BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025482
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 260 bits (664), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 168/221 (76%), Gaps = 1/221 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ + +LP ++ LL+MD++L + E V++ A + + V
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV 224
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 2/241 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 238
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLL 243
Query: 239 G 239
G
Sbjct: 244 G 244
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 230 bits (587), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G KV+AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E +L H+ PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+++LQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 227 bits (578), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G RLDGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +CSAG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 226 bits (576), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAEEVG 246
Query: 239 G 239
G
Sbjct: 247 G 247
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 226 bits (576), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGRR E+R++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ +D+F
Sbjct: 68 QRPDTAVLRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVA 246
Query: 239 G 239
G
Sbjct: 247 G 247
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 224 bits (572), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 238
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 239 G 239
G
Sbjct: 247 G 247
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ +K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 237
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQEV 245
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 218 bits (555), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 150/227 (66%), Gaps = 1/227 (0%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+S +GLRLDGR+P EMR L+ + G + +ADGSA E+G K++AAVYGPRE+ + +Q
Sbjct: 8 LISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+VR Y+MA FS +R R P DRRS EIS + ++ +E I T PR+ IDIFV+
Sbjct: 68 PDRAVVRFRYNMAPFSVDERKR-PGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR A I+AA++AL DAGI MRD+V +C+AG + +LD Y ED G DV
Sbjct: 127 VLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVP 186
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+ ++P K+TLLQMD + F+ ++LA +GCK V R K
Sbjct: 187 LAMMPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALK 233
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGR+P EMR ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A+
Sbjct: 14 GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL L PR+ ID+F++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + +LDLN ED G D+ V ++P
Sbjct: 133 AGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+L +V LLQ++ + F +++A +G + + N +E
Sbjct: 193 SLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKE 231
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 76 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ + ++
Sbjct: 135 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMM 194
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
P+L++VTL Q++ + + F LA++G + N RE K
Sbjct: 195 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 237
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR P ++R +R E+G ++ ADGSA+ E G T+VIAAVYGPRE + + D+A++
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y MA FST +R + P RR E+S VIR+ +EA +++ L PR+ ID++++VLQ+DG
Sbjct: 84 RCRYHMAPFSTAER-KTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDG 142
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR+A I AA+LAL DAGI MRD+V + G ++ +LD++ +ED+ D+ V + P+
Sbjct: 143 GTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPS 202
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVD 236
LDKV LLQ++ L + F ++LA +G + + N +E +K++ ++V+
Sbjct: 203 LDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVE 252
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 201 bits (511), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 146/234 (62%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAG+ MRD+V S G ++ +LDLN +ED G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + TLLQ+D + F + + LAI+G + V R+ K++ IA DI G
Sbjct: 192 NLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYMTIAEDIYG 245
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR P +MR+++ ++G V+ ADGSAV G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + TLLQ+D F + + LA++G + V RE K++ IA +I G
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALKNKYMAIAEEIYG 245
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 139/218 (63%), Gaps = 1/218 (0%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R L+ E G + +ADGS+ E G K++ AVYGPRE Q + Q D+A++
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y+MA FS +R R P DRRS EIS + + + ++ PRS ID+F++VL+A+G
Sbjct: 76 RCRYNMAPFSVEERKR-PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR A I AA++AL DAGIPMRD+V +C+AG + +LDL+ ED G DV V ILP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
++TLLQ D L FE + LA+EGC + +E
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKE 232
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G ++ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK--FLLIAVDIVG 239
L + TLLQ+D + + + LA++G + V R+ K ++ IA +I G
Sbjct: 192 NLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYMAIAEEIYG 245
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 145/219 (66%), Gaps = 4/219 (1%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
