Query 025482
Match_columns 252
No_of_seqs 166 out of 1250
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnr_B Probable exosome comple 100.0 1E-55 3.4E-60 378.3 29.4 230 1-231 8-237 (240)
2 2nn6_B Exosome complex exonucl 100.0 2.7E-55 9.3E-60 377.5 28.9 234 1-234 8-242 (249)
3 2po1_A Probable exosome comple 100.0 5.6E-55 1.9E-59 375.5 29.0 233 1-234 8-240 (249)
4 2je6_B RRP41, exosome complex 100.0 1.9E-54 6.4E-59 372.5 28.7 236 2-238 13-248 (250)
5 2wp8_B Exosome complex compone 100.0 2.5E-54 8.5E-59 370.9 27.5 233 1-234 4-238 (246)
6 3m7n_D Probable exosome comple 100.0 5.4E-54 1.9E-58 370.5 27.2 229 2-232 10-241 (258)
7 2nn6_F MTR3, exosome component 100.0 2E-51 6.7E-56 357.7 20.3 232 2-234 19-265 (272)
8 3dd6_A Ribonuclease PH; exorib 100.0 4.3E-50 1.5E-54 345.7 26.2 224 6-231 8-250 (255)
9 3b4t_A Ribonuclease PH; RNAse, 100.0 9.5E-50 3.3E-54 345.3 26.3 224 6-231 3-245 (262)
10 1oys_A Ribonuclease PH; transf 100.0 4.3E-50 1.5E-54 344.4 21.9 222 9-232 1-241 (245)
11 2nn6_D Exosome complex exonucl 100.0 3.5E-49 1.2E-53 337.1 27.1 217 5-231 12-233 (237)
12 1r6l_A Ribonuclease PH; beta-a 100.0 3.9E-49 1.4E-53 337.2 26.3 219 9-229 2-238 (239)
13 1udn_A Ribonuclease PH, RNAse 100.0 4.3E-49 1.5E-53 339.9 26.4 220 9-230 1-238 (255)
14 2po1_B Probable exosome comple 100.0 4.1E-48 1.4E-52 337.6 28.3 222 6-232 23-276 (277)
15 3m7n_G Probable exosome comple 100.0 1.3E-47 4.5E-52 331.4 27.3 217 6-226 19-258 (259)
16 2je6_A RRP42, exosome complex 100.0 1.5E-47 5.1E-52 334.1 26.4 221 4-229 24-276 (277)
17 2wnr_A Probable exosome comple 100.0 2.2E-47 7.5E-52 332.1 27.0 220 5-229 20-270 (271)
18 2nn6_C Exosome complex exonucl 100.0 9.3E-48 3.2E-52 335.6 20.7 221 6-230 21-274 (278)
19 3hkm_A OS03G0854200 protein; R 100.0 4.2E-47 1.4E-51 325.3 23.8 213 7-231 2-233 (246)
20 2nn6_E Exosome complex exonucl 100.0 2.2E-46 7.4E-51 330.8 21.8 224 6-233 33-293 (305)
21 2nn6_A Polymyositis/scleroderm 100.0 1.1E-45 3.6E-50 331.7 25.0 224 5-235 35-293 (358)
22 2wp8_A Exosome complex compone 100.0 3E-45 1E-49 323.6 23.8 225 6-237 20-292 (305)
23 3gme_A Polyribonucleotide nucl 100.0 2.1E-44 7.1E-49 336.2 23.6 227 2-231 307-544 (549)
24 3u1k_A Polyribonucleotide nucl 100.0 2.4E-43 8.1E-48 335.1 24.1 226 2-231 311-557 (630)
25 4aid_A Polyribonucleotide nucl 100.0 3.1E-43 1.1E-47 337.3 23.8 226 3-231 324-560 (726)
26 1e3p_A Guanosine pentaphosphat 100.0 5.7E-43 1.9E-47 337.9 24.2 227 2-231 348-589 (757)
27 3cdi_A Polynucleotide phosphor 100.0 1.6E-42 5.4E-47 333.7 24.4 227 2-231 313-550 (723)
28 3krn_A Protein C14A4.5, confir 100.0 6.4E-45 2.2E-49 307.7 -0.0 204 16-231 2-208 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 3E-35 1E-39 279.5 23.8 213 18-238 13-235 (630)
30 3gme_A Polyribonucleotide nucl 100.0 2.1E-30 7.3E-35 241.9 26.2 212 19-238 13-234 (549)
31 4aid_A Polyribonucleotide nucl 100.0 7.5E-30 2.6E-34 244.8 25.8 212 18-237 26-247 (726)
32 3cdi_A Polynucleotide phosphor 100.0 1.6E-29 5.6E-34 243.4 24.8 210 20-237 20-239 (723)
33 1e3p_A Guanosine pentaphosphat 100.0 2.1E-29 7.2E-34 243.4 23.8 212 19-237 36-274 (757)
34 2k9i_A Plasmid PRN1, complete 35.5 35 0.0012 20.4 3.2 35 200-234 15-49 (55)
35 1ybx_A Conserved hypothetical 32.7 1.6E+02 0.0054 22.1 7.4 58 175-233 72-134 (143)
36 1xpp_A TA1416, DNA-directed RN 28.9 1.6E+02 0.0055 21.1 6.4 42 190-231 62-103 (115)
37 2kel_A SVTR protein, uncharact 23.2 40 0.0014 21.0 1.7 35 201-235 20-54 (56)
38 2cpg_A REPA protein, transcrip 20.2 75 0.0026 18.0 2.5 34 200-233 8-41 (45)
No 1
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1e-55 Score=378.31 Aligned_cols=230 Identities=43% Similarity=0.732 Sum_probs=212.6
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcc
Q 025482 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (252)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~ 80 (252)
||+++++|.|+|||+++|+||+++++|++++++|||++++|+|+|+|+|+||.+...+..+.|++|.++++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~ 87 (240)
T 2wnr_B 8 DQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVE 87 (240)
T ss_dssp -------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSS
T ss_pred eEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcC
Confidence 68999999999999999999999999999999999999999999999999998876655567899999999999999998
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeee
Q 025482 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~ 160 (252)
+++ .++++.++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|+|+||+++|+++|+++
T Consensus 88 ~~~-~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~ 166 (240)
T 2wnr_B 88 ERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGK 166 (240)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred Ccc-CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEE
Confidence 776 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231 (252)
Q Consensus 161 ~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 231 (252)
+++.+++||+.+||..+++.++|++++..++|+++++.|.++.+++.++++.|.++|+++.+.+++++++.
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 167 VGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp SSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999976889999999999999999999999999999999999999998764
No 2
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.7e-55 Score=377.47 Aligned_cols=234 Identities=51% Similarity=0.872 Sum_probs=218.0
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccc-cccCCCceEEEEEEeecCCCc
Q 025482 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQQMSDQALVRCEYSMANFST 79 (252)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~-~~~~~~~g~l~v~v~~~~~~~ 79 (252)
||+++++|.|+|||+++|+||+++++|++++++|||++++|+|+|+|+|+||.+.+.+ ..+.|++|.++++|+++|+++
T Consensus 8 ~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~ 87 (249)
T 2nn6_B 8 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFST 87 (249)
T ss_dssp ---CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTS
T ss_pred hhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcc
Confidence 6899999999999999999999999999999999999999999999999999775433 224689999999999999999
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEee
Q 025482 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159 (252)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~ 159 (252)
++++++++++.++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g 167 (249)
T 2nn6_B 88 GERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAG 167 (249)
T ss_dssp SSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEE
T ss_pred cccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEE
Confidence 98876778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025482 160 YLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIA 234 (252)
Q Consensus 160 ~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 234 (252)
++++.+++||+.+||..+++.++|+++++.++|+++++.|+++.+++.++++.|.++|+++.+.+++++++....
T Consensus 168 ~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 242 (249)
T 2nn6_B 168 FVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 242 (249)
T ss_dssp EETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999975688999999999999999999999999999999999999999987543
No 3
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=5.6e-55 Score=375.52 Aligned_cols=233 Identities=47% Similarity=0.758 Sum_probs=220.1
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcc
Q 025482 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (252)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~ 80 (252)
||+++++|.|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+||.|...+..+.|++|.|+++|++.||+++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~ 87 (249)
T 2po1_A 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVE 87 (249)
T ss_dssp -CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSS
T ss_pred eEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccc
Confidence 68899999999999999999999999999999999999999999999999998876656677899999999999999998
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeee
Q 025482 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~ 160 (252)
+++ .+.+++++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|+|||++++|+++|+++
T Consensus 88 ~~~-~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 166 (249)
T 2po1_A 88 ERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK 166 (249)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred ccc-CCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEE
Confidence 765 4568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025482 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIA 234 (252)
Q Consensus 161 ~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 234 (252)
+++.+++||+.+||..+++.++|++++..++|+++++.|.++.+++.++++.|.++++++.+.+++++++....
