Query 025484
Match_columns 252
No_of_seqs 243 out of 1530
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 8.7E-25 1.9E-29 183.4 12.4 115 111-249 7-122 (142)
2 COG0071 IbpA Molecular chapero 99.9 4.1E-24 9E-29 177.5 11.4 97 142-251 39-135 (146)
3 PRK10743 heat shock protein Ib 99.9 4.4E-24 9.6E-29 177.8 11.0 110 118-249 14-124 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.8E-23 4E-28 160.8 10.6 92 148-248 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 1.4E-22 3.1E-27 155.5 10.2 92 148-248 2-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 5.1E-21 1.1E-25 147.5 11.2 88 148-248 2-90 (90)
7 cd06497 ACD_alphaA-crystallin_ 99.8 8.4E-21 1.8E-25 146.1 9.4 83 150-248 4-86 (86)
8 PF00011 HSP20: Hsp20/alpha cr 99.8 4.3E-20 9.2E-25 142.7 10.8 90 150-251 1-90 (102)
9 cd06475 ACD_HspB1_like Alpha c 99.8 8.3E-20 1.8E-24 140.6 9.3 83 148-247 2-85 (86)
10 cd06479 ACD_HspB7_like Alpha c 99.8 4.1E-20 8.9E-25 141.6 7.4 80 150-248 2-81 (81)
11 cd06498 ACD_alphaB-crystallin_ 99.8 9.1E-20 2E-24 140.0 9.1 82 151-249 2-84 (84)
12 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.2E-19 2.6E-24 138.6 9.5 82 151-248 2-83 (83)
13 cd06464 ACD_sHsps-like Alpha-c 99.8 1.6E-18 3.5E-23 128.2 9.8 88 150-248 1-88 (88)
14 cd06476 ACD_HspB2_like Alpha c 99.8 1E-18 2.3E-23 134.1 8.9 80 152-248 3-83 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.8 1.3E-18 2.8E-23 134.3 8.3 84 153-248 4-87 (87)
16 cd06477 ACD_HspB3_Like Alpha c 99.7 9.1E-18 2E-22 129.3 8.7 80 152-247 3-82 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.7 6.8E-18 1.5E-22 131.1 7.8 81 154-247 6-86 (87)
18 cd06526 metazoan_ACD Alpha-cry 99.7 1.1E-17 2.4E-22 126.6 8.3 77 155-248 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.6 8.7E-16 1.9E-20 134.4 7.0 97 148-251 86-182 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.5 2E-14 4.2E-19 112.8 8.3 82 151-248 10-91 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.4 6.7E-13 1.5E-17 93.8 8.4 80 151-248 1-80 (80)
22 PF05455 GvpH: GvpH; InterPro 99.3 8.7E-12 1.9E-16 108.5 9.8 76 148-251 93-170 (177)
23 cd06469 p23_DYX1C1_like p23_li 99.3 2.4E-11 5.2E-16 89.5 9.1 71 151-251 1-71 (78)
24 KOG3591 Alpha crystallins [Pos 99.3 2.5E-11 5.4E-16 105.1 9.8 90 146-251 62-151 (173)
25 cd06463 p23_like Proteins cont 99.0 3.5E-09 7.6E-14 76.9 9.2 76 151-251 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 3.9E-08 8.5E-13 73.0 7.7 77 150-251 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.1 4.2E-05 9E-10 55.1 10.5 76 148-248 2-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.0 8E-05 1.7E-09 58.8 10.1 77 148-250 2-78 (108)
29 PF08190 PIH1: pre-RNA process 98.0 3.7E-05 8E-10 70.3 8.8 65 155-247 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 97.9 9.6E-05 2.1E-09 55.6 8.4 77 150-251 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.7 0.0003 6.5E-09 52.4 8.9 74 150-251 2-77 (85)
32 cd06493 p23_NUDCD1_like p23_NU 97.5 0.001 2.2E-08 50.5 9.3 74 150-251 2-77 (85)
33 cd06488 p23_melusin_like p23_l 97.5 0.0016 3.6E-08 49.7 10.3 78 149-251 3-80 (87)
34 cd06468 p23_CacyBP p23_like do 97.5 0.0014 3E-08 49.8 9.8 79 148-251 3-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 96.5 0.028 6.1E-07 44.2 9.1 74 148-250 7-82 (93)
36 cd00237 p23 p23 binds heat sho 96.3 0.068 1.5E-06 42.9 10.7 76 148-250 3-78 (106)
37 PLN03088 SGT1, suppressor of 95.9 0.046 1E-06 51.6 8.8 79 148-251 158-236 (356)
38 cd06490 p23_NCB5OR p23_like do 95.5 0.3 6.5E-06 37.5 10.6 75 150-251 2-80 (87)
39 KOG1309 Suppressor of G2 allel 95.2 0.062 1.3E-06 47.8 6.6 78 148-250 5-82 (196)