++ +GLRLDGRR E+R ++ E+G +++ADGS E G K++ V+GPRE + Q
Sbjct: 10 LITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQR 69
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+D A++R Y+MA+FS DR R P RRS EIS V R+ E I+ L P++ IDIFV+
Sbjct: 70 ADSAVIRYRYNMASFSVEDRAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR+A INA+++AL DAGIPM+ ++TSC+ G ++ +LDLN ED+ G D
Sbjct: 129 VLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFP 188
Query: 183 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
V + T D ++TL+QMD L + + ++L +GCK +
Sbjct: 189 VAM--TQDGEITLIQMDGNLTPDEIKQGLELVKKGCKEI 225
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 142/225 (63%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ E G + +ADGSA E G K+I VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R R P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAVVKARYNMAAFSVDERKR-PGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A + AAT+AL DAGIPMRD+V C+AG ++ +LDL+ ED+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEAD 187
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+ + I+P ++ LLQMD + + F + + IE K ++ R
Sbjct: 188 IPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQR 232
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E I+ PRS+ID+FV++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ +G +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + TLLQ+D + F + LA+ G + V R+ K++ IA +I G
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYMSIAEEIYG 245
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 139/220 (63%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G R DGR E R++ + G + ADGS+ E G+ K++ V+GPR+V K
Sbjct: 8 MVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SDTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V
Sbjct: 187 MPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLV 226
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 146/222 (65%), Gaps = 1/222 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR+ E+R ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A
Sbjct: 14 GLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKAS 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL +L PR+ IDIF++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + + +LDLN ED G D+ + +LP
Sbjct: 133 AGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 229
+L +V LLQ++ + + F +LA +G ++ +E K
Sbjct: 193 SLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 141/226 (62%), Gaps = 1/226 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ + G + +ADGSA E G K++ VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R ++P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAIVKARYNMAAFSVDER-KRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A + AAT+AL DAG+PMRD+V C+AG ++ +LDL+ ED+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEAD 187
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
+ + I+P + L+QMD + + M + E K ++ RE
Sbjct: 188 IPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQRE 233
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 6/236 (2%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGR+ E+R ++ E + +ADGS EMG KVIAAV+GPREV + Q +A
Sbjct: 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R R P DRRS EIS V ++ EA I+ L PRS IDIFV+VLQA
Sbjct: 74 IIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R+AC+NAA++AL DAG+PM+ ++TS + G + +LD ED+ G D+ L
Sbjct: 133 DAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFL 192
Query: 187 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKFLLIAVDI 237
++ + LLQMD ++ + + ++LA +G + RE +R+++ + ++
Sbjct: 193 IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEM 248
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E + S+
Sbjct: 1 MSIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESK-ASK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STEIS ++ + E+ ILT PRSQIDIF
Sbjct: 60 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G + + P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADV 219
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 145/234 (61%), Gaps = 2/234 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E +L PRS+ID+F++++QAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ +LDLN +ED+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 239
L + LLQ+D F + LA++G + V R+ K++ IA +I G
Sbjct: 192 NLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALKNKYMSIAEEIYG 245
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 181 bits (458), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 140/227 (61%), Gaps = 2/227 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR P ++R +R ++G + ADGSA+ E G T+V+AAVYGPRE + + D+A
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y MA FST +R + P RR E+S V+R+ +E +L PR+ ID+F++VLQA
Sbjct: 74 ALRVRYHMAPFSTDER-KSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+A + AA+LAL DAGIPMR +V + G + ++D++ +ED G D+ V
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLL 232
P + ++TLLQ++ L F + +A+ V +E +RK L
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYL 239
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ +E R++ G + A+GSA E G+ K++A ++GPR+V K ++ +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y M+ FS +R +KP RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRCRYHMSPFSVSER-KKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG+R A + AA++AL DAGIPMRD+V++C+AG + T +LD+N ED AG D+ VG +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
LD+VTL+Q+D L + + +AI+GCK V
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQV 226
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADV 219