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 240 (249)
T 2po1_A 167 IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240 (249)
T ss_dssp ETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999976888999999999999999999999999999999999999999877443
No 4
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=1.9e-54 Score=372.49 Aligned_cols=236 Identities=41% Similarity=0.726 Sum_probs=220.0
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCccc
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~ 81 (252)
|+++++|.|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+||.+...+..+.|++|.|+|+|++.|+++++
T Consensus 13 ~~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 92 (250)
T 2je6_B 13 KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDE 92 (250)
T ss_dssp CSBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSS
T ss_pred ceecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCC
Confidence 78999999999999999999999999999999999999999999999999987665556678999999999999999988
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeeee
Q 025482 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (252)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~ 161 (252)
++ .+++++++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+++|||++++|+++|++++
T Consensus 93 ~~-~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~ 171 (250)
T 2je6_B 93 RK-NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA 171 (250)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE
T ss_pred cc-CCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE
Confidence 76 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025482 162 NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVDIV 238 (252)
Q Consensus 162 ~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 238 (252)
++.+++|||.+||..+++.++|+++++.++|+++++.|.++.+++.++++.|.+.++++.+++++++++....+.-.
T Consensus 172 ~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~~ 248 (250)
T 2je6_B 172 DGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEE 248 (250)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-----
T ss_pred CCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999767889999999999999999999999999999999999999998875555433
No 5
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-54 Score=370.90 Aligned_cols=233 Identities=37% Similarity=0.591 Sum_probs=206.1
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCC-CeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCc
Q 025482 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79 (252)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a-~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~ 79 (252)
||+++++|.|+|||+++|+|++++++|+++++ +|||++++|+|+|+|+|+||.+...+..+.|++|.++++|++.|+++
T Consensus 4 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~ 83 (246)
T 2wp8_B 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSK 83 (246)
T ss_dssp CCSSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----
T ss_pred hhhhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccc
Confidence 79999999999999999999999999999999 99999999999999999999875444556689999999999999999
Q ss_pred ccccCC-CCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEe
Q 025482 80 GDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (252)
Q Consensus 80 ~~~~~~-~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~ 158 (252)
+++.++ +++++++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|+||||+++|+++++
T Consensus 84 ~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~ 163 (246)
T 2wp8_B 84 FERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISV 163 (246)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEE
T ss_pred ccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEE
Confidence 887654 6778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025482 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIA 234 (252)
Q Consensus 159 ~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 234 (252)
+++++.+++||+.+|| .+++.++|++.+..++|+++++.|+++.+++.++++.|.++++++.+.+++++++....
T Consensus 164 g~~~~~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 238 (246)
T 2wp8_B 164 GLYDTTPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238 (246)
T ss_dssp EEETTEEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCEEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999866789999999999999999999999999999999999999999987543
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=5.4e-54 Score=370.47 Aligned_cols=229 Identities=42% Similarity=0.683 Sum_probs=215.7
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCccc
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~ 81 (252)
++|. +|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.|...+..+.|++|.|+++|++.|+++++
T Consensus 10 ~~i~-~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~ 88 (258)
T 3m7n_D 10 KLIV-DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE 88 (258)
T ss_dssp CSEE-TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS
T ss_pred HHHh-cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc
Confidence 5666 899999999999999999999999999999999999999999999988766555678999999999999999987
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeeee
Q 025482 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (252)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~ 161 (252)
++ ++++++++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|+||||+++|++++++++
T Consensus 89 r~-~~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i 167 (258)
T 3m7n_D 89 RK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA 167 (258)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE
T ss_pred cc-CCCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE
Confidence 64 45789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCCchhhhcCCCeEEEEEcCCC---CcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 162 NSTPLLDLNYVEDSAGGPDVTVGILPTL---DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 232 (252)
Q Consensus 162 ~~~~l~DPt~~Ee~~~~~~l~v~~~~~~---~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~ 232 (252)
++.+++||+.+|+..+++.++|++++.. ++|+++++.|+++.+++.++++.|.+.|+++.+.+++++++..
T Consensus 168 ~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 241 (258)
T 3m7n_D 168 DGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRY 241 (258)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999975677 8999999999999999999999999999999999999998753
No 7
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2e-51 Score=357.72 Aligned_cols=232 Identities=27% Similarity=0.455 Sum_probs=204.7
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCccccccccc-----------CCCceEEEE
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-----------MSDQALVRC 70 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~-----------~~~~g~l~v 70 (252)
+|+.+++.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.+...+. .++++.++|
T Consensus 19 ~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 98 (272)
T 2nn6_F 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLC 98 (272)
T ss_dssp ----------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEE
T ss_pred ccccccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEE
Confidence 456688999999999999999999999999999999999999999999999876643220 467899999
Q ss_pred EEeecCCCcccccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCee
Q 025482 71 EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMR 150 (252)
Q Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~ 150 (252)
+|++.|+++++++ .+++++++.+++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+++|||++
T Consensus 99 ~~~~~p~a~~~~~-~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~ 177 (272)
T 2nn6_F 99 DFRRAPFAGRRRR-APPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMY 177 (272)
T ss_dssp EEEECTTSSSSCC-CSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBS
T ss_pred EEEecCCCcCCcc-CCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccc
Confidence 9999999998765 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeee---eCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025482 151 DIVTSCSAGY---LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPT-NTFEDVMQLAIEGCKAVANYIRE 226 (252)
Q Consensus 151 ~~~~avs~~~---~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~-~~l~~~l~~A~~~~~~i~~~i~~ 226 (252)
++++++++++ .++.+++||+.+||..+++.++|++++..++|+++++.|.++. +++.++++.|.+.++++.+++++
T Consensus 178 ~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 257 (272)
T 2nn6_F 178 DLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQ 257 (272)
T ss_dssp SCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECCSSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 8889999999999999999999998888999999999999999 99999999999999999999999
Q ss_pred HHHHHHhh
Q 025482 227 VRKFLLIA 234 (252)
Q Consensus 227 ~l~~~~~~ 234 (252)
++++....
T Consensus 258 ~l~~~~~~ 265 (272)
T 2nn6_F 258 SLVRAARR 265 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99877443
No 8
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=4.3e-50 Score=345.69 Aligned_cols=224 Identities=28% Similarity=0.385 Sum_probs=206.3
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccC-
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR- 84 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~- 84 (252)
.+..|.|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+ ++...|++|.|+++|++.|++++++.+
T Consensus 8 ~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~P~a~~~~~~R 86 (255)
T 3dd6_A 8 HHHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP-PFMRGEGKGWVTAEYAMIPRATEQRTIR 86 (255)
T ss_dssp ---CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCC-GGGTTSSCCEEEEEEEECTTSSSSCCCC
T ss_pred ccccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCC-CCCCCCCceEEEEEEEECCCcccccccc
Confidence 466899999999999999999999999999999999999999999986643 344568999999999999999988643
Q ss_pred ---CCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhC-----------CCCee
Q 025482 85 ---KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMR 150 (252)
Q Consensus 85 ---~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~-----------gIp~~ 150 (252)
.|++++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+++ +|||+
T Consensus 87 e~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~ 166 (255)
T 3dd6_A 87 ESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVK 166 (255)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCcc
Confidence 2688999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ceeeEEEeeeeCCeeE-EeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 151 DIVTSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 226 (252)
Q Consensus 151 ~~~~avs~~~~~~~~l-~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~ 226 (252)
++|+++|++++++.++ +|||.+||..++..++|+ +++.++|+++++.| .++.+++.++++.|.+.++++.+++++
T Consensus 167 ~~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va-~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 245 (255)
T 3dd6_A 167 DYLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVI-MTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKE 245 (255)
T ss_dssp SCEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEE-EETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEE-EcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 999999999999999998 58899999999975 599999999999999999999999999
Q ss_pred HHHHH
Q 025482 227 VRKFL 231 (252)
Q Consensus 227 ~l~~~ 231 (252)
++++.
T Consensus 246 ~l~~~ 250 (255)
T 3dd6_A 246 ALGDI 250 (255)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 98765
No 9
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.5e-50 Score=345.33 Aligned_cols=224 Identities=28% Similarity=0.387 Sum_probs=205.3
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCC
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (252)
..|+|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+.. ...+++|+|+|+|++.|++++++.++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~v~~~~~p~a~~~~~~R 81 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRW-RKATGLGWLTAEYAMLPSATHSRSDR 81 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC-----CCSCCEEEEEEEECGGGSSSCCCC
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCc-cCCCCceEEEEEEEeCCCcccccccc
Confidence 46899999999999999999999999999999999999999999998764432 23378899999999999999876432
Q ss_pred ----CCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhC------------CCCe
Q 025482 86 ----PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA------------GIPM 149 (252)
Q Consensus 86 ----~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~------------gIp~ 149 (252)
|++++++.+++++|+++|+++++++.||+++|+|+++||++|||+++|+++|+++||+++ +|||
T Consensus 82 e~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~ 161 (262)
T 3b4t_A 82 ESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPL 161 (262)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCB
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcc
Confidence 678999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eceeeEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 150 RDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 226 (252)
Q Consensus 150 ~~~~~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~ 226 (252)
+++|+++|++++++.+++|||.+||..+++.++|++ ++.++|+++++.| .++.+++.++++.|.+.++++.+++++
T Consensus 162 ~~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 240 (262)
T 3b4t_A 162 SCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVA-TDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRD 240 (262)
T ss_dssp CSCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEEEECCEEEECCCHHHHhccCceEEEEE-cCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985 7788999999986 699999999999999999999999999
Q ss_pred HHHHH
Q 025482 227 VRKFL 231 (252)
Q Consensus 227 ~l~~~ 231 (252)
++++.
