYSE 178
Query: 174 DS 175
DS
Sbjct: 179 DS 180
>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
Length = 245
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 30/241 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR E+R + G +A+GSA+ E G+T+V+ PR ++ + +
Sbjct: 6 RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGK----- 60
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M +TG R K K R+ EIS +I +++ A I + + + I +
Sbjct: 61 GWVTAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDC 120
Query: 122 QVLQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL D + P++D V++ S G ++ TP+LD
Sbjct: 121 DVLQADGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLD 180
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
L Y ED D+ V ++ K +Q A+ N ++ LA+EG +A R
Sbjct: 181 LPYTEDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQR 239
Query: 226 E 226
E
Sbjct: 240 E 240
>gi|349574480|ref|ZP_08886428.1| tRNA nucleotidyltransferase [Neisseria shayeganii 871]
gi|348013949|gb|EGY52845.1| tRNA nucleotidyltransferase [Neisseria shayeganii 871]
Length = 241
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 17/225 (7%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR E+R + + ADGS + GNTK+I E + DQ V EY
Sbjct: 7 GRAADELRPVSITPDFLPHADGSVLIACGNTKIICTAT-VEESLPPFLRGKDQGWVTAEY 65
Query: 73 SMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADG
Sbjct: 66 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAAVDLQRLGERQILIDCDVIQADG 125
Query: 129 GTRSACINAA----TLALQ---DAGI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +LA+Q AG+ P+R+ V + SAG + PLLDL+Y EDS
Sbjct: 126 GTRTASITGAFVAMSLAVQKLLKAGMLLSNPIREQVAAVSAGVVGGVPLLDLDYPEDSGC 185
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
DV + ++ K+ +Q A+ + +++QL G K +A
Sbjct: 186 DSDVNL-VMTASGKIIEIQGTAEGAPFSHAELLQLLALGQKGIAE 229
>gi|395205396|ref|ZP_10396027.1| tRNA nucleotidyltransferase [Propionibacterium humerusii P08]
gi|422441184|ref|ZP_16517994.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
gi|422472632|ref|ZP_16549120.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
gi|422574559|ref|ZP_16650112.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium humerusii P08]
Length = 252
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 22/237 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 70
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G R+ K R+ EIS ++ +++ A I + + I + V
Sbjct: 71 VTAEYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDV 130
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P+ V + S G + P+LDL Y
Sbjct: 131 LQADGGTRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGGVPMLDLAYE 190
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNT--FEDVMQLAIEGCKAVANYIREV 227
EDS D+ V + + D V + P N +++ LA GC + EV
Sbjct: 191 EDSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEV 247
>gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010]
gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010]
Length = 239
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R GR+ E+RQ+ A+GS + E G+TKV+ + + S + V
Sbjct: 1 MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASVEERIP-PFLRGSGEGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG RM++ K R+ EI +I +++ A I + I I V+
Sbjct: 60 TAEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +ALQDA P+ V S S G N TP+LDL+Y E
Sbjct: 120 QADGGTRTASITGAFVALQDAINHLIKTKKLKKSPLFGQVASVSVGIYNGTPVLDLDYDE 179
Query: 174 DSAGGPDVTV 183
DS+ D+ V
Sbjct: 180 DSSAETDMNV 189
>gi|425733482|ref|ZP_18851802.1| ribonuclease PH [Brevibacterium casei S18]
gi|425481922|gb|EKU49079.1| ribonuclease PH [Brevibacterium casei S18]
Length = 241
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 30/242 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSDQ 65
R DGR E+R+++ + A+GSA+ E GNT+V+ A PR ++ + +
Sbjct: 3 RADGRGADELREVKITRNWITTAEGSALIEFGNTRVLCAASLTEGVPRWLKGQGR----- 57
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M +T R K K R+ EIS +I +++ A I + + + +
Sbjct: 58 GWVTAEYAMLPRATDSRSTRESVKGKLGGRTHEISRLIGRSLRAVIDMTKLGENTLVLDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-------GI------PMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +A+ DA G+ P+ D V + S G ++ PLLD
Sbjct: 118 DVLQADGGTRTASITGAYVAMADAIDKGRSSGLIPAAHQPLTDSVAAISVGIVDGQPLLD 177
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
L YVEDS D+ V ++ K +Q A+ + ++ LA +GC + R
Sbjct: 178 LPYVEDSTAETDMNV-VMTGSGKFVEVQGTAEGAPFDRDELSSLLDLAAKGCADLTELQR 236
Query: 226 EV 227
E
Sbjct: 237 EA 238
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 13/149 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R T++R + +G +++ADGSA F +G + V+ +VYGP + + +++ D A ++
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKL-DHAHIQ 76
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+S + +G + R + IRQ +EA +L+ L PR+ I I +QVL DG
Sbjct: 77 VVFSPVSGISGTQERTYEH---------FIRQVVEAIVLSALHPRTTIQITLQVLFDDGS 127
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSA 158
S INAA LAL DAGIP+ +CSA
Sbjct: 128 ILSTAINAAVLALIDAGIPLSK---TCSA 153
>gi|395836960|ref|XP_003791414.1| PREDICTED: exosome complex component MTR3 [Otolemur garnettii]
Length = 272
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 113/220 (51%), Gaps = 16/220 (7%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---AGYLNSTPLLDLNYVEDSAGGP 179
+L+ G +A + AA LAL DAGI M D+V C A T LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGIEMYDLVVGCGLSRAPGPAPTWLLDPTRLEEERAAA 209
Query: 180 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL PT ++ + ++L +EGC+
Sbjct: 210 SLTVALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQ 249
>gi|452911548|ref|ZP_21960215.1| Ribonuclease PH [Kocuria palustris PEL]
gi|452833185|gb|EME35999.1| Ribonuclease PH [Kocuria palustris PEL]
Length = 258
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 26/238 (10%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQ 60
S G R DGR E+R + G A+A+GSA+ E G T+V+ A+V PR ++ + +
Sbjct: 13 SASGPRADGRAVDELRPITITRGWSAQAEGSALIEFGQTRVLCTASVTEGVPRWLRGEGR 72
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQ 116
V EY+M +TG R ++ KG R+ EIS +I +++ + I + +
Sbjct: 73 -----GWVTAEYAMLPRATGTRSQRESVKGRIGGRTHEISRLIGRSLRSVIDLKALGENT 127
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTP 165
+ + VLQADGGTR+A I A +AL +A G P+ D V + S G ++ P
Sbjct: 128 VVLDCDVLQADGGTRTASITGAYVALSEAMGWARRQGLVTGDPLTDSVAAVSVGIIDGVP 187
Query: 166 LLDLNYVEDSAGGPDVTVGIL--PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
+LDL YVED D+ V + T +V A + + ++ LA+ GC +A
Sbjct: 188 MLDLPYVEDVRAETDMNVVVTGSGTFVEVQGTAEGAPFDRSELDGLLDLAVAGCADLA 245
>gi|374850303|dbj|BAL53295.1| ribonuclease PH [uncultured Aquificae bacterium]
Length = 253
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 120/250 (48%), Gaps = 29/250 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R DGR+P E+R +R + +GS + E GNTKVI V VQ+ + Q
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTV----SVQDGVPPFLKGKGQ 56
Query: 66 ALVRCEYSMANFSTGDR-MRKPKGDR---RSTEISLVIRQTMEACI-LTHLMPRSQIDIF 120
+ EYSM +T R +R+ R R+ EI +I + M + LT + R+ I
Sbjct: 57 GWITAEYSMLPRATITRNIRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERT-FWID 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA I P++D V S S G ++ LLDL
Sbjct: 116 CDVIQADGGTRTASITGAFVALADAVIKLYSEGILSSTPIKDFVASVSVGMVSGQMLLDL 175
Query: 170 NYVEDSAGGPDVTVGILPT--LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
NY EDS D+ V + + ++ L + F+ ++ LA+ G ++ I
Sbjct: 176 NYEEDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAG---ISQLIELQ 232
Query: 228 RKFLLIAVDI 237
R F + DI
Sbjct: 233 RAFYEVVGDI 242
>gi|335044420|ref|ZP_08537445.1| RNase PH [Methylophaga aminisulfidivorans MP]
gi|333787666|gb|EGL53550.1| RNase PH [Methylophaga aminisulfidivorans MP]
Length = 239
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR+ E+R + A+GS + E G+TKV+ V+ + Q + +
Sbjct: 1 MRPSGRQANELRHVNITRNYTKHAEGSVLVEFGDTKVLCTA----TVEERIPQFLRGTGE 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M STG RM++ K R+ EI +I +++ A I + I I
Sbjct: 57 GWVTAEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAIDLKSLGERSITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA P+ V S S G N TP+LDL+
Sbjct: 117 DVIQADGGTRTASITGAYVALHDAISHLLNTRKLKSSPLHGQVASISVGIYNGTPVLDLD 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREV 227
Y EDS+ D+ V ++ LQ A+ + ++ LA G + REV
Sbjct: 177 YDEDSSAETDMNV-VMNDAGAYIELQGTAEGHAFRAEELQSMLDLASHGISQLMEKQREV 235
>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
ATCC 33806]
gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
ATCC 33806]
Length = 242
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R +R G GS + E GNT+V+ + V + ++ S + +
Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVP-RFKKDSGEGWLT 64
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T +RM + K R+ EIS ++ +++ A I L+ + I+I VLQ
Sbjct: 65 AEYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQ 124
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+ + + S G ++ LDL Y ED
Sbjct: 125 ADGGTRTASITGAYIALADAIAHLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEED 184
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCK 218
S D+ V I+ K +Q A+ T + E++ + A +GCK
Sbjct: 185 SRADVDLNV-IMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCK 230
>gi|304310165|ref|YP_003809763.1| ribonuclease PH [gamma proteobacterium HdN1]
gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1]
Length = 238
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R GR+P E+R++ A+GS + E GNTKVI +A G PR ++ +
Sbjct: 1 MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTASATEGVPRFLKG-----TG 55
Query: 65 QALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ V EY M ST DRM + K R+ EI +I +++ A + L+ + I +
Sbjct: 56 RGWVTAEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I +AL DA G P++ ++ S S G P+LDL
Sbjct: 116 CDVIQADGGTRTASITGGCVALVDALSFLLKKGTIKQDPLQRLIASVSVGIYKGVPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ V
Sbjct: 176 DYPEDSKAETDMNV 189
>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Diplosphaera colitermitum TAV2]
gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Diplosphaera colitermitum TAV2]
Length = 254
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQALV 68
R DGRRP ++R + E A GS + GNT+VI AA P+ QQ +
Sbjct: 6 RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWL 65
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYS+ +ST DR + K K D R+ EI +I + + A + + + + I VL
Sbjct: 66 TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVL 125
Query: 125 QADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A LA L D G P D + + S G L LLDL Y E
Sbjct: 126 QADGGTRTASITGAYLATRLALQKLLDTGKLAENPFTDSIAAISVGILGGRELLDLPYTE 185
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFED---VMQLAIEGCKAVA 221
D D + ++ +Q + T T++ ++ LA +G K +A
Sbjct: 186 DKDAEVDANI-VMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKGLKEIA 235
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 4 VSPEGLRLDGRR---PTEMRQLRAEIGNVAKADGSAVFEMGN--TKVIAAVYGPREVQNK 58
+S EG + GRR P+E R + G +++A GSA E G+ TKV+ AV+GPRE
Sbjct: 22 LSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMG 81
Query: 59 SQQMSDQALVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ + + C+ A FS G + L +++++E + PR+++
Sbjct: 82 GERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEV 141
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVE 173
++V VL+ G A ++ A+LAL DAGI M D+ C L+ P LLD + E
Sbjct: 142 IVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCG---LSRGPGGELLLDPDDDE 198
Query: 174 DSAG-GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
+ AG G +++ +LPTL++V+ L + + E+ ++L +EGC+
Sbjct: 199 EEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQ 244
>gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 245
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR ++R++ E +A+GSA+ G T+V+ V + + S Q V
Sbjct: 7 RHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVP-RWKAGSGQGWVT 65
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T +RM K K R+ EIS +I +++ A + + + I I VLQ
Sbjct: 66 AEYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQ 125
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P++D V + S G ++ PLLDL YV
Sbjct: 126 ADGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYV 185
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 186 EDVRAETDMNV 196
>gi|388569529|ref|ZP_10155921.1| Ribonuclease PH [Hydrogenophaga sp. PBC]
gi|388263278|gb|EIK88876.1| Ribonuclease PH [Hydrogenophaga sp. PBC]
Length = 242
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 13 GRRPTE-MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCE 71
G+R T +R +R G A+GS + E GNTKV+ +V ++ S + V E
Sbjct: 8 GQRATNALRPVRITRGYTMHAEGSVLIEFGNTKVLCTASVEEKVP-PHKRGSGEGWVTAE 66
Query: 72 YSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
Y M A + DR K K R+ EI +I +++ A + I + VLQAD
Sbjct: 67 YGMLPRATHTRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLKALGERSISLDCDVLQAD 126
Query: 128 GGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
GGTR+A I A +A QDA P+RD V + S G L+ TPLLDL YVEDS
Sbjct: 127 GGTRTAAITGAFVAAQDAVSRLMAAGKLTASPIRDHVAAISVGILDGTPLLDLEYVEDST 186
Query: 177 GGPDVTV 183
D+ V
Sbjct: 187 CDTDMNV 193
>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
Length = 252
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQAL 67
R DGR+ +R++ + A A GS + G+TKVI + V ++Q +S L
Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EYSM +ST DR ++ K D R EI +I +++ A I +P + + V
Sbjct: 66 T-AEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDV 124
Query: 124 LQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A LA L DAG P RD + + S G P+LDL Y+
Sbjct: 125 LQADGGTRTASITGAYLAARLAVQKLIDAGTLKENPFRDSIAAVSVGIYEGEPVLDLPYI 184
Query: 173 EDSAGGPDVTV 183
ED D V
Sbjct: 185 EDRDASVDFNV 195
>gi|422537939|ref|ZP_16613821.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
Length = 254
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|336122959|ref|YP_004565007.1| ribonuclease PH [Vibrio anguillarum 775]
gi|335340682|gb|AEH31965.1| Ribonuclease PH [Vibrio anguillarum 775]
Length = 238
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R + R ++R ++ A A+GS + E GNTKV+ A V PR ++ + +
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + MP I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAYLVASGKLKKNPMKGHVAAVSVGILGENILCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E++M L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTENGKMIEIQGTAEGEPFSHEELMDLLAVAKKGIADIVEAQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|353241256|emb|CCA73082.1| hypothetical protein PIIN_07036 [Piriformospora indica DSM 11827]
Length = 267
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E ++ + R DGR ++R + G V++A+GSA E GNTK+ AVY PR+++N
Sbjct: 28 LEPLNSDNKRRDGRASEDLRPIFLTTGLVSQANGSAYIETGNTKIACAVYAPRQLKNT-- 85
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q SD + E A FS+ R R D I ++ Q++ I HL P+S ID+F
Sbjct: 86 QYSDIGRLNVEVKFAPFSSV-RRRAHLRDVEDRTIGQLVHQSLLPAIQLHLFPKSSIDVF 144
Query: 121 VQVLQADG--GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
+ V++ DG G ++ AA+ AL DAGI M +V +C A +D E A
Sbjct: 145 ITVIENDGLEGCVASASIAASTALADAGIEMDGMVVACCAALYKDRIWMDPVTSERLAAR 204
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTN-----------TFEDVMQLAIEGCK 218
+ + +P L +T + + T F+D+ + +E K
Sbjct: 205 GALLLAGIPALGTITNIWQSGNVTTKEALQCIEVCYAQFKDIHDVVVEAIK 255
>gi|381401321|ref|ZP_09926229.1| ribonuclease PH [Kingella kingae PYKK081]
gi|380833707|gb|EIC13567.1| ribonuclease PH [Kingella kingae PYKK081]
Length = 241
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 112/237 (47%), Gaps = 21/237 (8%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R E+R++R + ADGS + E GNTKVI V + +Q V EY
Sbjct: 7 RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVP-PFLRGKNQGWVTAEYG 65
Query: 74 MANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
M ST RM++ K R+ EI +I +++ AC+ + QI I V+QADGG
Sbjct: 66 MLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGG 125
Query: 130 TRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
TR+A I A +AL+ A P+ V + S G + PLLDL+Y EDS
Sbjct: 126 TRTASITGAFVALKIAVQKMLNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSGCD 185
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235
DV + ++ +K+ +Q + +++ QL G K IRE+ ++ AV
Sbjct: 186 SDVNL-VMLNAEKIIEIQGTVEGAAFGLDELQQLIALGQKG----IRELTEWQEKAV 237
>gi|365131232|ref|ZP_09341799.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363618898|gb|EHL70235.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 710
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV--YGPREVQNKSQQMSD 64
EG R+DGR E+R L AE+G + + GS +F G T+V+ AV G R+ +Q M D
Sbjct: 320 EGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTAVTLSGLRD----AQIMDD 375
Query: 65 QAL-----VRCEYSMANFSTGD-RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+L Y+ +S G+ R + G R +L R + P + I
Sbjct: 376 ISLEPTKRYMHHYNFPPYSVGEARAPRSPGRREIGHGALAERALLPVLPSVEEFPYA-IR 434
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVED 174
+VL ++G T A I +TLAL DAG+P++ V S G + +LD+ VED
Sbjct: 435 GVSEVLSSNGSTSQASICGSTLALMDAGVPIKKPVAGISCGLITEGDRWMTMLDIQGVED 494
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
G D VG T D +T +QMD K+ T+E +++ A E C+ YI
Sbjct: 495 FHGDMDFKVG--GTRDGITAIQMDMKVDGLTYE-IIEEAFEKCRKARLYI 541
>gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78]
gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78]
Length = 241
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 24/238 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+T+V+ V + ++ S + V
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M A + GDR + K R+ EIS +I +++ A + + + + + VLQ
Sbjct: 62 AEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA +P+RD V++ S G ++S P LDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYE 181
Query: 173 EDSAGGPDVTVGILPTLD----KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + T D +V A + ++ LA GC +A RE
Sbjct: 182 EDVRAETDMNV--VRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQRE 237
>gi|392595837|gb|EIW85160.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 259
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQQMSDQALVRCEY 72
R +++R + + G +++A+GSA E TK+ A+YGPR QNK S S+ + E
Sbjct: 39 RAASDIRPIFLQTGFISQANGSAYVETAKTKLACAIYGPR--QNKASAAYSEHGRLNVEV 96
Query: 73 SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--GT 130
A FS R + P D I+ I Q + + + L+P+S ID+F+ +L++DG G
Sbjct: 97 KFAPFSY-PRRKAPLRDAEDRTIAETIHQALASSVRLELLPKSTIDVFITILESDGIEGC 155
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLD 190
+ AA+ AL DAGI + +VT+CSA + LD E V++ LP LD
Sbjct: 156 TATASTAASAALADAGIEILGLVTACSAAIIGEEIWLDPTEAESKQATGSVSLAYLPALD 215
Query: 191 KVTLL----QMDAKLPTNTFE 207
+VT + QMD + E
Sbjct: 216 RVTTVFQSGQMDVSMAIRCME 236
>gi|422444804|ref|ZP_16521563.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
Length = 254
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS DV V + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
gi|166228301|sp|A6VEE1.1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
Length = 239
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|407936062|ref|YP_006851704.1| ribonuclease PH [Propionibacterium acnes C1]
gi|407904643|gb|AFU41473.1| ribonuclease PH [Propionibacterium acnes C1]
Length = 254
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|354607392|ref|ZP_09025361.1| ribonuclease PH [Propionibacterium sp. 5_U_42AFAA]
gi|353556411|gb|EHC25781.1| ribonuclease PH [Propionibacterium sp. 5_U_42AFAA]
Length = 252
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 70
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 71 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 130
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 131 LQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 190
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + + D V + P N +++ LA GC
Sbjct: 191 EDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 237
>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|384128268|ref|YP_005510881.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
Length = 253
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R DGR+P E+R +R + +GS + E GNTKVI V VQ+ + Q
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTV----SVQDGVPPFLKGKGQ 56
Query: 66 ALVRCEYSMANFSTGDR-MRKPKGDR---RSTEISLVIRQTMEACI-LTHLMPRSQIDIF 120
+ EYSM +T R +R+ R R+ EI +I + M + LT + R+ I
Sbjct: 57 GWITAEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERT-FWID 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +A+ DA I P++D V S S G +N LLDL
Sbjct: 116 CDVIQADGGTRTASITGAFVAIADAVIKLYNEGILSSTPIKDFVASVSVGTVNGQILLDL 175
Query: 170 NYVEDSAGGPDVTVGILPT--LDKVTLLQMDAKLPTNTFEDVMQLAIEG 216
NY EDS D+ V + + ++ L + F+ ++ LA+ G
Sbjct: 176 NYEEDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAG 224
>gi|365862676|ref|ZP_09402416.1| ribonuclease PH [Streptomyces sp. W007]
gi|364007931|gb|EHM28931.1| ribonuclease PH [Streptomyces sp. W007]
Length = 245
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 96/191 (50%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA + P+ D V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVVWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
gi|335052124|ref|ZP_08545019.1| tRNA nucleotidyltransferase [Propionibacterium sp. 409-HC1]
gi|342213305|ref|ZP_08706030.1| tRNA nucleotidyltransferase [Propionibacterium sp. CC003-HC2]
gi|386024615|ref|YP_005942920.1| ribonuclease PH [Propionibacterium acnes 266]
gi|417930078|ref|ZP_12573458.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK182]
gi|422385685|ref|ZP_16465814.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
gi|422388996|ref|ZP_16469096.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
gi|422392792|ref|ZP_16472850.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
gi|422425911|ref|ZP_16502841.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
gi|422429976|ref|ZP_16506863.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
gi|422439037|ref|ZP_16515872.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
gi|422448324|ref|ZP_16525051.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
gi|422460123|ref|ZP_16536767.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
gi|422473771|ref|ZP_16550243.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
gi|422478669|ref|ZP_16555086.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
gi|422478985|ref|ZP_16555398.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
gi|422482415|ref|ZP_16558809.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
gi|422484504|ref|ZP_16560882.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
gi|422486530|ref|ZP_16562875.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
gi|422490039|ref|ZP_16566362.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
gi|422494045|ref|ZP_16570342.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
gi|422496358|ref|ZP_16572642.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
gi|422497384|ref|ZP_16573659.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
gi|422503392|ref|ZP_16579630.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
gi|422505611|ref|ZP_16581840.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
gi|422507360|ref|ZP_16583562.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
gi|422512363|ref|ZP_16588493.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
gi|422516938|ref|ZP_16593043.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
gi|422517530|ref|ZP_16593621.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
gi|422522490|ref|ZP_16598516.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
gi|422525122|ref|ZP_16601127.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
gi|422529078|ref|ZP_16605051.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
gi|422530999|ref|ZP_16606952.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
gi|422533553|ref|ZP_16609487.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
gi|422544899|ref|ZP_16620733.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
gi|422553475|ref|ZP_16629261.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
gi|422553616|ref|ZP_16629393.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
gi|422560575|ref|ZP_16636263.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
gi|422567969|ref|ZP_16643593.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266]
gi|333764776|gb|EGL42161.1| tRNA nucleotidyltransferase [Propionibacterium sp. 409-HC1]
gi|340768849|gb|EGR91374.1| tRNA nucleotidyltransferase [Propionibacterium sp. CC003-HC2]
gi|340772765|gb|EGR95266.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK182]
gi|456738768|gb|EMF63335.1| ribonuclease PH [Propionibacterium acnes FZ1/2/0]
Length = 254
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
Length = 239
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
gi|355643650|ref|ZP_09053472.1| ribonuclease PH [Pseudomonas sp. 2_1_26]
gi|386061511|ref|YP_005978033.1| ribonuclease PH [Pseudomonas aeruginosa M18]
gi|386068990|ref|YP_005984294.1| ribonuclease PH [Pseudomonas aeruginosa NCGM2.S1]
gi|392987057|ref|YP_006485644.1| ribonuclease PH [Pseudomonas aeruginosa DK2]
gi|416854489|ref|ZP_11910924.1| ribonuclease PH [Pseudomonas aeruginosa 138244]
gi|418587317|ref|ZP_13151349.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P1]
gi|418591205|ref|ZP_13155105.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P2]
gi|419754038|ref|ZP_14280432.1| ribonuclease PH [Pseudomonas aeruginosa PADK2_CF510]
gi|420142486|ref|ZP_14650083.1| ribonuclease PH [Pseudomonas aeruginosa CIG1]
gi|421156872|ref|ZP_15616309.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 14886]
gi|421163879|ref|ZP_15622554.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 25324]
gi|421171287|ref|ZP_15629159.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 700888]
gi|421177596|ref|ZP_15635245.1| ribonuclease PH [Pseudomonas aeruginosa CI27]
gi|421183423|ref|ZP_15640883.1| ribonuclease PH [Pseudomonas aeruginosa E2]
gi|421519905|ref|ZP_15966576.1| ribonuclease PH [Pseudomonas aeruginosa PAO579]
gi|424943864|ref|ZP_18359627.1| ribonuclease PH [Pseudomonas aeruginosa NCMG1179]
gi|451987108|ref|ZP_21935269.1| Ribonuclease PH [Pseudomonas aeruginosa 18A]
gi|12230959|sp|P50597.2|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122256498|sp|Q02E28.1|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736925|sp|B7V5M5.1|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Pseudomonas Aeruginosa In Complex With Phosphate
gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
gi|334844053|gb|EGM22633.1| ribonuclease PH [Pseudomonas aeruginosa 138244]
gi|346060310|dbj|GAA20193.1| ribonuclease PH [Pseudomonas aeruginosa NCMG1179]
gi|347307817|gb|AEO77931.1| ribonuclease PH [Pseudomonas aeruginosa M18]
gi|348037549|dbj|BAK92909.1| ribonuclease PH [Pseudomonas aeruginosa NCGM2.S1]
gi|354829600|gb|EHF13664.1| ribonuclease PH [Pseudomonas sp. 2_1_26]
gi|375042070|gb|EHS34737.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P1]
gi|375049986|gb|EHS42473.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P2]
gi|384399529|gb|EIE45898.1| ribonuclease PH [Pseudomonas aeruginosa PADK2_CF510]
gi|392322562|gb|AFM67942.1| ribonuclease PH [Pseudomonas aeruginosa DK2]
gi|403244746|gb|EJY58605.1| ribonuclease PH [Pseudomonas aeruginosa CIG1]
gi|404345824|gb|EJZ72176.1| ribonuclease PH [Pseudomonas aeruginosa PAO579]
gi|404518512|gb|EKA29342.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 14886]
gi|404520607|gb|EKA31272.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 700888]
gi|404527152|gb|EKA37328.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 25324]
gi|404529285|gb|EKA39333.1| ribonuclease PH [Pseudomonas aeruginosa CI27]
gi|404540331|gb|EKA49744.1| ribonuclease PH [Pseudomonas aeruginosa E2]
gi|451755241|emb|CCQ87792.1| Ribonuclease PH [Pseudomonas aeruginosa 18A]
gi|453043174|gb|EME90907.1| ribonuclease PH [Pseudomonas aeruginosa PA21_ST175]
Length = 239
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 238
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD----------AGIP--MRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D A + ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA G D ++ + +Q A+ F D+M LA +G
Sbjct: 180 EDSAAGTDANF-VMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKG 225
>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
Length = 240
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR+DGR E+R +R G + A+GS + E G T+V+ A E K ++ + V
Sbjct: 2 LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAAS-VLEGVPKWRKGTGLGWV 60
Query: 69 RCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T R R+ R R+ EIS ++ +++ AC+ + + + + VL
Sbjct: 61 TGEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDAGIPMRD-----------IVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A LAL DA MRD V + S G ++ P+LDL Y E
Sbjct: 121 QADGGTRTAAITGAYLALADACRWMRDHGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYDE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
D G D+ V + D V + P + + +++LA GC
Sbjct: 181 DVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGC 226
>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
Length = 268
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 17/219 (7%)
Query: 29 VAKADGSAVFEMGNTKVIAAVYGPREV--QNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86
V++A GSA E+ TKV+ +V+ PRE+ QN+ +Q+ + CE A FS + R
Sbjct: 24 VSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ---LYCEVKFAPFSCPRKRRPY 80
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG 146
D +S+ +RQ +E + H P QID+ + +L+ DG +A INAA LAL +A
Sbjct: 81 VPDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGLALANAA 140
Query: 147 IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD-------VTVGILPTLDKVTLLQMDA 199
+PM DI+TSCS + +D +E+ +T+ +L L +++
Sbjct: 141 VPMFDIITSCSVAVIGHQMFIDPPEIEEHIAKNSTEVNPGIITMSVLSQLKQISDFTQIG 200
Query: 200 KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVDIV 238
+ VM++ ++ C+ + I+ V + VD+V
Sbjct: 201 SMDVECVTKVMEVLLKECEIIVPNIQRV-----LVVDVV 234
>gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
Length = 255
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 95/195 (48%), Gaps = 26/195 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR P ++R++R + A+GS + E G T+V+ A PR ++ +
Sbjct: 10 RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGT----- 64
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M ST R RK K R+ EIS +I +++ A I T + + I I
Sbjct: 65 GWVTSEYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDC 124
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA P+ D V + S G + P+LD
Sbjct: 125 DVLQADGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLD 184
Query: 169 LNYVEDSAGGPDVTV 183
L+Y EDS D+ V
Sbjct: 185 LDYPEDSTAETDMNV 199
>gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
Length = 279
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 20/188 (10%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
+P +R DGR P ++R +R G + A+GS + E GNT+V+ A V + ++ S
Sbjct: 10 APTTVRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFTAGVP-RWRKGSG 68
Query: 65 QALVRCEYSMANFSTGDR-----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ V EY+M +T R +R G R + EIS +I +++ A I + + I +
Sbjct: 69 EGWVTAEYAMLPRATNTRNDRESVRGRIGGR-THEISRLIGRSLRAVIDVAALGENTIVV 127
Query: 120 FVQVLQADGGTRSACINAATLALQDA---GIP----------MRDIVTSCSAGYLNSTPL 166
VLQADGGTR+A I A +AL DA G+ +RD V++ S G ++ PL
Sbjct: 128 DCDVLQADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPL 187
Query: 167 LDLNYVED 174
LDL Y ED
Sbjct: 188 LDLPYAED 195
>gi|365873117|ref|ZP_09412650.1| ribonuclease PH [Thermanaerovibrio velox DSM 12556]
gi|363983204|gb|EHM09411.1| ribonuclease PH [Thermanaerovibrio velox DSM 12556]
Length = 248
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQA 66
R+DGR ++R + + G A+GSA+ GNT V+ V+ K Q + Q
Sbjct: 3 RIDGRGCMDLRPVEIDRGCNRYAEGSALIRWGNTHVLCTA----SVEEKVPQFLRGTGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY+M ST R ++ + + R EI +I +++ A + + + I
Sbjct: 59 WVSAEYAMLPRSTHQRTQREISRGRPNARGQEIQRLIGRSLRASVDLEALGERTVWIDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
VLQADGGTR+A I A+ +AL DA G P+ V + SAG ++ LLDL Y
Sbjct: 119 VLQADGGTRTAAITASFVALVDACRWLLDRSVVKGFPVVHQVAAVSAGLVDGEVLLDLCY 178
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQM---DAKLPTNTFEDVMQLAIEGCK 218
EDSA D V ++ + LQ DA P TF+ ++ A EG +
Sbjct: 179 EEDSAAQVDCNV-VMAEDGRFVELQATGEDALFPRQTFDRMLSAAEEGIR 227
>gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069]
gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069]
Length = 238
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR ++R + A+GS + E G TKV+ A+V PR ++ K Q
Sbjct: 1 MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M ST RM + K R+ EI +I +++ A + + + I +
Sbjct: 57 -GWITAEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I+ A++AL DA G+ P++ +V S S G TP+LDL
Sbjct: 116 CDVLQADGGTRTASISGASIALHDALFHMRKTGMIKTNPLKHMVGSVSVGIYKGTPILDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
+Y+EDSA D+ + ++ +Q A+ T T +++MQ+
Sbjct: 176 DYLEDSAAETDMNL-VMDENGGFIEIQGTAEGETFTGDELMQM 217
>gi|407777221|ref|ZP_11124491.1| ribonuclease PH [Nitratireductor pacificus pht-3B]
gi|407300921|gb|EKF20043.1| ribonuclease PH [Nitratireductor pacificus pht-3B]
Length = 238
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P EMR + E G A+GS + G+T V+ V + S + V
Sbjct: 1 MRPSKREPDEMRAVSFERGISKHAEGSCLVRFGDTHVLCTASLEERVPPWLRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STGDRMR+ K R+ EI +I +++ A I + QI + V+
Sbjct: 60 TAEYGMLPRSTGDRMRREASSGKQGGRTLEIQRLIGRSLRAVIDLQALGERQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D M +D V + S G TP+LDL+YV
Sbjct: 120 QADGGTRTAAITGGFIALSDCLSWMEARQMISRDKVLKDHVAAISCGISGGTPVLDLDYV 179
Query: 173 EDSAGGPD 180
EDSA D
Sbjct: 180 EDSAAETD 187
>gi|392334379|ref|XP_003753157.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
gi|392355042|ref|XP_003751927.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
Length = 272
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 22/223 (9%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A FS G R R P+G E+ L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------LLDLNYVEDSA 176
+L+ G +A + AA LAL DAG+ M D+V C L+ TP LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCG---LSLTPGPSPTWLLDPTRLEEEH 206
Query: 177 GGPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL T ++ D ++L +EGC+
Sbjct: 207 SEAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQ 249
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 17/144 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP---REVQNKSQQMSDQA 66
R DGR + +R L E+G + ADGSA+++ G+T+V+AAV+GP R+ Q+++Q+
Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISI 62
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+++ S +T +R E I + + AC++T PRS I I +Q+L A
Sbjct: 63 IIK---SGTTVNTLER-----------EWEAFITKALTACLVTEQYPRSVIQIVLQILSA 108
Query: 127 DGGTRSACINAATLALQDAGIPMR 150
DG A +N A AL DAGI M+
Sbjct: 109 DGSVLGAALNGAVAALMDAGIAMK 132
>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
Length = 239
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 18/225 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R +R + A+GSA+ E G T+V+ A V + ++ + + V
Sbjct: 3 RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVP-RWRRGTGEGWVT 61
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T R K K R+ EIS +I +++ A + M I + VLQ
Sbjct: 62 AEYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA P+ V + S G + P LDLNY+ED
Sbjct: 122 ADGGTRTAAITGAYVALVDAVRYLRKQLDLKTNPLTGSVAAVSVGIVQGQPRLDLNYLED 181
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNT--FEDVMQLAIEGC 217
S D+ V + T + + + P + + ++ LA+ GC
Sbjct: 182 SVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGC 226
>gi|339007544|ref|ZP_08640118.1| ribonuclease PH [Brevibacillus laterosporus LMG 15441]
gi|338774747|gb|EGP34276.1| ribonuclease PH [Brevibacillus laterosporus LMG 15441]
Length = 245
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 18/244 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+RLDGR ++R ++ + A+GS + E+G+TKVI +V + + +
Sbjct: 1 MRLDGRSSDQLRPVKITRNYIKHAEGSCLIEVGDTKVICTATLEEKVP-PFMRNGGKGWI 59
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K R+ EI +I + + + + M I + V+
Sbjct: 60 TAEYSMLPRATETRNARESSRGKVGGRTMEIQRLIGRALRSVVKLEAMGERTIWLDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +A+ DA +P+ D + + S G + P+LDLNY E
Sbjct: 120 QADGGTRTASITGAFVAMVDAMNTLVTAGTWKELPITDFLAATSVGVVEGVPVLDLNYKE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 233
DS+ D+ V I+ K LQ + + E++MQL G K + + I E++K +L
Sbjct: 180 DSSAIVDMNV-IMTGAGKYVELQGTGEESPFSTEELMQLLALGQKGIQDLI-ELQKEVLG 237
Query: 234 AVDI 237
V +
Sbjct: 238 EVKL 241
>gi|422522845|ref|ZP_16598863.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
Length = 254
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGC 239
>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
Length = 245
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 30/241 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR E+R + G +A+GSA+ E G+T+V+ PR ++ + +
Sbjct: 6 RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGK----- 60