40 cd06492 p23_mNUDC_like p23-lik 94.0 0.6 1.3E-05 36.0 9.0 73 151-251 3-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 91.5 2.9 6.2E-05 33.5 9.8 78 148-250 6-86 (102)
42 PF13349 DUF4097: Domain of un 55.5 1.1E+02 0.0024 24.7 9.1 81 148-245 67-147 (166)
43 cd06482 ACD_HspB10 Alpha cryst 51.5 25 0.00055 27.2 4.0 34 214-249 7-40 (87)
44 KOG3158 HSP90 co-chaperone p23 45.9 1.1E+02 0.0025 27.3 7.5 76 148-250 9-84 (180)
45 COG5091 SGT1 Suppressor of G2 43.2 20 0.00044 34.4 2.7 79 148-250 178-256 (368)
46 cd06471 ACD_LpsHSP_like Group 40.8 34 0.00074 25.7 3.2 30 155-187 61-90 (93)
47 cd06477 ACD_HspB3_Like Alpha c 34.4 49 0.0011 25.4 3.1 32 216-249 8-39 (83)
48 cd06470 ACD_IbpA-B_like Alpha- 33.3 68 0.0015 24.3 3.8 32 215-248 11-42 (90)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 32.8 62 0.0014 24.4 3.5 32 215-248 7-38 (83)
50 KOG3260 Calcyclin-binding prot 32.7 1.5E+02 0.0032 27.0 6.3 77 150-250 78-154 (224)
51 cd06472 ACD_ScHsp26_like Alpha 32.4 54 0.0012 24.7 3.1 30 155-187 59-89 (92)
52 PF04972 BON: BON domain; Int 32.3 67 0.0015 22.2 3.4 25 165-192 12-36 (64)
53 cd06480 ACD_HspB8_like Alpha-c 31.7 99 0.0021 24.3 4.5 31 156-188 58-89 (91)
54 cd06526 metazoan_ACD Alpha-cry 30.9 75 0.0016 23.5 3.6 32 216-249 8-39 (83)
55 cd06476 ACD_HspB2_like Alpha c 30.7 78 0.0017 24.1 3.7 32 215-248 7-38 (83)
56 PF12091 DUF3567: Protein of u 30.1 96 0.0021 24.6 4.1 38 70-111 5-42 (85)
57 cd06497 ACD_alphaA-crystallin_ 30.1 80 0.0017 24.0 3.7 32 215-248 10-41 (86)
58 KOG1667 Zn2+-binding protein M 29.7 2.3E+02 0.0051 27.0 7.3 80 148-251 216-295 (320)
59 KOG3591 Alpha crystallins [Pos 26.8 90 0.0019 27.3 3.9 28 161-190 120-148 (173)
60 PF14913 DPCD: DPCD protein fa 26.0 3.6E+02 0.0077 24.4 7.5 73 152-250 92-170 (194)
61 PF01954 DUF104: Protein of un 24.9 45 0.00097 24.4 1.4 13 230-243 3-15 (60)
62 KOG3413 Mitochondrial matrix p 24.3 38 0.00083 29.5 1.1 24 223-247 65-88 (156)
63 cd06464 ACD_sHsps-like Alpha-c 23.6 1.3E+02 0.0028 21.4 3.7 33 215-249 7-39 (88)
64 cd02175 GH16_lichenase lichena 23.5 2.2E+02 0.0048 24.7 5.8 12 214-225 68-79 (212)
65 PRK10743 heat shock protein Ib 22.3 1.2E+02 0.0027 25.3 3.7 31 216-248 46-76 (137)
66 cd06498 ACD_alphaB-crystallin_ 22.2 1.1E+02 0.0025 23.1 3.2 32 215-248 7-38 (84)
67 PF00011 HSP20: Hsp20/alpha cr 22.1 1.7E+02 0.0036 22.0 4.2 33 215-249 7-39 (102)
68 cd06479 ACD_HspB7_like Alpha c 21.9 1.5E+02 0.0032 22.6 3.8 32 215-248 8-39 (81)
69 KOG2265 Nuclear distribution p 20.9 6.1E+02 0.013 22.7 8.6 75 148-250 20-96 (179)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.92 E-value=8.7e-25 Score=183.37 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=90.7
Q ss_pred ccCCChHHHHHHHHHHHhccCccCcccccCCCCCCCceeeEEE-eCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEe
Q 025484 111 IPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGE-SEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGV 189 (252)
Q Consensus 111 ip~~p~~~Ef~~l~~~m~~~f~~~g~a~~~~~~P~~~~VDI~E-tdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~ 189 (252)
-|+.+.|..|++++++|.+.+. ..+.| ++||+| ++++|+|.|+||||+|+||+|+ + ++|.|+|+|+
T Consensus 7 ~~~~~~~~~~d~l~~~~~~~~~-------~~~~P---~vdI~e~~~~~y~v~adlPGv~kedi~V~--v-~~~~LtI~ge 73 (142)
T PRK11597 7 SPLLRQWIGFDKLANALQNAGE-------SQSFP---PYNIEKSDDNHYRITLALAGFRQEDLDIQ--L-EGTRLTVKGT 73 (142)
T ss_pred chhhcccccHHHHHHHhcccCc-------cCCCC---cEEEEEcCCCEEEEEEEeCCCCHHHeEEE--E-ECCEEEEEEE
Confidence 3445567788888877654321 12335 899998 5789999999999999999999 8 7999999976
Q ss_pred ccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 190 TTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 190 ~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
++ ....+..|++.+|+ +|+|+|+|.||.+||.+ +|+| +||||+|+|||.