T Consensus 241 ~l~~~ 245 (262)
T 3b4t_A 241 ALALP 245 (262)
T ss_dssp HHTSC
T ss_pred HHhcc
Confidence 98754
No 10
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=4.3e-50 Score=344.37 Aligned_cols=222 Identities=29% Similarity=0.371 Sum_probs=187.1
Q ss_pred CCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccC----
Q 025482 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (252)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~---- 84 (252)
.|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+. ....+++|.++++|++.|++++++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~ 79 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPP-FLRGGGKGWITAEYSMLPQATNQQTIQESS 79 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCG-GGTTSCCCEEEEEEEC--------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCC-ccCCCCceEEEEEEEeCCCcCccccccccc
Confidence 4999999999999999999999999999999999999999999876543 23457899999999999999987642
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCC-----------CCeecee
Q 025482 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (252)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~g-----------Ip~~~~~ 153 (252)
.|++++++++++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|++ +||+++|
T Consensus 80 ~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v 159 (245)
T 1oys_A 80 KGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFL 159 (245)
T ss_dssp -----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCE
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCce
Confidence 35789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEeeeeCCeeE-EeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 154 TSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRK 229 (252)
Q Consensus 154 ~avs~~~~~~~~l-~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~ 229 (252)
+++|++++++.++ +||+.+||..+++.++|++ ++.|+|+++++.| +++.+++.++++.|.++++++.+.++++++
T Consensus 160 ~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 238 (245)
T 1oys_A 160 AAISVGIDKEQGILLDLNYEEDSSAEVDMNVIM-TGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHHEEEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEECCEEEEecCCHHHHhcCCCcEEEEE-cCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998887 9999999999999999985 8889999999975 699999999999999999999999999988
Q ss_pred HHH
Q 025482 230 FLL 232 (252)
Q Consensus 230 ~~~ 232 (252)
+..
T Consensus 239 ~~~ 241 (245)
T 1oys_A 239 DSL 241 (245)
T ss_dssp ---
T ss_pred hhh
Confidence 763
No 11
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.5e-49 Score=337.10 Aligned_cols=217 Identities=25% Similarity=0.367 Sum_probs=185.9
Q ss_pred CCCCCCCCCCCCC----CCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcc
Q 025482 5 SPEGLRLDGRRPT----EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (252)
Q Consensus 5 ~~~~~R~DGR~~~----e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~ 80 (252)
+.+|.|+|||+++ |+|++++++|++++++|||++++|+|+|+|+|+||.+++. ..+.|++|.++++|. |++
T Consensus 12 ~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~-~~~~~~~g~l~~~~~--p~~-- 86 (237)
T 2nn6_D 12 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKV-SKEIFNKATLEVILR--PKI-- 86 (237)
T ss_dssp ---------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC-------CCEEEEEEEE--CSS--
T ss_pred CccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccc-cccCCCcEEEEEEec--CCC--
Confidence 4578899999999 9999999999999999999999999999999999987543 345688999888764 653
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeee
Q 025482 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~ 160 (252)
|+++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++++++
T Consensus 87 -----g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 161 (237)
T 2nn6_D 87 -----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACAL 161 (237)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEE
T ss_pred -----CCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEE
Confidence 356788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 161 L-NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231 (252)
Q Consensus 161 ~-~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 231 (252)
+ ++.+++||+..||+.+.+.++|++.++.++|+++++.|+++.+++.++++.|.++++++.+.+++++++.
T Consensus 162 ~~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 162 DSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp CTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7899999999999999999999976566699999999999999999999999999999999999999876
No 12
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=3.9e-49 Score=337.22 Aligned_cols=219 Identities=31% Similarity=0.437 Sum_probs=201.1
Q ss_pred CCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCC---
Q 025482 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK--- 85 (252)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~--- 85 (252)
.|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+. ....|++|.++++|.+.|+++.++.++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~ 80 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPR-FLKGQGQGWLTAEYGMLPRSTGERNQREAS 80 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSS-CCC---CCEEEEEEEECTTSSSSCCCCHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCC-ccCCCCcEEEEEEEEeCCCccccccccccC
Confidence 4999999999999999999999999999999999999999999876542 223368899999999999999876332
Q ss_pred -CCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCC-----------CCeecee
Q 025482 86 -PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (252)
Q Consensus 86 -~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~g-----------Ip~~~~~ 153 (252)
|++++++++++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|++ +||+++|
T Consensus 81 ~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~ 160 (239)
T 1r6l_A 81 RGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMV 160 (239)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCce
Confidence 6789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 154 TSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRK 229 (252)
Q Consensus 154 ~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~ 229 (252)
+++|++++++.+++|||.+||+.+++.++|++ ++.++++.+++.| +++.+++.++++.|.+.++++.++++++++
T Consensus 161 ~avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 161 AAVSVGIYQGVPVLDLDYLEDSAAETDLNVVM-TDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCEEEECCCHHHHhcCCceEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 7888999999975 599999999999999999999999999875
No 13
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=4.3e-49 Score=339.94 Aligned_cols=220 Identities=28% Similarity=0.385 Sum_probs=204.1
Q ss_pred CCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccC----
Q 025482 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (252)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~---- 84 (252)
+|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+. ....+++|.|+++|.+.|+++.++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~ 79 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPN-WLKGKGQGWITAEYSMLPRATQQRTIRESV 79 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCG-GGTTSSCCEEEEEEEECSCCTTSCCCCSST
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCC-CCCCCCceEEEEEEEcCCCccccccccccC
Confidence 4999999999999999999999999999999999999999999876542 23447899999999999999987633
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCC-----------CCeecee
Q 025482 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (252)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~g-----------Ip~~~~~ 153 (252)
.|++++++++++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|++ +||+++|
T Consensus 80 ~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v 159 (255)
T 1udn_A 80 QGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFV 159 (255)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCce
Confidence 36789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 154 TSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKF 230 (252)
Q Consensus 154 ~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 230 (252)
+++|++++++.+++||+.+||..+++.++|++ +..++++.+++.| .++.+++.++++.|.+.++++.+++++++++
T Consensus 160 ~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~-~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 160 AAVSVGIVNDRILLDLNFEEDSAAQVDMNVVG-TGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEEETTEEEESCCHHHHHTCSEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred eEEEEEEECCEEEECCCHHHHhhCCCCEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 7888999999975 5999999999999999999999999998765
No 14
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=4.1e-48 Score=337.64 Aligned_cols=222 Identities=20% Similarity=0.268 Sum_probs=204.5
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccccCCCceEEEEEEeecCCCcccccC
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~-gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 84 (252)
++|+|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+ +|.++ ..+.|++|.++++|+++|++++.++
T Consensus 23 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~~~~~~~p~a~~~~~- 98 (277)
T 2po1_B 23 KEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP---FPDTPNMGVMTTNVELVPLASPTFE- 98 (277)
T ss_dssp HTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTSCEEEEEEEECGGGCTTCC-
T ss_pred hcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCC---CCCCCCceEEEEEEEeCCCcccccc-
Confidence 689999999999999999999999999999999999999999999 65443 3456899999999999999987653
Q ss_pred CCCCCchHHHHHHHHHHHHHH--hhccccC---CC---ceEEEEEEEEecCCChhhHHHHHHHHHHHhCC----------
Q 025482 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG---------- 146 (252)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p~---~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~g---------- 146 (252)
.|++++++.+++++|+++|++ +|+++.| |+ |.|+|+++||++|||+++|+++|+++||+|+|
T Consensus 99 ~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~ 178 (277)
T 2po1_B 99 PGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET 178 (277)
T ss_dssp SSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTT
T ss_pred CCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCC
Confidence 567889999999999999998 5888876 65 49999999999999999999999999999999
Q ss_pred -----------CCeeceeeEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEee--cCCCHHHHHHHHHHH
Q 025482 147 -----------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQLA 213 (252)
Q Consensus 147 -----------Ip~~~~~~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~--g~~~~~~l~~~l~~A 213 (252)
+||+++|+++|++++++.+++||+.+||..+++.++|++ +..|+|+++++. |+++.+++.++++.|
T Consensus 179 ~~~~~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~lq~~g~~~~~~~~l~~~l~~A 257 (277)
T 2po1_B 179 GEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITT-DETGHISAVQKSEGGAFKLEEVMYAVETA 257 (277)
T ss_dssp CCEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTSCEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred ceeecccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999995 788999999998 479999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025482 214 IEGCKAVANYIREVRKFLL 232 (252)
Q Consensus 214 ~~~~~~i~~~i~~~l~~~~ 232 (252)
.++++++.+.+++++++..