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 1/225 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S EGLR DGRR EMR + IG +GSA E+GNTKV+ V GP E KS+
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI ++
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLDLN +E+SA
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW- 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
+TV +L + KV +Q++ + + E VM +AI G + + N ++
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQ 227
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 230
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 124/231 (53%), Gaps = 13/231 (5%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G+R +G ++R + A G V++A GSA E GNTK+I +VYGP+E + + +
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C++ +A FS R +G ++S + +++ + H PRSQID+ V VL
Sbjct: 88 TGRLVCDFRLAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMVL 146
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD---- 180
+ DG + + A++AL DAGI M DIV C+ + L+D +Y E+ +
Sbjct: 147 ENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGD 206
Query: 181 ----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
VT+ +LP L++V+ L D ++ +T + M+ ++GC + +++
Sbjct: 207 NQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQA 257
>sp|A5G3S1|RNPH_GEOUR Ribonuclease PH OS=Geobacter uraniireducens (strain Rf4) GN=rph
PE=3 SV=1
Length = 238
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 28/232 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R+++ + A+GS + E G+TKVI A+V G P ++ K
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + +L+ + I
Sbjct: 57 -GWVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA +P+++ V + S G ++ TPLLDL
Sbjct: 116 CDVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCK 218
NYVEDS+ D+ ++ + ++ +Q A+ T E D M+ LAI G K
Sbjct: 176 NYVEDSSAEVDMNF-VMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIK 226
>sp|B9M3E3|RNPH_GEOSF Ribonuclease PH OS=Geobacter sp. (strain FRC-32) GN=rph PE=3 SV=1
Length = 238
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 28/232 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R++R + A+GS + E G+TKVI A+V P ++ K
Sbjct: 1 MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + L+ I I
Sbjct: 57 -GWVTAEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA +P+R+ V + S G + +LDL
Sbjct: 116 CDVIQADGGTRTASITGAYVALCDALQGLVAKGELSSLPIREAVAAVSVGIVGGVAVLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCK 218
NYVEDSA D+ ++ + ++ +Q A+ T E D M+ LA++G K
Sbjct: 176 NYVEDSAAEVDMNF-VMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIK 226
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 4 VSPEGLRLDGRR---PTEMRQLRAEIGNVAKADGSAVFEMGN--TKVIAAVYGPREVQNK 58
+S EG + GRR P+E R + G +++A GSA E G+ TKV+ AV+GPRE
Sbjct: 22 LSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMG 81
Query: 59 SQQMSDQALVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ + + C+ A FS G + L +++++E + PR+++
Sbjct: 82 GERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEV 141
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVE 173
++V VL+ G A ++ A+LAL DAGI M D+ C L+ P LLD + E
Sbjct: 142 IVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCG---LSRGPGGELLLDPDDDE 198
Query: 174 DSAG-GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
+ AG G +++ +LPTL++V+ L + + E+ ++L +EGC+
Sbjct: 199 EEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQ 244
>sp|A6VEE1|RNPH_PSEA7 Ribonuclease PH OS=Pseudomonas aeruginosa (strain PA7) GN=rph PE=3
SV=1
Length = 239
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|P50597|RNPH_PSEAE Ribonuclease PH OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=rph PE=1 SV=2
Length = 239
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|Q02E28|RNPH_PSEAB Ribonuclease PH OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=rph PE=3 SV=1
Length = 239
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|B7V5M5|RNPH_PSEA8 Ribonuclease PH OS=Pseudomonas aeruginosa (strain LESB58) GN=rph
PE=3 SV=1
Length = 239
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|Q11B42|RNPH_MESSB Ribonuclease PH OS=Mesorhizobium sp. (strain BNC1) GN=rph PE=3 SV=1
Length = 238
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+P EMR + E G A+GS + G+T V+ +V + S + V
Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI ++ +++ + I + QI + VL
Sbjct: 60 TAEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVL 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D M +D V + S G + TP+LDL+Y
Sbjct: 120 QADGGTRTAAITGGFVALHDCLSWMQARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA D ++ + +Q A+ F ++++LA +G
Sbjct: 180 EDSAAETDANF-VMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKG 225
>sp|B1VVV6|RNPH_STRGG Ribonuclease PH OS=Streptomyces griseus subsp. griseus (strain JCM
4626 / NBRC 13350) GN=rph PE=3 SV=1
Length = 245
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNYV 172
ADGGTR+A I A +AL DA P+ D V + S G ++ TPLLDL Y
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYE 181
Query: 173 EDSAGGPDVTV 183
ED D+ V
Sbjct: 182 EDVRAETDMNV 192
>sp|Q6A759|RNPH_PROAC Ribonuclease PH OS=Propionibacterium acnes (strain KPA171202 / DSM
16379) GN=rph PE=3 SV=2
Length = 244
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 62
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 123 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 182
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGC 217
EDS D+ V + D V + P N +++ LA GC
Sbjct: 183 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGC 229
>sp|B8I1A8|RNPH_CLOCE Ribonuclease PH OS=Clostridium cellulolyticum (strain ATCC 35319 /