T Consensus 74 ~~-----~~~~~~~~~~~Er~---~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~ 122 (142)
T PRK11597 74 PE-----QPEKEVKWLHQGLV---NQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRN 122 (142)
T ss_pred Ec-----cccCCCcEEEEEEe---CcEEEEEEECCCCcccC--cCEE-cCCEEEEEEecc
Confidence 32 22233445556676 79999999999999998 6999 999999999996
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.1e-24 Score=177.52 Aligned_cols=97 Identities=29% Similarity=0.504 Sum_probs=81.2
Q ss_pred CCCCCceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEE
Q 025484 142 VGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITI 221 (252)
Q Consensus 142 ~~P~~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I 221 (252)
+.| ++||+|++++|.|.++||||+|+||+|+ + +++.|+|+|++.. + ...+... +.+.+++ +|.|+|+|
T Consensus 39 ~~P---~vdi~e~~~~~~I~~elPG~~kedI~I~--~-~~~~l~I~g~~~~-~-~~~~~~~-~~~~e~~---~~~f~r~~ 106 (146)
T COG0071 39 GTP---PVDIEETDDEYRITAELPGVDKEDIEIT--V-EGNTLTIRGEREE-E-EEEEEEG-YLRRERA---YGEFERTF 106 (146)
T ss_pred CCC---cEEEEEcCCEEEEEEEcCCCChHHeEEE--E-ECCEEEEEEEecc-c-ccccCCc-eEEEEEE---eeeEEEEE
Confidence 456 8999999999999999999999999999 7 7999999987541 1 1122334 4444555 69999999
Q ss_pred ECCCCcccCccEEEccCCcEEEEEEecccC
Q 025484 222 NLPGPVDPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 222 ~LP~~VD~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
+||..|+++.++|+| +||||+|+|||.++
T Consensus 107 ~Lp~~v~~~~~~A~~-~nGvL~I~lpk~~~ 135 (146)
T COG0071 107 RLPEKVDPEVIKAKY-KNGLLTVTLPKAEP 135 (146)
T ss_pred ECcccccccceeeEe-eCcEEEEEEecccc
Confidence 999999999999999 99999999999764
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.91 E-value=4.4e-24 Score=177.80 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCccCcccccCCCCCCCceeeEEE-eCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCcee
Q 025484 118 TEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGE-SEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKS 196 (252)
Q Consensus 118 ~Ef~~l~~~m~~~f~~~g~a~~~~~~P~~~~VDI~E-tdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk 196 (252)
.+|+++++.|.+.+.. ..+.+ | ++||++ ++++|+|.|+||||+|+||+|+ + ++|.|+|+|+.+
T Consensus 14 ~~~d~lf~~~~~~~~~----~~~~~-p---~~di~ee~~~~~~v~aelPGv~kedi~V~--v-~~~~LtI~ge~~----- 77 (137)
T PRK10743 14 IGFDRLFNLLENNQSQ----SNGGY-P---PYNVELVDENHYRIAIAVAGFAESELEIT--A-QDNLLVVKGAHA----- 77 (137)
T ss_pred cCHHHHhhhhhhhhhc----ccCCC-C---cEEEEEcCCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEC-----
Confidence 4566666655443321 11222 5 799994 8999999999999999999999 7 789999997642
Q ss_pred eccCCceEEEEEeecCCCccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 197 VNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 197 ~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
....+..+++.+|+ +|+|+|+|.||.+||.++ |+| +||||+|+|||.