T Consensus 258 ~~~~~~l~~~~~~~l~~~~ 276 (277)
T 2po1_B 258 FKKAEEIRKLILEAVEKAK 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998764
No 15
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1.3e-47 Score=331.39 Aligned_cols=217 Identities=21% Similarity=0.296 Sum_probs=198.7
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCC
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (252)
++|+|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+++...+ ..+.|++|.++++|++.|+++++++ +
T Consensus 19 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p--~~~~~~~g~l~v~~~~~p~a~~~~~-~ 95 (259)
T 3m7n_G 19 RDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP--YPDTPDRGVIIVNAELVPLASPTFE-P 95 (259)
T ss_dssp HTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECC--CSSCTTSCEEEEEEECCTTSCTTCC-S
T ss_pred hcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCC--CCCCCCceEEEEEEEeCCccccccc-C
Confidence 479999999999999999999999999999999999999999999643322 3456889999999999999998764 5
Q ss_pred CCCCchHHHHHHHHHHHHHH--hhccccC---CC---ceEEEEEEEEecCCChhhHHHHHHHHHHHhCCC----------
Q 025482 86 PKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGI---------- 147 (252)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p~---~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gI---------- 147 (252)
|++++++.+++++|+++|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||++++|
T Consensus 96 g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~~ 175 (259)
T 3m7n_G 96 GPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175 (259)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSC
T ss_pred CCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCce
Confidence 78999999999999999999 7888876 75 699999999999999999999999999999999
Q ss_pred ---CeeceeeEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHHHHHHHHHHHHH
Q 025482 148 ---PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQLAIEGCKAVAN 222 (252)
Q Consensus 148 ---p~~~~~~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~~l~~A~~~~~~i~~ 222 (252)
|++++|+++|++++++.+++|||.+||..+++.++|++ +..|+++++++.| .++.+++.++++.|.++++++.+
T Consensus 176 ~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~ 254 (259)
T 3m7n_G 176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITT-DKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLRE 254 (259)
T ss_dssp EECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEE-CTTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEE-eCCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999995 7788999999985 69999999999999999999998
Q ss_pred HHHH
Q 025482 223 YIRE 226 (252)
Q Consensus 223 ~i~~ 226 (252)
++++
T Consensus 255 ~~~~ 258 (259)
T 3m7n_G 255 KFKE 258 (259)
T ss_dssp TTC-
T ss_pred HHhh
Confidence 8765
No 16
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=1.5e-47 Score=334.12 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=201.5
Q ss_pred cCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEc-CcccccccccCCCceEEEEEEeecCCCcccc
Q 025482 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG-PREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (252)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~g-p~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~ 82 (252)
.+++|.|+|||+++|+|++++++|++++++|||++++|+|+|+|+|++ |.+ |..+.|++|.++++|++.|++++++
T Consensus 24 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~---p~~~~~~~g~l~v~~~~~p~a~~~~ 100 (277)
T 2je6_A 24 LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDK---PYEDTPNQGNLIVNVELLPLAYETF 100 (277)
T ss_dssp TGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEEC---CCTTCTTCCEEEEEEEECTTSCTTC
T ss_pred HHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeC---CCCCCCCccEEEEEEEeCCccCccc
Confidence 345899999999999999999999999999999999999999999994 433 2335689999999999999999875
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHh--hccccC---C---CceEEEEEEEEecCCChhhHHHHHHHHHHHhCC--------
Q 025482 83 MRKPKGDRRSTEISLVIRQTMEAC--ILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAG-------- 146 (252)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~~--i~l~~~---p---~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~g-------- 146 (252)
+ .|++++++.+++++|+++|+++ ++++.| | .|.|+|+++||++|||+++|+++|+++||++++
T Consensus 101 ~-~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~ 179 (277)
T 2je6_A 101 E-PGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHS 179 (277)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred c-cCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 4 5688999999999999999994 888887 3 359999999999999999999999999999999
Q ss_pred -------------CCeeceeeEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHH
Q 025482 147 -------------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQ 211 (252)
Q Consensus 147 -------------Ip~~~~~~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~~l~ 211 (252)
+|++++|+++|++++++.+++|||.+||+.+++.++|++ +..|+|+++++.| .++.+++.++++
T Consensus 180 ~~~~~~~~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~ 258 (277)
T 2je6_A 180 NGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSY-TPDLKIVGIQKSGKGSMSLQDIDQAEN 258 (277)
T ss_dssp --CEEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTCCEEEEEEESSSCEEHHHHHHHHH
T ss_pred CcceEeccCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999995 7778999999984 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025482 212 LAIEGCKAVANYIREVRK 229 (252)
Q Consensus 212 ~A~~~~~~i~~~i~~~l~ 229 (252)
.|.++++++.+.++++++
T Consensus 259 ~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 259 TARSTAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998763
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.2e-47 Score=332.08 Aligned_cols=220 Identities=20% Similarity=0.297 Sum_probs=201.2
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccccCCCceEEEEEEeecCCCccccc
Q 025482 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (252)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~-gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~ 83 (252)
+++|+|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+ +|.++ ..+.|++|.++++|++.|+++++++
T Consensus 20 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~v~~~~~p~a~~~~~ 96 (271)
T 2wnr_A 20 INNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP---FPDTPEMGVILTNSELLPMASPTFE 96 (271)
T ss_dssp HHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTCCEEEEEEEECGGGCTTCC
T ss_pred HhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecC---CCCCCCceEEEEEEEeCCccccccc
Confidence 4589999999999999999999999999999999999999999999 55433 2356899999999999999998753
Q ss_pred CCCCCCchHHHHHHHHHHHHHH--hhccccC---CC---ceEEEEEEEEecCCChhhHHHHHHHHHHHhCC---------
Q 025482 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (252)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p~---~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~g--------- 146 (252)
.|++++++.+++++|+++|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||++++
T Consensus 97 -~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~ 175 (271)
T 2wnr_A 97 -PGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDG 175 (271)
T ss_dssp -CSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETT
T ss_pred -CCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 678899999999999999999 5777876 64 49999999999999999999999999999999
Q ss_pred -----------CCeeceeeEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHHHH
Q 025482 147 -----------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQLA 213 (252)
Q Consensus 147 -----------Ip~~~~~~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~~l~~A 213 (252)
+||+++|+++|++++++.+++|||.+||..+++.++|++ +..|+|+++++.| +++.+++.++++.|
T Consensus 176 ~~~~~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~~~i~~i~~~g~~~~~~~~l~~~l~~a 254 (271)
T 2wnr_A 176 EVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGV-TEEGSICAMQKGGEGPLTRDDVLKAVSIA 254 (271)
T ss_dssp EEEEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEEESSSCBCHHHHHHHHHHH
T ss_pred ceeeccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999995 7779999999985 69999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 025482 214 IEGCKAVANYIREVRK 229 (252)
Q Consensus 214 ~~~~~~i~~~i~~~l~ 229 (252)
.++++++.+.++++++
T Consensus 255 ~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 255 VEKVPQLIEYLDKSMT 270 (271)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 18
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=9.3e-48 Score=335.58 Aligned_cols=221 Identities=24% Similarity=0.268 Sum_probs=202.2
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCC
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (252)
++|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++.+. |...+|++|.++++|++.|+++++++ .
T Consensus 21 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~l~v~~~~~p~a~~~~~-~ 97 (278)
T 2nn6_C 21 KENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAA--PSTDAPDKGYVVPNVDLPPLCSSRFR-S 97 (278)
T ss_dssp HTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECC--CCSSSTTCCCCEEEEECCSSSCTTSC-S
T ss_pred hcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeec--CCCCCCCccEEEEEEEeCCccCcccc-C
Confidence 68999999999999999999999999999999999999999999997653 33456899999999999999998764 5
Q ss_pred CCCCchHHHHHHHHHHHHHH--hhccccC---C---CceEEEEEEEEecCCChhhHHHHHHHHHHHhCCC----------
Q 025482 86 PKGDRRSTEISLVIRQTMEA--CILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAGI---------- 147 (252)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p---~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gI---------- 147 (252)
|++++++.+++++|+++|++ +++++.+ | .|.|+|+++||++|||+++|+++|+++||+++||
T Consensus 98 g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~~ 177 (278)
T 2nn6_C 98 GPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA 177 (278)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSB
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 78899999999999999996 5777654 4 3599999999999999999999999999999996
Q ss_pred ------------CeeceeeEEEeeeeCC-eeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHHH
Q 025482 148 ------------PMRDIVTSCSAGYLNS-TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQL 212 (252)
Q Consensus 148 ------------p~~~~~~avs~~~~~~-~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~~l~~ 212 (252)
|++++|+++|++++++ .+++|||.+||..+++.++|++ +..|+|+++++.| +++.+++.++++.