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M +TG R K K R+ EIS +I +++ A I + + + I +
Sbjct: 61 GWVTAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDC 120
Query: 122 QVLQADGGTRSACINAATLALQDA-------GI------PMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL D+ G+ P++D V++ S G ++ TP+LD
Sbjct: 121 DVLQADGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLD 180
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
L Y ED D+ V ++ K +Q A+ + ++ LA+EG +A R
Sbjct: 181 LPYTEDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQR 239
Query: 226 E 226
E
Sbjct: 240 E 240
>gi|357590755|ref|ZP_09129421.1| ribonuclease PH [Corynebacterium nuruki S6-4]
Length = 260
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR EMR +R G GS + E GNT+V+ V + ++ S + +
Sbjct: 12 RFDGRAVDEMRPVRITRGFTTNPAGSVLIEFGNTRVMCTASVSEGVP-RFKRDSGEGWLT 70
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T +RM K K R+ EIS ++ +++ A + + + ++I VLQ
Sbjct: 71 AEYAMLPSATAERMPRESLKGKVKGRTHEISRLVGRSLRAAVDLRGLGENTVNIDCDVLQ 130
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+ D V + S G ++ P LDL Y ED
Sbjct: 131 ADGGTRTASITGAYVALADALAVLQKRGVVPGRPLLDPVAAVSVGVIDGVPCLDLPYPED 190
Query: 175 SAGGPDVTVGILPTLDKVTLLQ---MDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
S D+ V ++ K +Q A+ + D++ LA G + + R
Sbjct: 191 SRADVDMNV-VMTAEGKFVEIQGTGEHAEFSRSELNDLLDLAEGGLHDLVDLQR 243
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR+ E+R ++ ++ + K DGSA F G++ V+AAVYGPR+V S++ D++ V
Sbjct: 5 RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVP-LSREKHDRSTVE 63
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ A P ++ + S + + A H PRS I + +Q L DGG
Sbjct: 64 VAWHSA----------PDNEQGAALQSHLTEFVVNALASIHDFPRSAIRVVIQELNNDGG 113
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
+ INA LAL DAGI + + + S ++ +LD +E + V G
Sbjct: 114 MLACAINATCLALMDAGISLTAMFAAASCAVVDGQLILDPTLIEQNKANAVVVTGACKQA 173
Query: 190 DKVT 193
KV
Sbjct: 174 SKVN 177
>gi|419419577|ref|ZP_13959810.1| ribonuclease PH [Propionibacterium acnes PRP-38]
gi|422395912|ref|ZP_16475945.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
gi|379979298|gb|EIA12618.1| ribonuclease PH [Propionibacterium acnes PRP-38]
Length = 280
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 42 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 98
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 99 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 158
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 159 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 218
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 219 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 265
>gi|392566799|gb|EIW59974.1| mRNA transport regulator 3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 5/212 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G GR ++R + + G + +A+GSA E TK+ AVYGPR Q+K+ +++
Sbjct: 35 GTPRKGRAARDIRPIYLKAGLINQANGSAYIETERTKIACAVYGPR--QSKTTVYNEKGR 92
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ E A FS R R P D +++ I+Q + + + L+P+S +DIFV V++ D
Sbjct: 93 LNVEVKFAPFSCTKR-RVPIRDAEDRSVAVQIQQALASAVRLELLPKSTLDIFVTVIEND 151
Query: 128 G--GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 185
G G +A AA++AL DAGI M +V SCSA + +D E V +
Sbjct: 152 GIEGCIAAGSVAASVALADAGIEMLGLVASCSAAVVGKEIWMDPTEEESKLASGSVVLAG 211
Query: 186 LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
LP L +T + + + M+ E C
Sbjct: 212 LPALGTITSVWQSGSMAPDEAIKCMEACQESC 243
>gi|110636340|ref|YP_676548.1| ribonuclease PH [Chelativorans sp. BNC1]
gi|122965408|sp|Q11B42.1|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1]
Length = 238
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+P EMR + E G A+GS + G+T V+ +V + S + V
Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI ++ +++ + I + QI + VL
Sbjct: 60 TAEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVL 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D M +D V + S G + TP+LDL+Y
Sbjct: 120 QADGGTRTAAITGGFVALHDCLSWMQARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA D ++ + +Q A+ F ++++LA +G
Sbjct: 180 EDSAAETDANF-VMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKG 225
>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
Length = 242
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 24/229 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R +R G GS + E GNT+V+ + V + ++ S + +
Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVP-RFKKDSGEGWLT 64
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T +RM + K R+ EIS ++ +++ A I L+ + I+I VLQ
Sbjct: 65 AEYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQ 124
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+ + + S G ++ LDL Y ED
Sbjct: 125 ADGGTRTASITGAYIALADAIAYLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEED 184
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF-----EDVMQLAIEGCK 218
S D+ V I+ K +Q A+ NTF ++ A +GCK
Sbjct: 185 SRADVDLNV-IMTQEGKFVEIQGTAE--HNTFSRDELNAMLDYAEKGCK 230
>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
Length = 239
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+Q DGGTR+A I AT++L DA G P++ IV + S G P+LDL+
Sbjct: 118 DVIQTDGGTRTASITGATVSLIDALAVLKKRVALKGNPLKQIVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAESDLNV 190
>gi|422467716|ref|ZP_16544268.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
gi|422469159|ref|ZP_16545689.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
Length = 254
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGRR ++R +R E G +++A+GS + G T V+ V + ++ S V
Sbjct: 16 RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVP-RWRKGSGLGWVT 74
Query: 70 CEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M N +G RK K R+ EIS ++ +++ A + + + I + VLQ
Sbjct: 75 AEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQ 134
Query: 126 ADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y ED
Sbjct: 135 ADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEED 194
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
S D+ V + D V + P N +++ LA GC
Sbjct: 195 SRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|49082078|gb|AAT50439.1| PA5334, partial [synthetic construct]
Length = 240
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+T+VI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20]
gi|385779372|ref|YP_005688537.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
gi|419722606|ref|ZP_14249746.1| ribonuclease PH [Clostridium thermocellum AD2]
gi|419725516|ref|ZP_14252557.1| ribonuclease PH [Clostridium thermocellum YS]
gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20]
gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
gi|380771086|gb|EIC04965.1| ribonuclease PH [Clostridium thermocellum YS]
gi|380781373|gb|EIC11031.1| ribonuclease PH [Clostridium thermocellum AD2]
Length = 263
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR+DGR +++R ++ + A+GS + EMG+TKVI +V ++ + + V
Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVP-PFKKNTGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K RS EI +I + + + + +L+ +I I V+
Sbjct: 61 TAEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL DA IP+ D + + S G ++ +LDL Y+E
Sbjct: 121 QADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIVDGVEMLDLCYME 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEG 216
DS D+ V + + + + +LP F+ ++ A +G
Sbjct: 181 DSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKG 225
>gi|387128871|ref|YP_006297476.1| ribonuclease PH [Methylophaga sp. JAM1]
gi|386275933|gb|AFI85831.1| Ribonuclease PH [Methylophaga sp. JAM1]
Length = 238
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R GR+P ++R++ A+GS + E G+TKV+ + + M + +
Sbjct: 1 MRPSGRQPDQLREITITRNYTKHAEGSVLVEFGDTKVLCTASVEERIPPFLRGMG-EGWI 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG RM++ K R+ EI +I +++ A I + I I V+
Sbjct: 60 TAEYGMLPRSTGSRMQRESSRGKQGGRTMEIQRLIGRSLRAAIDLKALGERTITIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +ALQDA P+ V S S G N T +LDL+Y E
Sbjct: 120 QADGGTRTASITGAFVALQDAITYLIKKRKIKKSPLHGQVASVSVGIHNGTAVLDLDYAE 179
Query: 174 DSAGGPDVTV 183
DS D+ V
Sbjct: 180 DSTAETDMNV 189
>gi|398830900|ref|ZP_10589081.1| ribonuclease PH [Phyllobacterium sp. YR531]
gi|398213480|gb|EJN00074.1| ribonuclease PH [Phyllobacterium sp. YR531]
Length = 238
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 17/188 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P EMR + E G A+GS + + G+T V+ +V + + + V
Sbjct: 1 MRHSKRAPDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-TGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STGDRMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGDRMRREASSGKQGGRTLEIQRLIARSLRAVVDLQALGEVQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL + M +D V + S G N TP++DL+Y+
Sbjct: 120 QADGGTRTAAITGGWVALHECLRWMETRQMLKVEKVLKDHVAAISCGISNGTPVIDLDYI 179
Query: 173 EDSAGGPD 180
EDS D
Sbjct: 180 EDSTAQTD 187
>gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
Length = 245
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR ++R++ E +A+GSA+ G T+V+ V + + S Q V
Sbjct: 7 RHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVP-RWKAGSGQGWVT 65
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T +RM K K R+ EIS +I +++ A + + + + I VLQ
Sbjct: 66 AEYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQ 125
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P++D V + S G ++ PLLDL YV
Sbjct: 126 ADGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYV 185
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 186 EDVRAETDMNV 196
>gi|452877074|ref|ZP_21954395.1| ribonuclease PH [Pseudomonas aeruginosa VRFPA01]
gi|452186145|gb|EME13163.1| ribonuclease PH [Pseudomonas aeruginosa VRFPA01]
Length = 252
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQALV 68
GR ++R +R A+GS + E G+TKVI V PR ++ + Q +
Sbjct: 19 GRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ-----GWL 73
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+R ++ K R+ EI +I +++ A + + + + I V+
Sbjct: 74 TAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVI 133
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+Y+E
Sbjct: 134 QADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 193
Query: 174 DSAGGPDVTV 183
DSA D+ V
Sbjct: 194 DSAAETDLNV 203
>gi|359782443|ref|ZP_09285664.1| ribonuclease PH [Pseudomonas psychrotolerans L19]
gi|359369710|gb|EHK70280.1| ribonuclease PH [Pseudomonas psychrotolerans L19]
Length = 240
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI A+V PR ++ K Q
Sbjct: 3 RPSGRAADQLRPIRITRQYTKHAEGSVLVEFGDTKVICTASVEAGVPRFLKGKGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R + K K R+ EI +I +++ A + + + I I
Sbjct: 58 GWLTAEYGMLPRATGERNQREAAKGKQGGRTLEIQRLIGRSLRAAVDLSKLGENTIYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A + A +AL DA G P++ +V + S G TP+LDL+
Sbjct: 118 DVIQADGGTRTASVTGACVALVDALGALKRRGNLKGNPLKQMVAAISVGIYQGTPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|340793697|ref|YP_004759160.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
gi|340533607|gb|AEK36087.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
Length = 256
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R +R G GS + E GNT+V+ V + ++ S + +
Sbjct: 8 RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVP-RFKRDSGEGWLT 66
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T +RM K K R+ EIS +I +++ A + + + ++I VLQ
Sbjct: 67 AEYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNIDCDVLQ 126
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+ D V + S G ++ P LDL Y ED
Sbjct: 127 ADGGTRTASITGAYVALADALAVLQQRGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPED 186
Query: 175 SAGGPDVTV 183
S D+ V
Sbjct: 187 SRADVDMNV 195
>gi|429210808|ref|ZP_19201974.1| ribonuclease PH [Pseudomonas sp. M1]
gi|428158222|gb|EKX04769.1| ribonuclease PH [Pseudomonas sp. M1]
Length = 239
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R + K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNAREASRGKQGGRTLEIQRLIGRSLRAALDLTKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|365539848|ref|ZP_09365023.1| ribonuclease PH [Vibrio ordalii ATCC 33509]
Length = 238
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R + R ++R ++ A A+GS + E GNTKV+ A V PR ++ + +
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + MP I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLVASGKLKKNPMKGHVAAVSVGILGENILCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E++M L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTENGKMIEIQGTAEGEPFSHEELMDLLAVAKKGIADIVEAQKA 234
Query: 230 FLL 232
L
Sbjct: 235 SLF 237
>gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
gi|125712937|gb|ABN51429.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
Length = 263
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR+DGR +++R ++ + A+GS + EMG+TKVI +V ++ + + V
Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVP-PFKKNTGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K RS EI +I + + + + +L+ +I I V+
Sbjct: 61 TAEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL DA IP+ D + + S G ++ +LDL Y+E
Sbjct: 121 QADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIVDGEEMLDLCYME 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEG 216
DS D+ V + + + + +LP F+ ++ A +G
Sbjct: 181 DSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKG 225
>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
Length = 256
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R +R G + GS + E GNT+V+ V + ++ S + +
Sbjct: 18 RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVP-RFKKDSGEGWLT 76
Query: 70 CEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M ST +RM K K R+ EIS ++ + + A + + + ++I VLQ
Sbjct: 77 AEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQ 136
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+R V + S G ++ P LDL Y ED
Sbjct: 137 ADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEED 196
Query: 175 SAGGPDVTVGI 185
S D+ V +
Sbjct: 197 SRADVDMNVAM 207
>gi|381400018|ref|ZP_09925030.1| Ribonuclease PH [Microbacterium laevaniformans OR221]
gi|380772636|gb|EIC06328.1| Ribonuclease PH [Microbacterium laevaniformans OR221]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 93/186 (50%), Gaps = 26/186 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R DGR P ++R + E G A A+GSA+ G TKV+ A+ G PR + K +
Sbjct: 7 RADGRTPDQLRPVTIERGWSAHAEGSALISFGGTKVLCTASFTGGVPRWLTGKGK----- 61
Query: 66 ALVRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M A S DR K K R+ EIS +I + + A + T + + I I
Sbjct: 62 GWVTAEYAMLPRATNSRNDREAVKGKIGGRTHEISRLIGRALRAVVDTKALGENTIVIDC 121
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA + D V + S G ++ P+LD
Sbjct: 122 DVLQADGGTRTAAITGAYIALADAIEWGRAKGFVGKNAKVLLDSVAAVSVGIIDGEPMLD 181
Query: 169 LNYVED 174
L YVED
Sbjct: 182 LAYVED 187
>gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
Length = 237
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R GR+ EMR + E G A+GSA+ +MG+T V+ ++++ + S
Sbjct: 1 MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTAT----IEDRVPPFIKGSGL 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M +T RMR+ K R+ EI +I + + A + + QI +
Sbjct: 57 GWVTAEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR A I +AL+ A P+ D V + S G PLLDL+
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAVNKLMKAGDVVSDPLVDPVAAVSCGIYAGQPLLDLD 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y EDS G D I+ K+ +QM A+ T T + + QL
Sbjct: 177 YPEDSEAGVDGNF-IMTGSGKLIEIQMSAEGSTYTRDQMNQL 217
>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
Length = 254
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
gi|365963328|ref|YP_004944894.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965571|ref|YP_004947136.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974507|ref|YP_004956066.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn33]
gi|422427613|ref|ZP_16504525.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
gi|422433712|ref|ZP_16510576.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
gi|422436240|ref|ZP_16513092.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
gi|422444101|ref|ZP_16520898.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
gi|422449907|ref|ZP_16526626.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
gi|422454140|ref|ZP_16530821.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
gi|422500794|ref|ZP_16577049.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
gi|422512035|ref|ZP_16588172.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
gi|422540388|ref|ZP_16616256.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
gi|422541709|ref|ZP_16617566.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
gi|422548242|ref|ZP_16624057.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
gi|422550342|ref|ZP_16626141.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
gi|422558784|ref|ZP_16634521.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
gi|422561728|ref|ZP_16637408.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
gi|422571488|ref|ZP_16647071.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
gi|422579829|ref|ZP_16655348.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
gi|365740009|gb|AEW84211.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742252|gb|AEW81946.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744506|gb|AEW79703.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn33]
Length = 254
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ D V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|411004957|ref|ZP_11381286.1| ribonuclease PH [Streptomyces globisporus C-1027]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ D V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
gi|387504042|ref|YP_005945271.1| ribonuclease PH [Propionibacterium acnes 6609]
gi|422456706|ref|ZP_16533369.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
gi|422574922|ref|ZP_16650466.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
gi|335278087|gb|AEH29992.1| ribonuclease PH [Propionibacterium acnes 6609]
Length = 254
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|337265332|ref|YP_004609387.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
gi|336025642|gb|AEH85293.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
Length = 238
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD------------AGIPMRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMTSVSKVLKDHVAAISCGIHDGQPVIDLDYI 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDS+ G D ++ + +Q A+ F D+M LA +G
Sbjct: 180 EDSSAGTDANF-VMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKG 225
>gi|386069877|ref|YP_005984773.1| ribonuclease PH [Propionibacterium acnes ATCC 11828]
gi|353454244|gb|AER04763.1| ribonuclease PH [Propionibacterium acnes ATCC 11828]
Length = 252
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 70
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 71 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 130
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 131 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 190
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 191 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 237
>gi|433456683|ref|ZP_20414717.1| ribonuclease PH [Arthrobacter crystallopoietes BAB-32]
gi|432195898|gb|ELK52395.1| ribonuclease PH [Arthrobacter crystallopoietes BAB-32]
Length = 261
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQ 60
+P +R DGR P ++R + G +A+GSA+ E GNT+V+ A+V PR ++ + +
Sbjct: 10 APAIVRADGRSPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASVTAGVPRWLKGEGR 69
Query: 61 QMSDQALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
V EY+M +T R K K R+ EIS +I +++ + I + +
Sbjct: 70 -----GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDLKALGENT 124
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNS 163
I + VLQADGGTR+A I A +AL DA P+ D V + S G ++
Sbjct: 125 IVLDCDVLQADGGTRTAAITGAYVALADALRWAKDNKLVARSASPLTDTVAAVSVGIIDG 184
Query: 164 TPLLDLNYVED 174
P+LDL YVED
Sbjct: 185 APMLDLPYVED 195
>gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
Length = 238
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 91/190 (47%), Gaps = 22/190 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R R P EMR + E G A+GS + + GNT V+ A +++K +
Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAA----SLEDKPPPWLRGQGR 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EYSM +T R R+ K R+ EI +I +++ A M QI I
Sbjct: 57 GWVTAEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A LAL+D P+RD V + S G N TP++DL+
Sbjct: 117 DVIQADGGTRTASITGAWLALRDCFEWMRSRSIIKDNPLRDHVAAVSCGIFNGTPVIDLD 176
Query: 171 YVEDSAGGPD 180
Y EDS D
Sbjct: 177 YAEDSTAETD 186
>gi|422458458|ref|ZP_16535111.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
Length = 254
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
gi|226736942|sp|B1VVV6.1|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ D V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|61215895|sp|Q6A759.2|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 244
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 62
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 123 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 182
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 183 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 229
>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces griseus XylebKG-1]
gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces griseus XylebKG-1]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ D V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|350571024|ref|ZP_08939363.1| tRNA nucleotidyltransferase [Neisseria wadsworthii 9715]
gi|349793587|gb|EGZ47418.1| tRNA nucleotidyltransferase [Neisseria wadsworthii 9715]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 107/216 (49%), Gaps = 17/216 (7%)
Query: 31 KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP---- 86
ADGS + E GNTKVI E + DQ V EY M ST RMR+
Sbjct: 27 HADGSCLIEFGNTKVICTA-SIDESLPPFLRGQDQGWVTAEYGMLPASTATRMRREAAAG 85
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQ--- 143
K R+ EI +I +++ A + + QI I V+QADGGTR+A I A +ALQ
Sbjct: 86 KQSGRTQEIQRLIGRSLRAVVELEKLGERQILIDCDVIQADGGTRTASITGAFVALQLAV 145
Query: 144 ----DAGI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLL 195
D+G+ P+R+ V + S G + PLLDL+Y EDS DV + ++ K+ +
Sbjct: 146 NKLLDSGMLIQNPIREAVAAVSVGVVGGVPLLDLDYPEDSGCDSDVNI-VMTASGKIIEI 204
Query: 196 QMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
Q A+ + E++ +L G K +A I +K L
Sbjct: 205 QGTAEGAPFSLEELNRLIALGQKGIAELIAHQQKAL 240
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R L + +A GSA + G TKV+AAVYGP+ K + ++A +
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPK-AGTKKNENPEKASIE 63
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ G + DR E +++++T+E+ + + P + + VQV+ DG
Sbjct: 64 VIWKPNTGHVG------QADR---EYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDGA 114
Query: 130 TRSACINAATLALQDAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDV 181
INAA AL DAGIP+R + V C + N++ +LD + E+ P+
Sbjct: 115 LLPCAINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPNT 174
Query: 182 TVGILP 187
TV ++P
Sbjct: 175 TVSVVP 180
>gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10]
gi|254808583|sp|B8I1A8.1|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10]
Length = 240
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + V
Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I I V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I + +AL DA +P+ V + S G +N LLDL Y+E
Sbjct: 121 QADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEELLDLCYIE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF 206
DS +V + ++ T DK +++ A ++F
Sbjct: 181 DS--NAEVDMNVIKT-DKGEFIEIQATGEKSSF 210
>gi|333977855|ref|YP_004515800.1| Ribonuclease PH [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821336|gb|AEG13999.1| Ribonuclease PH [Desulfotomaculum kuznetsovii DSM 6115]
Length = 261
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 26/238 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS---QQMSDQA 66
R+DGR+P +MR ++ A+GS + E+G+T+VI V+++ +Q +
Sbjct: 3 RVDGRKPGQMRPVKITRHFNKYAEGSVLVEVGDTRVICTAT----VEDRVPPFRQDTGMG 58
Query: 67 LVRCEYSMANFSTGDRMRK--PKGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQV 123
V EY M +TG R + +G R+ EI +I +++ + + L+ L R+ I + V
Sbjct: 59 WVTAEYGMLPRATGVRTSRDLTRGKGRTQEIQRLIGRSLRSVVDLSALGERTVI-LDCDV 117
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
+QADGGTR+A I A +AL DA +P++D V + S G +N +LDL +
Sbjct: 118 IQADGGTRTASITGAFVALVDALAHLVGEGSLPYLPVKDFVAATSVGRVNGELVLDLCFA 177
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCKAVANYIREV 227
EDSA D+ V ++ ++ +Q + + T E++ + LA EG + + +Y +EV
Sbjct: 178 EDSAAEVDMNV-VMTGEGRLVEVQGTGEEASFTREELNRMLDLAAEGIRLLVDYQKEV 234
>gi|357028703|ref|ZP_09090733.1| ribonuclease PH [Mesorhizobium amorphae CCNWGS0123]
gi|355537970|gb|EHH07220.1| ribonuclease PH [Mesorhizobium amorphae CCNWGS0123]
Length = 238
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPAWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STGDRMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGDRMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD----------AGIP--MRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D A + ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDS+ G D ++ + +Q A+ + F +M LA +G
Sbjct: 180 EDSSAGTDANF-VMTGKGGIVEIQGTAEGEPFSEDQFAALMGLAKKG 225
>gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9]
gi|254808590|sp|C1DCK5.1|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9]
Length = 238
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 20/239 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R +E+R +R A+GS + E G+TKVI V + Q V
Sbjct: 1 MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKG-QGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I+ A +AL DA G+ P+RD V + S G ++ P+LDL+Y E
Sbjct: 120 QADGGTRTASISGAWVALADAIDGLMAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYTE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFED---VMQLAIEGCKAVANYIREVRK 229
DS D+ V ++ +Q A+ + ED ++ LA EG +A+ + R+
Sbjct: 180 DSGCDTDMNV-VMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQAARQ 237
>gi|30248295|ref|NP_840365.1| ribonuclease PH [Nitrosomonas europaea ATCC 19718]
gi|61216039|sp|Q82XJ4.1|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718]
Length = 241
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R + R P +MR +R V A+GS + E G T+VI +V + + Q +
Sbjct: 3 RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKV-PPFLKGAGQGWLT 61
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STG+RM+ K K R+ EI +I + + + + + I + V+Q
Sbjct: 62 AEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA P+RD V + S G L PLLDL+Y+ED
Sbjct: 122 ADGGTRTASITGAFVALYDAIDYLRAERMISQNPIRDHVAAVSVGILKGQPLLDLDYLED 181
Query: 175 SAGGPDVTV 183
S D+ V
Sbjct: 182 SGCDTDLNV 190
>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
Length = 256
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R +R G + GS + E GNT+V+ V + ++ S + +
Sbjct: 18 RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVP-RFKKDSGEGWLT 76
Query: 70 CEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M ST +RM K K R+ EIS ++ + + A + + + ++I VLQ
Sbjct: 77 AEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQ 136
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+R V + S G ++ P LDL Y ED
Sbjct: 137 ADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEED 196
Query: 175 SAGGPDVTVGI 185
S D+ V +
Sbjct: 197 SRADVDMNVAM 207
>gi|386289192|ref|ZP_10066329.1| ribonuclease PH [gamma proteobacterium BDW918]
gi|385277813|gb|EIF41788.1| ribonuclease PH [gamma proteobacterium BDW918]
Length = 238
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQALVRC 70
R E RQ+ A+GS + EMGNTKVI VQN + S Q V
Sbjct: 7 RASDEKRQVTITRNYTCHAEGSVLIEMGNTKVICTA----SVQNSVPGFLRGSGQGWVTA 62
Query: 71 EYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
EY M STG RM + K R+ EI +I +++ A I ++ + I + V+QA
Sbjct: 63 EYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRASIDLTMLGENTIYLDCDVIQA 122
Query: 127 DGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
DGGTR+A + A +AL DA G P++ V + S G P+LDL+Y EDS
Sbjct: 123 DGGTRTASVTGAYVALADAIASLQKKGLVTGNPLQQQVAAISVGVYKGVPVLDLDYAEDS 182
Query: 176 AGGPDVTV 183
D+ V
Sbjct: 183 NAETDMNV 190
>gi|422391477|ref|ZP_16471568.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
gi|422464371|ref|ZP_16540982.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
gi|422564098|ref|ZP_16639763.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
Length = 244
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 62
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 123 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 182
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 183 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 229
>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 238
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR ++R + A A+GS + E GNTKVI A+V PR ++ K Q
Sbjct: 1 MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + ++ I +
Sbjct: 57 -GWVTAEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P++ +V + S G N P+ DL
Sbjct: 116 CDVIQADGGTRTASITGAMVALVDAINYMLEKGMIKKNPLKGMVAAVSVGIYNGEPICDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y+EDSA D+ V ++ K+ +Q A+ + E+++ +
Sbjct: 176 EYLEDSAAETDMNV-VMTEEGKMIEIQGTAEGEAFSHEELLAM 217
>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
gi|226736948|sp|B5YFY8.1|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 236
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 23/235 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+ E+R ++ E + ADGS + E+GNT+VI ++NK + DQ
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTA----SIENKVPPFLKDQKK 56
Query: 66 ALVRCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM R+ R R+ EI +I +T+ A + + I I
Sbjct: 57 GWITAEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDC 116
Query: 122 QVLQADGGTRSACINAATLAL-------QDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
V++ADGGTR+A I +AL +AG+ P++D + + S G + P LDL
Sbjct: 117 DVIEADGGTRTASITGGYIALVEAVKKAMNAGMITENPIKDSIAAISVGIVLGEPRLDLC 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
Y EDS D+ + ++ K +Q A++ + E+++QL K + IR
Sbjct: 177 YAEDSQAEVDMNI-VMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIR 230
>gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
gi|254808593|sp|B8IFR7.1|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
Length = 237
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 93/193 (48%), Gaps = 28/193 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R R P E+R++ E G A+GS + G T+V+ GP ++ S
Sbjct: 1 MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRG-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + EY+M +T +R R KP G R+ EI +I +++ A + + QI
Sbjct: 56 KGWITAEYAMLPRATHERNRREVNAGKPSG--RTQEIQRLIGRSLRAVVNLPAIGERQIV 113
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLL 167
I VLQADGGTR+A I A +AL + PMRD V + S G TP+L
Sbjct: 114 IDCDVLQADGGTRTASITGAWVALHECFTWMRSRSIISVDPMRDHVAAVSCGIHKGTPIL 173
Query: 168 DLNYVEDSAGGPD 180
DL+Y EDSA D
Sbjct: 174 DLDYAEDSAAETD 186
>gi|158819077|ref|NP_001103659.1| exosome complex component MTR3 [Bos taurus]
gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
Length = 272
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+ + EG R P +R + A G +++A GSA E G TKV+ AV GPR + +
Sbjct: 20 YAAGEGEEPAPRDPARLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRPAEGGERGG 79
Query: 63 SD-----------QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL 111
+ + C++ A FS G R R P G E++L +++ +E +
Sbjct: 80 GPAGAGGEAPAALRGRLLCDFRRAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGR 138
Query: 112 MPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------ 165
PR+Q+++ +L+ G +A + AA LAL DAG+ M D+V C L+ P
Sbjct: 139 YPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCG---LSRAPAPAPAW 195
Query: 166 LLDLNYVEDSAGGPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
LLD +E+ +TV ++P L++V +L PT ++ + ++L +EGC+
Sbjct: 196 LLDPTLLEEERASAGLTVALMPVLNQVAGVLGSGEGGPTESWAEAVRLGLEGCQ 249
>gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
Length = 262
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P E+R ++ G + A+GS + E G T+V+ A V + ++ S + V
Sbjct: 20 RADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFTEGVP-RWKKGSGEGWVT 78
Query: 70 CEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T R + KG R+ EIS +I +++ A I + + I + VLQ
Sbjct: 79 AEYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQ 138
Query: 126 ADGGTRSACINAATLALQDAGIPMR-------------DIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA R D V++ S G ++ P+LDL YV
Sbjct: 139 ADGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYV 198
Query: 173 EDSAGGPDVTV 183
ED G D+ V
Sbjct: 199 EDVRAGTDMNV 209
>gi|357386380|ref|YP_004901104.1| ribonuclease PH [Pelagibacterium halotolerans B2]
gi|351595017|gb|AEQ53354.1| ribonuclease PH [Pelagibacterium halotolerans B2]
Length = 239
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQA 66
+R GR +MR + E G +A+GS + G T+V+ A+V + Q +
Sbjct: 1 MRPSGRASDQMRDVTIERGIAPQAEGSCLVSFGRTRVLCTASVETSLPPWRRGQGL---G 57
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY M +TG R R+ K R+ EI +I +++ A I + +Q+ +
Sbjct: 58 WVTAEYGMLPRATGSRTRREATAGKQSGRTQEIQRLIGRSLRAVIDMAALGENQVILDCD 117
Query: 123 VLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
VL+ADGGTR+A I A +AL +A G P+RD V + S G TP+LDL+Y
Sbjct: 118 VLEADGGTRTASITGAFVALSEAIFWMKERSLLKGDPIRDHVAAVSCGVYRGTPVLDLDY 177
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
+EDS D +L K +Q A+ + E++ +L
Sbjct: 178 LEDSEAETDANF-VLTGSGKFVEIQGTAEAEPFSSEELAEL 217
>gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
Length = 242
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R +R ++ + DGS + E GNTKVI V + +Q V EY
Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVP-PFLRGKNQGWVTAEYG 67
Query: 74 MANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADGG
Sbjct: 68 MLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127
Query: 130 TRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
TR+A I A +AL A GI P+R+ V + SAG + PLLDL+Y EDS
Sbjct: 128 TRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISAGIVGGVPLLDLDYPEDSGCD 187
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
DV + ++ K+ +Q A+ + E++ +L K + +R
Sbjct: 188 SDVNI-VMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLR 233
>gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
gi|21759410|sp|Q98DN6.1|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
Length = 238
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD----------AGIP--MRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D A + ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA G D ++ + +Q A+ + F ++M LA +G
Sbjct: 180 EDSAAGTDANF-VMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKG 225
>gi|410447693|ref|ZP_11301785.1| tRNA adenylyltransferase [SAR86 cluster bacterium SAR86E]
gi|409979273|gb|EKO36035.1| tRNA adenylyltransferase [SAR86 cluster bacterium SAR86E]
Length = 234
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV----YGPREVQNKSQQMSDQ 65
R + R+ EMR + E+G A+GSA+ + G+T VI + PR ++ S++
Sbjct: 3 RKNNRKTNEMRSIEIELGVNKHAEGSALIKFGDTHVICTASIENHVPRWMRG-----SNE 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST +RM + K R+ EI +I +++ + + I+I
Sbjct: 58 GWITAEYGMLPRSTHERMNREAARGKQSGRTMEIQRLIGRSLRQAVNLKYLKDKTINIDC 117
Query: 122 QVLQADGGTRSACINAATLAL-------QDAGIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
V+QADGGTR+A I+ A +AL D +++ V + S G + TP LDL+Y ED
Sbjct: 118 DVIQADGGTRTASISGACVALFEAIKNSHDDQRAIKEYVAAVSIGLKDGTPFLDLDYDED 177
Query: 175 SAGGPDVTV 183
S D+ V
Sbjct: 178 SDADTDLNV 186
>gi|397905698|ref|ZP_10506540.1| Ribonuclease PH [Caloramator australicus RC3]
gi|397161217|emb|CCJ33875.1| Ribonuclease PH [Caloramator australicus RC3]
Length = 259
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R+DGR E+R ++ + A+GS + E G+TKVI + +K Q + Q
Sbjct: 1 MRVDGRDNLELRPIKVTRNYIKHAEGSVLVEFGDTKVICTA----SIDDKVPQFLKGTGQ 56
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIF 120
+ CEY M ST +R K K D R+ EI +I + + + + LT + R+ I I
Sbjct: 57 GWITCEYGMLPRSTVERKPREAAKGKIDGRTAEIQRLIGRALRSVVDLTKIGERT-IWID 115
Query: 121 VQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL D A P+R+ V + S G + LLDL
Sbjct: 116 CDVIQADGGTRTASITGAFIALVDAINKLDEVEKLAVYPIRNYVAAVSVGIFDGEVLLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y EDS D+ V + D V + + P N E M L
Sbjct: 176 CYEEDSKAKVDMNVVMTDKGDFVEIQGTGEESPFNRKELNMML 218
>gi|407804019|ref|ZP_11150848.1| ribonuclease PH [Alcanivorax sp. W11-5]
gi|407021956|gb|EKE33714.1| ribonuclease PH [Alcanivorax sp. W11-5]
Length = 238
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR P ++R +R A+GS + E GNTKV+ A+V PR ++ + +
Sbjct: 1 MRPSGRAPDQLRDIRITRQYTMHAEGSVLVEFGNTKVLCTASVEDGVPRFMKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R ++ K R+ EI +I +++ A + T + + I I
Sbjct: 57 -GWVTAEYGMLPRATNTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDTKKLGENTILID 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I A +AL DA P+ +V S S G TP+LDL