T Consensus 78 ~~~~~~~~~~~Er~---~g~F~R~~~LP~~Vd~~~--A~~-~dGVL~I~lPK~ 124 (137)
T PRK10743 78 DEQKERTYLYQGIA---ERNFERKFQLAENIHVRG--ANL-VNGLLYIDLERV 124 (137)
T ss_pred ccccCCcEEEEEEE---CCEEEEEEECCCCcccCc--CEE-eCCEEEEEEeCC
Confidence 22233345555677 799999999999999994 999 999999999996
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.90 E-value=1.8e-23 Score=160.81 Aligned_cols=92 Identities=26% Similarity=0.410 Sum_probs=76.8
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
++||+|++++|+|.++||||+|+||+|+ ++.++.|+|+|+++. + ....+..++..+|. +|+|.|+|+||.+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~--v~~~~~L~I~g~~~~-~--~~~~~~~~~~~e~~---~g~f~r~i~LP~~v 72 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVE--VEDGRVLRISGERKK-E--EEKKGDDWHRVERS---SGRFVRRFRLPENA 72 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEE--EeCCCEEEEEEEecc-c--ccccCCCEEEEEEe---ccEEEEEEECCCCC
Confidence 4899999999999999999999999999 723458999986431 1 11223445666676 79999999999999
Q ss_pred ccCccEEEccCCcEEEEEEec
Q 025484 228 DPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK 248 (252)
|.++|+|+| +||||+|+|||
T Consensus 73 ~~~~i~A~~-~nGvL~I~lPK 92 (92)
T cd06472 73 DADEVKAFL-ENGVLTVTVPK 92 (92)
T ss_pred CHHHCEEEE-ECCEEEEEecC
Confidence 999999999 99999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.88 E-value=1.4e-22 Score=155.45 Aligned_cols=92 Identities=26% Similarity=0.474 Sum_probs=76.7
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
++||+|++++|+|.++||||+|+||+|+ + .++.|+|+|+++... ........+++.+|. +|.|+|+|.|| ++
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~--~-~~~~L~I~g~~~~~~-~~~~~~~~~~~~e~~---~g~f~r~~~lp-~v 73 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLD--Y-KDGYLTISAKRDESK-DEKDKKGNYIRRERY---YGSFSRSFYLP-NV 73 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEcccc-ccccccCCEEEEeee---ccEEEEEEECC-CC
Confidence 6999999999999999999999999999 7 689999998753211 111122345566676 79999999999 79
Q ss_pred ccCccEEEccCCcEEEEEEec
Q 025484 228 DPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK 248 (252)
+.++++|+| +||||+|+|||
T Consensus 74 ~~~~i~A~~-~dGvL~I~lPK 93 (93)
T cd06471 74 DEEEIKAKY-ENGVLKITLPK 93 (93)
T ss_pred CHHHCEEEE-ECCEEEEEEcC
Confidence 999999999 99999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.85 E-value=5.1e-21 Score=147.49 Aligned_cols=88 Identities=18% Similarity=0.341 Sum_probs=73.4
Q ss_pred eeeEEEeC-CEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484 148 KADVGESE-DDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP 226 (252)
Q Consensus 148 ~VDI~Etd-d~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~ 226 (252)
++||+|++ ++|+|.++|||++|+||+|+ + .++.|+|+|+++.. ...+.. |.++++. +|+|.|+|.||.+
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~--~-~~~~L~I~g~~~~~---~~~~~~-~~~~e~~---~g~f~R~~~LP~~ 71 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIE--V-ENNQLTVTGKKADE---ENEERE-YLHRGIA---KRAFERSFNLADH 71 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEccc---ccCCCc-EEEEEEe---ceEEEEEEECCCC
Confidence 79999985 99999999999999999999 7 68999999875421 122334 4445566 7999999999999
Q ss_pred cccCccEEEccCCcEEEEEEec
Q 025484 227 VDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 227 VD~dkIkAsy~~nGVLtItLPK 248 (252)
||.+ +|+| +||||+|+||+
T Consensus 72 vd~~--~A~~-~~GvL~I~l~~ 90 (90)
T cd06470 72 VKVK--GAEL-ENGLLTIDLER 90 (90)
T ss_pred ceEC--eeEE-eCCEEEEEEEC
Confidence 9875 8999 99999999986
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.84 E-value=8.4e-21 Score=146.15 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=69.4
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
+|+|++++|.|.++||||+++||+|+ + .+|.|+|+|+.. +. .++.+ |.+ ..|+|+|.||.+||+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~--~~--~~~~~-~~~--------~ef~R~~~LP~~Vd~ 67 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVK--V-LDDYVEIHGKHS--ER--QDDHG-YIS--------REFHRRYRLPSNVDQ 67 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEc--ce--eCCCC-EEE--------EEEEEEEECCCCCCh
Confidence 69999999999999999999999999 7 789999998632 11 12222 221 259999999999999
Q ss_pred CccEEEccCCcEEEEEEec
Q 025484 230 QQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK 248 (252)
++|+|+|++||||+|++||
T Consensus 68 ~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 68 SAITCSLSADGMLTFSGPK 86 (86)
T ss_pred HHeEEEeCCCCEEEEEecC
Confidence 9999998569999999998
No 8
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.83 E-value=4.3e-20 Score=142.67 Aligned_cols=90 Identities=29% Similarity=0.578 Sum_probs=70.3
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
||+|++++|.|.++|||++++||+|+ + .++.|+|+|.. .....+..+...+++ +|.|.|+|.||.++|.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~--~-~~~~L~I~g~~-----~~~~~~~~~~~~~~~---~~~f~r~~~lP~~vd~ 69 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIK--V-DDNKLVISGKR-----KEEEEDDRYYRSERR---YGSFERSIRLPEDVDP 69 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEE--E-ETTEEEEEEEE-----EGEECTTCEEEE-S----SEEEEEEEE-STTB-G
T ss_pred CeEECCCEEEEEEECCCCChHHEEEE--E-ecCccceecee-----eeeeeeeeeeecccc---cceEEEEEcCCCcCCc
Confidence 89999999999999999999999999 7 68999999763 212223333444455 7999999999999999
Q ss_pred CccEEEccCCcEEEEEEecccC
Q 025484 230 QQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK~e~ 251 (252)
++++|+| +||+|+|++||.+.