DSM 5812 / JCM 6584 / H10) GN=rph PE=3 SV=1
Length = 240
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + V
Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I I V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I + +AL DA +P+ V + S G +N LLDL Y+E
Sbjct: 121 QADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEELLDLCYIE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF 206
DS +V + ++ T DK +++ A ++F
Sbjct: 181 DS--NAEVDMNVIKT-DKGEFIEIQATGEKSSF 210
>sp|C1DCK5|RNPH_LARHH Ribonuclease PH OS=Laribacter hongkongensis (strain HLHK9) GN=rph
PE=3 SV=1
Length = 238
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 20/239 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R +E+R +R A+GS + E G+TKVI V + Q V
Sbjct: 1 MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKG-QGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I+ A +AL DA G+ P+RD V + S G ++ P+LDL+Y E
Sbjct: 120 QADGGTRTASISGAWVALADAIDGLMAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYTE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFED---VMQLAIEGCKAVANYIREVRK 229
DS D+ V ++ +Q A+ + ED ++ LA EG +A+ + R+
Sbjct: 180 DSGCDTDMNV-VMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQAARQ 237
>sp|Q82XJ4|RNPH_NITEU Ribonuclease PH OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rph PE=3 SV=1
Length = 241
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R + R P +MR +R V A+GS + E G T+VI +V + + Q +
Sbjct: 3 RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKV-PPFLKGAGQGWLT 61
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STG+RM+ K K R+ EI +I + + + + + I + V+Q
Sbjct: 62 AEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA P+RD V + S G L PLLDL+Y+ED
Sbjct: 122 ADGGTRTASITGAFVALYDAIDYLRAERMISQNPIRDHVAAVSVGILKGQPLLDLDYLED 181
Query: 175 SAGGPDVTV 183
S D+ V
Sbjct: 182 SGCDTDLNV 190
>sp|B5YFY8|RNPH_THEYD Ribonuclease PH OS=Thermodesulfovibrio yellowstonii (strain ATCC
51303 / DSM 11347 / YP87) GN=rph PE=3 SV=1
Length = 236
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 23/235 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+ E+R ++ E + ADGS + E+GNT+VI ++NK + DQ
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTA----SIENKVPPFLKDQKK 56
Query: 66 ALVRCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM R+ R R+ EI +I +T+ A + + I I
Sbjct: 57 GWITAEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDC 116
Query: 122 QVLQADGGTRSACINAATLAL-------QDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
V++ADGGTR+A I +AL +AG+ P++D + + S G + P LDL
Sbjct: 117 DVIEADGGTRTASITGGYIALVEAVKKAMNAGMITENPIKDSIAAISVGIVLGEPRLDLC 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
Y EDS D+ + ++ K +Q A++ + E+++QL K + IR
Sbjct: 177 YAEDSQAEVDMNI-VMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIR 230
>sp|B8IFR7|RNPH_METNO Ribonuclease PH OS=Methylobacterium nodulans (strain ORS2060 / LMG
21967) GN=rph PE=3 SV=1
Length = 237
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 93/193 (48%), Gaps = 28/193 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY----GPREVQNKSQQMSD 64
+R R P E+R++ E G A+GS + G T+V+ GP ++ S
Sbjct: 1 MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRG-----SG 55
Query: 65 QALVRCEYSMANFSTGDRMR------KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + EY+M +T +R R KP G R+ EI +I +++ A + + QI
Sbjct: 56 KGWITAEYAMLPRATHERNRREVNAGKPSG--RTQEIQRLIGRSLRAVVNLPAIGERQIV 113
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLL 167
I VLQADGGTR+A I A +AL + PMRD V + S G TP+L
Sbjct: 114 IDCDVLQADGGTRTASITGAWVALHECFTWMRSRSIISVDPMRDHVAAVSCGIHKGTPIL 173
Query: 168 DLNYVEDSAGGPD 180
DL+Y EDSA D
Sbjct: 174 DLDYAEDSAAETD 186
>sp|Q98DN6|RNPH_RHILO Ribonuclease PH OS=Rhizobium loti (strain MAFF303099) GN=rph PE=3
SV=1
Length = 238
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD----------AGIP--MRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D A + ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA G D ++ + +Q A+ + F ++M LA +G
Sbjct: 180 EDSAAGTDANF-VMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKG 225
>sp|Q2NAJ7|RNPH_ERYLH Ribonuclease PH OS=Erythrobacter litoralis (strain HTCC2594) GN=rph
PE=3 SV=1
Length = 237
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 25/223 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R GR P EMR + E G A+GS + G+TKV+ A+V P ++ K Q
Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQ---- 56
Query: 65 QALVRCEYSM---ANFSTGDR-MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM A + G+R + K R+ EI +I +++ A + + QI +
Sbjct: 57 -GWVTGEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I+ A +AL+ A G+ P+ + + S G N TP+LDL
Sbjct: 116 CDVIQADGGTRTASISGAWIALRLAVSGLMEQGQIKDDPITGKIAAISCGIYNGTPVLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
+Y EDS D +L K+ Q A+ T E +M+L
Sbjct: 176 DYAEDSNADADANF-VLIEGGKIAEAQATAEGATYDEEGLMRL 217
>sp|Q8E9L4|RNPH_SHEON Ribonuclease PH OS=Shewanella oneidensis (strain MR-1) GN=rph PE=3
SV=1
Length = 237
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 29/238 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I + + AC+ + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G N + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227
YVEDSA D+ V ++ K+ +Q A+ T E++++L N IRE+
Sbjct: 176 EYVEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFTHEELIEL----LGLAKNSIREI 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,768,482
Number of Sequences: 539616
Number of extensions: 3453956
Number of successful extensions: 11231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 7829
Number of HSP's gapped (non-prelim): 1746
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)