Sbjct: 116 CDVLQADGGTRTASITGACVALVDALTYLLNARKIKEDPLVGLVASVSVGLYKGTPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+YVEDS+ D+ V
Sbjct: 176 DYVEDSSADTDMNV 189
>gi|357406955|ref|YP_004918879.1| ribonuclease PH [Methylomicrobium alcaliphilum 20Z]
gi|351719620|emb|CCE25296.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[Methylomicrobium alcaliphilum 20Z]
Length = 239
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR P ++R+++ G A+GS + E G+T+VI A+V PR ++ K +
Sbjct: 1 MRPSGRNPEQLREIKFTCGYTKHAEGSVLVEFGDTRVICTASVETNVPRFLKGKGE---- 56
Query: 65 QALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M ST DRM + K R+ EI +I +++ A + + + I I
Sbjct: 57 -GWITAEYGMLPRSTHDRMGREASRGKQGGRTQEIQRLIGRSLRAAVDMKALGENTITID 115
Query: 121 VQVLQADGGTRSACINAATLAL-----------QDAGIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I +AL Q P+ V S S G P+LDL
Sbjct: 116 CDVLQADGGTRTASITGGFVALSLAVQKMLAKKQIKKNPLHGQVASVSVGIFKGVPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ V
Sbjct: 176 DYAEDSNAETDMNV 189
>gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594]
gi|122544511|sp|Q2NAJ7.1|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594]
Length = 237
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR P EMR + E G A+GS + G+TKV+ A+V P ++ K Q
Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQ---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM A + G+R + K R+ EI +I +++ A + + QI +
Sbjct: 57 -GWVTGEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A +AL+ A G+ P+ + + S G N TP+LDL
Sbjct: 116 CDVIQADGGTRTASISGAWIALRLAVSGLMEQGQIKDDPITGKIAAISCGIYNGTPVLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
+Y EDS D +L K+ Q A+ T E +M+L
Sbjct: 176 DYAEDSNADADANF-VLIEGGKIAEAQATAEGATYDEEGLMRL 217
>gi|333898499|ref|YP_004472372.1| ribonuclease PH [Pseudomonas fulva 12-X]
gi|333113764|gb|AEF20278.1| Ribonuclease PH [Pseudomonas fulva 12-X]
Length = 240
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTVSVEQGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M +TGDR + K K R+ EI +I +++ A + + + + +
Sbjct: 58 GWVTAEYGMLPRATGDRNQREASKGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVMKKRGGLKGGDPLKQMIAAVSVGIYQGEPVLDL 177
Query: 170 NYVEDSAGGPDVTV 183
+Y+EDSA D+ V
Sbjct: 178 DYLEDSAAETDLNV 191
>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
Length = 240
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 28/242 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R DGR E+R++ + A+GSA+ E GNT+V+ A PR ++ + +
Sbjct: 1 MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGR---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ A I + + + +
Sbjct: 57 -GWVTAEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI------PMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA GI P++D + + S G ++ P+L
Sbjct: 116 CDVLQADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVL 175
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVANYIR 225
DL YVEDS D+ V + + V + P + E ++ LA +GC +
Sbjct: 176 DLPYVEDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGIQS 235
Query: 226 EV 227
EV
Sbjct: 236 EV 237
>gi|406989352|gb|EKE09143.1| hypothetical protein ACD_16C00212G0024 [uncultured bacterium]
Length = 238
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 28/240 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV----QNKSQQMSD 64
+R GRRP E+R + E+G A+GS + + G+T V+ +V +NK
Sbjct: 1 MRNSGRRPDELRPISFEVGFAKHAEGSCLTKFGDTHVLCTASLEEKVPPFLRNKGM---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M ST R+ + K R+ EI +I + + + + ++ QI I
Sbjct: 57 -GWITAEYGMLPRSTHLRVDREAARGKQSGRTQEIQRLIGRALRSVVDLSVLGERQITID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I+ A +AL A +P+ V + S G + P+LDL
Sbjct: 116 CDVLQADGGTRTAAISGAYVALYRALQTLVEKEKIEKLPLSHQVAAVSCGIVEGVPMLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
+Y+EDS+ D +L + +Q A+ +D+M LA G K + RE
Sbjct: 176 DYIEDSSAQADANF-VLTNDGGIIEVQTTAEGAPFEEKALQDMMTLARLGIKEITALQRE 234
>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
Length = 244
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R DGR E+R + G +A+GSA+ E G T+V+ PR ++ + +
Sbjct: 1 MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGR---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ + I + + + +
Sbjct: 57 -GWVTAEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLD 115
Query: 121 VQVLQADGGTRSACINAATLAL-------QDAGI------PMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL D G+ P+ D V + S G ++ P+L
Sbjct: 116 CDVLQADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPML 175
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGCKAVANYIR 225
DL YVED D+ V + + D V + P + + ++ LA+ GC +A R
Sbjct: 176 DLPYVEDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQR 235
Query: 226 E 226
E
Sbjct: 236 E 236
>gi|375109585|ref|ZP_09755831.1| ribonuclease PH [Alishewanella jeotgali KCTC 22429]
gi|397169308|ref|ZP_10492742.1| ribonuclease PH [Alishewanella aestuarii B11]
gi|374570381|gb|EHR41518.1| ribonuclease PH [Alishewanella jeotgali KCTC 22429]
gi|396089065|gb|EJI86641.1| ribonuclease PH [Alishewanella aestuarii B11]
Length = 239
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 25/242 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR +++R L A A+GS + E GNTKVI A+V PR ++ K Q
Sbjct: 1 MRPSGRTASQIRPLAFTRQFTAHAEGSVLVEFGNTKVICTASVTEGVPRFLKGKGQ---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M A S DR + K R+ EI +I + + + L+ + I I
Sbjct: 57 -GWITAEYGMLPRATHSRNDREAARGKQGGRTMEIQRLIGRALRTAVDLSLLGENTITID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P+R +V + S G T + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNFMLAKGLIKKNPLRYMVAAVSVGIYQGTAVADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+Y EDSA D+ + ++ +V +Q A+ +F + Q+ G A+ + E ++
Sbjct: 176 DYAEDSAAETDMNL-VMTEQGEVIEIQGTAEEAPFSFAQMQQMLELGAAAITEIVAEQKR 234
Query: 230 FL 231
L
Sbjct: 235 VL 236
>gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
Length = 248
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 25/242 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R+DGR+ ++R ++ A+GS + E G+TKVI A++ P ++ K +
Sbjct: 1 MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGE---- 56
Query: 65 QALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ CEY+M +T R + K K D R+ EI +I + + + + M I +
Sbjct: 57 -GWITCEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A +AL DA P+RD V++ S G +N+ +LDL
Sbjct: 116 CDVIQADGGTRTASISGAFVALVDAVNKLHKRTPFTVYPIRDFVSAISVGIVNNVRMLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
Y+EDS D+ + + + + V + + P T +D+ +L G K + N I ++
Sbjct: 176 CYLEDSRAQVDMNIVMTDSGEFVEIQGTGEQSPF-TRDDLQELLRLGEKGINNMIHAQKE 234
Query: 230 FL 231
L
Sbjct: 235 SL 236
>gi|374295625|ref|YP_005045816.1| ribonuclease PH [Clostridium clariflavum DSM 19732]
gi|359825119|gb|AEV67892.1| ribonuclease PH [Clostridium clariflavum DSM 19732]
Length = 260
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R+DGR + +R+++ + A+GS + EMG+TKVI +V + ++ + + V
Sbjct: 1 MRIDGRENSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPS-FKKNTGEGWV 59
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM STG R + K K + RS EI +I + + + + +++ I I V+
Sbjct: 60 TAEYSMLPRSTGVRNPRDISKLKLNGRSQEIQRLIGRALRSVVNFNILGERVIIIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL DA IP+ D+V + S G + +LDL Y E
Sbjct: 120 QADGGTRTASITGGFVALVDACKKLVDDGIIEKIPITDMVAAVSVGIVGDEEMLDLCYEE 179
Query: 174 DSAGGPDVTV 183
DS D+ V
Sbjct: 180 DSNAIVDMNV 189
>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
Length = 241
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 122/243 (50%), Gaps = 26/243 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R P +R ++ + G +GS + E G+T+V+ V + ++ S V
Sbjct: 3 RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVP-RWRRGSGSGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR K K R+ EIS +I + + +C+ + + I I VLQ
Sbjct: 62 AEYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGIPMRD---------IVT----SCSAGYLNSTPLLDLNYV 172
ADGGTR+A I + +ALQDA + D I+T + S G + TP+LDLNYV
Sbjct: 122 ADGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDLNYV 181
Query: 173 EDSAGGPDVTVGILPTLD----KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR 228
EDS+ DV + ++ T D +V +A +T + ++ LA +GCK + +VR
Sbjct: 182 EDSSA--DVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGA--QVR 237
Query: 229 KFL 231
L
Sbjct: 238 ALL 240
>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
Length = 240
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR ++R +R G + A GS + E G T+V+ A V + ++ S V
Sbjct: 4 REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGVP-RWRKGSGLGWVT 62
Query: 70 CEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M +T DR + KG R+ EIS ++ +++ A I + + I I VLQ
Sbjct: 63 AEYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQ 122
Query: 126 ADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL D AG P+ + V + S G ++ P+LDL YVED
Sbjct: 123 ADGGTRTAAITGAYIALADAVAHLKGLGATAGEPLVESVAAISVGIVDGVPMLDLPYVED 182
Query: 175 SAGGPDVTV 183
D+ V
Sbjct: 183 VRAHTDMNV 191
>gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Photobacterium angustum S14]
gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14]
Length = 238
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR T++R + A A+GS + E GNTKVI A+V PR ++ K Q
Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + +++ I +
Sbjct: 57 -GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P++ +V + S G P+ DL
Sbjct: 116 CDVIQADGGTRTASITGAMVALVDAINYMLEKGMIKKSPLKGMVAAVSVGIYKGEPICDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y+EDSA D+ V ++ K+ +Q A+ + E+++ +
Sbjct: 176 EYLEDSAAETDMNV-VMTEEGKMIEIQGTAEGEAFSHEELLAM 217
>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
Length = 245
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 22/236 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR K + R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
ED D+ V + + +Q A+ + ++ LA+ GC +A + R
Sbjct: 182 EDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAHQR 236
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 14/228 (6%)
Query: 10 RLDGRRPTEM--RQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
RLDG R ++ R L E+G + ++ GSA E G TKV+A+V+GPREV K S
Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGS 96
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+ EY A F++ R G+ + ++ L + QT+ + + HL P+S+ID+ + VL+ D
Sbjct: 97 LNVEYKEAPFASRSDGR---GEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDD 153
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCS----AGYLNSTPLLDLNYVEDSAGGPD--- 180
G I AA LAL DA I + D+V S G S P ++ +
Sbjct: 154 GSAIPTAITAAALALSDASINLFDLVIGASVKLCGGKALSYPCKAEEGIQAHGSNAEENQ 213
Query: 181 --VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ +G P+L+++ L D L ++ M+ I+ +A ++E
Sbjct: 214 GHIIIGYQPSLEQIAALLQDGVLESSALSSQMRSLIKAAEATLPSVQE 261
>gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
Length = 252
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 30/198 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI------AAVYGPREVQNKSQQM 62
+R DGR P ++R + G +A+GSA+ E GNT+V+ A V PR ++ + +
Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGV--PRWLKGEGR-- 66
Query: 63 SDQALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
V EY+M +T R K K R+ EIS +I +++ + I T + + I
Sbjct: 67 ---GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIV 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTP 165
+ VLQADGGTR+A I A +AL DA P+ D + + S G ++ P
Sbjct: 124 LDCDVLQADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVP 183
Query: 166 LLDLNYVEDSAGGPDVTV 183
+LDL YVED D+ V
Sbjct: 184 MLDLPYVEDVRAETDMNV 201
>gi|421353041|ref|ZP_15803379.1| ribonuclease PH [Vibrio cholerae HE-45]
gi|395955500|gb|EJH66096.1| ribonuclease PH [Vibrio cholerae HE-45]
Length = 238
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + D
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQ-----D 55
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 56 KGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
Length = 239
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 17/191 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK--VIAAVYGPREVQNKSQQMSDQA 66
+R DGR+P E+R +R + A GS + G+T V A++ + + +
Sbjct: 1 MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKG 60
Query: 67 LVRCEYSMANFSTGDRMRKP--KGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQV 123
+ EY M ST R R+ K D RSTEI +I +++ AC+ L PR+ I I V+V
Sbjct: 61 WLTAEYCMLPGSTSPRKRREREKVDGRSTEIQRLIGRSLRACVDFETLGPRT-IMIDVEV 119
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVT-----------SCSAGYLNSTPLLDLNYV 172
LQADGGTR+ I +AL DA + D V+ + S G + TP+LDL+Y+
Sbjct: 120 LQADGGTRTLGITGGYIALCDAIATLGDKVSKDRPVLTTSIAAVSVGISHGTPILDLDYI 179
Query: 173 EDSAGGPDVTV 183
EDS D+ V
Sbjct: 180 EDSQAEVDLNV 190
>gi|335053906|ref|ZP_08546732.1| tRNA nucleotidyltransferase [Propionibacterium sp. 434-HC2]
gi|333765943|gb|EGL43268.1| tRNA nucleotidyltransferase [Propionibacterium sp. 434-HC2]
Length = 458
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 239
>gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
Length = 239
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R GR ++R++ A+GS + G+TKVI + V + + + Q +
Sbjct: 3 RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASVEKNVPH-FLRGTGQGWIT 61
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STGDRM + K R+ EI +I +++ A + ++ +QI I V+Q
Sbjct: 62 AEYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P++ ++ + S G T +LDL+Y ED
Sbjct: 122 ADGGTRTASITGACVALVDAITAMREQGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAED 181
Query: 175 SAGGPDVTV 183
S D+ V
Sbjct: 182 SNAETDMNV 190
>gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
Length = 245
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 15/188 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R+DGR+P E+R EI +A GSA+ + G TKV+ A +E K + + Q +
Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAA-SIQEGVPKFLEGTGQGWL 64
Query: 69 RCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM ST R R+ R R+ EI +I +++ A + + I + VL
Sbjct: 65 TAEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVL 124
Query: 125 QADGGTRSACIN----AATLALQDAGIP--MRDIVT---SCSAGYLNSTPLLDLNYVEDS 175
QADGGTR+A I A LAL+ P RD+V+ + S G +N TP+LDLNY EDS
Sbjct: 125 QADGGTRTASITGGYVATVLALRKI-FPDTYRDLVSPVAAVSVGIVNGTPMLDLNYAEDS 183
Query: 176 AGGPDVTV 183
D+ V
Sbjct: 184 TADTDLNV 191
>gi|24375740|ref|NP_719783.1| ribonuclease PH Rph [Shewanella oneidensis MR-1]
gi|61216058|sp|Q8E9L4.1|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|24350681|gb|AAN57227.1| ribonuclease PH Rph [Shewanella oneidensis MR-1]
Length = 237
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 29/238 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I + + AC+ + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G N + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
YVEDSA D+ V ++ K+ +Q A+ T E++++L N IRE+
Sbjct: 176 EYVEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFTHEELIEL----LGLAKNSIREI 228
>gi|415727339|ref|ZP_11471437.1| ribonuclease PH [Gardnerella vaginalis 00703Dmash]
gi|388062236|gb|EIK84854.1| ribonuclease PH [Gardnerella vaginalis 00703Dmash]
Length = 253
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 28/206 (13%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA----VYGPREVQ 56
+E V P +R+DGR E+R +R +GS + E GNT+V+ V PR +
Sbjct: 8 LESVKP--IRVDGREVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRR 65
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLM 112
+ S V EYSM +T +R + K R+ EIS +I + + + M
Sbjct: 66 D-----SGLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAM 120
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAG 159
QI I VLQADGGTR+A + A +AL D A ++D V++ S G
Sbjct: 121 GECQIQIDCDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVLKDAVSAVSVG 180
Query: 160 YLNSTPLLDLNYVEDSAGGPDVTVGI 185
+N TP+LDL YVEDS D+ V +
Sbjct: 181 VINGTPMLDLPYVEDSQAMTDMNVAM 206
>gi|395236506|ref|ZP_10414695.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|423350611|ref|ZP_17328264.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|394488394|emb|CCI82783.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|404387376|gb|EJZ82496.1| ribonuclease PH [Turicella otitidis ATCC 51513]
Length = 247
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 24/229 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR +E+R +R G GS + E GNTKV+ A +E + ++ S + +
Sbjct: 8 RADGRATSELRPVRLTRGFTTNPAGSVLAEFGNTKVLCAAS-IQEGVPRFKRDSGEGWLT 66
Query: 70 CEYSMANFSTGDR-----MR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EY+M ST +R MR K KG R+ EIS ++ +++ A + + + I + V
Sbjct: 67 AEYAMLPASTHERSPRESMRGKVKG--RTHEISRLVGRSLRAAVDLSELGENTIQLDCDV 124
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P+++ V + S G ++ LDL Y
Sbjct: 125 LQADGGTRTAAITGAYVALADAIAELQSRGVVPGTPLKEPVAAVSVGIIDGVACLDLPYE 184
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQ---MDAKLPTNTFEDVMQLAIEGCK 218
EDS D+ V ++ + +Q D +++ LA GC+
Sbjct: 185 EDSRAEVDMNV-VMTASGRFVEIQGTGEDGTFDRGQLGELLDLAAGGCR 232
>gi|310286881|ref|YP_003938139.1| rph ribonuclease PH [Bifidobacterium bifidum S17]
gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
Length = 243
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 3 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPS--VPRWRKDSGLGW 60
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + + + +QI I V
Sbjct: 61 VTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDV 120
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A I A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 121 LQADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLP 180
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + D + + P N E ++ LA +G K
Sbjct: 181 YIEDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNK 230
>gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
17244]
gi|169257896|gb|EDS71862.1| tRNA nucleotidyltransferase [Anaerofustis stercorihominis DSM
17244]
Length = 241
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 24/242 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R D R+ E R+++ DG + E GNTKVI + + ++N+
Sbjct: 2 VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAF----IENRVPPFLRGEGT 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ CEYSM ST R ++ K D RS+EI +I +++ + + ++ I I
Sbjct: 58 GWITCEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR A I A +AL DA +P+ + + S G + + PLLDL
Sbjct: 118 DVIQADGGTRVASITGAFVALYDALSKMVEKGEIERLPLTSFLAAISVGIVENEPLLDLC 177
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVANYIREVR 228
Y+EDS D+ V + + + L K P E ++ LA +G K + +EV
Sbjct: 178 YIEDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQKEVL 237
Query: 229 KF 230
F
Sbjct: 238 GF 239
>gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
gi|390936246|ref|YP_006393805.1| ribonuclease PH [Bifidobacterium bifidum BGN4]
gi|421733570|ref|ZP_16172672.1| ribonuclease PH [Bifidobacterium bifidum LMG 13195]
gi|421735729|ref|ZP_16174625.1| ribonuclease PH [Bifidobacterium bifidum IPLA 20015]
gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
gi|389889859|gb|AFL03926.1| ribonuclease PH [Bifidobacterium bifidum BGN4]
gi|407078462|gb|EKE51266.1| ribonuclease PH [Bifidobacterium bifidum LMG 13195]
gi|407296981|gb|EKF16467.1| ribonuclease PH [Bifidobacterium bifidum IPLA 20015]
Length = 254
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 14 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPS--VPRWRKDSGLGW 71
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + + + +QI I V
Sbjct: 72 VTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDV 131
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A I A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 132 LQADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLP 191
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + D + + P N E ++ LA +G K
Sbjct: 192 YIEDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNK 241
>gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
Length = 240
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R GR+P E+R++ A+GS + E G TKV+ A+V PR ++ S Q
Sbjct: 3 RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASVSEGVPRFLRG-----SGQ 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A + + I +
Sbjct: 58 GWITAEYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G+ P+ +V S S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGACVALVDALNGLQRDKALKTDPLNQLVASVSVGVYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV------GIL--------PTLDKVTLLQM 197
Y EDS+ D+ V G++ T D+ TL QM
Sbjct: 178 YPEDSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQM 218
>gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
Length = 240
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 19/213 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + +
Sbjct: 2 LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWI 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I + V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL DA P+ IV + S G +N LLDL Y+E
Sbjct: 121 QADGGTRTASITGGYVALADACRTLVKNGLISKTPIIGIVAATSVGIVNGEELLDLCYIE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF 206
DS D+ V DK +++ A ++F
Sbjct: 181 DSNAEVDMNV---IMTDKGEFIELQATGEKSSF 210
>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex component MTR3 [Callithrix jacchus]
Length = 271
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 16/220 (7%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P+G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPQGGGEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---AGYLNSTPLLDLNYVEDSAGGP 179
+L+ G +A + AA LAL DAG+ M D+V C A ST LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPASTWLLDPTRLEEERAAA 209
Query: 180 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL T ++ + ++L +EGC+
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQ 249
>gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 248
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQA 66
R+DGR ++R +R E G A+GSA+ GNT V+ V+ K Q S +
Sbjct: 3 RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTA----SVEEKVPQFLRGSGRG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY+M ST R ++ K + R EI +I +++ A + L+ I I
Sbjct: 59 WVSAEYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
VLQADGGTR+A I A+ +AL DA +P+ V + SAG + +LDL Y
Sbjct: 119 VLQADGGTRTAAITASFVALVDACRWLMSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCY 178
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQ---MDAKLPTNTFEDVMQLAIEGCK 218
EDS+ D V ++ + +Q DA +F D++ LA G +
Sbjct: 179 EEDSSAQVDCNV-VMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIR 227
>gi|350567792|ref|ZP_08936198.1| tRNA nucleotidyltransferase [Propionibacterium avidum ATCC 25577]
gi|348662044|gb|EGY78713.1| tRNA nucleotidyltransferase [Propionibacterium avidum ATCC 25577]
Length = 244
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G + +A+GS + G T V+ A+V E + ++ S
Sbjct: 6 RIDGRRLDQLRDVRIERGWLTQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 62
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKIGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G + TP+LDL Y
Sbjct: 123 LQADGGTRTASITGAYVALVDAVNWLRERGGLVWEPITGSVQAISVGVVGGTPMLDLAYE 182
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNT--FEDVMQLAIEGCKAV 220
EDS D+ V + V + P N +++ LA GC ++
Sbjct: 183 EDSRADTDMNVVMSGDGGFVEIQGTAEGAPFNRGLLNELLDLAAGGCASL 232
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R D R E+R++ + G V++A GSA EMG+TKV+ +V+ PRE+ NK+ Q +
Sbjct: 37 RSDKRTNNEIRKIFLKTGVVSQAKGSAYIEMGDTKVVCSVFDPREIPNKNGYCV-QGEIY 95
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
CE+ A+FS R + + + + SL++++ +E + H P Q+D++ VL G
Sbjct: 96 CEFKFASFSCQKR-KIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAGS 154
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175
+A I AA+ AL AG+PM +VT+ + G L+D E++
Sbjct: 155 ALAAAITAASTALASAGVPMFGLVTASTIGIYGDCFLMDPTDTEET 200
>gi|345877321|ref|ZP_08829072.1| hypothetical protein Rifp1Sym_as00060 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225632|gb|EGV51984.1| hypothetical protein Rifp1Sym_as00060 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 256
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR GR+P ++R +R A+GS + E G+TKVI V + + V
Sbjct: 18 LRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQG-RGWV 76
Query: 69 RCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RM + K R+ EI +I +++ A I + I + V+
Sbjct: 77 TAEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVI 136
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL DA PM V S S G TP+LDL+Y E
Sbjct: 137 QADGGTRTASITGAWIALHDAVQHILQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYAE 196
Query: 174 DSAGGPDVTV 183
DS+ D+ V
Sbjct: 197 DSSAETDMNV 206
>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
Length = 250
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
LR DGR ++R + G ++A+GSA+ E GNT+V+ + G PR ++ + +
Sbjct: 10 LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGEGR---- 65
Query: 65 QALVRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M A + DR K K R+ EIS +I +++ + I T + + I +
Sbjct: 66 -GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLD 124
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL ++ P+ D V + SAG +++ P+L
Sbjct: 125 CDVLQADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPML 184
Query: 168 DLNYVEDSAGGPDVTV 183
DL YVED D+ V
Sbjct: 185 DLAYVEDVRAETDMNV 200
>gi|378823551|ref|ZP_09846173.1| tRNA nucleotidyltransferase [Sutterella parvirubra YIT 11816]
gi|378597634|gb|EHY30900.1| tRNA nucleotidyltransferase [Sutterella parvirubra YIT 11816]
Length = 245
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 20/191 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R DGRR E+R + + G A+GS + MG+TKV+ A+V + Q +
Sbjct: 9 RADGRRTDEIRPVTFQRGFTKYAEGSVLIAMGDTKVLCTASVTPGVPAFLRGQ---GEGW 65
Query: 68 VRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY + STG R + K R+ EI +I +++ A + + I I V
Sbjct: 66 VTAEYGLLPRSTGTRCDREAARGKQSGRTQEIQRLIGRSLRAAVDRKRLGEWTIQIDCDV 125
Query: 124 LQADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR A I A +AL+DA G+ P+ V++ S G ++ P+LDLNYV
Sbjct: 126 LQADGGTRCASITGAWVALRDAVDGMLEKGQIESDPIIAQVSAVSVGVVDGHPVLDLNYV 185
Query: 173 EDSAGGPDVTV 183
EDSA G D+ V
Sbjct: 186 EDSACGTDMNV 196
>gi|400977184|ref|ZP_10804415.1| ribonuclease PH [Salinibacterium sp. PAMC 21357]
Length = 252
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR E+R++ E G +A+GSA+ G TKV+ PR + K +
Sbjct: 3 RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGK----- 57
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EYSM ST RM K K R+ EIS +I +++ A + + + I I
Sbjct: 58 GWVTAEYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA + D + + S G ++ P+LD
Sbjct: 118 DVLQADGGTRTAAITGAYIALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLD 177
Query: 169 LNYVEDSAGGPDVTV 183
L YVED D+ V
Sbjct: 178 LAYVEDVRAETDMNV 192
>gi|225677984|gb|EEH16268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 256
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 46/236 (19%)
Query: 40 MGNTKVIAAVYGPREVQNK--SQQMSDQALVRCEYSMANFSTGDRMRKP----------- 86
MGNT VI V+GP E + + + A++ ++A FS DR +K
Sbjct: 1 MGNTIVICMVHGPAEGRRSEATGPAREGAIISVAVNIAGFSGVDRKKKSLAAGAGGGGGG 60
Query: 87 -KGDRR-STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD 144
GDR+ ST++++ +R + + THL P S I + + VL +DG +ACINA TLAL D
Sbjct: 61 GGGDRQASTDLAIALRDAFQPHLHTHLYPHSTISLNISVLSSDGSLFAACINACTLALVD 120
Query: 145 AGIPMRDIVTSCSAGY-----------------LNST--PLLDLNYVEDS-------AGG 178
AGIPM ++ +C+ G +N + PLLD++ E+ A
Sbjct: 121 AGIPMPGLLCACTVGMSGRASTPATPEMKRVGGINESLDPLLDMSMPEEQELPFMTVANS 180
Query: 179 PDVTVGILPTLDK-----VTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
G P D+ ++++QM++ + + E + + +GCK V + V K
Sbjct: 181 NPAPPGHDPMDDEEDNQMLSVVQMESGVHISYLETMFAVGFDGCKQVREILNGVLK 236
>gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
gi|226736913|sp|B4U8T3.1|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
Length = 255
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 20/231 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R + R+ E+R +R + A+GS + E GNT+VI V + +Q +
Sbjct: 1 MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIAESVP-PFLKGKNQGWI 59
Query: 69 RCEYSMANFSTGDR-MRKP---KGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQV 123
EYSM +T R MR+ K R+ EI +I + M A I LT + R+ I I V
Sbjct: 60 TAEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERT-IWIDCDV 118
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
+QADGGTR+A I A +A+ DA +P+RD V + S G +N +LDL++
Sbjct: 119 IQADGGTRTASIVGAFIAMTDAIIKLNEQKLINSVPIRDTVGAVSVGIVNDRLMLDLDFE 178
Query: 173 EDSAGGPDVTVGILPTLDKVTL--LQMDAKLPTNTFEDVMQLAIEGCKAVA 221
EDS D+T+ + V + L +A FE ++ L +E K +A
Sbjct: 179 EDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIA 229
>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
gi|81875189|sp|Q8BTW3.1|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
Length = 273
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 23/224 (10%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDR-RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ + C++ A FS G R R P+G E+ L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSA 149
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------LLDLNYVEDS 175
+L+ G +A + AA LAL DAG+ M D+V C L+ TP LLD +E+
Sbjct: 150 LLLEDGGCALAAALTAAALALADAGVEMYDLVVGCG---LSLTPGPSPTWLLDPTRLEEE 206
Query: 176 AGGPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL T ++ D ++L +EGC+
Sbjct: 207 HSAAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQ 250
>gi|345871350|ref|ZP_08823296.1| Ribonuclease PH [Thiorhodococcus drewsii AZ1]
gi|343920513|gb|EGV31244.1| Ribonuclease PH [Thiorhodococcus drewsii AZ1]
Length = 240
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R RRP ++RQLR G A+GS + E G+T+V+ A++ P ++ + +
Sbjct: 1 MRPSQRRPDQLRQLRFTRGFTRHAEGSVLVEFGDTRVLCTASIEARVPPFLKGRGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M +TG+RM + K R+ EI +I + + A + + I +
Sbjct: 57 -GWITAEYGMLPRATGERMHREAARGKQGGRTLEIQRLIGRALRAAVDLSALGERTITLD 115
Query: 121 VQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I A +AL+D A P++ + + S G TP+LDL
Sbjct: 116 CDVLQADGGTRTASITGAWVALRDAIDQLRAKGELAADPIQAQIAAVSVGIFEGTPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS+ D+ +
Sbjct: 176 DYAEDSSAETDMNL 189
>gi|339064220|ref|ZP_08649303.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
Length = 238
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R GR P ++R+++ A+GS + E G+TKVI P ++ K
Sbjct: 1 MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGV---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M STG RM + K R+ EI +I +++ A I + + I I
Sbjct: 57 -GWVTAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA P++ + + S G N TP+LDL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDAVNSLRSKGAIKADPIKHRIAAVSVGIYNGTPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ +
Sbjct: 176 DYAEDSNAETDLNL 189
>gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34]
gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34]
Length = 238
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 25/242 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR T++R + A A+GS + E GNTKVI A+V PR ++ K Q
Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + ++ I +
Sbjct: 57 -GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P++ +V + S G P DL
Sbjct: 116 CDVIQADGGTRTASITGAMVALVDAINYMLENGMIKKSPLKSMVAAVSVGIYKGEPTCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
Y+EDSA D+ V ++ K+ +Q A+ + E+++ + +++ I +K
Sbjct: 176 EYLEDSAAETDMNV-VMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKK 234
Query: 230 FL 231
L
Sbjct: 235 AL 236
>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
Length = 257
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 116/245 (47%), Gaps = 31/245 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R DGR+P ++R ++ A+GS + E GNTKVI V++K + + Q
Sbjct: 1 MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTA----SVEDKVPPFLKGTGQ 56
Query: 66 ALVRCEYSMANFSTGDRMRK------PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ EYSM ++ R + P G R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYSMIPRASETRSLREVVRGSPSG--RTHEIQRLIGRSLRAAVDLKKLGEKTIWI 114
Query: 120 FVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR A I A +A+ DA I P++D V + S G + + +LD
Sbjct: 115 DCDVIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISIGKVRNEIVLD 174
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF--EDVMQLAIEGCKAVANYIRE 226
LNY EDS D+ L K +++ A NTF ED ++ G + I+
Sbjct: 175 LNYAEDSNAQVDMN---LVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKI 231
Query: 227 VRKFL 231
++F+
Sbjct: 232 QKEFI 236
>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
Length = 245
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+P +R L + G A+GS + EMGNTKV+ V+ K + DQ
Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTA----SVEEKVPPFLKDQGK 57
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M ST +R K K R+ EI +I +++ + + T M I I
Sbjct: 58 GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 117
Query: 122 QVLQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR+A I+ +A L G+ P+R+ + + S G + P+LDL
Sbjct: 118 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLC 177
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ +
Sbjct: 178 YTEDSGAETDMNL 190
>gi|393245504|gb|EJD53014.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 255
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 5/191 (2%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR P ++R + + G + +A+GSA E K+ AVYGPR+ +N + SD+ + E
Sbjct: 34 GRAPRDIRPIYLQTGLITQANGSAYIETERAKIACAVYGPRQPKNAA--YSDKGKLNVEV 91
Query: 73 SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG--GT 130
A F+ R R P D I+ +++Q + + L+P+S +DIFV +L+ADG G
Sbjct: 92 KFAPFACRTR-RVPNKDAEDRSIANLVQQALLPAVRLELLPKSSLDIFVTILEADGLAGA 150
Query: 131 RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLD 190
+A AA+ AL AGI M +VT+C+A + LD + E + G + + +P L
Sbjct: 151 VAAASTAASAALAHAGIEMFGLVTACAASVVGDEVWLDPDEDEQARGRGTLVLACMPALG 210
Query: 191 KVTLLQMDAKL 201
VT + +L
Sbjct: 211 SVTSVWQTGRL 221
>gi|408376899|ref|ZP_11174502.1| ribonuclease PH [Agrobacterium albertimagni AOL15]
gi|407748858|gb|EKF60371.1| ribonuclease PH [Agrobacterium albertimagni AOL15]
Length = 238
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV----YGPREVQNKSQQMSD 64
+R GR+ +MR++ E A+GS + + G+T V+ P ++N S
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRN-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ V EY M +TGDRM++ K R+ EI +I +++ A + + QI I
Sbjct: 56 KGWVTAEYGMLPRATGDRMKREAASGKQSGRTQEIQRLIGRSLRAIVDLEALGERQISID 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I A +AL D M +D + + S G S P++D
Sbjct: 116 CDVIQADGGTRTAAITGAFIALHDCLKWMEARSMIKVEKVLKDHIAAVSCGIFASQPVID 175
Query: 169 LNYVEDSAGGPDV 181
L+Y+EDSA D
Sbjct: 176 LDYLEDSAAETDA 188
>gi|90415478|ref|ZP_01223412.1| ribonuclease PH [gamma proteobacterium HTCC2207]
gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
Length = 239
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R GRRP ++R ++ A+GS + E G TKVI A+V PR ++ K +
Sbjct: 3 RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPGVPRFLRGKGE----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M STG RM + K R+ EI +I +++ A + + I+I
Sbjct: 58 GWVTAEYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +A+ DA P+ ++ S S G TP+LDL+
Sbjct: 118 DVIQADGGTRTASITGACVAMVDAIRHLQRKKAILDDPLLCMIASVSVGIYKGTPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 178 YPEDSKAETDMNV 190
>gi|404493674|ref|YP_006717780.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
gi|77545709|gb|ABA89271.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
Length = 244
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 18/226 (7%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P+E+R + G A+GS + G T+V+ V + + Q +
Sbjct: 8 RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQG-QGWIT 66
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM +T R + K R++EI +I +++ A ++ I I VLQ
Sbjct: 67 AEYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQ 126
Query: 126 ADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G+ P+RD V++ S G ++ PLLDL+Y ED
Sbjct: 127 ADGGTRTAAITGAYVALHDAVYGLVRENQLSDSPLRDSVSAVSVGLVDGHPLLDLDYAED 186
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGCK 218
D+ I + V + + P +D+ LA+ GC+
Sbjct: 187 FRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCR 232
>gi|415717767|ref|ZP_11467002.1| ribonuclease PH [Gardnerella vaginalis 1500E]
gi|415728903|ref|ZP_11472241.1| ribonuclease PH [Gardnerella vaginalis 6119V5]
gi|388060650|gb|EIK83334.1| ribonuclease PH [Gardnerella vaginalis 1500E]
gi|388064903|gb|EIK87418.1| ribonuclease PH [Gardnerella vaginalis 6119V5]
Length = 253
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 28/206 (13%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA----VYGPREVQ 56
+E V P +R+DGR E+R +R +GS + E GNT+V+ V PR +
Sbjct: 8 LESVKP--IRVDGRDVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRR 65
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLM 112
+ S V EYSM +T +R + K R+ EIS +I + + + M
Sbjct: 66 D-----SGLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAM 120
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAG 159