T Consensus 70 ~~i~a~~-~~GvL~I~~pk~~~ 90 (102)
T PF00011_consen 70 DKIKASY-ENGVLTITIPKKEE 90 (102)
T ss_dssp GG-EEEE-TTSEEEEEEEBSSS
T ss_pred ceEEEEe-cCCEEEEEEEcccc
Confidence 9999999 99999999999764
No 9
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.81 E-value=8.3e-20 Score=140.63 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=69.8
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
..||+|++++|.|.++|||++|++|+|+ + .+|.|+|+|++. .+ ....+ +. .++|+|+|+||.+|
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~--v-~~~~L~I~g~~~---~~-~~~~~-~~--------~~~f~R~f~LP~~v 65 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVK--T-KDGVVEITGKHE---EK-QDEHG-FV--------SRCFTRKYTLPPGV 65 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEE--E-ECCEEEEEEEEC---cC-cCCCC-EE--------EEEEEEEEECCCCC
Confidence 4689999999999999999999999999 7 689999998642 11 11222 11 14799999999999
Q ss_pred ccCccEEEccC-CcEEEEEEe
Q 025484 228 DPQQFSANFGF-DGILEGTVK 247 (252)
Q Consensus 228 D~dkIkAsy~~-nGVLtItLP 247 (252)
|+++|+|+| + ||||+|++|
T Consensus 66 d~~~v~A~~-~~dGvL~I~lP 85 (86)
T cd06475 66 DPTAVTSSL-SPDGILTVEAP 85 (86)
T ss_pred CHHHcEEEE-CCCCeEEEEec
Confidence 999999999 7 999999998
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.81 E-value=4.1e-20 Score=141.63 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=69.0
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
||.|++++|.|.++|||++|+||+|+ + .+|.|+|+|+ ++.. .+. . +|+|.|+|.||.+||+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~--v-~~~~L~I~ge-----r~~~-~~~-------~---~g~F~R~~~LP~~vd~ 62 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVT--T-SNNQIEVHAE-----KLAS-DGT-------V---MNTFTHKCQLPEDVDP 62 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEE--E-ECCEEEEEEE-----Eecc-CCC-------E---EEEEEEEEECCCCcCH
Confidence 78999999999999999999999999 7 7899999965 3222 111 2 4899999999999999
Q ss_pred CccEEEccCCcEEEEEEec
Q 025484 230 QQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK 248 (252)
++|+|+|.+||||+|+++|
T Consensus 63 e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 63 TSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred HHeEEEecCCCEEEEEecC
Confidence 9999994389999999986
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.81 E-value=9.1e-20 Score=139.99 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=68.2
Q ss_pred EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484 151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ 230 (252)
Q Consensus 151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d 230 (252)
+.+++++|.|.++||||+|+||+|+ + .+|.|+|+|+.. + +. +..+++ + +.|+|+|.||.+||++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~--~-~~-~~~~~~----~-----~eF~R~~~LP~~vd~~ 65 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVK--V-LGDFIEIHGKHE--E-RQ-DEHGFI----S-----REFQRKYRIPADVDPL 65 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEc--c-ee-CCCCEE----E-----EEEEEEEECCCCCChH
Confidence 5678999999999999999999999 7 789999998632 1 11 222222 1 3699999999999999
Q ss_pred ccEEEccC-CcEEEEEEecc
Q 025484 231 QFSANFGF-DGILEGTVKKQ 249 (252)
Q Consensus 231 kIkAsy~~-nGVLtItLPK~ 249 (252)
+|+|+| + ||||+|++||.