T Consensus 178 ~~~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~~ 256 (278)
T 2nn6_C 178 LAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVM-DEEGKLCCLHKPGGSGLTGAKLQDCMSR 256 (278)
T ss_dssp CCCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEE-CTTCCEEEEEESCCSCCCHHHHHHHHHH
T ss_pred ceecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEE-cCCCcEEEEEccCCCCCCHHHHHHHHHH
Confidence 7999999999999998 9999999999999999999995 7788999999988 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025482 213 AIEGCKAVANYIREVRKF 230 (252)
Q Consensus 213 A~~~~~~i~~~i~~~l~~ 230 (252)
|.++++++.+.+++++++
T Consensus 257 a~~~~~~i~~~~~~~l~~ 274 (278)
T 2nn6_C 257 AVTRHKEVKKLMDEVIKS 274 (278)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
No 19
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=4.2e-47 Score=325.32 Aligned_cols=213 Identities=22% Similarity=0.386 Sum_probs=183.2
Q ss_pred CCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCCC
Q 025482 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86 (252)
Q Consensus 7 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~~ 86 (252)
+|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.. +..+.|+++.++++ ++|. .|
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~-~~~~~~~~~~~~~~--~~P~-------~g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGT-RKGENPEKASIEVV--WKPM-------TG 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECC-CTTSCSSSCEEEEE--EECS-------SS
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCC-cccCCCccEEEEEE--eCCC-------CC
Confidence 57899999999999999999999999999999999999999999997543 34456788887665 4563 24
Q ss_pred CCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeeee-CCee
Q 025482 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTP 165 (252)
Q Consensus 87 ~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~-~~~~ 165 (252)
++++++++++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+++||||+++|++++++++ ++.+
T Consensus 72 ~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~ 151 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCE
T ss_pred CCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEE
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred EEeCCchhhhcCCCeEEEEEcCCCCcEEEEEe------------------ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 166 LLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM------------------DAKLPTNTFEDVMQLAIEGCKAVANYIREV 227 (252)
Q Consensus 166 l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~------------------~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~ 227 (252)
++||+.+||+.+++.++|++ ++. .+|.+++ .|.++.+++.++++.|.++++++.++++++
T Consensus 152 llDpt~~Ee~~~~~~~~va~-~~~-~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 229 (246)
T 3hkm_A 152 ILDTNKAEEQQLKSFAHLVF-PNS-RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTT 229 (246)
T ss_dssp EESCCHHHHTTCSEEEEEEE-EC---------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHhcCCeeEEEEE-eCC-ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 554 4666665 567999999999999999999999999998
Q ss_pred HHHH
Q 025482 228 RKFL 231 (252)
Q Consensus 228 l~~~ 231 (252)
+++.
T Consensus 230 l~~~ 233 (246)
T 3hkm_A 230 LQKQ 233 (246)
T ss_dssp TC--
T ss_pred HHhh
Confidence 8765
No 20
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.2e-46 Score=330.83 Aligned_cols=224 Identities=18% Similarity=0.205 Sum_probs=202.4
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCC
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (252)
++|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++... |..++|++|.+.++|++.|++++.++ .
T Consensus 33 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~--p~~~~~~~g~l~~~v~~~p~a~~~~~-~ 109 (305)
T 2nn6_E 33 QEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGT--PKLEKPNEGYLEFFVDCSASATPEFE-G 109 (305)
T ss_dssp HTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSC--CCSSSCSSCCEEEECCCCTTTCSSCC-T
T ss_pred hcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeC--CCcCCCCceEEEEEEEeCCCcCcccc-C
Confidence 57999999999999999999999999999999999999999999996543 34456899999999999999988663 2
Q ss_pred CCCCchHHHHHHHHHHHHHH--hhccc---cCCCc---eEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeec------
Q 025482 86 PKGDRRSTEISLVIRQTMEA--CILTH---LMPRS---QIDIFVQVLQADGGTRSACINAATLALQDAGIPMRD------ 151 (252)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~l~---~~p~~---~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~------ 151 (252)
+.+++++.+++++|+++|++ +|+++ .+|+. .|+|+++||++|||+++|+++|+++||+++++|+..
T Consensus 110 r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~ 189 (305)
T 2nn6_E 110 RGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 189 (305)
T ss_dssp TSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC--
T ss_pred CCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 34557889999999999999 68887 57864 699999999999999999999999999999999754
Q ss_pred ---------------------eeeEEEeeeeCCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHH
Q 025482 152 ---------------------IVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFED 208 (252)
Q Consensus 152 ---------------------~~~avs~~~~~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~ 208 (252)
+|+++|++++++.+++|||.+||..+++.++|+ ++..++|+++++.| .++.+++.+
T Consensus 190 ~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va-~~~~g~i~~i~~~g~~~l~~~~l~~ 268 (305)
T 2nn6_E 190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVS-VTSKGVVTCMRKVGKGSLDPESIFE 268 (305)
T ss_dssp ----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEEC-CCSSSCCCEEEEEESSCBCHHHHHH
T ss_pred CceeeeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEE-EcCCCCEEEEEccCCCCCCHHHHHH
Confidence 478999999999999999999999999999998 47778999999987 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025482 209 VMQLAIEGCKAVANYIREVRKFLLI 233 (252)
Q Consensus 209 ~l~~A~~~~~~i~~~i~~~l~~~~~ 233 (252)
+++.|.++++++.+.+++++++...
T Consensus 269 ~l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 269 MMETGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998755
No 21
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.1e-45 Score=331.74 Aligned_cols=224 Identities=16% Similarity=0.186 Sum_probs=201.7
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccC
Q 025482 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (252)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 84 (252)
+++|+|+|||+++|+|++.+++| +++|||++++|+|+|+|+|++|.+.+ ..++|++|.+.++|++.|+++++++
T Consensus 35 L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p--~~~~~~~g~l~~~v~~~p~a~~~~~- 108 (358)
T 2nn6_A 35 IEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSP--KLNRATEGILFFNLELSQMAAPAFE- 108 (358)
T ss_dssp HHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECC--CSTTTTSCCEEEEEEECTTTCSSCC-
T ss_pred HhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCC--cccCCCCcEEEEEEEecCCcccccc-
Confidence 35899999999999999999999 89999999999999999999986544 3456899999999999999988754
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--ccccC------CCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCC--------
Q 025482 85 KPKGDRRSTEISLVIRQTMEACI--LTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIP-------- 148 (252)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i--~l~~~------p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp-------- 148 (252)
.|++++++.+++++|+++|++++ +++.+ +.|.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 109 ~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~ 188 (358)
T 2nn6_A 109 PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 188 (358)
T ss_dssp SSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCe
Confidence 46788899999999999999964 44432 456999999999999999999999999999999999
Q ss_pred ---------------eeceeeEEEeeee--CCeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHH
Q 025482 149 ---------------MRDIVTSCSAGYL--NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDV 209 (252)
Q Consensus 149 ---------------~~~~~~avs~~~~--~~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~~ 209 (252)
++++|+++|++++ ++.+++||+.+||..+++.++|+ +++.|+|+++++.| +++.+++.++
T Consensus 189 v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va-~t~~g~I~~lqk~G~~~ls~~~l~~~ 267 (358)
T 2nn6_A 189 VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIA-MNKHREICTIQSSGGIMLLKDQVLRC 267 (358)
T ss_dssp CBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEE-EETTTEEEEEEEESCCCCCHHHHHHH
T ss_pred eEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEE-EcCCCeEEEEEeCCCCCCCHHHHHHH
Confidence 8999999999987 78999999999999999999999 58889999999987 4799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025482 210 MQLAIEGCKAVANYIREVRKFLLIAV 235 (252)
Q Consensus 210 l~~A~~~~~~i~~~i~~~l~~~~~~~ 235 (252)
++.|.++++++.+++++++++....+
T Consensus 268 l~~A~~~~~~i~~~~~~~l~~~~~~r 293 (358)
T 2nn6_A 268 SKIAGVKVAEITELILKALENDQKVR 293 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 99999999999999999999875543
No 22
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=323.61 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=184.4
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCC
Q 025482 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (252)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~ 85 (252)
++|+|+|||+++|+|++++++| +++|||++++|+|+|+|+|++|...+ ..+.|++|.+.++|+++|++++..+ .