QI I VLQADGGTR+A + A +AL D A ++D V++ S G
Sbjct: 121 GECQIQIDCDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVLKDAVSAVSVG 180
Query: 160 YLNSTPLLDLNYVEDSAGGPDVTVGI 185
+N TP+LDL YVEDS D+ V +
Sbjct: 181 VINGTPMLDLPYVEDSQAMTDMNVAM 206
>gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36]
gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36]
Length = 237
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 23/236 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R GR+ E+R + E G A+GSA+ +MG+T V+ ++++ + S
Sbjct: 1 MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTAT----IEDRVPPFIKGSGL 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M +T RMR+ K R+ EI +I + + A + + QI I
Sbjct: 57 GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR A I +AL+ A P+ D V + S G P+LDL+
Sbjct: 117 DVLQADGGTRCASITGGWVALKLAVNKLMKAGDVVSDPLVDPVAAISCGIYAGQPVLDLD 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
Y EDS G D I+ K+ +QM A+ T + + + QL K VA + +
Sbjct: 177 YPEDSEAGVDGNF-IMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEK 231
>gi|441505804|ref|ZP_20987784.1| Ribonuclease PH [Photobacterium sp. AK15]
gi|441426534|gb|ELR64016.1| Ribonuclease PH [Photobacterium sp. AK15]
Length = 238
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 28/236 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR +++R + A A+GS + E G+TKVI A+V PR ++ K Q
Sbjct: 1 MRPSGRNASQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRWLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + ++ I +
Sbjct: 57 -GWVTAEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P++ +V + S G N + DL
Sbjct: 116 CDVIQADGGTRTASITGAMVALVDAINYMLENGMLKKSPLKGMVAAVSVGIYNGEAICDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCKAVAN 222
YVEDSA D+ V ++ K+ +Q A+ + E++ + LA EG + N
Sbjct: 176 EYVEDSAAETDMNV-VMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGIADIIN 230
>gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
gi|226736897|sp|B3PGE8.1|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
Length = 239
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSDQ 65
R GR P +R +R A+GS + E G+TKVI + V G P ++ + Q
Sbjct: 3 RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A I + + + I +
Sbjct: 58 GWLTAEYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA P++ + S S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAWVALADAVAWLKAEGRVTDEPLKRAIASVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y EDSA D+ V
Sbjct: 178 YPEDSAADTDMNV 190
>gi|407972946|ref|ZP_11153859.1| ribonuclease PH [Nitratireductor indicus C115]
gi|407431717|gb|EKF44388.1| ribonuclease PH [Nitratireductor indicus C115]
Length = 238
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R EMR + E G A+GS + G+T V+ V + S Q V
Sbjct: 1 MRPSKREADEMRAVSFERGVSKHAEGSCLVRFGDTHVLCTASLEERVPGWLRN-SGQGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STGDRMR+ K R+ EI +I +++ + + + Q+ + VL
Sbjct: 60 TAEYGMLPRSTGDRMRREASSGKQGGRTLEIQRLIGRSLRSVVDLQALGEKQVTVDCDVL 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D M +D V + S G N P+LDL+Y
Sbjct: 120 QADGGTRTAAITGGFIALSDCLSWMEARQMIVRDKVLKDHVAAISCGIYNGNPVLDLDYA 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDS D ++ + +Q A+ F +M LA +G
Sbjct: 180 EDSTAQTDANF-VMTGKGGIVEIQGTAEGEPFSEGEFASLMGLARKG 225
>gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514]
gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514]
Length = 255
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ--- 65
LR DGR P ++R LR + A GS + E GNT+VI V V + M +Q
Sbjct: 17 LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESV---PRWMKEQNVI 73
Query: 66 -ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EYSM +ST R + K K D RS EI +I + M A I + I +
Sbjct: 74 GGWITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVD 133
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I A +AL A PM V + S G +N PLLDL
Sbjct: 134 CDVLQADGGTRTAAITGAYVALSLAVRKLMSEGKLKESPMLHAVAAVSVGVVNRQPLLDL 193
Query: 170 NYVEDSAGGPDVTV 183
YVED+A D+ +
Sbjct: 194 CYVEDAAAAVDLNL 207
>gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2']
gi|345864822|ref|ZP_08817018.1| ribonuclease PH [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124059|gb|EGW53943.1| ribonuclease PH [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 239
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R GR+P ++R +R A+GS + E G+TKVI V + + V
Sbjct: 1 MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQG-RGWV 59
Query: 69 RCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RM + K R+ EI +I +++ A I + I + V+
Sbjct: 60 TAEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL DA PM V S S G TP+LDL+Y E
Sbjct: 120 QADGGTRTASITGAWIALHDAVQHILQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYAE 179
Query: 174 DSAGGPDVTV 183
DS+ D+ V
Sbjct: 180 DSSAETDMNV 189
>gi|381153456|ref|ZP_09865325.1| ribonuclease PH [Methylomicrobium album BG8]
gi|380885428|gb|EIC31305.1| ribonuclease PH [Methylomicrobium album BG8]
Length = 240
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR+P ++R+++ G A+GS + E G+T+VI A+V PR ++ K +
Sbjct: 1 MRPSGRQPDQLREIKFTCGYTKHAEGSVLVEFGDTRVICTASVDSQVPRFLKGKGE---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I +++ A + + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMGREASSGKQGGRTMEIQRLIGRSLRAAVDLKALGENTITID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I +AL A P+ V S S G N P+LDL
Sbjct: 116 CDVLQADGGTRTASITGGFVALSLAVRQMLKKRLIKASPLHGQVASVSVGIYNGVPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ V
Sbjct: 176 DYNEDSNAETDMNV 189
>gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1]
gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1]
Length = 255
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR E+R++ E G +A+GSA+ G TKV+ PR + K +
Sbjct: 3 RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGK----- 57
Query: 66 ALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EYSM ST RM K K R+ EIS +I +++ A + + + I I
Sbjct: 58 GWVTAEYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA + D + + S G ++ P+LD
Sbjct: 118 DVLQADGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLD 177
Query: 169 LNYVEDSAGGPDVTV 183
L YVED D+ V
Sbjct: 178 LAYVEDVRAETDMNV 192
>gi|398785609|ref|ZP_10548543.1| ribonuclease PH [Streptomyces auratus AGR0001]
gi|396994343|gb|EJJ05385.1| ribonuclease PH [Streptomyces auratus AGR0001]
Length = 243
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 22/237 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ + + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGTGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAITWAQGKKLIKHGRKPLTGTVSAVSVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + + +Q A+ + ++ LA+ GC + RE
Sbjct: 182 EDVRADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCGTLDATQRE 237
>gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
Length = 242
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 20/228 (8%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R +R ++ + DGS + E GNTKVI V + +Q V EY
Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVP-PFLRGKNQGWVTAEYG 67
Query: 74 MANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADGG
Sbjct: 68 MLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127
Query: 130 TRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
TR+A I A +AL A GI P+R+ V + S G + PLLDL+Y EDS
Sbjct: 128 TRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISVGIVGGVPLLDLDYPEDSGCD 187
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFED---VMQLAIEGCKAVANY 223
DV + ++ K+ +Q A+ + E+ ++ LA +G + + Y
Sbjct: 188 SDVNI-VMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRY 234
>gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015]
gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015]
Length = 240
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 89/191 (46%), Gaps = 20/191 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQAL 67
R GR+ ++R +R A+GS + E GNTKVI V K Q Q
Sbjct: 4 RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQ---GQGW 60
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M STG RM + K R+ EI +I +++ A I + QI + V
Sbjct: 61 VTAEYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDV 120
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
+QADGGTR+A I A +AL DA P+ V S S G TP+LDL+Y
Sbjct: 121 IQADGGTRTASITGAFVALTDAVNQLINDGKLSKSPLLGQVASISVGIYEGTPVLDLDYP 180
Query: 173 EDSAGGPDVTV 183
EDS D+ V
Sbjct: 181 EDSNAETDMNV 191
>gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2]
gi|123345879|sp|Q0VT66.1|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2]
Length = 238
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR P ++R+L A+GS + GNTKV+ A+V PR ++ K Q
Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQ---- 56
Query: 65 QALVRCEYSMANFST----GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EYSM ST G + K R+ EI +I +++ A + + I +
Sbjct: 57 -GWLTAEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I+ A +AL DA P+ +V + S G TP+LDL
Sbjct: 116 CDVLQADGGTRTASISGACVALVDAFTYLLETKKIKNDPLTGLVGAVSVGMYKDTPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS G D+ V
Sbjct: 176 DYAEDSNAGTDMNV 189
>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
gi|410209962|gb|JAA02200.1| exosome component 6 [Pan troglodytes]
gi|410209964|gb|JAA02201.1| exosome component 6 [Pan troglodytes]
gi|410268124|gb|JAA22028.1| exosome component 6 [Pan troglodytes]
gi|410289018|gb|JAA23109.1| exosome component 6 [Pan troglodytes]
Length = 272
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---AGYLNSTPLLDLNYVEDSAGGP 179
+L+ G +A + AA LAL DAG+ M D+V C A T LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA 209
Query: 180 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL T ++ + ++L +EGC+
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQ 249
>gi|188996726|ref|YP_001930977.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
sp. YO3AOP1]
gi|254782742|sp|B2V900.1|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 703
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY--GPREVQNKSQQMSD 64
E +R+DGR+P E+R + ++G + GSA+F G T+ V P E Q + +
Sbjct: 309 ENIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAG 368
Query: 65 QALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ L R Y+ FSTG+ RR + + +E I + I +
Sbjct: 369 ETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYVIRVVSD 428
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSAGG 178
+L+++G T A + +LAL DAG+PM+ V + G + S L D+ ED G
Sbjct: 429 ILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLG- 487
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
D+ + T D VT +QMD K+ T E ++Q A+E + NYI
Sbjct: 488 -DMDFKVAGTRDGVTSIQMDIKVKGLTRE-ILQKALEQAREGRNYI 531
>gi|386840465|ref|YP_006245523.1| ribonuclease PH [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374100766|gb|AEY89650.1| ribonuclease PH [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451793758|gb|AGF63807.1| ribonuclease PH [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 244
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M A + GDR K K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLD----KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVA 221
ED D+ V + T D +V A + ++ LA+ GC+ +A
Sbjct: 182 EDVRADTDMNV--VCTGDGRFVEVQGTAEAAPFAREELDALLDLAVTGCRELA 232
>gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
Length = 246
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 23/236 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR ++R ++ +A A+GS + E GNT+V+ V E + +Q S + V
Sbjct: 5 RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLC-VASLTEGVPRWRQGSGEGWVT 63
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM +T R + K K R+ EIS +I +++ A + T + + I + VLQ
Sbjct: 64 AEYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQ 123
Query: 126 ADGGTRSACINAATLALQDA---G-----IP--------MRDIVTSCSAGYLNSTPLLDL 169
ADGGTR+A I A +AL DA G IP ++D V + S G ++ P LDL
Sbjct: 124 ADGGTRTASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDL 183
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVANY 223
Y ED D+ V + + + + + P E ++ LA GCK +A +
Sbjct: 184 PYEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKELAVF 239
>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Pseudomonas Aeruginosa
Length = 239
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQXVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|424868016|ref|ZP_18291784.1| Ribonuclease PH [Leptospirillum sp. Group II 'C75']
gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
gi|387221611|gb|EIJ76152.1| Ribonuclease PH [Leptospirillum sp. Group II 'C75']
Length = 245
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+P +R L + G A+GS + EMGNTKV+ V+ K + DQ
Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTA----SVEEKVPPFLKDQGK 57
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M ST +R K K R+ EI +I +++ + + T M I I
Sbjct: 58 GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 117
Query: 122 QVLQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR+A I+ +A L G+ P+R+ + + S G + P+LDL
Sbjct: 118 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGLPVLDLC 177
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ +
Sbjct: 178 YTEDSGAETDMNL 190
>gi|418938154|ref|ZP_13491716.1| Ribonuclease PH [Rhizobium sp. PDO1-076]
gi|375055155|gb|EHS51428.1| Ribonuclease PH [Rhizobium sp. PDO1-076]
Length = 238
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV----YGPREVQNKSQQMSD 64
+R GR+ +MR++ E A+GS + + G+T V+ P ++N S
Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRN-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ V EY M +TGDRM++ K R+ EI +I +++ A + + QI I
Sbjct: 56 KGWVTAEYGMLPRATGDRMKREAASGKQSGRTQEIQRLIGRSLRAIVDLEALGERQISID 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I A +AL D M +D + + S G S P++D
Sbjct: 116 CDVIQADGGTRTASITGAFIALHDCLKWMETRNMIKVEKVLKDHIAAISCGIFASQPVID 175
Query: 169 LNYVEDSAGGPDV 181
L+Y+EDSA D
Sbjct: 176 LDYLEDSAAETDA 188
>gi|337291437|ref|YP_004630458.1| ribonuclease PH [Corynebacterium ulcerans BR-AD22]
gi|397654621|ref|YP_006495304.1| ribonuclease PH [Corynebacterium ulcerans 0102]
gi|334699743|gb|AEG84539.1| ribonuclease PH [Corynebacterium ulcerans BR-AD22]
gi|393403577|dbj|BAM28069.1| ribonuclease PH [Corynebacterium ulcerans 0102]
Length = 244
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 33/245 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR +MR ++ G GS + E GNT+V+ V + ++ S + +
Sbjct: 8 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVP-RFKRDSGEGWLT 66
Query: 70 CEYSMANFSTGDR-----MR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EY+M +T DR MR K KG R+ EIS +I +++ A + + + I+I V
Sbjct: 67 AEYAMLPAATLDRNPRESMRGKVKG--RTHEISRLIGRSLRAAVDLSELGENTINIDCDV 124
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P++D V + S G ++ T LDL Y
Sbjct: 125 LQADGGTRTASITGAYVALADAIAHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDLPYE 184
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE-----DVMQLAIEGCKAVANYIREV 227
EDS D+ V + +++ NTF+ ++ A +GC + EV
Sbjct: 185 EDSRADVDMNV----IMQSGRFVEIQGTGEHNTFDRDELARILDFAEKGCAELV----EV 236
Query: 228 RKFLL 232
+K +L
Sbjct: 237 QKAVL 241
>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
Length = 238
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGENVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
Length = 239
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQGEPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
gi|226736945|sp|B2V890.1|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
Length = 257
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 116/245 (47%), Gaps = 31/245 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R DGR+P ++R ++ A+GS + E GNTKVI V++K + + Q
Sbjct: 1 MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTA----SVEDKVPPFLKGTGQ 56
Query: 66 ALVRCEYSMANFSTGDRMRK------PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ EYSM ++ R + P G R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYSMIPRASETRSLREVVRGSPSG--RTHEIQRLIGRSLRAAVDLKKLGEKTIWI 114
Query: 120 FVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR A I A +A+ DA I P++D V + S G + + +LD
Sbjct: 115 DCDVIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISVGKVRNEIVLD 174
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF--EDVMQLAIEGCKAVANYIRE 226
LNY EDS D+ L K +++ A NTF ED ++ G + I+
Sbjct: 175 LNYTEDSNAQVDMN---LVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKI 231
Query: 227 VRKFL 231
++F+
Sbjct: 232 QKEFI 236
>gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
gi|189043776|sp|A8H9B7.1|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
Length = 237
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G+TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM++ K R+ EI +I +++ A + L+ + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G P+ DL
Sbjct: 116 CDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y+EDSA D+ V ++ K+ +Q A+ + E+++ L
Sbjct: 176 EYIEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFSHEELLSL 217
>gi|383643957|ref|ZP_09956363.1| ribonuclease PH [Streptomyces chartreusis NRRL 12338]
Length = 245
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 22/236 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+T+V V + ++ S + V
Sbjct: 3 RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTRVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR K + R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
ED D+ V + + +Q A+ + ++ LA+ GC +A + R
Sbjct: 182 EDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTELAAHQR 236
>gi|384516261|ref|YP_005711353.1| ribonuclease PH [Corynebacterium ulcerans 809]
gi|334697462|gb|AEG82259.1| ribonuclease PH [Corynebacterium ulcerans 809]
Length = 244
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 33/245 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR +MR ++ G GS + E GNT+V+ V + ++ S + +
Sbjct: 8 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVP-RFKRDSGEGWLT 66
Query: 70 CEYSMANFSTGDR-----MR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EY+M +T DR MR K KG R+ EIS +I +++ A + + + I+I V
Sbjct: 67 AEYAMLPAATLDRNPRESMRGKVKG--RTHEISRLIGRSLRAAVDLSELGENTINIDCDV 124
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P++D V + S G ++ T LDL Y
Sbjct: 125 LQADGGTRTASITGAYVALADAITHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDLPYE 184
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE-----DVMQLAIEGCKAVANYIREV 227
EDS D+ V + +++ NTF+ ++ A +GC + EV
Sbjct: 185 EDSRADVDMNV----IMQSGRFVEIQGTGEHNTFDRDELARILDFAEKGCAELV----EV 236
Query: 228 RKFLL 232
+K +L
Sbjct: 237 QKAVL 241
>gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102]
gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102]
Length = 242
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR +R ++ + ADGS + E GNTKVI V + +Q V EY
Sbjct: 8 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVP-PFLRGKEQGWVTAEY 66
Query: 73 SMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADG
Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126
Query: 129 GTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +ALQ A G+ P+R+ V + SAG + PLLDL+Y EDS
Sbjct: 127 GTRTASITGAYVALQIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
DV + I+ K+ +Q A+ + E++ +L K +A ++ + LL
Sbjct: 187 DSDVNI-IMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQKAALL 240
>gi|373853900|ref|ZP_09596699.1| Ribonuclease PH [Opitutaceae bacterium TAV5]
gi|391229167|ref|ZP_10265373.1| ribonuclease PH [Opitutaceae bacterium TAV1]
gi|372473427|gb|EHP33438.1| Ribonuclease PH [Opitutaceae bacterium TAV5]
gi|391218828|gb|EIP97248.1| ribonuclease PH [Opitutaceae bacterium TAV1]
Length = 249
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKSQQMSDQALV 68
R DGRR ++R + E A GS + GNT+VI A ++V QQ +
Sbjct: 6 RADGRRADQLRPISFEANIAPHATGSVLVSFGNTRVICAATIEQKVPLWMKQQKIPGGWL 65
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYS+ +ST DR + K K D R+ EI +I +++ A + + + + I VL
Sbjct: 66 TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRSLRAVLDLARLGENTLWIDCDVL 125
Query: 125 QADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A LA L D+G P+ D + + S G L+ LLDL Y+E
Sbjct: 126 QADGGTRTASITGAWLAARLAIQTLIDSGKLAENPLTDSIAAISVGVLDGRELLDLPYLE 185
Query: 174 DSAGGPDVTV 183
D D V
Sbjct: 186 DKDAQVDFNV 195
>gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2]
gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2]
Length = 237
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R GR+ EMR + E G + A+GS + +MG T V+ + +++K+ + +
Sbjct: 1 MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSAT----IEDKAPPFLKNTGL 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M +T R R+ K R+ EI +I + + A + + QI I
Sbjct: 57 GWVTAEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116
Query: 122 QVLQADGGTRSACINAATLALQ-------DAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR A I +AL+ AG+ PM D V + S G P+LDL+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAMNKLLKAGVIVSDPMIDHVAAVSCGIYAGQPVLDLD 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y EDSA G D IL ++ +QM A+ T + ++ +L
Sbjct: 177 YAEDSAAGTDGNF-ILTGRGRLIEVQMSAEGATFSRAEMGEL 217
>gi|410479724|ref|YP_006767361.1| Rnase [Leptospirillum ferriphilum ML-04]
gi|406774976|gb|AFS54401.1| Rnase [Leptospirillum ferriphilum ML-04]
Length = 287
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+P +R L + G A+GS + EMGNTKV+ V+ K + DQ
Sbjct: 44 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTA----SVEEKVPPFLKDQGK 99
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M ST +R K K R+ EI +I +++ + + T M I I
Sbjct: 100 GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 159
Query: 122 QVLQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR+A I+ +A L G+ P+R+ + + S G + P+LDL
Sbjct: 160 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLC 219
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ +
Sbjct: 220 YTEDSGAETDMNL 232
>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
gi|227116607|ref|YP_002818503.1| ribonuclease PH [Vibrio cholerae O395]
gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
Length = 257
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIQPQEGRDPMRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ + E +++L K
Sbjct: 184 GILGEDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4]
gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7]
gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3]
gi|123131815|sp|Q0HZV0.1|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123324577|sp|Q0HE49.1|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228320|sp|A0L1S6.1|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4]
gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7]
gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3]
Length = 237
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 29/238 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I + + AC+ + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G N + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
YVEDSA D+ V ++ K+ +Q A+ + E++++L N IRE+
Sbjct: 176 EYVEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFSHEELIEL----LGLAKNSIREI 228
>gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A]
gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A]
gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A]
Length = 258
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 75
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 76 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 195
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 196 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 245
>gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|61216065|sp|Q8G7I0.2|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 248
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 65
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 66 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 125
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 126 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 185
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 186 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 235
>gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F]
gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217]
gi|384202135|ref|YP_005587882.1| ribonuclease PH [Bifidobacterium longum subsp. longum KACC 91563]
gi|419853144|ref|ZP_14375980.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
2-2B]
gi|419854079|ref|ZP_14376871.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 44B]
gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM
1217]
gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
157F]
gi|338755142|gb|AEI98131.1| ribonuclease PH [Bifidobacterium longum subsp. longum KACC 91563]
gi|386408710|gb|EIJ23603.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
2-2B]
gi|386418149|gb|EIJ32616.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 44B]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 71
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 72 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 131
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 132 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 191
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 192 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 241
>gi|359149350|ref|ZP_09182375.1| ribonuclease PH [Streptomyces sp. S4]
Length = 241
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 91/182 (50%), Gaps = 18/182 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R L E A+GS + G+TKV+ V + ++ S + V
Sbjct: 3 RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G + STPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAIAWAQGKKIIKPGRKPLTGTVAAVSVGIVGSTPLLDLCYE 181
Query: 173 ED 174
ED
Sbjct: 182 ED 183
>gi|384198440|ref|YP_005584183.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 71
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 72 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 131
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 132 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 191
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 192 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 241
>gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697
= JCM 1222]
gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697
= JCM 1222]
Length = 258
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 75
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 76 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 195
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 196 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 245
>gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705]
gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. longum ATCC 55813]
gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68]
gi|419847570|ref|ZP_14370737.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
1-6B]
gi|419851271|ref|ZP_14374220.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 35B]
gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705]
gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8]
gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68]
gi|386406527|gb|EIJ21529.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 35B]
gi|386410566|gb|EIJ25344.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
1-6B]
Length = 258
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 75
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EYSM +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 76 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 195
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 196 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 245
>gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1]
gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1]
Length = 245
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 22/228 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQA 66
+R DGR P ++R +R I A+GSA+ EMGNT+V+ V + QQ +
Sbjct: 2 VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQ---RG 58
Query: 67 LVRCEYSMANFSTGDRMRKPKG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
V EY++ ST R R+ + R+ EI +I + + A + + + + VL
Sbjct: 59 WVTGEYALLPRSTAQRTRRERNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDVL 118
Query: 125 QADGGTRSACINAATLAL-----------QDAGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL + A P++ V + SAGY+ LLDL+Y E
Sbjct: 119 QADGGTRTASITGGYVALALALHRLTAEGRLASNPLQRAVAAVSAGYVAGCALLDLDYSE 178
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCK 218
DS D + +L + +Q A+ + F+ ++ LA +G +
Sbjct: 179 DSVADMDCNL-VLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIR 225
>gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)]
gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24]
gi|21759422|sp|Q9S2H7.1|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)]
gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24]
Length = 245
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 26/239 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGR P ++R + E G A+GS + G+TKV+ A+V E + ++ S +
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVT---EGVPRWRKGSGEGW 59
Query: 68 VRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M A + GDR K + R+ EIS +I +++ A I + + + + V
Sbjct: 60 VTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDV 119
Query: 124 LQADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A I A +AL DA P+ V++ S G ++ TPLLDL
Sbjct: 120 LQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLR 179
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
Y ED D+ V + + +Q A+ + ++ LA GC +A R+
Sbjct: 180 YEEDVRADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRK 237
>gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
Length = 244
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 24/237 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQA 66
R+DGR+P EMRQ+R A+GS + E+G+T V+ V++K + +++
Sbjct: 3 RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTAT----VEDKVPPFLRGANKG 58
Query: 67 LVRCEYSMANFSTGDRMRKPKG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
V EY+M +T R + +G R+ EI +I + + + + + + + VL
Sbjct: 59 WVTAEYAMLPRATDLRTGRERGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVL 118
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +A+ DA P+++ + + S G +N+ +LDL Y E
Sbjct: 119 QADGGTRTASITGAFVAMTDALYKLAVNGQIKKFPIKEFIAATSVGRVNNEMVLDLCYKE 178
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCKAVANYIREV 227
DSA D+ + ++ D+ +Q + T + +V + LA G K++ + EV
Sbjct: 179 DSAAEVDMNI-VMTGGDRFVEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEV 234
>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
Length = 257
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIQPQEGRDPMRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ + E +++L K
Sbjct: 184 GILGEDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|346472235|gb|AEO35962.1| hypothetical protein [Amblyomma maculatum]
Length = 226
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 11 LDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRC 70
+D + +R+L A+ N+++ DGSA+ G T V A VYGP EV+ +++++ ++A V
Sbjct: 1 MDTSQTGRLRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPAEVK-QARELHEKATVEV 59
Query: 71 EY--SMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
+ + S DR+ + V+R T+E +LT L PRS I + Q L DG
Sbjct: 60 FFRSKSGHQSCSDRLTEK-----------VVRSTLETAMLTALHPRSCISLTCQELHNDG 108
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDLNYVEDSAGGPDVTVGILP 187
G + CINA+ LA+ DA + M+ + + +A T +LD + ++ T+
Sbjct: 109 GLLACCINASCLAVIDAAVSMKCHIAAVTAALTQEGTVVLDPSRQQEEEAKAVCTLSFES 168
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
K+ + F+ + L C+A A I
Sbjct: 169 QESKLVSTHTTGHFSKDEFQKCLAL----CQAAAGDI 201
>gi|328541647|ref|YP_004301756.1| ribonuclease PH [Polymorphum gilvum SL003B-26A1]
gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1]
Length = 237
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQA 66
+R R E+R + E G A+GS + + G+T V+ V + QQ +
Sbjct: 1 MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQ---RG 57
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY M +TG+RMR+ K R+ EI +I +++ A + + QI +
Sbjct: 58 WVTAEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCD 117
Query: 123 VLQADGGTRSACINAATLALQDAGIPMR-----------DIVTSCSAGYLNSTPLLDLNY 171
V+QADGGTR+A I A +AL+D MR D V + S G TP+LDL+Y
Sbjct: 118 VIQADGGTRTASITGAWVALRDCIEWMRARDMVTKPVLKDHVAAISCGIYKGTPVLDLDY 177
Query: 172 VEDSAGGPD 180
VEDSA D
Sbjct: 178 VEDSAAETD 186
>gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
gi|61215999|sp|Q7MBD4.1|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
Length = 238
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R MR +R A+GS + E G+TKVI E + Q V
Sbjct: 1 MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTA-SVEETVPSFLKGKGQGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG RMR+ K R+ EI +I +++ A + QI I V+
Sbjct: 60 TAEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL DA P+RD V + S G P+LDL+Y+E
Sbjct: 120 QADGGTRTASITGAYVALADAIRGLIDAGKLSATPLRDQVAAVSVGVYKGQPVLDLDYLE 179
Query: 174 DS 175
DS
Sbjct: 180 DS 181
>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
Length = 238
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
Length = 252
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 16/195 (8%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ-QMS 63
+P R D R ++R + E G A GS + G T+VI A ++V + Q
Sbjct: 6 TPPFARPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASIDKKVPGWMRAQGV 65
Query: 64 DQALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + EYSM +ST DR + + K D R+ EI +I +++ A +P I I
Sbjct: 66 EGGWMTAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWI 125
Query: 120 FVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I+ A +A Q A P D V + S G TP+LD
Sbjct: 126 DCDVLQADGGTRTASISGAYVAAQIAVQKLIAAGELEANPFTDSVAAISVGVFQDTPVLD 185
Query: 169 LNYVEDSAGGPDVTV 183
LNY ED D +
Sbjct: 186 LNYPEDKDASVDANI 200
>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 243
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 28/240 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR E+R + G A+GSA+ E GNT+V+ PR ++ + +
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGK----- 59
Query: 66 ALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M +T R + KG R+ EIS +I +++ A I + + I +
Sbjct: 60 GWVTAEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDC 119
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA P+ D V++ S G ++ TP+LD
Sbjct: 120 DVLQADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLD 179
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGCKAVANYIRE 226
L Y ED D+ V + + V + +P + ++ LA+EG +A RE
Sbjct: 180 LPYTEDVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQRE 239
>gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
102761]
Length = 238
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 28/234 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR +++R + A A+GS + E GNTKVI A+V PR ++ + +
Sbjct: 1 MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + ++ I +
Sbjct: 57 -GWVTAEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P++ +V + S G N P+ DL
Sbjct: 116 CDVIQADGGTRTASITGAMVALVDAIHYMLEKGMIKKNPLKTMVAAVSVGIYNGEPICDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCKAV 220
Y+EDSA D+ V ++ K+ +Q A+ + E++ + LA EG +
Sbjct: 176 EYLEDSAAETDMNV-VMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEI 228
>gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
Length = 243
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 31 KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP---- 86
ADGS + GNTKVI V + +Q V EY M ST RM++
Sbjct: 25 HADGSVLMVCGNTKVICTATVDDNVP-PFLRGKNQGWVTAEYGMLPASTQSRMKREAAAG 83
Query: 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQ--- 143
K R+ EI +I +++ AC+ L+ QI I V+QADGGTR+A I A +ALQ
Sbjct: 84 KQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADGGTRTASITGAFVALQIAI 143
Query: 144 ----DAGI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G P+ V + SAG +N PLLDL+Y EDS DV + +L
Sbjct: 144 QKLLDNGTLPANPLIGSVAAVSAGMVNGVPLLDLDYPEDSGCDSDVNIVML 194
>gi|393763112|ref|ZP_10351735.1| ribonuclease PH [Alishewanella agri BL06]
gi|392606029|gb|EIW88917.1| ribonuclease PH [Alishewanella agri BL06]
Length = 239
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 25/242 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR +++R L A A+GS + E GNTKVI A+V PR ++ K Q
Sbjct: 1 MRPSGRTASQIRPLAFTRQFTAHAEGSVLVEFGNTKVICTASVTEGVPRFLKGKGQ---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M A S DR + K R+ EI +I + + + L+ + I I
Sbjct: 57 -GWITAEYGMLPRATHSRNDREAARGKQGGRTMEIQRLIGRALRTAVDLSLLGENTITID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P+R +V + S G + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNFMLAKGLIKKNPLRYMVAAVSVGIYQGAAVADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+Y EDSA D+ + ++ +V +Q A+ +F + Q+ G A+ + E ++
Sbjct: 176 DYAEDSAAETDMNL-VMTEQGEVIEIQGTAEEAPFSFAQMQQMLELGAAAITEIVAEQKR 234
Query: 230 FL 231
L
Sbjct: 235 VL 236
>gi|336367598|gb|EGN95942.1| hypothetical protein SERLA73DRAFT_185379 [Serpula lacrymans var.