T Consensus 66 ~i~A~~-~~dGvL~I~lPk~ 84 (84)
T cd06498 66 TITSSL-SPDGVLTVCGPRK 84 (84)
T ss_pred HcEEEe-CCCCEEEEEEeCC
Confidence 999999 7 99999999994
No 12
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.81 E-value=1.2e-19 Score=138.61 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=67.8
Q ss_pred EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484 151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ 230 (252)
Q Consensus 151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d 230 (252)
|.+++++|.|.++|||++|+||+|+ + .+|.|+|+|+.. + + .++.+ +.+ ..|+|+|.||.+||++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~--v-~~~~L~I~g~~~--~-~-~~~~~-~~~--------~ef~R~~~LP~~vd~~ 65 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVK--V-LGDFVEIHGKHE--E-R-QDEHG-FIS--------REFHRRYRLPPGVDPA 65 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEc--e-E-cCCCC-EEE--------EEEEEEEECCCCcChH
Confidence 6789999999999999999999999 7 689999998632 1 1 12223 221 2599999999999999
Q ss_pred ccEEEccCCcEEEEEEec
Q 025484 231 QFSANFGFDGILEGTVKK 248 (252)
Q Consensus 231 kIkAsy~~nGVLtItLPK 248 (252)
+|+|+|++||||+|++||
T Consensus 66 ~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 66 AITSSLSADGVLTISGPR 83 (83)
T ss_pred HeEEEECCCCEEEEEecC
Confidence 999999349999999998
No 13
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.78 E-value=1.6e-18 Score=128.19 Aligned_cols=88 Identities=32% Similarity=0.527 Sum_probs=72.1
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
|++|++++|.|.++|||+++++|+|+ + .++.|.|+|++.... .... .+...++. +|.|.|+|.||..+|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~--v-~~~~l~I~g~~~~~~---~~~~-~~~~~~~~---~~~f~r~~~LP~~vd~ 70 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVE--V-EDGVLTISGEREEEE---EEEE-NYLRRERS---YGSFSRSFRLPEDVDP 70 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEeccc---ccCC-cEEEEEEe---CcEEEEEEECCCCcCH
Confidence 58899999999999999999999999 7 689999997643111 1111 22333343 6999999999999999
Q ss_pred CccEEEccCCcEEEEEEec
Q 025484 230 QQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK 248 (252)
++++|+| +||+|+|++||
T Consensus 71 ~~i~a~~-~~G~L~I~~pk 88 (88)
T cd06464 71 DKIKASL-ENGVLTITLPK 88 (88)
T ss_pred HHcEEEE-eCCEEEEEEcC
Confidence 9999999 89999999998
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.77 E-value=1e-18 Score=134.10 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=66.1
Q ss_pred EEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCc
Q 025484 152 GESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQ 231 (252)
Q Consensus 152 ~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dk 231 (252)
.-++++|.|.++|||++++||+|+ + .+|.|+|+|+.. + + .+..+ +. .+.|+|+|.||.+||+++
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~--~-~-~~~~~-~~--------~~eF~R~~~LP~~vd~~~ 66 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVR--T-VDNLLEVSARHP--Q-R-MDRHG-FV--------SREFTRTYILPMDVDPLL 66 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEE--E-ECCEEEEEEEEc--c-e-ecCCC-EE--------EEEEEEEEECCCCCChhh
Confidence 346899999999999999999999 7 789999998632 1 1 11222 21 257999999999999999
Q ss_pred cEEEccC-CcEEEEEEec
Q 025484 232 FSANFGF-DGILEGTVKK 248 (252)
Q Consensus 232 IkAsy~~-nGVLtItLPK 248 (252)
|+|+| . ||||+|++||
T Consensus 67 v~A~~-~~dGvL~I~~Pr 83 (83)
T cd06476 67 VRASL-SHDGILCIQAPR 83 (83)
T ss_pred EEEEe-cCCCEEEEEecC
Confidence 99999 6 9999999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.77 E-value=1.3e-18 Score=134.26 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=68.0
Q ss_pred EeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCcc
Q 025484 153 ESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQF 232 (252)
Q Consensus 153 Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkI 232 (252)
+.+++|.|.++|||++|+||+|+ + .+|.|+|+|+... ........+. ++ +|+|+|+|.||.+||.++|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~--v-~~~~L~I~g~~~~---~~~~~~~~~~---~~---~~~F~R~~~LP~~Vd~~~i 71 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVR--V-DGRKLVVTGKREK---KNEDEKGSFS---YE---YQEFVREAQLPEHVDPEAV 71 (87)
T ss_pred CccceEEEEEECCCCChHHeEEE--E-ECCEEEEEEEEee---ecccCCCcEE---EE---eeEEEEEEECCCCcChHHe
Confidence 46789999999999999999999 7 7999999986421 1111222222 22 4899999999999999999
Q ss_pred EEEccCCcEEEEEEec
Q 025484 233 SANFGFDGILEGTVKK 248 (252)
Q Consensus 233 kAsy~~nGVLtItLPK 248 (252)
+|+|.+||||+|++|+
T Consensus 72 ~A~~~~dGvL~I~~P~ 87 (87)
T cd06481 72 TCSLSPSGHLHIRAPR 87 (87)
T ss_pred EEEeCCCceEEEEcCC
Confidence 9999779999999996
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.74 E-value=9.1e-18 Score=129.31 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=65.0
Q ss_pred EEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCc
Q 025484 152 GESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQ 231 (252)
Q Consensus 152 ~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dk 231 (252)
-|++++|.|.++|||++|+||+|+ + .+|.|+|+|++.. . ....+++ .++|+|+|.||.+|+.++