T Consensus 20 ~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p--~~~~~~~g~~~~~ve~~~~~~~~~~-~ 93 (305)
T 2wp8_A 20 RQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQP--YEDRPFEGLFVISTEISPMAGSQFE-N 93 (305)
T ss_dssp TTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-C--CSSCTTCCEEEEEECCC----------
T ss_pred hhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCC--cccCCCCcEEEEEEEECCCCCcccc-C
Confidence 6899999999999999999999 79999999999999999999875443 3456889999999999999887653 4
Q ss_pred CCCC-chHHHHHHHHHHHHH--HhhccccC---CC---ceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCC--------
Q 025482 86 PKGD-RRSTEISLVIRQTME--ACILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIP-------- 148 (252)
Q Consensus 86 ~~~~-~~~~~l~~~l~~~l~--~~i~l~~~---p~---~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp-------- 148 (252)
|+++ +++.+++++|+++|+ ++|+++.+ |+ |.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 94 g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~~ 173 (305)
T 2wp8_A 94 GNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173 (305)
T ss_dssp -------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTSS
T ss_pred CCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCCc
Confidence 5677 888999999999999 46888765 65 4799999999999999999999999999999999
Q ss_pred ---------------eeceeeEEEeeeeC--------------CeeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec
Q 025482 149 ---------------MRDIVTSCSAGYLN--------------STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA 199 (252)
Q Consensus 149 ---------------~~~~~~avs~~~~~--------------~~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g 199 (252)
|++.|+++|+++++ +.+++||+.+||..+++.++|++ +..|+|+.+++.|
T Consensus 174 ~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~-~~~g~i~~l~~~g 252 (305)
T 2wp8_A 174 IIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTL-NKNREVVQVSKAG 252 (305)
T ss_dssp CCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEE-CTTSEEEEEEEEE
T ss_pred eEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEE-cCCCcEEEEEecC
Confidence 67899999999997 78999999999999999999985 7889999999987
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025482 200 --KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVDI 237 (252)
Q Consensus 200 --~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~ 237 (252)
+++.+++.++++.|.++++++.+++++++++...++.-
T Consensus 253 ~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 292 (305)
T 2wp8_A 253 GLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNK 292 (305)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999988666543
No 23
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=2.1e-44 Score=336.25 Aligned_cols=227 Identities=21% Similarity=0.309 Sum_probs=197.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-EcCccccccccc--CCCceEEEEEEeecCCC
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFS 78 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~~--~~~~g~l~v~v~~~~~~ 78 (252)
+.++++|.|+|||+++|+||+++++|++++++|||++++|+|+|+|+| .||.+..+..+. .+++|.+.++|++.||+
T Consensus 307 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~s 386 (549)
T 3gme_A 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 386 (549)
T ss_dssp HHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCC
Confidence 356789999999999999999999999999999999999999999999 598765432222 24779999999999999
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHHhhc-cccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEE
Q 025482 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (252)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs 157 (252)
++++++.++++.++.+++++++++|+++|+ .++||++ |+|+++||++|||.++|+++|+++||+|+||||++++++++
T Consensus 387 t~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs 465 (549)
T 3gme_A 387 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 (549)
T ss_dssp TTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cCCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEE
Confidence 998877778999999999999999999999 5789975 99999999999999999999999999999999999999999
Q ss_pred eeeeCC----eeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 158 AGYLNS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKF 230 (252)
Q Consensus 158 ~~~~~~----~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 230 (252)
+|++++ .+++||+..|+..++..+.|+ .+ .+.++++++++ +|+.+++.++++.|.+++.+|.+.+++++.+
T Consensus 466 ~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va-~t-~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~ 543 (549)
T 3gme_A 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GS-RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 (549)
T ss_dssp EEEEEETTEEEEEESCCHHHHHHSSEEEEEE-EC-SSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEcCCCceEEEecCChHHHccCCceEEEE-ec-CCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999965 688999999999999999998 34 44588999875 4799999999999999999999999998765
Q ss_pred H
Q 025482 231 L 231 (252)
Q Consensus 231 ~ 231 (252)
.
T Consensus 544 p 544 (549)
T 3gme_A 544 P 544 (549)
T ss_dssp C
T ss_pred h
Confidence 3
No 24
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=335.06 Aligned_cols=226 Identities=23% Similarity=0.294 Sum_probs=202.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccc-cc------cCCCceEEEEEEee
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQ------QMSDQALVRCEYSM 74 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~-~~------~~~~~g~l~v~v~~ 74 (252)
++++++|.|+|||.++|+||+++++|++++++|||+|++|+|+|+|+|++|...+.. .+ ..+++|.+.++|++
T Consensus 311 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~ 390 (630)
T 3u1k_A 311 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEF 390 (630)
T ss_dssp HHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEe
Confidence 356778999999999999999999999999999999999999999999985332211 11 13678999999999
Q ss_pred cCCCcccccCCCCCCchHHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceee
Q 025482 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVT 154 (252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~ 154 (252)
.||+++++++.|+++.++.+++++++++|+++++ +.||+. |+|+++||++|||.++|+++|+++||+|+||||+++++
T Consensus 391 ~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~t-I~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Va 468 (630)
T 3u1k_A 391 PPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPFT-IRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 468 (630)
T ss_dssp CGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSSE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCE
T ss_pred cCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCeE-EEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceE
Confidence 9999998877788899999999999999999987 569975 99999999999999999999999999999999999999
Q ss_pred EEEeeeeC------C-----eeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHH
Q 025482 155 SCSAGYLN------S-----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAV 220 (252)
Q Consensus 155 avs~~~~~------~-----~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i 220 (252)
++++++++ + .+++||+..|+..++..+.|+ .+.+| |++++++| +|+.+++.++++.|.+++++|
T Consensus 469 avs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va-~t~~g-It~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I 546 (630)
T 3u1k_A 469 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIA-GTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEI 546 (630)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEE-ECSSC-EEEEEEEECSSCBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEE-ecCCc-eEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999997 3 689999999999999999998 46666 99999987 579999999999999999999
Q ss_pred HHHHHHHHHHH
Q 025482 221 ANYIREVRKFL 231 (252)
Q Consensus 221 ~~~i~~~l~~~ 231 (252)
.+.+++++++.
T Consensus 547 ~~~m~~al~~~ 557 (630)
T 3u1k_A 547 LQIMNKTISKP 557 (630)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 25
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=3.1e-43 Score=337.27 Aligned_cols=226 Identities=23% Similarity=0.343 Sum_probs=204.5
Q ss_pred ccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-EcCccccccccc--CCCceEEEEEEeecCCCc
Q 025482 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFST 79 (252)
Q Consensus 3 ~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~~--~~~~g~l~v~v~~~~~~~ 79 (252)
.++++|.|+|||+++|+||+++++|++++++|||++++|+|+|+|+| +||.++.++.+. .++++.+.++|+++||++
T Consensus 324 ~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st 403 (726)
T 4aid_A 324 GILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSV 403 (726)
T ss_dssp HHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGG
T ss_pred HHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcc
Confidence 56789999999999999999999999999999999999999999999 699876544321 247799999999999999
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHhhc-cccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEe
Q 025482 80 GDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (252)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~ 158 (252)
+++++.++++.++.+++++++++|+++++ .+.||++ |+|+++||++|||.++|+++|+++||+|+||||+++++++++
T Consensus 404 ~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~Vaavsv 482 (726)
T 4aid_A 404 GETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAM 482 (726)
T ss_dssp TCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEE
T ss_pred cccccCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEEE
Confidence 98877778999999999999999999998 5889986 999999999999999999999999999999999999999999
Q ss_pred eeeCC----eeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 159 GYLNS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231 (252)
Q Consensus 159 ~~~~~----~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 231 (252)
|++++ .+++||+..|+..++..+.|+ . ..+.|+.+|++| +|+.+++.++++.|.++|.+|++.+++++.+.
T Consensus 483 Gli~~g~~~~iLlD~~~~Ed~~gd~d~~Va-~-t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~ 560 (726)
T 4aid_A 483 GLILEQDGFAVLSDILGDEDHLGDMDFKVA-G-TSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAP 560 (726)
T ss_dssp EEEECSSCEEEEESCCTTGGGGSSEEEEEE-E-ETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred EEEcCCCceEEEecCChhHHhcCCceEEEE-e-cCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99954 478899999999999999887 3 455699999987 47999999999999999999999999988743
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=5.7e-43 Score=337.89 Aligned_cols=227 Identities=25% Similarity=0.379 Sum_probs=206.6
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEE-cCcccccccc--cCCCceEEEEEEeecCCC
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~-gp~e~~~~~~--~~~~~g~l~v~v~~~~~~ 78 (252)
++++++|.|+|||.++|+||+++++|++++++|||+|++|+|+|+|+|+ ||.++.++.+ ..++++.+.++|+++||+
T Consensus 348 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~s 427 (757)
T 1e3p_A 348 ERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYS 427 (757)
T ss_dssp HHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcc
Confidence 4567799999999999999999999999999999999999999999994 8887655433 246789999999999999
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHHhhc-cccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEE
Q 025482 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (252)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs 157 (252)
++++++.++++.++.+++++++++|+++++ .+.||++ |+|+++||++|||.++|+++|+++||+|+||||++++++++
T Consensus 428 t~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs 506 (757)
T 1e3p_A 428 VGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYA-IRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 506 (757)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhccccccCCEE-EEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 998876678999999999999999999998 6889976 99999999999999999999999999999999999999999
Q ss_pred eeee----CC----eeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeecC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 158 AGYL----NS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226 (252)
Q Consensus 158 ~~~~----~~----~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~---~~~~~l~~~l~~A~~~~~~i~~~i~~ 226 (252)
++++ ++ .+++||+..|+..++..++|+ ++.++|++++++|. ++.+++.++++.|.+++++|.+.+++
T Consensus 507 ~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va--~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~ 584 (757)
T 1e3p_A 507 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVA--GTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 584 (757)
T ss_dssp EEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEE--ECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCccceeEEeCCCHHHHhccCceEEEE--ecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 43 689999999999999999998 45578999999875 69999999999999999999999999
Q ss_pred HHHHH
Q 025482 227 VRKFL 231 (252)
Q Consensus 227 ~l~~~ 231 (252)
++.+.