lacrymans S7.3]
Length = 260
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 9/210 (4%)
Query: 12 DGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCE 71
+GR P ++R + + G + +A+GSA E TK+ AVYGPR Q+K+ S+ + E
Sbjct: 38 EGRSPQDIRPIFLQPGLINQANGSAYIETDKTKIACAVYGPR--QSKTTTFSENGRLNVE 95
Query: 72 YSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR 131
+ FS R + P D +++ I Q + + + L+P+S ID+F+ +++ DG
Sbjct: 96 VKFSPFSCA-RRKAPLRDAEDRSLAVSIHQAVLSSVRLELLPKSTIDVFITIIENDG--I 152
Query: 132 SACINAATL----ALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
CI++ T+ AL DAGI + +V SCSA L LD E + + +P
Sbjct: 153 EGCISSGTIAASAALADAGIEVLGLVASCSAAALGDEIWLDPTEKEARKSEGTLILACMP 212
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
L VT + ++ + L E C
Sbjct: 213 ALGIVTNVWQSGRMTVEKATQCLDLCQERC 242
>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
Length = 253
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 28/206 (13%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA----VYGPREVQ 56
+E V P +R+DGR E+R +R +GS + E GNT+V+ V PR +
Sbjct: 8 LESVKP--IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRR 65
Query: 57 NKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLM 112
+ S V EYSM +T +R + K R+ EIS +I + + + M
Sbjct: 66 D-----SGLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAM 120
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAG 159
QI I VLQADGGTR+A + A +AL D A ++D +++ S G
Sbjct: 121 GECQIQIDCDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVG 180
Query: 160 YLNSTPLLDLNYVEDSAGGPDVTVGI 185
+N TP+LDL YVEDS D+ V +
Sbjct: 181 VINGTPMLDLPYVEDSQAMTDMNVAM 206
>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|417822383|ref|ZP_12468983.1| ribonuclease PH [Vibrio cholerae HE48]
gi|424810044|ref|ZP_18235411.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449145443|ref|ZP_21776249.1| ribonuclease PH [Vibrio mimicus CAIM 602]
gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|340049626|gb|EGR10540.1| ribonuclease PH [Vibrio cholerae HE48]
gi|342322682|gb|EGU18470.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449078982|gb|EMB49910.1| ribonuclease PH [Vibrio mimicus CAIM 602]
Length = 238
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|226736939|sp|B8CM22.1|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3]
Length = 237
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G+TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I +++ A + L+ + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G P+ DL
Sbjct: 116 CDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y+EDSA D+ V ++ K+ +Q A+ T E+++ L
Sbjct: 176 EYIEDSAAETDMNV-VMTETGKMIEIQGTAEGEPFTHEELLSL 217
>gi|415709494|ref|ZP_11463119.1| ribonuclease PH [Gardnerella vaginalis 6420B]
gi|388056166|gb|EIK79042.1| ribonuclease PH [Gardnerella vaginalis 6420B]
Length = 247
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+E V P +R+DGR E+R +R +GS + E GNT+V+ V + +
Sbjct: 2 LESVKP--IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVP-RWR 58
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
+ S V EYSM +T +R + K R+ EIS +I + + + M Q
Sbjct: 59 RDSGLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQ 118
Query: 117 IDIFVQVLQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNS 163
I I VLQADGGTR+A + A +AL D A ++D +++ S G +N
Sbjct: 119 IQIDCDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVING 178
Query: 164 TPLLDLNYVEDSAGGPDVTVGI 185
TP+LDL YVEDS D+ V +
Sbjct: 179 TPMLDLPYVEDSQAMTDMNVAM 200
>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
Length = 257
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIQPQEGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ + E +++L K
Sbjct: 184 GILGGDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
Length = 238
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR P + R +R A+GS + E G+TKVI V+NK +
Sbjct: 1 MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTA----SVENKVPPFLRGEGK 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I +AL DA P++ ++ + S G TP+LDL+
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVKEGRLKTSPLKQMIAAFSVGVYKGTPVLDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YPEDSEAETDMNV 189
>gi|440694444|ref|ZP_20877062.1| tRNA nucleotidyltransferase [Streptomyces turgidiscabies Car8]
gi|440283554|gb|ELP70805.1| tRNA nucleotidyltransferase [Streptomyces turgidiscabies Car8]
Length = 245
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAITWAQGKKLIRASRQPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + + +Q A+ + ++ LA+ GC +A R+
Sbjct: 182 EDVRAETDMNV-VCTGDGRFVEVQGTAEAEPFARDELNSILDLAVAGCADLAALQRK 237
>gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 438
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 22/190 (11%)
Query: 12 DGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQALV 68
D R+ EMR + E+ + DGS + + GNTKVI +++K + + +
Sbjct: 3 DNRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAM----IEDKVPFFLKGKNSGWL 58
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
CEYSM ST R + + K D RS EI +I +++ +C+ + I I V+
Sbjct: 59 SCEYSMLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVI 118
Query: 125 QADGGTRSACIN----AATLALQDA---GI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
ADGGTR+ IN A +LA+++A GI P+++ V + S G + + LLDLNY E
Sbjct: 119 SADGGTRTTSINGSFIALSLAVKNAIRQGIILENPIKNKVAAISVGIVENEKLLDLNYDE 178
Query: 174 DSAGGPDVTV 183
DS D+ V
Sbjct: 179 DSNAQVDLNV 188
>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
Length = 257
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIEPQEGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ + E +++L K
Sbjct: 184 GILGEDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|392408713|ref|YP_006445320.1| RNAse PH [Desulfomonile tiedjei DSM 6799]
gi|390621849|gb|AFM23056.1| RNAse PH [Desulfomonile tiedjei DSM 6799]
Length = 240
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 24/199 (12%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--K 58
M +V P D R+ E+R ++G + A+GSA+ E G TKVI A V + K
Sbjct: 1 MNYVRP-----DNRQFDELRPWNIQVGVLDYAEGSALVESGKTKVICAATIEDRVPSFLK 55
Query: 59 SQQMSDQALVRCEYSMANFSTGDRMRKPKGDR---RSTEISLVIRQTMEACILTHLMPRS 115
Q ++ V EYSM ST R + +G + R+ EI +I +++ +
Sbjct: 56 DQ---NRGWVTAEYSMLPRSTLTRSPRERGGKIGGRTMEIQRLIGRSLRCVTDLDALGEC 112
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNST 164
I + V+QADGGTR A I A +AL +A G PM D V + S G + T
Sbjct: 113 TITVDCDVIQADGGTRVASITGAWVALHEALKRLAQEGRLDGDPMLDSVAAISVGIVQGT 172
Query: 165 PLLDLNYVEDSAGGPDVTV 183
LLDLNY EDS+ D+ +
Sbjct: 173 ELLDLNYDEDSSAEVDMNI 191
>gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
Length = 277
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR +R ++ + ADGS + E GNTKVI V + +Q V EY
Sbjct: 43 GRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVP-PFLRGKEQGWVTAEY 101
Query: 73 SMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADG
Sbjct: 102 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 161
Query: 129 GTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +ALQ A G+ P+R+ V + SAG + PLLDL+Y EDS
Sbjct: 162 GTRTASITGAYVALQIAVDKLLSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 221
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
DV + I+ K+ +Q A+ + E++ +L K +A ++ + LL
Sbjct: 222 DSDVNI-IMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAALL 275
>gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
Length = 242
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR +R ++ + ADGS + E GNTKVI V + +Q V EY
Sbjct: 8 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVP-PFLRGKEQGWVTAEY 66
Query: 73 SMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADG
Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126
Query: 129 GTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +ALQ A G+ P+R+ V + SAG + PLLDL+Y EDS
Sbjct: 127 GTRTASITGAYVALQIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
DV + I+ K+ +Q A+ + E++ +L K +A ++ + LL
Sbjct: 187 DSDVNI-IMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAALL 240
>gi|442804795|ref|YP_007372944.1| ribonuclease PH [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442740645|gb|AGC68334.1| ribonuclease PH [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 240
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR+ E+R++ + A+GS + E GNTKVI +V ++ + + V
Sbjct: 3 RVDGRKHNELRKINITRNYIYHAEGSVLIEFGNTKVICTASVDDKVP-PFRKGTGEGWVT 61
Query: 70 CEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM +T R + K K + R+ EI +I +++ + + + I I V+Q
Sbjct: 62 AEYSMLPRATQVRNVRDINKLKLNGRAYEIQRLIGRSLRSVVDFKSLGERSIIIDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I +AL DA +P+++ V + S G ++ LLDL Y ED
Sbjct: 122 ADGGTRTASITGGFIALMDACSYLLDKNIITEMPIKNFVAAVSVGIVHENKLLDLCYEED 181
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
+ D+ V ++ ++ LQ +L + +D+ QL K ++ I + LL
Sbjct: 182 ANATVDMNV-VMTDSGQLIELQATGELSPFSRDDLNQLLNMAEKGISELISIQKNILL 238
>gi|374621075|ref|ZP_09693609.1| RNAse PH [gamma proteobacterium HIMB55]
gi|374304302|gb|EHQ58486.1| RNAse PH [gamma proteobacterium HIMB55]
Length = 245
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R GRRP +MR++ E+G +A GS + G+T+V+ A++ P ++ K Q
Sbjct: 8 RPSGRRPDQMREVSFELGFTKQAAGSVLASFGDTRVLCTASISEGVPGFLRGKGQ----- 62
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST R+ + K R+ EI +I +++ A I + I I
Sbjct: 63 GWLTAEYGMLPGSTNSRVDREAVRGKQSGRTVEIQRLIGRSLRASIDLKKLGERTITIDC 122
Query: 122 QVLQADGGTRSACINAATL-------ALQDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR+ I A++ ALQ AG P++ +V++ S G TP+LDL+
Sbjct: 123 DVLQADGGTRTTAITGASVAVVSALNALQRAGELKTDPLKSMVSAVSVGMWQGTPVLDLD 182
Query: 171 YVEDSAGGPDVTVGIL 186
Y EDS D+ + +L
Sbjct: 183 YPEDSTADSDMNIVML 198
>gi|410666789|ref|YP_006919160.1| ribonuclease Rph [Thermacetogenium phaeum DSM 12270]
gi|409104536|gb|AFV10661.1| ribonuclease Rph [Thermacetogenium phaeum DSM 12270]
Length = 241
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 30/242 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R DGR+P E+R +R + A+GS + E+G+TK++ + V++K + ++
Sbjct: 1 MRPDGRKPEELRPVRIHRNYLKYAEGSVLIEIGDTKLVCSA----SVEDKVPPFLKGQEK 56
Query: 66 ALVRCEYSMANFSTGDRMRKPKG------DRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
V EYSM ST +R P+ + RS EI +I +++ + + ++ I +
Sbjct: 57 GWVTAEYSMLPRST--EVRTPRDSTRGRINGRSCEIQRLIGRSLRSVVDLSVLGERTIWV 114
Query: 120 FVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I A +AL DA +P+ D V + S G + + LD
Sbjct: 115 DCDVIQADGGTRTAAITGAFVALVDALRKLKEQEGWERLPVSDYVAAVSVGKVEDSLRLD 174
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE---DVMQLAIEGCKAVANYIR 225
L Y EDS D+ V ++ + +Q A+ T E D++ LA G + + Y +
Sbjct: 175 LCYAEDSRAAVDMNV-VMTGDGRFIEVQGTAEGAPFTEEELYDLLSLASAGIRRLVAYQK 233
Query: 226 EV 227
EV
Sbjct: 234 EV 235
>gi|433772231|ref|YP_007302698.1| ribonuclease PH [Mesorhizobium australicum WSM2073]
gi|433664246|gb|AGB43322.1| ribonuclease PH [Mesorhizobium australicum WSM2073]
Length = 238
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD----------AGIP--MRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D A + ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYI 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDS+ G D ++ + +Q A+ F +M LA +G
Sbjct: 180 EDSSAGTDANF-VMTGKGGIVEIQGTAEGEPFSEEQFAALMGLAKKG 225
>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
pisum]
Length = 279
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 12/231 (5%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR + R L + G V +A GSA E G+TK+I +V+ P+EV NK + L
Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGEL- 98
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
+CE+ A FS R R D ++ +R+ +E I +I I V VL+ DG
Sbjct: 99 QCEFKFATFSCRQR-RTYTRDSEERQLCNELRRALEPAICRGEFANFEIHINVLVLENDG 157
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVG---- 184
+A I AA LAL D IPM D++ + S G + L+D Y E++ + G
Sbjct: 158 SVLAAAITAAGLALMDGCIPMYDVIVATSLGIYKNKILVDPTYDEETLCSSTIDNGENRG 217
Query: 185 -----ILPTLDKVTLLQMDAKLPTNTFEDVMQ-LAIEGCKAVANYIREVRK 229
+ L ++T + + N F + +Q L CK I RK
Sbjct: 218 TVMLAYMKNLQQITEFAQNGSMDVNMFPEYVQILTNHNCKLYKLVISAARK 268
>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
Length = 257
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIQPQEGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ + E +++L K
Sbjct: 184 GILGEDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|417932293|ref|ZP_12575639.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK182B-JCVI]
gi|340774651|gb|EGR97129.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK182B-JCVI]
Length = 254
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 16 RIDGRGLDQLRDVRIERGWLSQAEGSVLVSFGRTIVLCNASVT---EGVPRWRKGSGLGW 72
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKIGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G + P+LDL Y
Sbjct: 133 LQADGGTRTASITGAYVALVDAVNWLRERRGLVSEPITGSVQAISVGVVGGVPMLDLAYE 192
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + + D V + P N +++ LA GC
Sbjct: 193 EDSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRNLLNELLDLAAGGC 239
>gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
Length = 272
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 1 MEFVSPEGLRLDGRRPT-----EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV 55
EF GL+ RP+ E+R + E G A+GS + + G+T V+ V
Sbjct: 23 FEFCLDNGLKGRAMRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERV 82
Query: 56 ------QNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEA 105
QNK V EY M +TG RMR+ K R+ EI +I +++ A
Sbjct: 83 PPWLRGQNK-------GWVTAEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRA 135
Query: 106 CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVT 154
+ + QI + V+QADGGTR+A I A +AL+D +G + D +
Sbjct: 136 VVDLQALGEVQISVDCDVIQADGGTRTAAITGAWVALRDCVEWMKARDMVSGDVLTDHIA 195
Query: 155 SCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQ 211
+ S G STP+LDL+Y EDS D ++ + +Q A+ + F +M
Sbjct: 196 AISCGIYESTPVLDLDYDEDSTAETDANF-VMTGSGGIVEIQGTAEGKPFSEDEFGQLMN 254
Query: 212 LAIEGCK 218
LA G K
Sbjct: 255 LAKAGIK 261
>gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24]
gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24]
Length = 252
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 26/196 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R DGR P ++R + G +A+GSA+ E GNT+V+ PR ++ + +
Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGR---- 66
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ + I T + + I +
Sbjct: 67 -GWVTAEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLD 125
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL +A P+ D + + S G ++ P+L
Sbjct: 126 CDVLQADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPML 185
Query: 168 DLNYVEDSAGGPDVTV 183
DL YVED D+ V
Sbjct: 186 DLPYVEDVRAETDMNV 201
>gi|410665065|ref|YP_006917436.1| ribonuclease PH [Simiduia agarivorans SA1 = DSM 21679]
gi|409027422|gb|AFU99706.1| ribonuclease PH [Simiduia agarivorans SA1 = DSM 21679]
Length = 239
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E GNTKVI A+V PR ++ + Q
Sbjct: 3 RPSGRAVDQLRDVRITRHFTCHAEGSVLVEFGNTKVICTASVEEGVPRFLRGEGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A + + + I I
Sbjct: 58 GWITAEYGMLPRSTGTRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGENTITIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P+ ++ S S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGACVALADAIAYLKEKGLVKGEPLARMIASVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ +
Sbjct: 178 YPEDSGAETDMNI 190
>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
gi|422325020|ref|ZP_16406057.1| ribonuclease PH [Rothia mucilaginosa M508]
gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
gi|353343729|gb|EHB88044.1| ribonuclease PH [Rothia mucilaginosa M508]
Length = 243
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR E+R + G A+GSA+ E GNT+V+ PR ++ + +
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGK----- 59
Query: 66 ALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M +T R + KG R+ EIS +I +++ A I + + I +
Sbjct: 60 GWVTAEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDC 119
Query: 122 QVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA P+ D V++ S G ++ TP+LD
Sbjct: 120 DVLQADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLD 179
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
L Y ED D+ V ++ K +Q A+ + ++ LA+EG +A R
Sbjct: 180 LPYTEDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQR 238
Query: 226 E 226
E
Sbjct: 239 E 239
>gi|389693872|ref|ZP_10181966.1| ribonuclease PH [Microvirga sp. WSM3557]
gi|388587258|gb|EIM27551.1| ribonuclease PH [Microvirga sp. WSM3557]
Length = 237
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 28/193 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R R P E+R + E G A+GS + GNTKVI GP ++ +
Sbjct: 1 MRPSNRAPDELRPVTLERGVARYAEGSCLVTFGNTKVICTASLEEKGPPWLRG-----TG 55
Query: 65 QALVRCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ V EYSM +T +R R KP G R+ EI +I +++ A + + QI
Sbjct: 56 RGWVTAEYSMLPRATHERTRREVNSGKPSG--RTQEIQRLIGRSLRAVVNLPAIGEKQIV 113
Query: 119 IFVQVLQADGGTRSACINAATLAL-------QDAGI----PMRDIVTSCSAGYLNSTPLL 167
+ V+QADGGTR+A I A +AL Q+ I P+R+ V + S G P+L
Sbjct: 114 VDCDVIQADGGTRTASITGAWVALHECFAWMQNRSIISINPLREPVAAISCGIYKGQPVL 173
Query: 168 DLNYVEDSAGGPD 180
DL+Y EDSA D
Sbjct: 174 DLDYAEDSAAETD 186
>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 245
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM A + GDR +R G R + EIS +I +++ A I + + I + VL
Sbjct: 62 AEYSMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTIVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 121 QADGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRY 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
ED D+ V + + +Q A+ ++ LA+ GC +A
Sbjct: 181 EEDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELA 232
>gi|339319687|ref|YP_004679382.1| ribonuclease PH [Candidatus Midichloria mitochondrii IricVA]
gi|338225812|gb|AEI88696.1| ribonuclease PH [Candidatus Midichloria mitochondrii IricVA]
Length = 240
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 20/241 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R E+R + G A+GS + + G T VI +V + + + Q V
Sbjct: 1 MRSYNRYYNELRPVEIIAGYNKHAEGSCLIKFGETTVICTASLDEKVP-QFLRNTGQGWV 59
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG R++ K K + R+ EI +I +++ A I ++ +I I V+
Sbjct: 60 AAEYGMLPRSTGSRIQREATKGKQEGRTQEIQRLIGRSLRAAIDLKILGERRIIIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL +A GI P++ + + S G +NS PLLDL+Y E
Sbjct: 120 QADGGTRTAAITGGYIALCEAIKTMIHSGIIKRSPLKTQIAAVSCGIINSKPLLDLDYNE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVRKF 230
DS D + +K+ +Q + F +++++A EG + + RE K
Sbjct: 180 DSKADIDANF-VFDGFNKLIEIQATGEKTSFNEEEFSELLKIAKEGTQKLLLKQRETLKI 238
Query: 231 L 231
+
Sbjct: 239 M 239
>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
Length = 257
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIQPQEGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ + E +++L K
Sbjct: 184 GILGEDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
marianensis DSM 12885]
gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
marianensis DSM 12885]
Length = 752
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA----AVYGPREVQNKSQQM 62
EG+R DGRRP E+R + E+G + +A GS +F+ G T+V+ G R++ + Q+
Sbjct: 318 EGIRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQI 377
Query: 63 SDQALVRCEYSMANFSTGD--RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ Y+ +STG+ +R P RR + + + + L I +
Sbjct: 378 EEFKRYMHHYNFPPYSTGEVAPLRAPS--RREIGHGALAERALVPVLPDELEFPYTIRLV 435
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSA 176
+VL ++G T A +TLAL DAG+P++ V + G + L D+ +ED
Sbjct: 436 SEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQGIEDHL 495
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
G D+ + T + VT +QMD K+ V++ A+E +A +I E
Sbjct: 496 G--DMDFKVAGTREGVTAIQMDIKI-AGVDRAVLETALEQARAGRLFILE 542
>gi|357413188|ref|YP_004924924.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
Length = 245
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
Length = 238
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
Length = 238
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
Length = 255
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 23/250 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR+P E+R++R + +GS + E G+TKV+ V +E + Q +
Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTV-SVQESVPPFLKGKGQGWI 59
Query: 69 RCEYSMANFSTGDR-MRKPKGDR---RSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQV 123
EYSM +T R +R+ R R+ EI +I + M + LT + R+ I V
Sbjct: 60 TAEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERT-FWIDCDV 118
Query: 124 LQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA I P++D V + S G ++ LLDLN+
Sbjct: 119 LQADGGTRTAAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178
Query: 173 EDSAGGPDVTVGILPT--LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR---EV 227
EDS D+ V + + ++ + + + ++ LA+ G + + R EV
Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQRSFFEV 238
Query: 228 RKFLLIAVDI 237
R L + ++
Sbjct: 239 RGGLWLRKNV 248
>gi|405110138|emb|CCM09438.1| cds17 [Streptomyces bottropensis]
gi|456384972|gb|EMF50550.1| ribonuclease [Streptomyces bottropensis ATCC 25435]
Length = 245
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM A + GDR +R G R + EIS +I +++ A I + + I + VL
Sbjct: 62 AEYSMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTIVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 121 QADGGTRTAAITGAYVALADAVSWAQGRKLVKAGRQPLTGTVSAVSVGIVGGVPLLDLRY 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
ED D+ V + + +Q A+ ++ LA+ GC +A
Sbjct: 181 EEDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELA 232
>gi|376260374|ref|YP_005147094.1| ribonuclease PH [Clostridium sp. BNL1100]
gi|373944368|gb|AEY65289.1| ribonuclease PH [Clostridium sp. BNL1100]
Length = 240
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + +
Sbjct: 2 LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWI 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I I V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I +AL DA +P+ V + S G +N LLDL Y+E
Sbjct: 121 QADGGTRTASITGGYVALVDACRTLVKNGMISKMPITGTVAATSVGIVNGEELLDLCYIE 180
Query: 174 DSAGGPDVTV 183
+S D+ V
Sbjct: 181 NSNAAVDMNV 190
>gi|357038916|ref|ZP_09100712.1| Ribonuclease PH [Desulfotomaculum gibsoniae DSM 7213]
gi|355359009|gb|EHG06773.1| Ribonuclease PH [Desulfotomaculum gibsoniae DSM 7213]
Length = 249
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR+ ++MR ++ A+GS + E+G+TKVI + + + +
Sbjct: 3 RVDGRKNSDMRSVKITRNINKHAEGSVLIEVGDTKVICTATVEERLPSWRKMEGKGGWLT 62
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STG RM + + + RS EI +I + + + + + + V+Q
Sbjct: 63 AEYGMLPRSTGQRMMRDAMRGRQNGRSLEIQRLIGRALRSVTDLQALGDYTVTLDCDVIQ 122
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA +P+RD+V + S G +N +LDL Y ED
Sbjct: 123 ADGGTRTASITGAFVALADAMHNLVLKGKLEKMPLRDLVAATSVGRVNGELVLDLCYSED 182
Query: 175 SAGGPDVTV 183
S D+ +
Sbjct: 183 STAEVDMNI 191
>gi|402851952|ref|ZP_10900071.1| Ribonuclease PH [Rhodovulum sp. PH10]
gi|402497779|gb|EJW09572.1| Ribonuclease PH [Rhodovulum sp. PH10]
Length = 238
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQA 66
+R R+P E+R + E G V A+GS + G+T V+ A + K Q +
Sbjct: 1 MRPSHRQPDELRAVSLERGVVKYAEGSCFVKCGDTHVLVTATLEDRLPPWLKGQ---GRG 57
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY M +T +R R+ K R+ EI +I +++ A + + QI +
Sbjct: 58 WVTAEYGMLPRATSERTRRESSAGKQSGRTVEIQRLIGRSLRAVVDLEALGERQITVDCD 117
Query: 123 VLQADGGTRSACINAATLALQD------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AA +AL D G P+RD V + S G N +LDL+
Sbjct: 118 VIQADGGTRTASITAAWVALHDCIAWMKARDMFRGGEPLRDHVAAVSCGVHNGVAVLDLD 177
Query: 171 YVEDSAGGPD 180
Y EDS+ D
Sbjct: 178 YAEDSSADTD 187
>gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1]
gi|403527765|ref|YP_006662652.1| ribonuclease PH [Arthrobacter sp. Rue61a]
gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1]
gi|403230192|gb|AFR29614.1| ribonuclease PH [Arthrobacter sp. Rue61a]
Length = 252
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 26/196 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R DGR P ++R + G +A+GSA+ E GNT+V+ PR ++ + +
Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGR---- 66
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ + I T + + I +
Sbjct: 67 -GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLD 125
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL +A P+ D + + S G ++ P+L
Sbjct: 126 CDVLQADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPML 185
Query: 168 DLNYVEDSAGGPDVTV 183
DL YVED D+ V
Sbjct: 186 DLPYVEDVRAETDMNV 201
>gi|408531589|emb|CCK29763.1| Ribonuclease PH [Streptomyces davawensis JCM 4913]
Length = 245
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+T+V V + ++ S + V
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTRVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR K K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAISWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
ED D+ V + + +Q A+ + ++ LA+ GC +A
Sbjct: 182 EDVRAETDMNV-VCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVSGCTELA 232
>gi|344999955|ref|YP_004802809.1| ribonuclease PH [Streptomyces sp. SirexAA-E]
gi|344315581|gb|AEN10269.1| ribonuclease PH [Streptomyces sp. SirexAA-E]
Length = 245
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + + + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105 =
JCM 12538]
gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105 =
JCM 12538]
Length = 263
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 18/194 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR ++R ++ G +GS + E GNT+V+ + V + ++ S V
Sbjct: 20 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVP-RWRRDSGLGWV 78
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T DR K K R+ EIS +I + + + + +QI I VL
Sbjct: 79 TAEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVL 138
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A + A +AL DA + D V++ S G +N TP+LDL Y
Sbjct: 139 QADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPY 198
Query: 172 VEDSAGGPDVTVGI 185
VEDS D+ V +
Sbjct: 199 VEDSQAMTDMNVAM 212
>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
Length = 238
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|387130282|ref|YP_006293172.1| Ribonuclease PH [Methylophaga sp. JAM7]
gi|386271571|gb|AFJ02485.1| Ribonuclease PH [Methylophaga sp. JAM7]
Length = 238
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R GR P ++R + A+GS + G+TKV+ ++ K + + +
Sbjct: 1 MRPSGRLPDQLRDITISRHYTKHAEGSVLIAFGDTKVLCTA----SIEEKIPPFLRGTGE 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M STG RM++ K R+ EI +I +++ A I + I I
Sbjct: 57 GWVTAEYGMLPRSTGSRMQREATRGKQGGRTMEIQRLIGRSLRAAIDLKALGERTITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +ALQDA P+ V S S G TP+LDL+
Sbjct: 117 DVIQADGGTRTASITGAFVALQDAIDYLIKNRKLKKSPLHGQVASVSVGIYEGTPVLDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS+ D+ V
Sbjct: 177 YPEDSSAETDMNV 189
>gi|410584535|ref|ZP_11321637.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
subterraneus DSM 13965]
gi|410504121|gb|EKP93633.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
subterraneus DSM 13965]
Length = 762
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA----AVYGPREVQNKSQQM 62
EG+R DGRRP E+R + E+G + +A GS +F+ G T+V+ G R++ + Q+
Sbjct: 321 EGIRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQI 380
Query: 63 SDQALVRCEYSMANFSTGD--RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ Y+ +STG+ +R P RR + + + + L I +
Sbjct: 381 EEFKRYMHHYNFPPYSTGEVAPLRAPS--RREIGHGALAERALVPVLPDELDFPYTIRLV 438
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSA 176
+VL ++G T A +TLAL DAG+P++ V + G + L D+ +ED
Sbjct: 439 SEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQGIEDHL 498
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
G D+ + T + VT +QMD K+ V++ A+E +A +I E
Sbjct: 499 G--DMDFKVAGTREGVTAIQMDIKI-AGVDRAVLETALEQARAGRLFILE 545
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 17/154 (11%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFS 78
MR++ + + K DGS G TKVI+AVYGP EV+ +++++D+A + C
Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVK-MNKEITDKATIIC-------- 51
Query: 79 TGDRMRKPK---GDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACI 135
+ KPK + + ++ +T E I+ L PRS I + +Q++ G S I
Sbjct: 52 ----ILKPKIGMSAVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLI 107
Query: 136 NAATLALQDAGIPMRD-IVTSCSAGYLNSTPLLD 168
NAA L+L AG+PMR+ IV+ C A N L+D
Sbjct: 108 NAACLSLVHAGLPMRNMIVSVCCAVTNNDEYLVD 141
>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
Length = 248
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 28/236 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R DGR+ E+R+++ G + A+GS + E G T+V+ A PR ++ + +
Sbjct: 1 MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGR---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
EY+M +T R K K R+ EIS +I +++ A + + + + +
Sbjct: 57 -GWATAEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA--------GIP-----MRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA IP ++D V + S G ++ TP+L
Sbjct: 116 CDVLQADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVL 175
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCKAVA 221
DL Y EDS D+ V + + V + P + E ++ LA GC +A
Sbjct: 176 DLPYEEDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELA 231
>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
Length = 244
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + + + VLQ
Sbjct: 62 SEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614]
gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614]
Length = 237
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R E+R + E G A+GS + + G+T V+ V + ++ V
Sbjct: 1 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVP-PWLRGQNRGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +TGDRMR+ K R+ EI +I +++ A + + +QI + V+
Sbjct: 60 TAEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL+D +G ++D + + S G TP+LDL+Y E
Sbjct: 120 QADGGTRTASITGAWVALRDCIEWMKARDMVSGEVLKDHIAAISCGIYEGTPVLDLDYAE 179
Query: 174 DSAGGPD 180
DS D
Sbjct: 180 DSTAETD 186
>gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
Length = 252
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 30/198 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI------AAVYGPREVQNKSQQM 62
+R DGR P ++R + G +A+GSA+ E GNT+V+ A V PR ++ + +
Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGV--PRWLKGEGR-- 66
Query: 63 SDQALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
V EY+M +T R K K R+ EIS +I +++ + I T + + I
Sbjct: 67 ---GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIV 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTP 165
+ VLQADGGTR+A I A +AL D+ P+ D + + S G ++ P
Sbjct: 124 LDCDVLQADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVP 183
Query: 166 LLDLNYVEDSAGGPDVTV 183
+LDL YVED D+ V
Sbjct: 184 MLDLPYVEDVRAETDMNV 201
>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|360036846|ref|YP_004938609.1| ribonuclease PH [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740100|ref|YP_005332069.1| ribonuclease PH [Vibrio cholerae IEC224]
gi|384423537|ref|YP_005632895.1| Ribonuclease PH [Vibrio cholerae LMA3984-4]
gi|417811284|ref|ZP_12457950.1| ribonuclease PH [Vibrio cholerae HC-49A2]
gi|417815038|ref|ZP_12461679.1| ribonuclease PH [Vibrio cholerae HCUF01]
gi|418330912|ref|ZP_12941872.1| ribonuclease PH [Vibrio cholerae HC-06A1]
gi|418335879|ref|ZP_12944782.1| ribonuclease PH [Vibrio cholerae HC-23A1]
gi|418342451|ref|ZP_12949263.1| ribonuclease PH [Vibrio cholerae HC-28A1]
gi|418347624|ref|ZP_12952362.1| ribonuclease PH [Vibrio cholerae HC-43A1]
gi|418353133|ref|ZP_12955860.1| ribonuclease PH [Vibrio cholerae HC-61A1]
gi|419824688|ref|ZP_14348198.1| ribonuclease PH [Vibrio cholerae CP1033(6)]
gi|419827894|ref|ZP_14351386.1| ribonuclease PH [Vibrio cholerae HC-1A2]
gi|419831554|ref|ZP_14355023.1| ribonuclease PH [Vibrio cholerae HC-61A2]
gi|419835156|ref|ZP_14358604.1| ribonuclease PH [Vibrio cholerae HC-46B1]
gi|421315532|ref|ZP_15766106.1| ribonuclease PH [Vibrio cholerae CP1032(5)]
gi|421319001|ref|ZP_15769563.1| ribonuclease PH [Vibrio cholerae CP1038(11)]
gi|421323039|ref|ZP_15773572.1| ribonuclease PH [Vibrio cholerae CP1041(14)]
gi|421326507|ref|ZP_15777026.1| ribonuclease PH [Vibrio cholerae CP1042(15)]
gi|421330439|ref|ZP_15780924.1| ribonuclease PH [Vibrio cholerae CP1046(19)]
gi|421334033|ref|ZP_15784506.1| ribonuclease PH [Vibrio cholerae CP1048(21)]
gi|421337938|ref|ZP_15788380.1| ribonuclease PH [Vibrio cholerae HC-20A2]
gi|421341886|ref|ZP_15792295.1| ribonuclease PH [Vibrio cholerae HC-43B1]
gi|421345364|ref|ZP_15795752.1| ribonuclease PH [Vibrio cholerae HC-46A1]
gi|422305615|ref|ZP_16392810.1| ribonuclease PH [Vibrio cholerae CP1035(8)]
gi|422890241|ref|ZP_16932681.1| ribonuclease PH [Vibrio cholerae HC-40A1]
gi|422901036|ref|ZP_16936430.1| ribonuclease PH [Vibrio cholerae HC-48A1]
gi|422905207|ref|ZP_16940076.1| ribonuclease PH [Vibrio cholerae HC-70A1]
gi|422911951|ref|ZP_16946489.1| ribonuclease PH [Vibrio cholerae HFU-02]
gi|422915928|ref|ZP_16950282.1| ribonuclease PH [Vibrio cholerae HC-02A1]
gi|422921451|ref|ZP_16954681.1| ribonuclease PH [Vibrio cholerae BJG-01]
gi|422924419|ref|ZP_16957476.1| ribonuclease PH [Vibrio cholerae HC-38A1]
gi|423143479|ref|ZP_17131105.1| ribonuclease PH [Vibrio cholerae HC-19A1]
gi|423148461|ref|ZP_17135831.1| ribonuclease PH [Vibrio cholerae HC-21A1]
gi|423152247|ref|ZP_17139469.1| ribonuclease PH [Vibrio cholerae HC-22A1]
gi|423155039|ref|ZP_17142182.1| ribonuclease PH [Vibrio cholerae HC-32A1]
gi|423158904|ref|ZP_17145882.1| ribonuclease PH [Vibrio cholerae HC-33A2]
gi|423163568|ref|ZP_17150375.1| ribonuclease PH [Vibrio cholerae HC-48B2]
gi|423729578|ref|ZP_17702911.1| ribonuclease PH [Vibrio cholerae HC-17A1]
gi|423733503|ref|ZP_17706733.1| ribonuclease PH [Vibrio cholerae HC-41B1]
gi|423745976|ref|ZP_17711099.1| ribonuclease PH [Vibrio cholerae HC-50A2]
gi|423810996|ref|ZP_17714875.1| ribonuclease PH [Vibrio cholerae HC-55C2]
gi|423846264|ref|ZP_17718648.1| ribonuclease PH [Vibrio cholerae HC-59A1]
gi|423878430|ref|ZP_17722278.1| ribonuclease PH [Vibrio cholerae HC-60A1]
gi|423890192|ref|ZP_17725128.1| ribonuclease PH [Vibrio cholerae HC-62A1]
gi|423924728|ref|ZP_17729741.1| ribonuclease PH [Vibrio cholerae HC-77A1]
gi|423996337|ref|ZP_17739614.1| ribonuclease PH [Vibrio cholerae HC-02C1]
gi|424000752|ref|ZP_17743854.1| ribonuclease PH [Vibrio cholerae HC-17A2]
gi|424004913|ref|ZP_17747910.1| ribonuclease PH [Vibrio cholerae HC-37A1]
gi|424007799|ref|ZP_17750755.1| ribonuclease PH [Vibrio cholerae HC-44C1]
gi|424015043|ref|ZP_17754901.1| ribonuclease PH [Vibrio cholerae HC-55B2]