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~--v-~~~~L~I~ge~~~--~--~~~~~~~---------~r~F~R~~~LP~~Vd~~~ 66 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQ--V-FEGWLLIKGQHGV--R--MDEHGFI---------SRSFTRQYQLPDGVEHKD 66 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEE--E-ECCEEEEEEEEcc--c--cCCCCEE---------EEEEEEEEECCCCcchhe
Confidence 478999999999999999999999 7 7999999976421 1 1122221 147999999999999999
Q ss_pred cEEEccCCcEEEEEEe
Q 025484 232 FSANFGFDGILEGTVK 247 (252)
Q Consensus 232 IkAsy~~nGVLtItLP 247 (252)
|+|+|.+||||+|+.|
T Consensus 67 v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 67 LSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEcCCCEEEEEec
Confidence 9999636999999865
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.73 E-value=6.8e-18 Score=131.13 Aligned_cols=81 Identities=12% Similarity=0.248 Sum_probs=64.7
Q ss_pred eCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccE
Q 025484 154 SEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFS 233 (252)
Q Consensus 154 tdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIk 233 (252)
.+++|+|.++|||++|+||+|+ | .+|.|+|+|++.. + ....+ ..+|+ +|+|.|+|.||.+||.++|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~--v-~~~~L~I~ger~~-~--~e~~~----~~er~---~g~F~R~f~LP~~Vd~d~i~ 72 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVK--V-KDGKVQVSAEREN-R--YDCLG----SKKYS---YMNICKEFSLPPGVDEKDVT 72 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEec-c--cccCC----ccEEE---EEEEEEEEECCCCcChHHcE
Confidence 5789999999999999999999 7 7999999976431 1 11111 12445 69999999999999999999
Q ss_pred EEccCCcEEEEEEe
Q 025484 234 ANFGFDGILEGTVK 247 (252)
Q Consensus 234 Asy~~nGVLtItLP 247 (252)
|+|.++|||+|.-|
T Consensus 73 A~~~~~~~l~i~~~ 86 (87)
T cd06482 73 YSYGLGSVVKIETP 86 (87)
T ss_pred EEEcCCCEEEEeeC
Confidence 99943449999866
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.73 E-value=1.1e-17 Score=126.65 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=64.1
Q ss_pred CCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccEE
Q 025484 155 EDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSA 234 (252)
Q Consensus 155 dd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIkA 234 (252)
.++|.|.++|||++|+||+|+ + .++.|+|+|++. ....... +. +|+|.|+|.||.+||+++++|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~--v-~~~~L~I~g~~~-----~~~~~~~-----~~---~~~f~r~~~LP~~vd~~~i~A 69 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVK--V-SDNKLVVEGKHE-----EREDEHG-----YV---SREFTRRYQLPEGVDPDSVTS 69 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEE--E-ECCEEEEEEEEe-----eeccCCC-----EE---EEEEEEEEECCCCCChHHeEE
Confidence 369999999999999999999 7 689999997632 2211111 11 378999999999999999999
Q ss_pred EccCC-cEEEEEEec
Q 025484 235 NFGFD-GILEGTVKK 248 (252)
Q Consensus 235 sy~~n-GVLtItLPK 248 (252)
+| .| |||+|++||
T Consensus 70 ~~-~~~GvL~I~~Pk 83 (83)
T cd06526 70 SL-SSDGVLTIEAPK 83 (83)
T ss_pred Ee-CCCcEEEEEecC
Confidence 99 77 999999998
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.7e-16 Score=134.45 Aligned_cols=97 Identities=27% Similarity=0.406 Sum_probs=79.8
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
++||.|+.++|.+.++|||+.+++|+|+ +.++++|+|+|+... +.........+++.++. .|.|.|+|.||.++
T Consensus 86 ~~~v~e~~~~~~~~~~~Pgl~ke~iKv~--~~~~~~l~isGe~~~-e~e~~~~~~~~~~~E~~---~g~F~r~~~lPenv 159 (196)
T KOG0710|consen 86 PWDVKESPDAHEFKVDLPGLKKEDIKVE--VEDEKVLTISGERKK-EEEESGSGKKWKRVERK---LGKFKRRFELPENV 159 (196)
T ss_pred CcccccCCCceEEEeeCCCCCchhceEE--eccCcEEEEeccccc-ccccccCCccceeehhc---ccceEeeecCCccc
Confidence 7889999999999999999999999999 524558999976431 11111133445666676 79999999999999
Q ss_pred ccCccEEEccCCcEEEEEEecccC
Q 025484 228 DPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
+.++|+|.| +||||+|++||..+
T Consensus 160 ~~d~ikA~~-~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 160 DVDEIKAEM-ENGVLTVVVPKLEP 182 (196)
T ss_pred cHHHHHHHh-hCCeEEEEEecccc
Confidence 999999999 99999999999876
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.54 E-value=2e-14 Score=112.82 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=66.7
Q ss_pred EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484 151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ 230 (252)
Q Consensus 151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d 230 (252)
+..+++.|.|.+++.|++++||+|+ + .+|.|+|+|+.. + +. .+.+++ .++|.|+|.||..||++
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vk--v-~~~~L~V~Gkh~--~-~~-~e~g~~---------~r~F~R~~~LP~~Vd~~ 73 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVK--T-KDGFVEVSGKHE--E-QQ-KEGGIV---------SKNFTKKIQLPPEVDPV 73 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEE--E-ECCEEEEEEEEC--c-cc-CCCCEE---------EEEEEEEEECCCCCCch
Confidence 3458899999999999999999999 7 799999998632 1 11 122221 14899999999999999
Q ss_pred ccEEEccCCcEEEEEEec
Q 025484 231 QFSANFGFDGILEGTVKK 248 (252)
Q Consensus 231 kIkAsy~~nGVLtItLPK 248 (252)
+|+|++++||+|+|++|.