T Consensus 585 al~~~ 589 (757)
T 1e3p_A 585 AIDTP 589 (757)
T ss_dssp HCSSC
T ss_pred Hhccc
Confidence 98754
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.6e-42 Score=333.70 Aligned_cols=227 Identities=20% Similarity=0.299 Sum_probs=194.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEE-EcCcccccccc--cCCCceEEEEEEeecCCC
Q 025482 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (252)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V-~gp~e~~~~~~--~~~~~g~l~v~v~~~~~~ 78 (252)
++++++|.|+|||+++|+||+++++|++++++|||+|++|+|+|+|+| .||.+..+..+ ..++++.+.++|+++||+
T Consensus 313 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~s 392 (723)
T 3cdi_A 313 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 392 (723)
T ss_dssp HHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGG
T ss_pred HHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCC
Confidence 456789999999999999999999999999999999999999999999 58876432111 135778999999999999
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHHhhcc-ccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEE
Q 025482 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (252)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l-~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs 157 (252)
++++++.+.++.++.+++++++++|++++++ +.||++ |+|+++||++|||+++|+++|+++||+|+||||++++++++
T Consensus 393 t~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs 471 (723)
T 3cdi_A 393 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 471 (723)
T ss_dssp GTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEE
Confidence 9987666677888889999999999999986 679976 99999999999999999999999999999999999999999
Q ss_pred eeeeC-C---eeEEeCCchhhhcCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 158 AGYLN-S---TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKF 230 (252)
Q Consensus 158 ~~~~~-~---~~l~DPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 230 (252)
+++++ + .+++||+..|+..+++.++|+ .+.+| |++++++| +++.+++.++++.|.+++.++.+.|++++.+
T Consensus 472 ~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va-~t~~g-I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~ 549 (723)
T 3cdi_A 472 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 549 (723)
T ss_dssp EEEEEETTEEEEESSCCGGGGGGCSEEEEEE-ECSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEcCCCceEEEECCChHHhhhccceeeec-ccCCc-eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99995 3 489999999999999999998 46666 99999984 5899999999999999999999999999876
Q ss_pred H
Q 025482 231 L 231 (252)
Q Consensus 231 ~ 231 (252)
.
T Consensus 550 ~ 550 (723)
T 3cdi_A 550 P 550 (723)
T ss_dssp -
T ss_pred c
Confidence 5
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=6.4e-45 Score=307.72 Aligned_cols=204 Identities=22% Similarity=0.322 Sum_probs=164.3
Q ss_pred CCCCcceEEEECCCCCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccccCCCCCCchHHHH
Q 025482 16 PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEI 95 (252)
Q Consensus 16 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~l 95 (252)
.+|+|++++++|++++++|||++++|+|+|+|+|+||.+++. ..+.++++.++++| .|+++ +++++ ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~-~~~~~~~~~l~v~~--~p~~G-------~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHA-SKASDEAMTLDISY--RANCG-------DNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC--------------CCCS--SCCCC---------CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcc-cccCCceEEEEEEE--cCCCC-------CCCHH--HH
Confidence 579999999999999999999999999999999999987653 34557888886655 46643 23333 78
Q ss_pred HHHHHHHHHHhhccccCCCceEEEEEEEEecCCChhhHHHHHHHHHHHhCCCCeeceeeEEEeeeeCCeeEEeCCchhhh
Q 025482 96 SLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175 (252)
Q Consensus 96 ~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~~~~~l~DPt~~Ee~ 175 (252)
+++|++.|+++++++.||++.|+|+++||++||++++|++||+++||+++||||++++++++++++++.+++|||.+|++
T Consensus 70 ~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 70 NNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEA 149 (222)
T ss_dssp TTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCTTTTT
T ss_pred HHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEE---cCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 176 AGGPDVTVGI---LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231 (252)
Q Consensus 176 ~~~~~l~v~~---~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 231 (252)
.+++.++|++ .++.++|+++++.|.++.+++.++++.|.+.++++.+++++++++.
T Consensus 150 ~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 208 (222)
T 3krn_A 150 ASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK 208 (222)
T ss_dssp SCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 5567999999999999999999999999999999999999999865
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=279.48 Aligned_cols=213 Identities=18% Similarity=0.248 Sum_probs=186.7
Q ss_pred CCcceEEEECCCCC-CCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcc-----cccCCCCCCch
Q 025482 18 EMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG-----DRMRKPKGDRR 91 (252)
Q Consensus 18 e~R~i~i~~g~l~~-a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~-----~~~~~~~~~~~ 91 (252)
.-|++++++|.+++ |+|||++++|+|+|+|+|++|.+++. . +...|+|+|+..+++.+ ..++.++++++
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~---~--df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSP---S--QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCS---S--SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCC---C--CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 36899999999985 99999999999999999999987542 1 56679999999988874 23345789999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCCh--hhHHHHHHHHHHHhCCCCeeceeeEEEeeeeCCeeEEeC
Q 025482 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (252)
Q Consensus 92 ~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~l--l~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~~~~~l~DP 169 (252)
+.+++++|+|.|++++++..+|+. +|+++||++||+. ..+++||+++||.+++|||++++.++++++++|.+++||
T Consensus 88 e~lisRlIdR~lRp~~~~~~~~~~--qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 88 EILTSRIIDRSIRPLFPAGYFYDT--QVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCCCE--EEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHhHHhhhcccccCCCce--EEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 999999999999999998888875 4788899999998 779999999999999999999999999999999999999
Q ss_pred CchhhhcCCCeEEEEEcCCCCcEEEEEeecC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccc
Q 025482 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDIV 238 (252)
Q Consensus 170 t~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~-~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~~ 238 (252)
|.+|++.++..++|+. +..++|++++..|. ++++++.++++.|.+.++++.+++++.+++. ...|+|.
T Consensus 166 t~~E~~~s~~dl~Va~-t~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 235 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAG-APKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQ 235 (630)
T ss_dssp CHHHHHTEEEEEEEEE-ETTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CHHHHhhCCceEEEEE-ccCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Confidence 9999999999999995 56789999999886 9999999999999999999999999998877 4446664
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.98 E-value=2.1e-30 Score=241.89 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=176.6
Q ss_pred CcceEEEECCCC-CCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCccc-----ccCCCCCCchH
Q 025482 19 MRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRRS 92 (252)
Q Consensus 19 ~R~i~i~~g~l~-~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~-----~~~~~~~~~~~ 92 (252)
-|++++++|.+. +|+||+++++|+|+|+|+|+++.+++.. .+...++++|....++.+. .++.|++++++
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g----~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~ 88 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGE 88 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGTTCCCSCC-----CCCHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCC----CCCccceeeeeeehhhcccCCCcCcCcCCCCChhh
Confidence 589999999886 6999999999999999999998654321 1334589999755544432 23468999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCChh--hHHHHHHHHHHHhCCCCeeceeeEEEeeeeCCeeEEeCC
Q 025482 93 TEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR--SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN 170 (252)
Q Consensus 93 ~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~ll--~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~~~~~l~DPt 170 (252)
.+++++|+|.|+++++...+. .++|+++||+.||+.. .+++||+++||..++||+++++.++++|+++|.+++|||
T Consensus 89 ~l~~RlIdR~lRplfp~~~~~--evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~vlnPt 166 (549)
T 3gme_A 89 TLIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPT 166 (549)
T ss_dssp HHHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEEEESCC
T ss_pred hHHHHHhCCccccccccCCcc--cEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCEEEECCC
Confidence 999999999999977665443 5888999999998653 578999999999999999999999999999999999999
Q ss_pred chhhhcCCCeEEEEEcCCCCcEEEEEeec-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccc
Q 025482 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDIV 238 (252)
Q Consensus 171 ~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g-~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~~ 238 (252)
.+|++.++..++|+. +. +.+++++..| .++++++.++++.|.+.++++.+++++++++. ...++|.