gi|424018153|ref|ZP_17757965.1| ribonuclease PH [Vibrio cholerae HC-59B1]
gi|424022710|ref|ZP_17762385.1| ribonuclease PH [Vibrio cholerae HC-62B1]
gi|424025728|ref|ZP_17765357.1| ribonuclease PH [Vibrio cholerae HC-69A1]
gi|424585102|ref|ZP_18024708.1| ribonuclease PH [Vibrio cholerae CP1030(3)]
gi|424589468|ref|ZP_18028925.1| ribonuclease PH [Vibrio cholerae CP1037(10)]
gi|424593730|ref|ZP_18033081.1| ribonuclease PH [Vibrio cholerae CP1040(13)]
gi|424597660|ref|ZP_18036871.1| ribonuclease PH [Vibrio Cholerae CP1044(17)]
gi|424600432|ref|ZP_18039600.1| ribonuclease PH [Vibrio cholerae CP1047(20)]
gi|424605340|ref|ZP_18044316.1| ribonuclease PH [Vibrio cholerae CP1050(23)]
gi|424609058|ref|ZP_18047929.1| ribonuclease PH [Vibrio cholerae HC-39A1]
gi|424611973|ref|ZP_18050792.1| ribonuclease PH [Vibrio cholerae HC-41A1]
gi|424615857|ref|ZP_18054561.1| ribonuclease PH [Vibrio cholerae HC-42A1]
gi|424620612|ref|ZP_18059149.1| ribonuclease PH [Vibrio cholerae HC-47A1]
gi|424623531|ref|ZP_18062017.1| ribonuclease PH [Vibrio cholerae HC-50A1]
gi|424628107|ref|ZP_18066426.1| ribonuclease PH [Vibrio cholerae HC-51A1]
gi|424632053|ref|ZP_18070183.1| ribonuclease PH [Vibrio cholerae HC-52A1]
gi|424635143|ref|ZP_18073175.1| ribonuclease PH [Vibrio cholerae HC-55A1]
gi|424638963|ref|ZP_18076870.1| ribonuclease PH [Vibrio cholerae HC-56A1]
gi|424643428|ref|ZP_18081195.1| ribonuclease PH [Vibrio cholerae HC-56A2]
gi|424647220|ref|ZP_18084908.1| ribonuclease PH [Vibrio cholerae HC-57A1]
gi|424651356|ref|ZP_18088891.1| ribonuclease PH [Vibrio cholerae HC-57A2]
gi|424655309|ref|ZP_18092620.1| ribonuclease PH [Vibrio cholerae HC-81A2]
gi|429888133|ref|ZP_19369626.1| Ribonuclease PH [Vibrio cholerae PS15]
gi|440712143|ref|ZP_20892768.1| ribonuclease PH [Vibrio cholerae 4260B]
gi|443502260|ref|ZP_21069262.1| ribonuclease PH [Vibrio cholerae HC-64A1]
gi|443506160|ref|ZP_21072968.1| ribonuclease PH [Vibrio cholerae HC-65A1]
gi|443509998|ref|ZP_21076681.1| ribonuclease PH [Vibrio cholerae HC-67A1]
gi|443513840|ref|ZP_21080394.1| ribonuclease PH [Vibrio cholerae HC-68A1]
gi|443517644|ref|ZP_21084079.1| ribonuclease PH [Vibrio cholerae HC-71A1]
gi|443522233|ref|ZP_21088492.1| ribonuclease PH [Vibrio cholerae HC-72A2]
gi|443526090|ref|ZP_21092192.1| ribonuclease PH [Vibrio cholerae HC-78A1]
gi|443529165|ref|ZP_21095186.1| ribonuclease PH [Vibrio cholerae HC-7A1]
gi|443533903|ref|ZP_21099835.1| ribonuclease PH [Vibrio cholerae HC-80A1]
gi|443540095|ref|ZP_21105946.1| ribonuclease PH [Vibrio cholerae HC-81A1]
gi|449054592|ref|ZP_21733260.1| Ribonuclease PH [Vibrio cholerae O1 str. Inaba G4222]
gi|21759419|sp|Q9KVD6.2|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3984-4]
gi|340045427|gb|EGR06370.1| ribonuclease PH [Vibrio cholerae HCUF01]
gi|340045984|gb|EGR06920.1| ribonuclease PH [Vibrio cholerae HC-49A2]
gi|341626496|gb|EGS51885.1| ribonuclease PH [Vibrio cholerae HC-70A1]
gi|341628188|gb|EGS53463.1| ribonuclease PH [Vibrio cholerae HC-48A1]
gi|341628493|gb|EGS53739.1| ribonuclease PH [Vibrio cholerae HC-40A1]
gi|341641625|gb|EGS66150.1| ribonuclease PH [Vibrio cholerae HC-02A1]
gi|341641819|gb|EGS66338.1| ribonuclease PH [Vibrio cholerae HFU-02]
gi|341648900|gb|EGS72915.1| ribonuclease PH [Vibrio cholerae BJG-01]
gi|341649103|gb|EGS73104.1| ribonuclease PH [Vibrio cholerae HC-38A1]
gi|356422727|gb|EHH76198.1| ribonuclease PH [Vibrio cholerae HC-06A1]
gi|356423445|gb|EHH76896.1| ribonuclease PH [Vibrio cholerae HC-21A1]
gi|356427556|gb|EHH80804.1| ribonuclease PH [Vibrio cholerae HC-19A1]
gi|356434261|gb|EHH87442.1| ribonuclease PH [Vibrio cholerae HC-23A1]
gi|356435792|gb|EHH88941.1| ribonuclease PH [Vibrio cholerae HC-22A1]
gi|356438571|gb|EHH91586.1| ribonuclease PH [Vibrio cholerae HC-28A1]
gi|356444298|gb|EHH97109.1| ribonuclease PH [Vibrio cholerae HC-32A1]
gi|356448345|gb|EHI01117.1| ribonuclease PH [Vibrio cholerae HC-43A1]
gi|356451154|gb|EHI03856.1| ribonuclease PH [Vibrio cholerae HC-33A2]
gi|356455326|gb|EHI07969.1| ribonuclease PH [Vibrio cholerae HC-61A1]
gi|356456765|gb|EHI09350.1| ribonuclease PH [Vibrio cholerae HC-48B2]
gi|356648000|gb|AET28055.1| ribonuclease PH [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793610|gb|AFC57081.1| ribonuclease PH [Vibrio cholerae IEC224]
gi|395923021|gb|EJH33834.1| ribonuclease PH [Vibrio cholerae CP1032(5)]
gi|395924359|gb|EJH35162.1| ribonuclease PH [Vibrio cholerae CP1041(14)]
gi|395926277|gb|EJH37065.1| ribonuclease PH [Vibrio cholerae CP1038(11)]
gi|395934838|gb|EJH45575.1| ribonuclease PH [Vibrio cholerae CP1042(15)]
gi|395936126|gb|EJH46855.1| ribonuclease PH [Vibrio cholerae CP1046(19)]
gi|395938096|gb|EJH48794.1| ribonuclease PH [Vibrio cholerae CP1048(21)]
gi|395947063|gb|EJH57721.1| ribonuclease PH [Vibrio cholerae HC-43B1]
gi|395947112|gb|EJH57769.1| ribonuclease PH [Vibrio cholerae HC-20A2]
gi|395948734|gb|EJH59372.1| ribonuclease PH [Vibrio cholerae HC-46A1]
gi|395964765|gb|EJH74962.1| ribonuclease PH [Vibrio cholerae HC-56A2]
gi|395964975|gb|EJH75163.1| ribonuclease PH [Vibrio cholerae HC-57A2]
gi|395967735|gb|EJH77785.1| ribonuclease PH [Vibrio cholerae HC-42A1]
gi|395976632|gb|EJH86075.1| ribonuclease PH [Vibrio cholerae HC-47A1]
gi|395979417|gb|EJH88768.1| ribonuclease PH [Vibrio cholerae CP1030(3)]
gi|395980006|gb|EJH89315.1| ribonuclease PH [Vibrio cholerae CP1047(20)]
gi|408011196|gb|EKG49026.1| ribonuclease PH [Vibrio cholerae HC-39A1]
gi|408017275|gb|EKG54790.1| ribonuclease PH [Vibrio cholerae HC-50A1]
gi|408018046|gb|EKG55516.1| ribonuclease PH [Vibrio cholerae HC-41A1]
gi|408022786|gb|EKG59979.1| ribonuclease PH [Vibrio cholerae HC-52A1]
gi|408028183|gb|EKG65094.1| ribonuclease PH [Vibrio cholerae HC-56A1]
gi|408028467|gb|EKG65358.1| ribonuclease PH [Vibrio cholerae HC-55A1]
gi|408037470|gb|EKG73865.1| ribonuclease PH [Vibrio cholerae CP1037(10)]
gi|408038262|gb|EKG74614.1| ribonuclease PH [Vibrio cholerae CP1040(13)]
gi|408038287|gb|EKG74638.1| ribonuclease PH [Vibrio cholerae HC-57A1]
gi|408045714|gb|EKG81520.1| ribonuclease PH [Vibrio Cholerae CP1044(17)]
gi|408047562|gb|EKG83175.1| ribonuclease PH [Vibrio cholerae CP1050(23)]
gi|408058122|gb|EKG92942.1| ribonuclease PH [Vibrio cholerae HC-81A2]
gi|408059856|gb|EKG94597.1| ribonuclease PH [Vibrio cholerae HC-51A1]
gi|408612342|gb|EKK85685.1| ribonuclease PH [Vibrio cholerae CP1033(6)]
gi|408624258|gb|EKK97207.1| ribonuclease PH [Vibrio cholerae HC-1A2]
gi|408628402|gb|EKL01155.1| ribonuclease PH [Vibrio cholerae HC-17A1]
gi|408628417|gb|EKL01169.1| ribonuclease PH [Vibrio cholerae CP1035(8)]
gi|408632275|gb|EKL04740.1| ribonuclease PH [Vibrio cholerae HC-41B1]
gi|408637272|gb|EKL09341.1| ribonuclease PH [Vibrio cholerae HC-55C2]
gi|408644464|gb|EKL16149.1| ribonuclease PH [Vibrio cholerae HC-50A2]
gi|408644886|gb|EKL16559.1| ribonuclease PH [Vibrio cholerae HC-60A1]
gi|408646165|gb|EKL17786.1| ribonuclease PH [Vibrio cholerae HC-59A1]
gi|408652441|gb|EKL23656.1| ribonuclease PH [Vibrio cholerae HC-61A2]
gi|408659869|gb|EKL30902.1| ribonuclease PH [Vibrio cholerae HC-77A1]
gi|408660769|gb|EKL31771.1| ribonuclease PH [Vibrio cholerae HC-62A1]
gi|408850074|gb|EKL90060.1| ribonuclease PH [Vibrio cholerae HC-37A1]
gi|408850403|gb|EKL90367.1| ribonuclease PH [Vibrio cholerae HC-17A2]
gi|408855327|gb|EKL95034.1| ribonuclease PH [Vibrio cholerae HC-02C1]
gi|408859297|gb|EKL98958.1| ribonuclease PH [Vibrio cholerae HC-46B1]
gi|408862586|gb|EKM02093.1| ribonuclease PH [Vibrio cholerae HC-55B2]
gi|408867656|gb|EKM07012.1| ribonuclease PH [Vibrio cholerae HC-44C1]
gi|408871274|gb|EKM10517.1| ribonuclease PH [Vibrio cholerae HC-59B1]
gi|408875938|gb|EKM15075.1| ribonuclease PH [Vibrio cholerae HC-62B1]
gi|408882295|gb|EKM21135.1| ribonuclease PH [Vibrio cholerae HC-69A1]
gi|429224792|gb|EKY31110.1| Ribonuclease PH [Vibrio cholerae PS15]
gi|439972153|gb|ELP48450.1| ribonuclease PH [Vibrio cholerae 4260B]
gi|443433420|gb|ELS75928.1| ribonuclease PH [Vibrio cholerae HC-64A1]
gi|443437250|gb|ELS83349.1| ribonuclease PH [Vibrio cholerae HC-65A1]
gi|443441083|gb|ELS90753.1| ribonuclease PH [Vibrio cholerae HC-67A1]
gi|443444895|gb|ELS98154.1| ribonuclease PH [Vibrio cholerae HC-68A1]
gi|443448749|gb|ELT05366.1| ribonuclease PH [Vibrio cholerae HC-71A1]
gi|443451794|gb|ELT12039.1| ribonuclease PH [Vibrio cholerae HC-72A2]
gi|443455557|gb|ELT19322.1| ribonuclease PH [Vibrio cholerae HC-78A1]
gi|443460008|gb|ELT27398.1| ribonuclease PH [Vibrio cholerae HC-7A1]
gi|443462952|gb|ELT33971.1| ribonuclease PH [Vibrio cholerae HC-80A1]
gi|443464382|gb|ELT39045.1| ribonuclease PH [Vibrio cholerae HC-81A1]
gi|448265738|gb|EMB02971.1| Ribonuclease PH [Vibrio cholerae O1 str. Inaba G4222]
Length = 238
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
Length = 260
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 18/194 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR ++R ++ G +GS + E GNT+V+ + V + ++ S V
Sbjct: 17 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVP-RWRRDSGLGWV 75
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T DR K K R+ EIS +I + + + + +QI I VL
Sbjct: 76 TAEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVL 135
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A + A +AL DA + D V++ S G +N TP+LDL Y
Sbjct: 136 QADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPY 195
Query: 172 VEDSAGGPDVTVGI 185
VEDS D+ V +
Sbjct: 196 VEDSQAMTDMNVAM 209
>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
gi|422908743|ref|ZP_16943414.1| ribonuclease PH [Vibrio cholerae HE-09]
gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
gi|341638702|gb|EGS63341.1| ribonuclease PH [Vibrio cholerae HE-09]
Length = 238
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
gi|421739534|ref|ZP_16177840.1| ribonuclease PH [Streptomyces sp. SM8]
gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
gi|406692067|gb|EKC95782.1| ribonuclease PH [Streptomyces sp. SM8]
Length = 241
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 91/182 (50%), Gaps = 18/182 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R L E A+GS + G+TKV+ V + ++ S + V
Sbjct: 3 RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G + STPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYE 181
Query: 173 ED 174
ED
Sbjct: 182 ED 183
>gi|429194696|ref|ZP_19186777.1| tRNA nucleotidyltransferase [Streptomyces ipomoeae 91-03]
gi|428669619|gb|EKX68561.1| tRNA nucleotidyltransferase [Streptomyces ipomoeae 91-03]
Length = 245
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 32/237 (13%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQIRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFSTGDRMRKPKGDR---------RSTEISLVIRQTMEACILTHLMPRSQIDIF 120
EYSM ST R GDR R+ EIS +I +++ A I + + I +
Sbjct: 62 AEYSMLPRSTNTR-----GDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116
Query: 121 VQVLQADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA P+ V++ S G + PLL
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVAWAQRKKLVKANRQPLTGTVSAVSVGIVGGVPLL 176
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
DL Y ED D+ V + + +Q A+ + ++ LA+ GC +A
Sbjct: 177 DLCYEEDVKAETDMNV-VCTGDGRFVEVQGTAEAEPFAREELDALLDLAVSGCTELA 232
>gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
Length = 257
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 27/243 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R D R+P ++R ++ A+GS + E GNTKVI +++K + S Q
Sbjct: 1 MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTA----SIEDKVPPFLKGSGQ 56
Query: 66 ALVRCEYSMANFSTGDR-MRK-----PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ EYSM ++ R +R+ P G R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYSMIPRASETRSLREVVRGSPSG--RTHEIQRLIGRSLRAAVDLKKLGERTIWI 114
Query: 120 FVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR A I A +A+ DA I P++D V + S G +N+ +LD
Sbjct: 115 DCDVIQADGGTRVASITGAFIAVADALIKLEKNNLVKSNPLKDYVAAISVGKVNNEIVLD 174
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVR 228
LNY EDS D+ + ++ + L + T T++++ ++ G + I+ +
Sbjct: 175 LNYQEDSKAQVDMNI-VMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQK 233
Query: 229 KFL 231
+F+
Sbjct: 234 EFI 236
>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
gi|61216038|sp|Q82D17.1|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
Length = 244
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
ED D+ V + + +Q A+ ++ LA+ GC +A
Sbjct: 182 EDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELA 232
>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
gi|166228302|sp|A4Y0L7.1|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
Length = 239
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R ++ K R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|385330041|ref|YP_005883992.1| ribonuclease PH [Marinobacter adhaerens HP15]
gi|311693191|gb|ADP96064.1| ribonuclease PH [Marinobacter adhaerens HP15]
Length = 238
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR P + R +R A+GS + E G+TKVI V+NK +
Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTA----SVENKVPPFLRGEGK 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I +AL DA P++ +V + S G TP++DL+
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVADKRLKKSPLKQMVAALSVGVYKGTPVVDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YPEDSEAETDMNV 189
>gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
Length = 244
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 24/199 (12%)
Query: 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKS 59
+S +RL R ++R++ A+GS + G+TKVI A+V P +++K
Sbjct: 1 MSVNSMRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKG 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRK--PKGDR--RSTEISLVIRQTMEACILTHLMPRS 115
Q V EY M ST +RM++ KG + R+ EI +I +++ A + M +
Sbjct: 61 Q-----GWVTAEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGEN 115
Query: 116 QIDIFVQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNST 164
I I V+QADGGTR+A I +AL D A P + V S S G +N
Sbjct: 116 TITIDCDVIQADGGTRTAAITGGCVALHDALQYLTEKKQLATNPFQQFVASVSVGIINGE 175
Query: 165 PLLDLNYVEDSAGGPDVTV 183
P+LDL+Y EDS D+ V
Sbjct: 176 PMLDLDYQEDSNADTDMNV 194
>gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
L2-32]
gi|154084500|gb|EDN83545.1| tRNA nucleotidyltransferase [Bifidobacterium adolescentis L2-32]
Length = 254
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR+ E+R +R +GS + E GNT+V+ V + ++ S V
Sbjct: 14 VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTAGVP-RWRKDSGLGWV 72
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T DR + K R+ EIS +I + + + + +Q+ I VL
Sbjct: 73 TAEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVL 132
Query: 125 QADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL D A ++D V++ S G +N P+LDL Y
Sbjct: 133 QADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPY 192
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE 207
+EDS D+ V + + D + + P N E
Sbjct: 193 IEDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAE 228
>gi|448746041|ref|ZP_21727711.1| Ribonuclease phosphorolytic, bacterial-type [Halomonas titanicae
BH1]
gi|445566769|gb|ELY22875.1| Ribonuclease phosphorolytic, bacterial-type [Halomonas titanicae
BH1]
Length = 312
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 32/250 (12%)
Query: 3 FVS----PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PRE 54
FVS P+ +R GR ++R++R A+GS + E G+TKV+ A+V PR
Sbjct: 63 FVSSAKRPDVVRPSGREADQLREIRLTRDYTRHAEGSVLVEFGDTKVLCNASVEAGVPRW 122
Query: 55 VQNKSQQMSDQALVRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTH 110
++ K +Q V EY M + +G + K R+ EI +I +++ A +
Sbjct: 123 LRGK-----NQGWVTAEYGMLPRATHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVNLK 177
Query: 111 LMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAG 159
+ I + V+QADGGTR+A I +AL DA G P + +V++ S G
Sbjct: 178 KLGEFTITVDCDVIQADGGTRTAAITGGCVALIDAIRYLQREKKIKGDPFKQLVSAISVG 237
Query: 160 YLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNT---FEDVMQLAIEG 216
P+LDL+Y EDS D+ V ++ ++ +Q A+ T D++ LA +
Sbjct: 238 IYKGVPVLDLDYPEDSKADTDLNV-VMTESGELIEVQGTAEAGAFTRAELNDMLDLAEKA 296
Query: 217 CKAVANYIRE 226
A+ ++ RE
Sbjct: 297 GDALRDHQRE 306
>gi|383934703|ref|ZP_09988143.1| ribonuclease PH [Rheinheimera nanhaiensis E407-8]
gi|383704238|dbj|GAB58234.1| ribonuclease PH [Rheinheimera nanhaiensis E407-8]
Length = 237
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 25/242 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R GR +++R L A A+GS + E GNTKVI + + G PR ++ + +
Sbjct: 1 MRPSGRTASQIRPLTFTRQFTAHAEGSVLVEFGNTKVICTASVIEGVPRFMKGQGK---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M A + DR + K R+ EI +I + + + L+ + I I
Sbjct: 57 -GWVTAEYGMLPRATHTRNDREAARGKQGGRTMEIQRLIGRALRTAVDLKLLGENTITID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P+ +V + S G T + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNFMRAKGMIKTNPLNFMVAAVSVGIYKGTAVADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+Y EDS D+ + ++ KV +Q A+ +FE++ Q+ G A+ I E ++
Sbjct: 176 DYAEDSNAETDMNI-VMTETGKVIEIQGTAEEAPFSFEEMQQMLDLGKHAIREIIDEQKR 234
Query: 230 FL 231
L
Sbjct: 235 VL 236
>gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46]
gi|226736918|sp|B0UP55.1|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46]
Length = 237
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 28/193 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R R P E+R++ E G A+GS + G TKV+ GP ++ S
Sbjct: 1 MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASLEERGPPWLRG-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ V EY+M +T +R R KP G R+ EI +I +++ A + + QI
Sbjct: 56 KGWVTAEYAMLPRATHERNRREVTAGKPSG--RTQEIQRLIGRSLRAVVNLPAIGERQIV 113
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLL 167
+ VLQADGGTR+A I A +AL + PMRD V + S G P+L
Sbjct: 114 VDCDVLQADGGTRTASITGAWVALHECFTWMRGRSIISVDPMRDHVAAISCGIHKGIPIL 173
Query: 168 DLNYVEDSAGGPD 180
DL+Y EDSA D
Sbjct: 174 DLDYDEDSAADTD 186
>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR+ E+R ++ A GS + EMG TKVI V + + S + V
Sbjct: 3 RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKN-SGKGWVT 61
Query: 70 CEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST R + K + R+ EI +I + + + I + I I V+Q
Sbjct: 62 AEYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL +A IP+++ V++ S G +N P+LDL Y ED
Sbjct: 122 ADGGTRTASITGAFIALVEAINSVKEAKKITYIPIKNYVSAISVGIVNDQPVLDLCYEED 181
Query: 175 SAGGPDVTV 183
S D+ +
Sbjct: 182 SKAMVDMNI 190
>gi|443473936|ref|ZP_21063957.1| Ribonuclease PH [Pseudomonas pseudoalcaligenes KF707]
gi|442904871|gb|ELS29786.1| Ribonuclease PH [Pseudomonas pseudoalcaligenes KF707]
Length = 239
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI A+V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTASVEAGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R ++ K R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTVYLDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVLKKRGALKGEPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|410624128|ref|ZP_11334936.1| ribonuclease PH [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156468|dbj|GAC30310.1| ribonuclease PH [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 237
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R GR +++R + A+GS + E GNTKV+ + V G PR ++ + +
Sbjct: 1 MRPSGRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVVEGVPRFMKGQGK---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EYSM A + DR + K R+ EI +I +++ A + L+ + I +
Sbjct: 57 -GWITAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI PM+ ++ + S G +P+ DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALTWMRAKGILKANPMKHMIAAVSVGIYKGSPIADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y+EDSA D+ V ++ K+ +Q A+ +F+++ ++
Sbjct: 176 EYLEDSAAETDMNV-VMTDTGKLIEVQGTAEAEPFSFDEMNEM 217
>gi|424658108|ref|ZP_18095376.1| ribonuclease PH [Vibrio cholerae HE-16]
gi|408056676|gb|EKG91552.1| ribonuclease PH [Vibrio cholerae HE-16]
Length = 238
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1]
gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1]
Length = 243
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 18/190 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R GR+ ++R++R A+GS + E G+TKVI V + Q +
Sbjct: 7 RPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRG-QGWLT 65
Query: 70 CEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQVL 124
EY M A + DR + K R+ EI +I + + A + L HL PR+ I I V+
Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRT-IHIDCDVI 124
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +A+QDA P+ D V + S G TPLLDL+Y E
Sbjct: 125 QADGGTRTASITGAFVAVQDAVAKLVADGKLPRSPISDSVAAISVGVYQGTPLLDLDYAE 184
Query: 174 DSAGGPDVTV 183
DS D+ V
Sbjct: 185 DSRCDTDMNV 194
>gi|358450348|ref|ZP_09160812.1| ribonuclease PH [Marinobacter manganoxydans MnI7-9]
gi|357225466|gb|EHJ03967.1| ribonuclease PH [Marinobacter manganoxydans MnI7-9]
Length = 238
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR P + R +R A+GS + E G+TKVI V+NK +
Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTA----SVENKVPPFLRGEGK 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I +AL DA P++ +V + S G TP++DL+
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVADKRLKKSPLKQMVAALSVGVYKGTPVVDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YPEDSEAETDMNV 189
>gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT]
gi|122399230|sp|Q1GXA4.1|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT]
Length = 238
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R R P ++R++ A+GS + + G+T V+ V++K + +Q
Sbjct: 1 MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTA----SVEDKVPPFLRGRNQ 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
EY M STG RM + K R+ EI +I +++ A I + I +
Sbjct: 57 GWTTAEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-GI----------PMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P+RD V + S G TP+LDL+
Sbjct: 117 DVIQADGGTRTASITGAYVALHDAVGFMLANDMIQESPLRDAVAAISVGVYQGTPVLDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 177 YIEDSACDTDMNV 189
>gi|348031007|ref|YP_004873693.1| ribonuclease PH [Glaciecola nitratireducens FR1064]
gi|347948350|gb|AEP31700.1| ribonuclease PH [Glaciecola nitratireducens FR1064]
Length = 237
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R GR +++R + A+GS + E GNTKV+ V G PR ++ + +
Sbjct: 1 MRPSGRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNATVVEGVPRFMKGQGK---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM A + DR + K R+ EI +I +++ A + L+ + I +
Sbjct: 57 -GWVTAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI PM+ ++ + S G +P+ DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALTWMRAKGILKANPMKHMIAAVSVGIYKGSPIADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y+EDSA D+ V ++ K+ +Q A+ + E++ ++
Sbjct: 176 EYLEDSAADTDMNV-VMTETGKLIEVQGTAEAEPFSLEEMNEM 217
>gi|337287041|ref|YP_004626514.1| ribonuclease PH [Thermodesulfatator indicus DSM 15286]
gi|335359869|gb|AEH45550.1| ribonuclease PH [Thermodesulfatator indicus DSM 15286]
Length = 238
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 25/239 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGRRP E+R ++ + A+GS + E+G TKVI +V +V + + +
Sbjct: 1 MRKDGRRPDEIRPVKITPHYLKYAEGSVLMELGETKVICSVSVEEKVPPFLKD-TGMGWI 59
Query: 69 RCEYSMANFSTGDRMRKPK--GDR-RSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M ST R + G + RS EI +I +++ A + L+ + V+Q
Sbjct: 60 TAEYAMLPRSTHQRTPRESATGKKGRSYEIQRLIGRSLRAVVDLTLLGERTFWVDCDVMQ 119
Query: 126 ADGGTRSACINAATLAL--------------QDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171
ADGGTR+A I A +AL QD PM+ + + S G + LLDLNY
Sbjct: 120 ADGGTRTASITGAWVALALAFKKLLKEEVLTQD---PMKHQLAAISCGQVTGEVLLDLNY 176
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREV 227
EDS D ++ + +Q A+ TFE + LA++G +A ++V
Sbjct: 177 EEDSLAEIDANF-VMTAEGHIVEIQTTAEKEPFSWETFEKMKDLALKGINELAQIQQKV 234
>gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91]
gi|122314626|sp|Q0AJ79.1|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91]
Length = 242
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R + R +MR +R + A+GS + E G TKVI +V + + Q +
Sbjct: 3 RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASVIEKV-PPFLKGAGQGWLT 61
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STG+RM+ K K R+ EI +I + + + + + I I V+Q
Sbjct: 62 AEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA P++D V + S G L PLLDL+Y ED
Sbjct: 122 ADGGTRTASITGAFVALCDAVGYLRAEKIISENPIKDHVAAVSVGILKGQPLLDLDYAED 181
Query: 175 SAGGPDVTV 183
S+ D+ V
Sbjct: 182 SSCDTDLNV 190
>gi|452944051|ref|YP_007500216.1| ribonuclease PH [Hydrogenobaculum sp. HO]
gi|452882469|gb|AGG15173.1| ribonuclease PH [Hydrogenobaculum sp. HO]
Length = 255
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 28/234 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA----AVYGPREVQNKSQQMSD 64
+R + R+ E+R +R + A+GS + E GNT+VI A P ++ K +
Sbjct: 1 MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIADSVPPFLKGK-----N 55
Query: 65 QALVRCEYSMANFSTGDR-MRKP---KGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDI 119
Q + EYSM +T R MR+ K R+ EI +I + M A I LT + R+ I I
Sbjct: 56 QGWITAEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERT-IWI 114
Query: 120 FVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A + A +A+ DA +P+RD V + S G +N+ +LD
Sbjct: 115 DCDVIQADGGTRTASVVGAFIAMTDAIIKLNEQKLINSVPIRDTVGAVSVGIVNNQLMLD 174
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTL--LQMDAKLPTNTFEDVMQLAIEGCKAV 220
L++ EDS D+T+ + + V + L +A FE ++ L +E K +
Sbjct: 175 LDFEEDSNAAVDMTIVATGSGEIVEIHSLGEEATYTRKEFEAMLDLGLESLKQI 228
>gi|388255949|ref|ZP_10133130.1| ribonuclease PH [Cellvibrio sp. BR]
gi|387939649|gb|EIK46199.1| ribonuclease PH [Cellvibrio sp. BR]
Length = 240
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 23/231 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R GR P ++R +R A+GS + E G+TKVI A+V + Q Q
Sbjct: 3 RPSGRTPDQLRPVRITRHYTKHAEGSVLVEFGDTKVICTASVVNSVPPFLRGQ---GQGW 59
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
+ EY M STG RM + K R+ EI +I +++ A + + + I I V
Sbjct: 60 LTAEYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAVDLTALGENTIHIDCDV 119
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
+QADGGTR+A I A +AL DA G P++ + S S G P++DL+Y
Sbjct: 120 IQADGGTRTASITGAWVALADAINFLKAQGKVTGEPLKRGIASISVGIYQGVPVVDLDYP 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKL-PTNTFEDVMQLAIEGCKAVAN 222
EDS+ D+ + +L + +Q A+ P N E L++ G KA+A
Sbjct: 180 EDSSADTDMNL-VLGDDGGIIEIQGTAEAEPFNEAEFAAMLSL-GKKAIAE 228
>gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5]
gi|123735818|sp|Q13E56.1|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5]
Length = 237
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P E+R + E G V A+GS + + G+T V+ E + + V
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTAT-LEERLPPWLKGQGRGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T +R R+ K + R+ EI +I +++ A + + QI + VL
Sbjct: 60 TAEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVL 119
Query: 125 QADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL D G +RD V + S G N TP+LDL+Y E
Sbjct: 120 QADGGTRTASITGAWVALADCLGWMKTRNMIKGTVLRDNVAAISCGIYNGTPVLDLDYAE 179
Query: 174 DSAGGPD 180
DS D
Sbjct: 180 DSEAETD 186
>gi|339483135|ref|YP_004694921.1| Ribonuclease PH [Nitrosomonas sp. Is79A3]
gi|338805280|gb|AEJ01522.1| Ribonuclease PH [Nitrosomonas sp. Is79A3]
Length = 245
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYS 73
R P ++R +R ADGS + E G+TKVI +V + Q + EY
Sbjct: 7 RTPAQIRPVRITRHYTKHADGSILIECGDTKVICTASISEQVPPFLRGQG-QGWLTAEYG 65
Query: 74 MANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQVLQADG 128
M ST RM+ K K R+ EI +I + + A + L HL R+ I I V+QADG
Sbjct: 66 MLPCSTHSRMQREAAKGKQSGRTMEIQRLIGRALRAVVDLKHLGERT-IQIDCDVIQADG 124
Query: 129 GTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +AL DA P+ D V + S G P+LDL+Y+EDS+
Sbjct: 125 GTRTASITGAFVALHDAVEKLIYRQLIETTPIIDHVAAISVGIHQGIPVLDLDYIEDSSC 184
Query: 178 GPDVTV 183
D+ V
Sbjct: 185 DTDMNV 190
>gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
gi|61215900|sp|Q6AEK9.1|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 251
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 26/187 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R DGR ++R + E KA+GSA+ G T+V+ PR + K +
Sbjct: 5 IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGR---- 60
Query: 65 QALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M ST DRM + KG R+ EIS +I +++ A + + + I +
Sbjct: 61 -GWVTAEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLD 119
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA P+ D V++ S G ++ +P+L
Sbjct: 120 CDVLQADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPML 179
Query: 168 DLNYVED 174
DL Y ED
Sbjct: 180 DLAYTED 186
>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
Length = 246
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A + + + I + VLQ
Sbjct: 62 GEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRADTDMNV 192
>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
Length = 248
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 5 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 63
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A + + + I + VLQ
Sbjct: 64 GEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQ 123
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ TPLLDL Y
Sbjct: 124 ADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYE 183
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 184 EDVRADTDMNV 194
>gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist]
gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27]
gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27]
gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist]
Length = 256
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 24/232 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQA 66
LR + R E+R ++ G A+GSA+ GNT+V+ R V + Q+
Sbjct: 20 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQR---SG 76
Query: 67 LVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY+M S +R K K RS EIS +I ++M A + + + + I +
Sbjct: 77 WITAEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCD 136
Query: 123 VLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNY 171
VLQADGGTR+A I + +AL DA + P+ D V++ S G + LDL+Y
Sbjct: 137 VLQADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDY 196
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAV 220
EDS D+ + + K+ +Q A+ FE +M+LA GC+A+
Sbjct: 197 SEDSNAQADINL-VFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQAL 247
>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
gi|254808602|sp|B7VHJ7.1|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
Length = 238
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 26/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R + R ++R ++ A A+GS + E GNTKV+ A V PR ++ + +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + +M I +
Sbjct: 57 -GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A++A+ DA PM+ V + S G + + L DL
Sbjct: 116 CDVIQADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ + E++MQL K +A+ + E +K
Sbjct: 176 EYVEDSAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIV-EAQK 233
Query: 230 FLL 232
L
Sbjct: 234 AAL 236
>gi|61216045|sp|Q83FT1.2|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216046|sp|Q83HF6.2|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 247
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 24/232 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN--KSQQMSDQA 66
LR + R E+R ++ G A+GSA+ GNT+V+ R V + Q+
Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQR---SG 67
Query: 67 LVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY+M S +R K K RS EIS +I ++M A + + + + I +
Sbjct: 68 WITAEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCD 127
Query: 123 VLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNY 171
VLQADGGTR+A I + +AL DA + P+ D V++ S G + LDL+Y
Sbjct: 128 VLQADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDY 187
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAV 220
EDS D+ + + K+ +Q A+ FE +M+LA GC+A+
Sbjct: 188 SEDSNAQADINL-VFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQAL 238
>gi|409178641|gb|AFV25476.1| hypothetical protein [Streptomyces sp. BC16019]
Length = 245
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM A + GDR +R G R + EIS +I +++ A I + + I + VL
Sbjct: 62 AEYSMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTIVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 121 QADGGTRTAAITGAYVALADAVSWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCY 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVA 221
ED D+ V + + +Q A+ ++ LA+ GC +A
Sbjct: 181 EEDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELA 232
>gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2]
gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2]
Length = 246
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 16/236 (6%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR ++R++R E + A GS + E G+T+V+ A + ++ S V
Sbjct: 8 RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATIEDGLPGW-RRASRSGWVT 66
Query: 70 CEYSMANFSTGDRMRKPKGDRR--STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
EY+M STG R R+ G RR S EI +I +++ + + I V+QAD
Sbjct: 67 AEYAMLPASTGRRTRREFGQRRGRSQEIERLIGRSLRTATNLRALGEHTVTIDCDVIQAD 126
Query: 128 GGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA 176
GGTR+A + A +AL DA IP+ V + S G ++ LLDL+Y EDS
Sbjct: 127 GGTRTAALTGAWVALHDALAAWVEAARIPRIPLVSQVAAVSMGLVDGNVLLDLDYAEDSR 186
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTN--TFEDVMQLAIEGCKAVANYIREVRKF 230
D+ + + + V + + P + + ++ L EG + + EV F
Sbjct: 187 AEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEVTAF 242
>gi|388543938|ref|ZP_10147227.1| ribonuclease PH [Pseudomonas sp. M47T1]
gi|388277766|gb|EIK97339.1| ribonuclease PH [Pseudomonas sp. M47T1]
Length = 240
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M +TG+R + K K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRATGERNQREASKGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++++ S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKHMISAVSVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
>gi|418467571|ref|ZP_13038450.1| ribonuclease PH [Streptomyces coelicoflavus ZG0656]
gi|371551839|gb|EHN79108.1| ribonuclease PH [Streptomyces coelicoflavus ZG0656]
Length = 246
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGR P ++R + E G A+GS + G+TKV+ A+V E + ++ S +
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVT---EGVPRWRKGSGEGW 59
Query: 68 VRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M A + GDR K + R+ EIS +I +++ A I + + I + V
Sbjct: 60 VTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDV 119
Query: 124 LQADGGTRSACINAATLALQDAGI--------------PMRDIVTSCSAGYLNSTPLLDL 169
LQADGGTR+A I A +AL DA P+ V++ S G ++ TP+LDL
Sbjct: 120 LQADGGTRTAAITGAYVALADAVTWAQHTKRLIKPSRKPLTGTVSAVSVGIIDGTPMLDL 179
Query: 170 NYVEDSAGGPDVTV 183
Y ED D+ V
Sbjct: 180 PYEEDVRADTDMNV 193
>gi|418293992|ref|ZP_12905893.1| ribonuclease PH [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065376|gb|EHY78119.1| ribonuclease PH [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 240
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIENGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TGDR ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRATGDRNQREATRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +A+ DA G P++ ++ + S G P+LDL
Sbjct: 118 DVIQADGGTRTASITGAMVAVIDALKVLKKRGGLKSGDPIKQMIAAVSVGIYQGEPVLDL 177
Query: 170 NYVEDSAGGPDVTV 183
+Y+EDSA D+ V
Sbjct: 178 DYLEDSAAETDLNV 191
>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
gi|123634261|sp|Q48AN3.1|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
Length = 237
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA----VYGPREVQNKSQQMSD 64
+R GR ++R + A+GS + E G+TKVI V PR ++ + +
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RMR+ K R+ EIS +I + + A + + + I +
Sbjct: 57 -GWVTAEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA P++ ++ + S G P+ DL
Sbjct: 116 CDVIQADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYKGEPVADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+Y EDSA D+ V ++ K+ +Q A+ +FE+ MQ +E K N + +++K
Sbjct: 176 DYPEDSAADTDMNV-VMTDTGKLIEVQGTAEEEPFSFEE-MQAMLELAKNGINELFDLQK 233
Query: 230 FLL 232
L
Sbjct: 234 AAL 236
>gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|384196574|ref|YP_005582318.1| tRNA nucleotidyltransferase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|333109640|gb|AEF26656.1| tRNA nucleotidyltransferase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339478648|gb|ABE95102.1| Ribonuclease PH [Bifidobacterium breve UCC2003]
Length = 258
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 75
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 76 VTAEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLP 195
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 196 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 245
>gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1]
gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32]
gi|386312110|ref|YP_006008275.1| ribonuclease PH [Shewanella putrefaciens 200]
gi|166228319|sp|A4Y2K5.1|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|166228321|sp|A1RET8.1|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1]
gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32]
gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200]
Length = 237
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 29/238 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I + + AC+ + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYKGEAISDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
Y+EDSA D+ V ++ K+ +Q A+ T E++++L N IRE+
Sbjct: 176 EYIEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFTHEELIEL----LGLAKNSIREI 228
>gi|359778882|ref|ZP_09282140.1| ribonuclease PH [Arthrobacter globiformis NBRC 12137]
gi|359303847|dbj|GAB15969.1| ribonuclease PH [Arthrobacter globiformis NBRC 12137]
Length = 252
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 26/196 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R DGR P ++R + G +A+GSA+ E GNT+V+ PR ++ + +
Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGR---- 66
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ + I T + + I +
Sbjct: 67 -GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLD 125
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL +A P+ D + + S G ++ P+L
Sbjct: 126 CDVLQADGGTRTAAITGAYVALAEAIRFARENKMIARNAQPLIDTIAAVSVGIIDGIPML 185
Query: 168 DLNYVEDSAGGPDVTV 183
DL Y+ED D+ V
Sbjct: 186 DLPYIEDVRAETDMNV 201
>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
Length = 257
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 120/254 (47%), Gaps = 29/254 (11%)
Query: 2 EFVSP-EG---LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PR 53
E + P EG +R D R ++R ++ A A+GS + E GNTKV+ A++ PR
Sbjct: 9 ELIQPQEGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPR 68
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILT 109
++ + + V EY M +T R R+ K R+ EI +I +++ A +
Sbjct: 69 WLKGQGK-----GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDL 123
Query: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSA 158
M I + V+QADGGTR+A I A++AL DA PM+ V + S
Sbjct: 124 EAMGEIMITVDCDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSV 183
Query: 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
G L L DL YVEDSA D+ V ++ K+ +Q A+ E +++L K
Sbjct: 184 GILGGDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKK 242
Query: 219 AVANYIREVRKFLL 232
+A+ + + LL
Sbjct: 243 GIADIVAVQKASLL 256
>gi|417942031|ref|ZP_12585309.1| Ribonuclease PH (RNase PH) [Bifidobacterium breve CECT 7263]
gi|376167665|gb|EHS86496.1| Ribonuclease PH (RNase PH) [Bifidobacterium breve CECT 7263]
Length = 258
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI-AAVYGPREVQNKSQQMSDQAL 67
+R DGR+ E+R +R +GS + E GNT+V+ A + P + ++ S
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG--VPRWRKDSGLGW 75
Query: 68 VRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M +T +R + K R+ EIS +I + + I + +QI + V
Sbjct: 76 VTAEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 124 LQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A + A +AL D A ++D V++ S G +N TP+LDL
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKNHHIKSADKVLKDYVSAVSVGVINGTPMLDLP 195
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQLAIEGCK 218
Y+EDS D+ V + + + + P N E ++ LA +G K
Sbjct: 196 YIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNK 245
>gi|345015504|ref|YP_004817858.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
gi|344041853|gb|AEM87578.1| Ribonuclease PH [Streptomyces violaceusniger Tu 4113]
Length = 243
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 22/236 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+T+V+ V + ++ S + V
Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-GI------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA G P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYE 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
ED D+ V + + +Q A+ ++ LA+ GC+ +A R
Sbjct: 182 EDVRAETDMNV-VCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGIQR 236
>gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130]
gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130]
Length = 239
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 20/225 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R GR P EMR + E G A+GS + + G+T V+ V + + + V
Sbjct: 5 RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASLEERVP-PWLRGAGKGWVT 63
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STG RMR+ K R+ EI +I +++ A + + QI + V+Q
Sbjct: 64 AEYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQ 123
Query: 126 ADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL++ G + D V + S G TP+LDL+Y ED
Sbjct: 124 ADGGTRTASITGAYVALKECLDWMQARSMIGGDVLIDNVAAISCGIYEGTPVLDLDYDED 183
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
S D ++ + +Q A+ F +M LA +G
Sbjct: 184 SEADTDANF-VMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKG 227
>gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
NRL30031/H210]
gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
NRL30031/H210]
Length = 277
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 17/235 (7%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR +R ++ + ADGS + E GNTKVI V + +Q V EY
Sbjct: 43 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVP-PFLRGKEQGWVTAEY 101
Query: 73 SMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADG
Sbjct: 102 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 161
Query: 129 GTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +ALQ A G+ P+R+ V + SAG + PLLDL+Y EDS
Sbjct: 162 GTRTASITGAYVALQIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 221
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232
DV + I+ K+ +Q A+ + E++ +L K +A ++ + L
Sbjct: 222 DSDVNI-IMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAALF 275
>gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
gi|226736952|sp|A7IID4.1|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
Length = 237
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R EMR + E G + A+GS + + G+T V+ + E + + V
Sbjct: 1 MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSAT-LEERLPPWLKGQGRGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T DR R+ K R+ EI +I +++ + + QI + VL
Sbjct: 60 TAEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVL 119
Query: 125 QADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL D IP++D V + S G N TP+LDL+Y E
Sbjct: 120 QADGGTRTAAITGAWIALYDCLSWMRQRSMVKEIPLKDHVAAVSCGIYNGTPVLDLDYAE 179
Query: 174 DSAGGPD 180
DS D
Sbjct: 180 DSVAETD 186
>gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
Length = 248
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +P R DGR E+R + + A+GS + E G T+V+ A V + +
Sbjct: 1 MTTPTPAPARADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFTEGVP-RWR 59
Query: 61 QMSDQALVRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
+ S Q V EY+M A + GDR K K R+ EIS +I +++ A + T + +
Sbjct: 60 KGSGQGWVTAEYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENT 119
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDA-------GI------PMRDIVTSCSAGYLNS 163
I + VLQADGGTR+A + A +AL DA GI P+ V++ S G ++
Sbjct: 120 IVLDCDVLQADGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVVDG 179
Query: 164 TPLLDLNYVED 174
P+LDL YVED
Sbjct: 180 VPVLDLPYVED 190
>gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8]
gi|387812909|ref|YP_005428386.1| RNase PH [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|166228289|sp|A1TY30.1|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8]
gi|381337916|emb|CCG93963.1| RNase PH, Phosphorolytic exoribonuclease that removes nucleotide
residues following the-CCA terminus of tRNA and adds
nucleotides to the ends of RNA molecules by using
nucleoside diphosphates as substrates [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 238
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR P + R +R A+GS + E G+TKVI V+NK +
Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTA----SVENKVPPFLRGEGK 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG RM + K R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I +AL DA P++ +V + S G TP+ DL+
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVKEKRLKKSPLKQMVAAVSVGVYRGTPVADLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YPEDSEAETDMNV 189
>gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254808601|sp|B8GPB2.1|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 239
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R GR+P ++R++R A+GS + E G+T+V+ P ++NK
Sbjct: 1 MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGS---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST +RM + K R+ EI +I +++ A + + QI +
Sbjct: 57 -GWVTAEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I+ +AL DA P+ V S S G P+LDL
Sbjct: 116 CDVLQADGGTRTASISGGYVALHDAITHLMKQGKLKRNPLFGAVASVSVGIYQGVPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ V
Sbjct: 176 DYAEDSNAETDMNV 189
>gi|373253495|ref|ZP_09541613.1| tRNA nucleotidyltransferase [Nesterenkonia sp. F]
Length = 255
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 110/241 (45%), Gaps = 29/241 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
LR DGR P ++R++R G A+GS + E G T+V+ PR ++ +
Sbjct: 6 LRSDGRTPDQLREVRITRGWSTHAEGSVLIEFGETRVLCTASFEETVPRWLKGRGS---- 61
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +TG R K K R+ EIS ++ + + A + T + + I +
Sbjct: 62 -GWVTAEYAMLPRATGSRSPRESVKGKIGGRTHEISRLVGRALRAAVDTEALGENMITLD 120
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GIPMRDI------VTSCSAGYL-NSTPL 166
VLQADGGTR+A I A +AL DA G R V + S G L + TP+
Sbjct: 121 CDVLQADGGTRTAAITGAYVALADAIEWARRKGHVARSAKVLTSSVAAISVGILPDGTPV 180
Query: 167 LDLNYVEDSAGGPDVTVGILPTLDKVTL--LQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
LDL Y EDS D+ V D V + A + ++ LA++G + +
Sbjct: 181 LDLPYTEDSTAETDMNVVATGEGDFVEIQGTAEGAAFGRGELDRLLDLALQGTAELTEHQ 240
Query: 225 R 225
R
Sbjct: 241 R 241
>gi|399522941|ref|ZP_10763603.1| ribonuclease PH [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109310|emb|CCH40164.1| ribonuclease PH [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 239
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKV+ V PR ++ + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVVCTVSVESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R ++ K R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|421350051|ref|ZP_15800419.1| ribonuclease PH [Vibrio cholerae HE-25]
gi|395955158|gb|EJH65761.1| ribonuclease PH [Vibrio cholerae HE-25]
Length = 238
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
YVEDSA D+ V ++ K+ +Q A+ E +++L K +A+ + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQKA 234
Query: 230 FLL 232
LL
Sbjct: 235 SLL 237
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 19/145 (13%)
Query: 12 DGRRPTEMRQLRA---EIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
D RP + +LRA E G + KADGS+ F G+T+V+AA YGP EV+ ++++ D+A
Sbjct: 5 DNTRPLQTCELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVK-LNKELIDRA-- 61
Query: 69 RCEYSMANFSTGDRMRKPK-GDRRSTE--ISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
T + + +PK G +E + +IR + E +LT L PR+ + I VQV+Q
Sbjct: 62 ----------TLEVIFRPKIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQ 111
Query: 126 ADGGTRSACINAATLALQDAGIPMR 150
G S +NAA LA+ DAG PMR
Sbjct: 112 NSGSLLSCAVNAACLAMMDAGFPMR 136
>gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222]
gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222]
Length = 241
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R GR ++MR + E G + A+GS + G+T+V+ + ++ K+ + S Q
Sbjct: 2 MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSA----SIEEKAPPFLKGSGQ 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M +T R R+ K R+ EI +I + + A + + QI +
Sbjct: 58 GWVTAEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDC 117
Query: 122 QVLQADGGTRSACINAATLALQ-------DAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR A I +AL+ AGI P+ D V + S G P+LDL+
Sbjct: 118 DVIQADGGTRCAAITGGWVALRLAMNKLLKAGIVTADPIMDHVAAVSCGIYAGQPILDLD 177
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y EDS G D I+ ++ +QM A+ T + ++ QL
Sbjct: 178 YAEDSEAGTDGNF-IMTGAGRLIEVQMSAEGATFSRPEMNQL 218
>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
Length = 241
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 105/231 (45%), Gaps = 28/231 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R DGR ++R + E G A A+GSA+ G TKV+ PR + K +
Sbjct: 3 RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGVPRWLTGKGK----- 57
Query: 66 ALVRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY+M A S DR K K R+ EIS +I + + A + T + + I I
Sbjct: 58 GWVTAEYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMR-------------DIVTSCSAGYLNSTPLLD 168
VLQADGGTR+A I A +AL DA R D V++ S G ++ P+LD
Sbjct: 118 DVLQADGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLD 177
Query: 169 LNYVEDSAGGPDVTVGILPT--LDKVTLLQMDAKLPTNTFEDVMQLAIEGC 217
L YVED D+ V + +V A + ++ LA+ GC
Sbjct: 178 LAYVEDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGC 228
>gi|222151113|ref|YP_002560267.1| polynucleotide phosphorylase/polyadenylase [Macrococcus
caseolyticus JCSC5402]
gi|254782726|sp|B9EBG0.1|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
JCSC5402]
Length = 703
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 16/234 (6%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA----AVYGPREVQNK 58
++ E +R DGRRP E+R L +E+G + + GS +F G T+ ++ G ++ +
Sbjct: 308 LITEEKVRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGEHQIID- 366
Query: 59 SQQMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
+ ++ Y+ NFS G+ +R P G R +L R ++ P +
Sbjct: 367 GLGVEEEKRYMHHYNFPNFSVGETGPIRAP-GRREIGHGALGERALLQVIPDEKEFPYT- 424
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDLNYV 172
I + +VL+++G + A I +TLAL DAG+P++ V + G + N T L D+ +
Sbjct: 425 IRVVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSDIQGM 484
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
ED+ G D+ + T + +T +QMD K+ T ED+++ A+E + +I E
Sbjct: 485 EDALG--DMDFKVAGTKEGITAIQMDIKINGLT-EDILREALEQARVGRLHIME 535
>gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C]
gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C]
Length = 244
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 SEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|399543589|ref|YP_006556897.1| ribonuclease PH [Marinobacter sp. BSs20148]
gi|399158921|gb|AFP29484.1| Ribonuclease PH [Marinobacter sp. BSs20148]
Length = 238
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 88/193 (45%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR P + R +R A+GS + E G+TKVI V+NK Q
Sbjct: 1 MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTA----SVENKVPPFLRGEGQ 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM + K R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I +AL DA P++ +V + S G P++DL+
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNFLVAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YPEDSVAETDMNV 189
>gi|386817119|ref|ZP_10104337.1| RNAse PH [Thiothrix nivea DSM 5205]
gi|386421695|gb|EIJ35530.1| RNAse PH [Thiothrix nivea DSM 5205]
Length = 238
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R R P +MR ++ A+GS + E GNTKV+ A V P ++ K Q
Sbjct: 1 MRPSERAPDQMRTIKFTRNYTCHAEGSVLVEFGNTKVLCTATVEDRLPGWLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M STG R + K R+ EI +I +++ A + + QI +
Sbjct: 57 -GWVTAEYGMLPRSTGSRTAREASRGKQGGRTMEIQRLIGRSLRAIVDLEALGEFQITLD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ + +AL DA P+ + S S G N P+LDL
Sbjct: 116 CDVIQADGGTRTASISGSYVALCDAITWLQKNRRLKKNPLHGQIASVSVGIFNGVPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS+ D+ V
Sbjct: 176 DYAEDSSAETDMNV 189
>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
gi|259494117|sp|C1DI48.1|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
Length = 239
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR P ++R +R A+GS + E G+T+VI V PR ++ + +
Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGK----- 57
Query: 66 ALVRCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+RM R+ R R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 178 YPEDSDAETDLNV 190
>gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
Length = 242
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR+ EMR +R A+GS + E G+T+V+ A + P ++NK +
Sbjct: 1 MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGR---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM ST DRM + K R+ EI +I +++ A + + QI +
Sbjct: 57 -GWVTAEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A +AL+DA G+ P+ + + S G N P+LDL
Sbjct: 116 CDVIQADGGTRTASISGAYVALRDAIRKAREQGMIRKDPLHGHLAAISVGIFNGAPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ +
Sbjct: 176 DYDEDSQAETDLNL 189
>gi|423349762|ref|ZP_17327417.1| ribonuclease PH [Scardovia wiggsiae F0424]
gi|393702254|gb|EJD64460.1| ribonuclease PH [Scardovia wiggsiae F0424]
Length = 278
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R ++ G +GS + E GNT+V+ + V + ++ S V
Sbjct: 17 VRADGRAVDELRPVKVIRGWTQSPEGSVLIECGNTRVLCTATFTQGVP-RWRRDSGLGWV 75
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T DR K K R+ EIS +I + + + +QI I VL
Sbjct: 76 TAEYAMIPRATQDRTDRESVKGKVGGRTHEISRLIGRVLRGVTDLSKLGENQIQIDCDVL 135
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A + A +AL DA ++D V++ S G +N TP+LDL Y
Sbjct: 136 QADGGTRTASVTGAYIALADALEWAKGKKKIKSVKAVLKDQVSAVSVGIINGTPMLDLPY 195
Query: 172 VEDSAGGPDVTVGI 185
EDS D+ + +
Sbjct: 196 TEDSQAMTDMNIAM 209
>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
Length = 229
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 25/233 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R D R ++R ++ A A+GS + E GNTKV+ A++ PR ++ + +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + M I +
Sbjct: 57 -GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
YVEDSA D+ V ++ K+ +Q A+ + E +++L K +A+
Sbjct: 176 EYVEDSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIAD 227
>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
Length = 270
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 24/243 (9%)
Query: 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ-QMSD 64
P R D R ++R + E G A S + G TKVI AV +V + Q +
Sbjct: 8 PRMERQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVE 67
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EYSM +ST DR R+ K D RS+EI +I +++ A + + + I +
Sbjct: 68 GGWLTAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVD 127
Query: 121 VQVLQADGGTRSACINAATLAL-----------QDAGIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I A++AL + A PM+ +V++ S G L LLDL
Sbjct: 128 CDVLQADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDL 187
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQM-----DAKLPTNTFEDVMQLAIEGCKAVANYI 224
YVED D+ L D+ +++ +A + +++L +G + +A
Sbjct: 188 CYVEDKDAEVDMN---LVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQ 244
Query: 225 REV 227
R+V
Sbjct: 245 RQV 247
>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
Length = 238
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R + R+ ++R ++ A A+GS + E GNTKV+ A V PR ++ + +
Sbjct: 1 MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RMR+ K R+ EI +I +++ A + M + +
Sbjct: 57 -GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A++A+ DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASISGASVAMADAFQHLIENGKLKKNPMKGHVAAVSVGILGEDVLCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
YVEDSA D+ V ++ ++ +Q A+ T ++M+L K + +
Sbjct: 176 EYVEDSAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIV 229
>gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
Length = 236
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 24/222 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R GR +MR + E G A+GS + +MG+T V+ ++++ + +
Sbjct: 1 MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTA----SIEDRPPPFLRNTGL 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M STG RMR+ K R+ EI +I +++ A + + QI +
Sbjct: 57 GWVTAEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
VLQADGGTR A I +AL+ A P+ D V++ S G P+LDL+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMQAGDVTSDPLGDPVSAVSCGIYAGQPVLDLD 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
Y EDS G D + T ++ +QM A+ T + +++ QL
Sbjct: 177 YPEDSVAGVDGN--FVMTGGRMIEVQMSAEGATFSRDELEQL 216
>gi|398811124|ref|ZP_10569930.1| ribonuclease PH [Variovorax sp. CF313]
gi|398081497|gb|EJL72274.1| ribonuclease PH [Variovorax sp. CF313]
Length = 243
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R GR ++R +R G A+GS + E G T+V+ +V ++ S + V
Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEEKVP-PHKKGSGEGWVT 64
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M +T R K K R+ EI +I ++M A ++ I + VLQ
Sbjct: 65 AEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAVLGERTIHLDCDVLQ 124
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +A QDA P++ V + S G + TPLLDL Y ED
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVSKLVASGAIEASPIKGHVAAISVGIVGGTPLLDLEYTED 184
Query: 175 SAGGPDVTV 183
SA D+ V
Sbjct: 185 SACDTDMNV 193
>gi|379006482|ref|YP_005255933.1| RNAse PH [Sulfobacillus acidophilus DSM 10332]
gi|361052744|gb|AEW04261.1| RNAse PH [Sulfobacillus acidophilus DSM 10332]
Length = 246
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 18/202 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR ++R LR E+G A A+GS + +G T+V+ +V + + Q +
Sbjct: 2 VRADGRDALDIRPLRLELGFNAWAEGSCLITVGRTQVLVTATVEEKVP-PFMRGTGQGWI 60
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQV 123
+ EY+M +T +R + + RS EI +I + + + L+ L RS I + V
Sbjct: 61 QAEYAMLPRATQERTHREAVRGRQQGRSVEIQRLIGRALRGALDLSRLGERSVI-LDCDV 119
Query: 124 LQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL A + P++ + + S G N PL+DL Y
Sbjct: 120 LQADGGTRTAAITAGFMALWQALLSIHRKSPFHAPPLKGRLAAVSVGLQNGQPLVDLTYA 179
Query: 173 EDSAGGPDVTVGILPTLDKVTL 194
EDS G D + L T D V +
Sbjct: 180 EDSVIGADFNLVRLSTGDWVEI 201
>gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b]
gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b]
Length = 237
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 30/195 (15%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R R P EMR + E G A+GS + + GNT V+ A +++K +
Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAA----SLEDKPPPWLRGQGR 56
Query: 66 ALVRCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHL--MPRSQI 117
V EY+M +T R R KP G R+ EI +I +++ A +THL + Q+
Sbjct: 57 GWVTAEYAMLPRATHTRTRRESSSGKPSG--RTQEIQRLIGRSLRA--VTHLPALGERQV 112
Query: 118 DIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPL 166
+ VLQADGGTR+A I+ A LAL D P+RD V + S G ++ P+
Sbjct: 113 VVDCDVLQADGGTRTAAISGAWLALHDCFQWMRSRSIIKENPLRDHVAAVSCGVCDAGPV 172
Query: 167 LDLNYVEDSAGGPDV 181
+DL+Y EDS D
Sbjct: 173 IDLDYGEDSTAKTDA 187
>gi|406937769|gb|EKD71136.1| hypothetical protein ACD_46C00264G0002 [uncultured bacterium]
Length = 237
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R R E+R++R A+GS + E G+TKVI + V G P +++ S
Sbjct: 1 MRPSKRANQELRKIRLTRNYTKHAEGSILVEFGDTKVICTASIVPGVPPFLKD-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ V EY M ST DRM+ K K R+ EI +I +++ A + + + + I +
Sbjct: 56 RGWVTAEYGMLPRSTHDRMQRESAKGKQTGRTQEIQRLIARSLRAAVDLNALGENTIVVD 115
Query: 121 VQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I +AL D A P + V S S G P+LDL
Sbjct: 116 CDVIQADGGTRTASITGGCVALHDAITHLVKKKSLAAQPFQQFVASISVGIYQGHPILDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS+ D+ V
Sbjct: 176 DYAEDSSADTDMNV 189
>gi|399525424|ref|ZP_10765863.1| tRNA adenylyltransferase [Atopobium sp. ICM58]
gi|398373187|gb|EJN51152.1| tRNA adenylyltransferase [Atopobium sp. ICM58]
Length = 255
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 18/183 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR P+++R + G +GS + E GNT+V+ V E + ++ S + V
Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSVLIEFGNTRVLC-VASFTEGVPRWKRDSGEGWV 64
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R K K R+ EIS +I +++ + + + I + VL
Sbjct: 65 TGEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVL 124
Query: 125 QADGGTRSACINAATLALQDA-------GI--P----MRDIVTSCSAGYLNSTPLLDLNY 171
+ADGGTR+A I A +AL DA GI P + D +++ S G ++ TP+LDL Y
Sbjct: 125 RADGGTRTAAITGAYVALADAVSWAKDQGILKPSATVLTDSISAISVGVIDGTPMLDLPY 184
Query: 172 VED 174
VED
Sbjct: 185 VED 187
>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
Length = 255
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 26/195 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGRR E+R ++ ++ +GS + E G+TKVI A+V P ++ K Q
Sbjct: 1 MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVPPFLKGKGQ---- 56
Query: 65 QALVRCEYSMANFSTGDR-MRKP---KGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDI 119
+ EYSM +T R +R+ K R+ EI +I + M + LT L R+ + +
Sbjct: 57 -GWITAEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERT-LWV 114
Query: 120 FVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I A +A+ DA +P++D V + S G +N PLLD
Sbjct: 115 DCDVIQADGGTRTASITGAFVAVADALIKLYEDGIIQSVPIKDFVAAVSVGIVNGKPLLD 174
Query: 169 LNYVEDSAGGPDVTV 183
LN+ EDS D+ V
Sbjct: 175 LNFEEDSMAQVDMNV 189
>gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331]
gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii Q321]
gi|61216043|sp|Q83EL9.1|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043758|sp|A9KGR9.1|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|189043759|sp|A9NB33.1|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331]
gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii Q321]
Length = 237
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R R E+R L A+GS + +GNTKVI + V G PR ++N S+
Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKN-----SE 55
Query: 65 QALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + EY M ST RM + K R+ EI +I +++ A + L+ I I
Sbjct: 56 QGWLTAEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITID 115
Query: 121 VQVLQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A IN + +A LQ GI P++ V + S G P+LDL
Sbjct: 116 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ V
Sbjct: 176 DYAEDSNAHTDMNV 189
>gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
Length = 245
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|452746257|ref|ZP_21946080.1| ribonuclease PH [Pseudomonas stutzeri NF13]
gi|452009876|gb|EME02086.1| ribonuclease PH [Pseudomonas stutzeri NF13]
Length = 240
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDC 117
Query: 122 QVLQADGGTRSACINAATLALQD------------AGIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL D AG P++ ++ + S G P+LDL
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGGLKAGDPVKQMIAAVSVGIYQGEPVLDL 177
Query: 170 NYVEDSAGGPDVTV 183
+Y+EDSA D+ V
Sbjct: 178 DYLEDSAAETDLNV 191
>gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 239
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 20/226 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR PT++R + + A+GS + E G+T+V+ A V + ++ + + V
Sbjct: 3 RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASVEDGVP-RWRRGTGEGWVT 61
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M ST R + K R+ EIS ++ +++ A + M I + VLQ
Sbjct: 62 AEYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA P+ + + S G + P LDLNY+ED
Sbjct: 122 ADGGTRTAAITGAYVALADAMKWLRKRRKLKNNPLTGSLAAVSVGVVQGQPRLDLNYLED 181
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGC 217
S D+ V ++ K +Q A+ + ++ LA+ GC
Sbjct: 182 SVADTDMNV-VITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGC 226
>gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
Length = 238
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 88/193 (45%), Gaps = 22/193 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R GR P + R +R A+GS + E G+TKVI V+NK Q
Sbjct: 1 MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTA----SVENKVPPFLRGEGQ 56
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM + K R+ EI +I +++ A + + I I
Sbjct: 57 GWITAEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I +AL DA P++ +V + S G P++DL+
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNFLVAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLD 176
Query: 171 YVEDSAGGPDVTV 183
Y EDS D+ V
Sbjct: 177 YPEDSVAETDMNV 189
>gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
Length = 235
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R GR+P EMR++ E G A+GS + +MG+T V+ P ++N S
Sbjct: 1 MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKN-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMRKPKGD---RRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
V EY M +T RM++ D R+ EI ++ + + A + + QI I
Sbjct: 56 LGWVTAEYGMLPRATHSRMKREAKDGQSGRTQEIQRLVGRALRAGVDRVALGERQITIDC 115
Query: 122 QVLQADGGTRSACINAATLALQ-------DAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR A I +AL+ AG+ P+ V++ S G LLDL+
Sbjct: 116 DVIQADGGTRCAAITGGWVALRLAVNKLLKAGVIISDPLSAPVSAISCGIYAGQALLDLD 175
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNT---FEDVMQLAIEG 216
Y EDS G D + T D++ +QM A+ T + + ++ LA +G
Sbjct: 176 YPEDSEAGVDGN--FIMTADRLVEIQMSAEGATFSRAQMDTLLDLATQG 222
>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
gi|74736141|sp|Q5RKV6.1|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog; Short=hMtr3; AltName: Full=p11
gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
Length = 272
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---AGYLNSTPLLDLNYVEDSAGGP 179
+L+ G +A + AA LAL DAG+ M D+V C A T LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA 209
Query: 180 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
+TV ++P L++V LL T ++ + ++L +EGC+
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQ 249
>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
Length = 238
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R + R+ ++R ++ A A+GS + E GNTKV+ A V PR ++ + +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RMR+ K R+ EI +I +++ A + M + +
Sbjct: 57 -GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A++A+ DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
Y EDSA D+ V ++ ++ +Q A+ T ++M+L K ++ +
Sbjct: 176 EYTEDSAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIV 229
>gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53]
gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53]
Length = 243
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P E+R + E G V A+GS + + G+T V+ E + + V
Sbjct: 7 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTA-SLEERLPPWLKGQGRGWV 65
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T +R R+ K R+ EI +I +++ A + M QI + VL
Sbjct: 66 TAEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVL 125
Query: 125 QADGGTRSACINAATLALQDAGIPM-----------RDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL D M RD V + S G N TP+LDL+Y E
Sbjct: 126 QADGGTRTAAITGAWVALADCLAWMKARNMIKAKVLRDNVAAISCGIYNGTPVLDLDYAE 185
Query: 174 DSAGGPD 180
DS D
Sbjct: 186 DSEAETD 192
>gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493]
gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493]
gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
Length = 239
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R R E+R L A+GS + +GNTKVI + V G PR ++N S+
Sbjct: 3 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKN-----SE 57
Query: 65 QALVRCEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + EY M ST RM + K R+ EI +I +++ A + L+ I I
Sbjct: 58 QGWLTAEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITID 117
Query: 121 VQVLQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A IN + +A LQ GI P++ V + S G P+LDL
Sbjct: 118 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDL 177
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D+ V
Sbjct: 178 DYAEDSNAHTDMNV 191
>gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035]
gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035]
Length = 238
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 23/228 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R GR +EMR + E G + A+GS + ++G+T V+ V + S V
Sbjct: 1 MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKG-SGLGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR A I +AL+ A P+ D V + S G P+LDL+Y E
Sbjct: 120 QADGGTRCASITGGWVALKLAVQKLMKAGDVLSDPLIDPVAAVSCGIYAGQPVLDLDYPE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPT------NTFEDVMQLAIE 215
DS G D I+ ++ +QM A+ T N D+ +L ++