T Consensus 167 ~~e~~~s~~dl~va~-t~-~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~ 234 (549)
T 3gme_A 167 QDELKESKLDLVVAG-TE-AAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQ 234 (549)
T ss_dssp TTTTTTCSBCEEEEE-CS-SCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHhhCceEEEEEe-cC-CeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 999999999999983 44 4599999886 69999999999999999999999999999877 3445553
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.97 E-value=7.5e-30 Score=244.81 Aligned_cols=212 Identities=20% Similarity=0.256 Sum_probs=179.9
Q ss_pred CCcceEEEECCCC-CCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCccc-----ccCCCCCCch
Q 025482 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (252)
Q Consensus 18 e~R~i~i~~g~l~-~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~-----~~~~~~~~~~ 91 (252)
.-|++++++|.+. +|+||+++++|+|+|+|+|+++.+++.. .+..+++++|....++.+. .++.|+++++
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g----~df~pltveY~ek~~a~G~iPg~~~~REGrps~~ 101 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG----QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEK 101 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC----CCCcCceeeeeeehhhcccCCCcccCCCCCCCch
Confidence 4689999999886 6999999999999999999998654321 2445699999754444332 2346899999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCCh--hhHHHHHHHHHHHhCCCCeeceeeEEEeeeeCCeeEEeC
Q 025482 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (252)
Q Consensus 92 ~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~l--l~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~~~~~l~DP 169 (252)
+.+++|+|+|.|+++++...++ .++|+++||+.||+. ..+++||+++||..+++|+++++.++++|+++|.+++||
T Consensus 102 ~~li~RlIdR~lRplf~~~~~~--evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~vldP 179 (726)
T 4aid_A 102 ETLVSRLIDRPIRPLFVKGFKN--EVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNP 179 (726)
T ss_dssp HHHHHHHHHHHHGGGBCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEEEESC
T ss_pred hhhHHHHhCCccccccccCCcc--ceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEECC
Confidence 9999999999999988765543 588999999999875 357999999999999999999999999999999999999
Q ss_pred CchhhhcCCCeEEEEEcCCCCcEEEEEeec-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhcc
Q 025482 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDI 237 (252)
Q Consensus 170 t~~Ee~~~~~~l~v~~~~~~~~i~~i~~~g-~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~ 237 (252)
|.+|++.++..++|+ .+..+ +++++..| .++++++.++++.|.+.++++.+++++++++. ...|+|
T Consensus 180 t~~E~~~s~~dl~va-~t~~~-i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~~k~~~ 247 (726)
T 4aid_A 180 TLDEMKESKMDLVVA-GTADA-VMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAF 247 (726)
T ss_dssp CHHHHHTCSEEEEEE-ECSSC-EEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCC
T ss_pred CHHHHhhCceeEEEE-EeCCe-EEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 999999999999998 35544 99999886 59999999999999999999999999998877 334554
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=1.6e-29 Score=243.37 Aligned_cols=210 Identities=19% Similarity=0.260 Sum_probs=176.1
Q ss_pred cceEEEECCC-CCCCeeEEEEeCCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCcccc-----cCCCCCCchHH
Q 025482 20 RQLRAEIGNV-AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRST 93 (252)
Q Consensus 20 R~i~i~~g~l-~~a~GSa~v~~G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~~-----~~~~~~~~~~~ 93 (252)
|++.+++|.+ .+|+||+++++|+|+|+|+|+++.+++.. .+...++|+|....++.+.. ++.|+|++++.
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~----~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----CCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC----CCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 5999999988 58999999999999999999987543211 24456899998665554432 45689999999
Q ss_pred HHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCCh-h-hHHHHHHHHHHHhCCCCeeceeeEEEeeeeCCeeEEeCCc
Q 025482 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-R-SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171 (252)
Q Consensus 94 ~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~l-l-~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~~~~~l~DPt~ 171 (252)
+++++|+|.|++++..... +.++|+++||+.||+. . .+|+||+++||..++||+.+.+.++++|+++|.+++|||.
T Consensus 96 l~sRlIdR~lRplfp~~~~--~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~v~nPt~ 173 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGFV--NEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHHGGGSCTTCC--SCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEEEESCCT
T ss_pred HHHHHhCccchhcccccCc--ceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCEEEECcCH
Confidence 9999999999997655433 4699999999999996 4 4999999999999999999999999999999999999999
Q ss_pred hhhhcCCCeEEEEEcCCCCcEEEEEeecC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhcc
Q 025482 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDI 237 (252)
Q Consensus 172 ~Ee~~~~~~l~v~~~~~~~~i~~i~~~g~-~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~ 237 (252)
+|++.++..++|+. ..+.+++++..|. ++++++.++++.|.+.++++.+++++++++. ...++|
T Consensus 174 ~e~~~s~~~lvvag--t~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (723)
T 3cdi_A 174 DELKESKLDLVVAG--TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDW 239 (723)
T ss_dssp TGGGGCSEEEEEEE--CSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCC
T ss_pred HHHHhCCceEEEEc--cCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 99999999999983 4456999998765 9999999999999999999999999998876 333554
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.97 E-value=2.1e-29 Score=243.41 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=180.2
Q ss_pred CcceEEEECCC-CCCCeeEEEEe-CCeEEEEEEEcCcccccccccCCCceEEEEEEeecCCCccc-----ccCCCCCCch
Q 025482 19 MRQLRAEIGNV-AKADGSAVFEM-GNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (252)
Q Consensus 19 ~R~i~i~~g~l-~~a~GSa~v~~-G~T~V~~~V~gp~e~~~~~~~~~~~g~l~v~v~~~~~~~~~-----~~~~~~~~~~ 91 (252)
-|++.+++|.+ .+|+||+++++ |+|+|+|+|++|.+++.+ .+...|+|+|....++.+. .+|.|+++++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~----~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ----LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTT----CSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCC----CCCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 48999999997 58999999999 999999999998765322 2455699999766554432 3456899999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCceEEEEEEEEecCCCh--hhHHHHHHHHHHHhCCCCeeceeeEEEeeeeCCeeEEeC
Q 025482 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (252)
Q Consensus 92 ~~~l~~~l~~~l~~~i~l~~~p~~~I~i~v~VL~~dG~l--l~a~i~Aa~~AL~~~gIp~~~~~~avs~~~~~~~~l~DP 169 (252)
+++++++|+|.|+++++... +..++|+++||+.||+. ..+++||+++||.+++||+.+++.++++|+++|.+++||
T Consensus 112 e~l~~RlIdR~LRplfp~~~--~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnP 189 (757)
T 1e3p_A 112 AILTCRLIDRPLRPSFKKGL--RNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHHGGGBCTTB--CEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHCCcchhccccCC--CCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEECC
Confidence 99999999999999654432 23699999999999865 899999999999999999999999999999999999999
Q ss_pred CchhhhcCCCeEEEEEcCC----CCcEEEEEe-------------ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 025482 170 NYVEDSAGGPDVTVGILPT----LDKVTLLQM-------------DAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL- 231 (252)
Q Consensus 170 t~~Ee~~~~~~l~v~~~~~----~~~i~~i~~-------------~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~- 231 (252)
|.+|++.++..++|+. +. .+.|.+++. .+.++++++.++++.|.+.++++.+++++++++.
T Consensus 190 t~~e~~~s~~dl~va~-t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~~ 268 (757)
T 1e3p_A 190 THTELEDAVFDMVVAG-RVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAA 268 (757)
T ss_dssp CHHHHTTEEEEEEEEE-EECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHhcCceeEEEEe-ccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999984 42 678999998 3469999999999999999999999999998866
Q ss_pred Hhhhcc
Q 025482 232 LIAVDI 237 (252)
Q Consensus 232 ~~~~~~ 237 (252)
...++|
T Consensus 269 ~~~~~~ 274 (757)
T 1e3p_A 269 KPTGEF 274 (757)
T ss_dssp CCCCCC
T ss_pred CCCccC
Confidence 333555
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=35.49 E-value=35 Score=20.39 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025482 200 KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIA 234 (252)
Q Consensus 200 ~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 234 (252)
.++.+.+.++-.+|.+......++|++++.+....
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998876543
No 35
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=32.66 E-value=1.6e+02 Score=22.15 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=38.1
Q ss_pred hcCCCeEEEEEcCCCCcEEEEEeecC----CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 025482 175 SAGGPDVTVGILPTLDKVTLLQMDAK----LPTNTFEDVMQLAIEGCKAVANY-IREVRKFLLI 233 (252)
Q Consensus 175 ~~~~~~l~v~~~~~~~~i~~i~~~g~----~~~~~l~~~l~~A~~~~~~i~~~-i~~~l~~~~~ 233 (252)
....+.++|. ++-+++|..++-+-. -+.+.+++++-.|...+.+-.+. .++.+++.+.
T Consensus 72 ~sGgGlVkVt-vnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~e~~~e~M~~ltg 134 (143)
T 1ybx_A 72 SAGGGAVTVV-ATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKITG 134 (143)
T ss_dssp EETTTTEEEE-EETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EECCCEEEEE-EecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456778887 588999999998643 35567888887777666554433 3444555544
No 36
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=28.94 E-value=1.6e+02 Score=21.14 Aligned_cols=42 Identities=2% Similarity=0.059 Sum_probs=34.0
Q ss_pred CcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025482 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 231 (252)
Q Consensus 190 ~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 231 (252)
.-.+-++..|..+.+.+.++++.-.+.|..+.+.+.+++++.
T Consensus 62 ~~~lrIqT~~~~p~eaL~~al~~L~~~~~~l~~~f~~a~~~~ 103 (115)
T 1xpp_A 62 NPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRY 103 (115)
T ss_dssp CCEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777766778899999999999999999988888765
No 37
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=23.16 E-value=40 Score=20.98 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025482 201 LPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 235 (252)
Q Consensus 201 ~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~ 235 (252)
++++...++-..|....+.+.+.|+++|++.+.+.
T Consensus 20 Id~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~~ 54 (56)
T 2kel_A 20 MDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_dssp EEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999876554
No 38
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=20.23 E-value=75 Score=18.00 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025482 200 KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 233 (252)
Q Consensus 200 ~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~ 233 (252)
.++.+.+.++=..|.+....-.++|++++...+.
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3577788888888888777888899998887654
Done!