Sbjct: 180 DSEAGVDGNF-IMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVD 226
>gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis sp. HTCC2633]
gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis sp. HTCC2633]
Length = 238
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R +GR+P +R L E+G A+GS + GNTKV+ V + + V
Sbjct: 1 MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASVEDNVPPWLRGQG-KGWV 59
Query: 69 RCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
EYSM +T R R KP G R+ EI +I +++ A + + QI +
Sbjct: 60 TGEYSMLPRATHQRTRREVQSGKPSG--RTQEIQRLIGRSLRAAVDLKALGERQIVVDCD 117
Query: 123 VLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
VLQADGGTR+A I A LAL+ A P+ + + SAG +N +LDL Y
Sbjct: 118 VLQADGGTRTAAITGAWLALKAAVAYLMEEDVLKADPVIAQIAAVSAGVVNGDCVLDLEY 177
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQM---DAKLPTNTFEDVMQLAIEG 216
ED D +L + V +Q DA + F+ + LA +G
Sbjct: 178 EEDRVAETDANF-VLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKG 224
>gi|396584104|ref|ZP_10484601.1| tRNA adenylyltransferase [Actinomyces sp. ICM47]
gi|395548322|gb|EJG15604.1| tRNA adenylyltransferase [Actinomyces sp. ICM47]
Length = 255
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR P+++R + G +GS + E GNT+V+ V E + ++ S + V
Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSVLIEFGNTRVLC-VASFTEGVPRWKRDSGEGWV 64
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R K K R+ EIS +I +++ + + + I + VL
Sbjct: 65 TGEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVL 124
Query: 125 QADGGTRSACINAATLALQDA-------GI--P----MRDIVTSCSAGYLNSTPLLDLNY 171
+ADGGTR+A I A +AL DA GI P + D +++ S G ++ TP+LDL Y
Sbjct: 125 RADGGTRTAAITGAYVALADAVTWAKEQGILKPSTTVLTDSISAISVGVIDGTPMLDLPY 184
Query: 172 VEDSAGGPDVTV 183
VED D+ V
Sbjct: 185 VEDVRAQTDMNV 196
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R L + +A GSA + G TKV AAVYGP+ K + ++A +
Sbjct: 5 RADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPK-AGTKKNENPEKASIE 63
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ +TG + KG +++++T+E+ + + P + + VQV+ DG
Sbjct: 64 VTWKP---NTGQIGQVEKG------YEMILKRTLESICIRSIYPNTTTSVIVQVVHDDGA 114
Query: 130 TRSACINAATLALQDAGIPMRDI-VTSCSAGYLNSTPLLDLNYVEDSAGG-------PDV 181
INAA AL DAGIP+R + V C + NS +LD E+ P+
Sbjct: 115 LLPCAINAACAALVDAGIPLRHLAVAICCSVADNSCIILDPTKQEEEKAKAFAYLVFPNT 174
Query: 182 TVGILP 187
+ +LP
Sbjct: 175 NISVLP 180
>gi|409427131|ref|ZP_11261658.1| ribonuclease PH [Pseudomonas sp. HYS]
Length = 240
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M STG+R ++ K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALVDALRVVKKRGGLKGGDPLKHMIAAVSVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
>gi|421503119|ref|ZP_15950070.1| ribonuclease PH [Pseudomonas mendocina DLHK]
gi|400346195|gb|EJO94554.1| ribonuclease PH [Pseudomonas mendocina DLHK]
Length = 239
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTVSVETGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R ++ K R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMTKLGENTLYVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQGEPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
gi|75431903|sp|Q5E8P0.1|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
Length = 238
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR ++R + A A+GS + E GNTKVI A+V PR ++ K +
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M +T R R+ K R+ EI +I +++ A + + I +
Sbjct: 57 -GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A++AL DA PM+ V + S G N + DL
Sbjct: 116 CDVIQADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGEAICDL 175
Query: 170 NYVEDSAGGPDVTV 183
YVEDSA D+ V
Sbjct: 176 EYVEDSAADTDMNV 189
>gi|399527629|ref|ZP_10767320.1| tRNA adenylyltransferase [Actinomyces sp. ICM39]
gi|398361821|gb|EJN45559.1| tRNA adenylyltransferase [Actinomyces sp. ICM39]
Length = 255
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR P+++R + G +GS + E GNT+V+ V E + ++ S + V
Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSVLIEFGNTRVLC-VASFTEGVPRWKRDSGEGWV 64
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R K K R+ EIS +I +++ + + + I + VL
Sbjct: 65 TGEYSMLPRATEQRSSRESIKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVL 124
Query: 125 QADGGTRSACINAATLALQDA-------GI--P----MRDIVTSCSAGYLNSTPLLDLNY 171
+ADGGTR+A I A +AL DA GI P + D +++ S G ++ TP+LDL Y
Sbjct: 125 RADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPY 184
Query: 172 VEDSAGGPDVTV 183
VED D+ V
Sbjct: 185 VEDVRAETDMNV 196
>gi|429730105|ref|ZP_19264757.1| tRNA nucleotidyltransferase [Corynebacterium durum F0235]
gi|429148399|gb|EKX91407.1| tRNA nucleotidyltransferase [Corynebacterium durum F0235]
Length = 325
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR EMR +R G GS + E GNT+V+ + + + S + +
Sbjct: 71 RADGRAQDEMRPIRITRGFTNNPAGSVLVEFGNTRVMCTASVEERIP-RFKYGSGEGWLT 129
Query: 70 CEYSMANFSTGDRM----RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM +T +RM K K R+ EIS ++ +++ A I + + I I VLQ
Sbjct: 130 AEYSMLPAATHERMPRESMKGKVKGRTHEISRLVGRSLRAAIDLRELGENTIAIDCDVLQ 189
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA G P+ V + S G ++ LDL Y ED
Sbjct: 190 ADGGTRTASITGAYVALADAIAELKRRGVVTGNPLLPPVAAVSVGLIDGHVCLDLPYEED 249
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL---AIEGCKAV 220
S D+ V I+ + +Q + T T E + QL A +GC+ +
Sbjct: 250 SRADVDMNV-IMTESREFVEIQGTGEHSTFTREQLNQLLDAAEKGCREI 297
>gi|395773976|ref|ZP_10454491.1| ribonuclease PH [Streptomyces acidiscabies 84-104]
Length = 245
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 24/237 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTLERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM A + GDR +R G R + EIS +I +++ A I + + I + VL
Sbjct: 62 AEYSMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTIVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 121 QADGGTRTAAITGAYVALADAVAWAQGRKLIKANRQPITGTVSAVSVGIVGGVPLLDLCY 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIR 225
ED D+ V + + +Q A+ + ++ LA+ GC +A R
Sbjct: 181 EEDVRADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVSGCTDLAALQR 236
>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
Length = 245
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 24/238 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV+ V + ++ S + V
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M A + GDR +R G R + EIS +I +++ A I + + + + VL
Sbjct: 62 AEYAMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTVVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 121 QADGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRY 180
Query: 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + + +Q A+ + ++ LA+ GC +A R+
Sbjct: 181 EEDVKADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRK 237
>gi|429743111|ref|ZP_19276701.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429166630|gb|EKY08593.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 242
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 13 GRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEY 72
GR ++R LR + ADGSA+ E G+T+VI V + Q V EY
Sbjct: 8 GRAADQLRPLRITPHFLPHADGSALIECGSTRVICTASIDENVP-PFLRGKGQGWVTAEY 66
Query: 73 SMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
M ST RMR+ K R+ EI +I +++ A + + QI I V+QADG
Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAAVNMEKLGERQILIDCDVIQADG 126
Query: 129 GTRSACINAATLA--------LQDAGI---PMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
GTR+A I A +A L D I P+ + + SAG + PLLDL+Y EDS
Sbjct: 127 GTRTASITGAYVALALAVRKLLSDGRIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGC 186
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
DV + ++ + +Q A+ +F+++ +L
Sbjct: 187 DSDVNI-VMNADGGIIEIQGTAEGAAFSFDELAEL 220
>gi|403049889|ref|ZP_10904373.1| ribonuclease PH [SAR86 cluster bacterium SAR86D]
Length = 235
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R + R+P E+R+L E A+GS + GNTKVI V + + SD+ V
Sbjct: 3 RSNNRKPNELRELTIESNVNIHAEGSVLVSFGNTKVICTATIDTNVP-RWMRGSDEGWVT 61
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M ST +RM + K R+ EI +I +++ + + I+I V+Q
Sbjct: 62 AEYGMLPRSTNERMGREAARGKQSGRTQEIQRLIGRSLRQAVNLKYIKGKTINIDCDVIQ 121
Query: 126 ADGGTRSACINAATLAL-------QDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
ADGGTR+A I +AL D ++ V + S G L++ +LDL+Y EDS+
Sbjct: 122 ADGGTRTASITGGCVALFLALMNHHDDHRAIKAHVAAVSLGILDNQVILDLDYNEDSSAE 181
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231
D+ + + +L + + + P + E + ++ G A+A+ I + + L
Sbjct: 182 TDLNLVMTDSLKLIEIQGTGEEAPF-SKEQLNEMLEVGSSAIADIIEKQKACL 233
>gi|381183937|ref|ZP_09892623.1| ribonuclease PH [Listeriaceae bacterium TTU M1-001]
gi|380316165|gb|EIA19598.1| ribonuclease PH [Listeriaceae bacterium TTU M1-001]
Length = 248
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 18/234 (7%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R++ E + +GS + GNTKVI +V + + +
Sbjct: 1 MRFDGRNKEELREINIEKNYIIHPEGSVLISAGNTKVICNASIEEKVP-PFMRGEGKGWI 59
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +TG R K K R+ EI +I + + A + + + I + V+
Sbjct: 60 SAEYAMLPRATGTRNIRESSKGKVSGRTMEIQRLIGRALRAVVDLNALGERTIWLDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYL-NSTPLLDLNYV 172
QADGGTR+A I A +A+ A P++D + + S G L +LDLNYV
Sbjct: 120 QADGGTRTASITGAFIAMTLAIYELHKEKSFDSFPIQDFLAATSVGILEEGGAVLDLNYV 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
EDSA D+ + I+ + LQ + T + E++ +L G K + I++
Sbjct: 180 EDSAANVDMNI-IMTGSGRFVELQGTGEEATFSDEELTELLQLGKKGIQELIQK 232
>gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37]
gi|166228305|sp|A1T097.1|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37]
Length = 239
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 24/194 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R R P + R+++ A+GS + EMGNTKV+ A+V G PR ++ K +
Sbjct: 1 MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGK---- 56
Query: 65 QALVRCEYSMANFSTGDR-MR---KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R MR K K R+ EI +I +++ A + + + + I +
Sbjct: 57 -GWVTAEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I +AL DA P++ ++ + S G TP+ DL
Sbjct: 116 CDVIQADGGTRTAAITGGCIALADALNWMVKKGKLKKSPLKQMIAAVSVGIYQGTPVCDL 175
Query: 170 NYVEDSAGGPDVTV 183
+Y EDS D V
Sbjct: 176 DYAEDSNAETDTNV 189
>gi|443627159|ref|ZP_21111557.1| putative Ribonuclease PH [Streptomyces viridochromogenes Tue57]
gi|443339298|gb|ELS53542.1| putative Ribonuclease PH [Streptomyces viridochromogenes Tue57]
Length = 245
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R + E A+GS + G+TKV+ V + ++ S + V
Sbjct: 3 RFDGRTPEQLRPVTIERAWSKHAEGSVLVSFGDTKVLCTASFSEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M A + GDR K K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVSWAQGKKLIKPGRKPLTGTVSAVSVGIVGGVPLLDLCYQ 181
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
ED D+ V + + +Q A+ + ++ LA+ GC +A R+
Sbjct: 182 EDVKAETDMNV-VCTGDGRFVEVQGTAEAEPFARAELDALLDLAVSGCAELAELQRK 237
>gi|386355575|ref|YP_006053821.1| ribonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365806083|gb|AEW94299.1| putative ribonuclease [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 247
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 20/194 (10%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R+DGR P ++R + E G A+GS + G+T+V+ V + ++ S +
Sbjct: 4 GVRIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVP-RWRKGSGEGW 62
Query: 68 VRCEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY+M A + GDR +R G R + EIS +I +++ A I + + + +
Sbjct: 63 VTAEYAMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTVVLDCD 121
Query: 123 VLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I A +AL DA P+ V++ S G ++ P+LDL
Sbjct: 122 VLQADGGTRTAAITGAYVALADAVSWAQEHKLVKAKAQPLTGSVSAVSVGIIDGVPMLDL 181
Query: 170 NYVEDSAGGPDVTV 183
Y ED D+ V
Sbjct: 182 RYEEDVRAETDMNV 195
>gi|357399538|ref|YP_004911463.1| ribonuclease PH [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337765947|emb|CCB74656.1| ribonuclease PH [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 249
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 20/194 (10%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R+DGR P ++R + E G A+GS + G+T+V+ V + ++ S +
Sbjct: 6 GVRIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVP-RWRKGSGEGW 64
Query: 68 VRCEYSM---ANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
V EY+M A + GDR +R G R + EIS +I +++ A I + + + +
Sbjct: 65 VTAEYAMLPRATNTRGDRESVRGRIGGR-THEISRLIGRSLRAVIDYKALGENTVVLDCD 123
Query: 123 VLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDL 169
VLQADGGTR+A I A +AL DA P+ V++ S G ++ P+LDL
Sbjct: 124 VLQADGGTRTAAITGAYVALADAVSWAQEHKLVKAKAQPLTGSVSAVSVGIIDGVPMLDL 183
Query: 170 NYVEDSAGGPDVTV 183
Y ED D+ V
Sbjct: 184 RYEEDVRAETDMNV 197
>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|375289262|ref|YP_005123803.1| ribonuclease PH [Corynebacterium pseudotuberculosis 3/99-5]
gi|379715946|ref|YP_005304283.1| ribonuclease PH [Corynebacterium pseudotuberculosis 316]
gi|383314832|ref|YP_005375687.1| Ribonuclease PH [Corynebacterium pseudotuberculosis P54B96]
gi|384505246|ref|YP_005681916.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|384507349|ref|YP_005684018.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|384509438|ref|YP_005686106.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
gi|384511521|ref|YP_005691099.1| Ribonuclease PH [Corynebacterium pseudotuberculosis PAT10]
gi|385808134|ref|YP_005844531.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 267]
gi|386740965|ref|YP_006214145.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 31]
gi|387137171|ref|YP_005693151.1| ribonuclease PH [Corynebacterium pseudotuberculosis 42/02-A]
gi|387139229|ref|YP_005695208.1| Ribonuclease PH [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387141213|ref|YP_005697191.1| ribonuclease PH [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850991|ref|YP_006353226.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 258]
gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
gi|341825460|gb|AEK92981.1| Ribonuclease PH [Corynebacterium pseudotuberculosis PAT10]
gi|348607616|gb|AEP70889.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 42/02-A]
gi|349735707|gb|AEQ07185.1| Ribonuclease PH [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355393004|gb|AER69669.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1/06-A]
gi|371576551|gb|AEX40154.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 3/99-5]
gi|377654652|gb|AFB73001.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 316]
gi|380870333|gb|AFF22807.1| Ribonuclease PH [Corynebacterium pseudotuberculosis P54B96]
gi|383805527|gb|AFH52606.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 267]
gi|384477659|gb|AFH91455.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 31]
gi|388248297|gb|AFK17288.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 258]
Length = 247
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR +MR ++ G GS + E GNT+V+ V + ++ S + +
Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVP-RFKRDSGEGWLT 69
Query: 70 CEYSMANFSTGDR-----MR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EY+M +T DR MR K KG R+ EIS +I +++ A + + + I+I V
Sbjct: 70 AEYAMLPAATLDRNPRESMRGKVKG--RTHEISRLIGRSLRAAVDLSELGENTINIDCDV 127
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P++D V + S G ++ LDL Y
Sbjct: 128 LQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYE 187
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE-----DVMQLAIEGC 217
EDS D+ V + +++ NTF+ ++ A +GC
Sbjct: 188 EDSRADVDMNV----IMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGC 233
>gi|420236323|ref|ZP_14740809.1| ribonuclease PH [Parascardovia denticolens IPLA 20019]
gi|391880499|gb|EIT88990.1| ribonuclease PH [Parascardovia denticolens IPLA 20019]
Length = 260
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 18/194 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR ++R ++ G +GS + E G+T+V+ + V + ++ S V
Sbjct: 17 VRADGRAVDQLRPVKITRGWTQAPEGSVLIECGDTRVLCTATFTQGVP-RWRRDSGLGWV 75
Query: 69 RCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T DR K K R+ EIS +I + + + + +QI I VL
Sbjct: 76 TAEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMSALGENQIQIDCDVL 135
Query: 125 QADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A + A +AL DA + D V++ S G +N TP+LDL Y
Sbjct: 136 QADGGTRTASVTGAYMALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPY 195
Query: 172 VEDSAGGPDVTVGI 185
VEDS D+ V +
Sbjct: 196 VEDSQAMTDMNVAM 209
>gi|392401152|ref|YP_006437752.1| ribonuclease PH [Corynebacterium pseudotuberculosis Cp162]
gi|390532230|gb|AFM07959.1| Ribonuclease PH [Corynebacterium pseudotuberculosis Cp162]
Length = 247
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR +MR ++ G GS + E GNT+V+ V + ++ S + +
Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVP-RFKRDSGEGWLT 69
Query: 70 CEYSMANFSTGDR-----MR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EY+M +T DR MR K KG R+ EIS +I +++ A + + + I+I V
Sbjct: 70 AEYAMLPAATLDRNPRESMRGKVKG--RTHEISRLIGRSLRAAVDLSELGENTINIDCDV 127
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P++D V + S G ++ LDL Y
Sbjct: 128 LQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYE 187
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE-----DVMQLAIEGC 217
EDS D+ V + +++ NTF+ ++ A +GC
Sbjct: 188 EDSRADVDMNV----IMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGC 233
>gi|350584883|ref|XP_003481840.1| PREDICTED: exosome complex component MTR3-like [Sus scrofa]
Length = 254
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 28/217 (12%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ-------A 66
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + + A
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGEAPA 90
Query: 67 LVR----CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+R C++ A FS G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
+L+ G +A + AA LAL DAGI M D+V C E+ A +T
Sbjct: 150 LLEDGGSALAAALTAAALALADAGIEMYDLVVGCG--------------XEERAAA-SLT 194
Query: 183 VGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 218
V ++P L++V LL PT ++ + ++L +EGC+
Sbjct: 195 VALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQ 231
>gi|393766681|ref|ZP_10355235.1| ribonuclease PH [Methylobacterium sp. GXF4]
gi|392727775|gb|EIZ85086.1| ribonuclease PH [Methylobacterium sp. GXF4]
Length = 237
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 29/225 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R R E+R + E A+GS + GNT+V+ GP ++ S
Sbjct: 1 MRPSKRAADELRPVTLERAVSRYAEGSCLVSFGNTRVLCTASLEERGPPWLRG-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + EY+M +T DR R KP G R+ EI +I +++ A M Q+
Sbjct: 56 KGWITAEYAMLPRATHDRTRREINSGKPSG--RTQEIQRLIGRSLRAVTNLPAMGERQVT 113
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLL 167
+ V+QADGGTR+A I A +AL D P+RD V + S G TP+L
Sbjct: 114 VDCDVIQADGGTRTAAITGAWVALYDCFAWMRTRSIISVDPLRDHVAAVSCGLYKGTPVL 173
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
DL+Y EDSA D +L + +Q A++ + + +++L
Sbjct: 174 DLDYAEDSAAETDANF-VLTGTGGIVEVQGTAEMEPFSVDQLLEL 217
>gi|343501541|ref|ZP_08739415.1| ribonuclease PH [Vibrio tubiashii ATCC 19109]
gi|418481562|ref|ZP_13050597.1| ribonuclease PH [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342817586|gb|EGU52464.1| ribonuclease PH [Vibrio tubiashii ATCC 19109]
gi|384570819|gb|EIF01370.1| ribonuclease PH [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 238
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R + R+ ++R ++ A A+GS + E GNTKV+ A V PR ++ + +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RMR+ K R+ EI +I +++ A + M + +
Sbjct: 57 -GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A++A+ DA PM+ V + S G L L DL
Sbjct: 116 CDVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKSHVAAVSVGILGEDILCDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
Y EDSA D+ V ++ ++ +Q A+ T ++M+L K + +
Sbjct: 176 EYTEDSAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIV 229
>gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1]
gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1]
Length = 244
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 SEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ V + S G ++ PLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043]
gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043]
Length = 245
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMS 63
G+R GR+P + R++ E G A+GS + G+TKV+ A+V PR ++ K Q
Sbjct: 5 GMRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQ--- 61
Query: 64 DQALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ EY M A + G R + K R+ EI +I +++ + + I +
Sbjct: 62 --GWITAEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITV 119
Query: 120 FVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I +AL DA P + +V+S S G P++D
Sbjct: 120 DCDVIQADGGTRTASITGGCVALVDAIHHLQREKLIKKDPFKQLVSSVSVGIFKGQPVVD 179
Query: 169 LNYVEDSAGGPDVTV 183
L+Y EDS G D+ V
Sbjct: 180 LDYPEDSTAGTDMNV 194
>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 240
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M +TG+R ++ K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
>gi|334563352|ref|ZP_08516343.1| ribonuclease PH [Corynebacterium bovis DSM 20582]
Length = 276
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 20/191 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R +R G GS + E G+TKV+ V + ++ S + +
Sbjct: 19 RADGRATDELRPVRITRGFTDNPAGSVLVEFGSTKVMCTASVEVGVP-RFKRDSGEGWLT 77
Query: 70 CEYSMANFSTGDRM------RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
EYSM ST +RM K KG R+ EIS ++ + + A + + + + + V
Sbjct: 78 AEYSMLPGSTHERMPRESMRGKVKG--RTHEISRLVGRALRAAVDLRELGENTVMVDCDV 135
Query: 124 LQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G P+R+ V + S G ++ P LDL Y
Sbjct: 136 LQADGGTRTAAITGAYVALADALDVLAERGVVPGTPLREPVAAVSVGVIDGVPCLDLPYE 195
Query: 173 EDSAGGPDVTV 183
EDS D+ V
Sbjct: 196 EDSRADVDMNV 206
>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 240
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M +TG+R ++ K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
>gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110]
gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110]
Length = 240
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 28/239 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQA 66
R DGR+P ++R + E+ + GS V E G TKV+ ++++ + S Q
Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTA----SIEDRVPRFLLGSGQG 60
Query: 67 LVRCEYSMANFSTGDRMRKP--KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ EY M +T +R R+ K R+ EI +I +++ +CI + I I VL
Sbjct: 61 WLTAEYRMLPSATQERQRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVL 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QAD GTR+A I +AL A P+R V + S G + LDLNY E
Sbjct: 121 QADAGTRTASITGGYVALGLAVNKLIKQGELIQSPLRFPVAAISVGLIEGEAFLDLNYPE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF-----EDVMQLAIEGCKAVANYIREV 227
DS D V + LD L+++ N+F D++ LA G K + + +V
Sbjct: 181 DSKADIDFNVVMTENLD---LIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKV 236
>gi|336313100|ref|ZP_08568043.1| ribonuclease PH [Shewanella sp. HN-41]
gi|335863220|gb|EGM68378.1| ribonuclease PH [Shewanella sp. HN-41]
Length = 237
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 29/238 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I + + AC+ + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYKGEAISDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
YVEDSA D+ V ++ K+ +Q A+ + E++++L N IRE+
Sbjct: 176 EYVEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFSHEELIEL----LGLAKNSIREI 228
>gi|422651171|ref|ZP_16713969.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 240
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M +TG+R ++ K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVLKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
>gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
Length = 244
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 26/215 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
LR DGR ++R + G A+A+GSA+ E GNT+V+ PR ++ +
Sbjct: 3 LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGT---- 58
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M +T R K K R+ EIS +I +++ A + T + + I +
Sbjct: 59 -GWVTAEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLD 117
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI------PMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL +A GI + D V + S G ++ TP+L
Sbjct: 118 CDVLQADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPML 177
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP 202
DL Y ED D+ V + + D V + +P
Sbjct: 178 DLPYEEDVRAETDMNVVVTGSGDFVEVQGTAEGVP 212
>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
gi|189043757|sp|A5N2V9.1|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808584|sp|B9DWL2.1|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 248
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 24/232 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQ 65
+R+DGR+ ++R ++ A+GS + E G+TKVI +++K + +
Sbjct: 1 MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTA----SIEDKVPPFLKGRGE 56
Query: 66 ALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ CEY+M +T R + + + D R+ EI +I + + + + + I +
Sbjct: 57 GWITCEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDC 116
Query: 122 QVLQADGGTRSACINAATLALQDAG-----------IPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I+ A +AL DA P+RD V++ S G +N T +LDL
Sbjct: 117 DVIQADGGTRTASISGAFVALVDAVNKLHKQNPFTIYPIRDFVSAVSVGIVNDTRMLDLC 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGCKAV 220
Y+EDS D+ V + + + V + + P ++++ LA +G K++
Sbjct: 177 YLEDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSM 228
>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii L2-6]
Length = 714
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 12/226 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA-VYGPREVQNKSQQMSDQ 65
EG R+DGR E+R L AE+G + + GS +F G T+V+ G + ++D+
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDE 378
Query: 66 ALVRC--EYSMANFSTGD-RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
R Y+ +S G+ R + G R +L R + P + I +
Sbjct: 379 QTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALLPVLPSLEEFPYT-IRCVSE 437
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSAGG 178
VL ++G T A I +TLAL DAG+P++ V S G + +LD+ VED G
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGDRWMTMLDIQGVEDFHGD 497
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
D VG T +T +QMD K+ T+ D++ A E C+ YI
Sbjct: 498 MDFKVG--GTRKGITAIQMDIKIDGLTY-DIIAEAFEKCRKGRLYI 540
>gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2]
gi|123099251|sp|Q2J324.1|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2]
Length = 237
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P E+R + E G V A+GS + + G+T V+ E + + V
Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTAT-LEERLPPWLKGQGRGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T +R R+ K + R+ EI +I +++ + + QI + VL
Sbjct: 60 TAEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVL 119
Query: 125 QADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL D G MRD V + S G N TP+LDL+Y E
Sbjct: 120 QADGGTRTASITGAWVALADCLAWMKTRNMLKGQVMRDNVAAISCGIYNGTPVLDLDYAE 179
Query: 174 DSAGGPD 180
DS D
Sbjct: 180 DSEAETD 186
>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
Length = 698
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 28/240 (11%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV----YGPREVQNK 58
++ E +R DGR+P E+R L +E+G + +A GS +F G T+ ++ + G ++ +
Sbjct: 312 LIAAEKIRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDG 371
Query: 59 SQQMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
++ + Y+ NFS G+ +R P G R +L R L H++P +
Sbjct: 372 LGPEQEKRFMH-HYNFPNFSVGETGPVRAP-GRREIGHGALGERA------LRHIIPDTS 423
Query: 117 -----IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLL 167
I I +VL+++G + A I +TLAL DAG+P++ V + G + + T L
Sbjct: 424 KFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILT 483
Query: 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYI 224
D+ +ED+ G D+ + T D +T +QMD K L E+ ++ A +G A+ +++
Sbjct: 484 DIQGMEDALG--DMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHM 541
>gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1]
gi|254808597|sp|C0QTN9.1|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1]
Length = 261
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 43/259 (16%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM---SDQ 65
+R DGR+PT++R ++ A+GS + EMGNTKVI ++ K + Q
Sbjct: 1 MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITA----SIEEKVPPFLRGTGQ 56
Query: 66 ALVRCEYSMANFSTGDRMRK------PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ EY+M ST R + P G R+ EI +I +++ + + + +
Sbjct: 57 GWITAEYAMLPRSTESRSIREVVRGAPSG--RTQEIQRLIGRSLRGVVDLKKLGERTLWV 114
Query: 120 FVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR A I A +A+ DA I P++D V + S G + + +LD
Sbjct: 115 DCDVIQADGGTRVASITGAFIAVADAMIKLTESGKVRQNPLKDYVAAISTGIVGNEVVLD 174
Query: 169 LNYVEDSAGGPDVT---------VGILPTLDKVTLLQMD-------AKLPTNTFEDVMQL 212
LN+ EDS+ D+ V + T ++ + Q + KL N + +
Sbjct: 175 LNFKEDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKK 234
Query: 213 AIEGCKAVANYIR-EVRKF 230
IEG ++ ++ R +++F
Sbjct: 235 FIEGMPSIGHWKRLSIKEF 253
>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
gi|410093795|ref|ZP_11290265.1| ribonuclease PH [Pseudomonas viridiflava UASWS0038]
gi|422223953|ref|ZP_16383782.1| ribonuclease PH [Pseudomonas avellanae BPIC 631]
gi|422589666|ref|ZP_16664327.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422596571|ref|ZP_16670852.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
gi|422607281|ref|ZP_16679282.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
gi|422616182|ref|ZP_16684888.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072]
gi|422631360|ref|ZP_16696547.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
gi|422643736|ref|ZP_16706875.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
gi|422666817|ref|ZP_16726684.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|422674479|ref|ZP_16733832.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273]
gi|422680044|ref|ZP_16738316.1| ribonuclease PH [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|424065422|ref|ZP_17802897.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|424070102|ref|ZP_17807539.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|440723141|ref|ZP_20903508.1| ribonuclease PH [Pseudomonas syringae BRIP34876]
gi|440728395|ref|ZP_20908611.1| ribonuclease PH [Pseudomonas syringae BRIP34881]
gi|440743065|ref|ZP_20922384.1| ribonuclease PH [Pseudomonas syringae BRIP39023]
gi|443640952|ref|ZP_21124802.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B64]
gi|75503908|sp|Q4ZZY6.1|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|63254190|gb|AAY35286.1| RNAse PH [Pseudomonas syringae pv. syringae B728a]
gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072]
gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273]
gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|407992820|gb|EKG34370.1| ribonuclease PH [Pseudomonas avellanae BPIC 631]
gi|408001316|gb|EKG41633.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|408003395|gb|EKG43583.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|409758820|gb|EKN44083.1| ribonuclease PH [Pseudomonas viridiflava UASWS0038]
gi|440360221|gb|ELP97505.1| ribonuclease PH [Pseudomonas syringae BRIP34876]
gi|440361888|gb|ELP99104.1| ribonuclease PH [Pseudomonas syringae BRIP34881]
gi|440376436|gb|ELQ13109.1| ribonuclease PH [Pseudomonas syringae BRIP39023]
gi|443280969|gb|ELS39974.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B64]
Length = 240
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M +TG+R ++ K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
>gi|336316853|ref|ZP_08571742.1| ribonuclease PH [Rheinheimera sp. A13L]
gi|335879018|gb|EGM76928.1| ribonuclease PH [Rheinheimera sp. A13L]
Length = 237
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 25/242 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R GR +++R + A A+GS + E GNTKVI + + G PR ++ + +
Sbjct: 1 MRPSGRTASQIRPITFTRQFTAHAEGSVLVEFGNTKVICTASVIEGVPRFMKGQGK---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+ EY M A + DR + K R+ EI +I + + + L+ + I I
Sbjct: 57 -GWITAEYGMLPRATHTRNDREAARGKQGGRTMEIQRLIGRALRTAVDLKLLGENTITID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G+ P+ +V + S G T + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNFMRAKGLIKTNPLNFMVAAVSVGVYKGTAVADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+Y EDS D+ + ++ K+ +Q A+ +FE++ Q+ G A+ I E ++
Sbjct: 176 DYAEDSNAETDMNI-VMTETGKIIEIQGTAEEAPFSFEEMQQMMELGKHAIREIIDEQKR 234
Query: 230 FL 231
L
Sbjct: 235 VL 236
>gi|431928884|ref|YP_007241918.1| RNAse PH [Pseudomonas stutzeri RCH2]
gi|431827171|gb|AGA88288.1| RNAse PH [Pseudomonas stutzeri RCH2]
Length = 240
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIETGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M +TG+R ++ K R+ EI +I +++ A + + + + +
Sbjct: 58 GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFVDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKALKKRGGLKSGDPIKQMIAAVSVGIYQGEPVLDL 177
Query: 170 NYVEDSAGGPDVTV 183
+Y+EDSA D+ V
Sbjct: 178 DYLEDSAAETDLNV 191
>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
gi|422581679|ref|ZP_16656820.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 240
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQN---KSQQMSDQA 66
R GR ++R +R A+GS + E G+TKVI V V+N + + Q
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 58
Query: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ EY M +TG+R ++ K R+ EI +I +++ A + + + +
Sbjct: 59 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
Query: 123 VLQADGGTRSACINAATLALQDA------------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I A +AL DA G P++ ++ + S G P+LDL+
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLD 178
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 179 YLEDSAAETDLNV 191
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,667,676,638
Number of Sequences: 23463169
Number of extensions: 142901447
Number of successful extensions: 321324
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3700
Number of HSP's successfully gapped in prelim test: 3938
Number of HSP's that attempted gapping in prelim test: 305424
Number of HSP's gapped (non-prelim): 9909
length of query: 252
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 113
effective length of database: 9,097,814,876
effective search space: 1028053080988
effective search space used: 1028053080988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)