T Consensus 74 ~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 74 TVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred hEEEEeCCCCeEEEEcCC
Confidence 999999559999999883
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.43 E-value=6.7e-13 Score=93.77 Aligned_cols=80 Identities=30% Similarity=0.495 Sum_probs=67.0
Q ss_pred EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484 151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ 230 (252)
Q Consensus 151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d 230 (252)
++++++.|.|.+++||+.+++|+|. + .++.|+|+|...... . .... .+.|.+.+.||..++++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~--~-~~~~l~v~~~~~~~~-----~------~~~~---~~~~~~~~~L~~~i~~~ 63 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVE--V-EDNVLTISGKREEEE-----E------RERS---YGEFERSFELPEDVDPE 63 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEcCCC-----c------ceEe---eeeEEEEEECCCCcCHH
Confidence 4688999999999999999999999 7 689999997632111 1 1111 46899999999999999
Q ss_pred ccEEEccCCcEEEEEEec
Q 025484 231 QFSANFGFDGILEGTVKK 248 (252)
Q Consensus 231 kIkAsy~~nGVLtItLPK 248 (252)
+++|+| .+|+|+|+|||
T Consensus 64 ~~~~~~-~~~~l~i~l~K 80 (80)
T cd00298 64 KSKASL-ENGVLEITLPK 80 (80)
T ss_pred HCEEEE-ECCEEEEEEcC
Confidence 999999 89999999998
No 22
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.32 E-value=8.7e-12 Score=108.53 Aligned_cols=76 Identities=30% Similarity=0.510 Sum_probs=62.8
Q ss_pred eeeEEEeCC-EEEEEEEeCCCCCCC-eEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484 148 KADVGESED-DYMFRIALPGVKRDD-DEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG 225 (252)
Q Consensus 148 ~VDI~Etdd-~yvV~adLPGV~KED-I~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~ 225 (252)
.|++.+.++ .++|.|+||||++++ |+|.++. ..+.|+|+. .+.|.+++.||.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~-------------------------~~~~~krv~L~~ 146 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRV-------------------------GEKYLKRVALPW 146 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEec-------------------------CCceEeeEecCC
Confidence 789999888 699999999999999 9998332 356777762 135779999998
Q ss_pred CcccCccEEEccCCcEEEEEEecccC
Q 025484 226 PVDPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 226 ~VD~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
. +++.++|+| +||||+|+|-|.+.
T Consensus 147 ~-~~e~~~~t~-nNgILEIri~~~~~ 170 (177)
T PF05455_consen 147 P-DPEITSATF-NNGILEIRIRRTEE 170 (177)
T ss_pred C-ccceeeEEE-eCceEEEEEeecCC
Confidence 7 689999999 99999999988764
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.28 E-value=2.4e-11 Score=89.53 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=63.7
Q ss_pred EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484 151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ 230 (252)
Q Consensus 151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d 230 (252)
++++++.+.|.+++||+++++++|+ + +++.|.|+| ..|.+.+.||..||++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~--~-~~~~l~i~~--------------------------~~~~~~~~l~~~I~~e 51 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIF--C-SDLYLKVNF--------------------------PPYLFELDLAAPIDDE 51 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEE--E-ecCEEEEcC--------------------------CCEEEEEeCccccccc
Confidence 4688999999999999999999999 7 678888872 1478999999999999
Q ss_pred ccEEEccCCcEEEEEEecccC
Q 025484 231 QFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 231 kIkAsy~~nGVLtItLPK~e~ 251 (252)
+++|++ .+|.|+|+|+|+++
T Consensus 52 ~~~~~~-~~~~l~i~L~K~~~ 71 (78)
T cd06469 52 KSSAKI-GNGVLVFTLVKKEP 71 (78)
T ss_pred ccEEEE-eCCEEEEEEEeCCC
Confidence 999999 99999999999864
No 24
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-11 Score=105.14 Aligned_cols=90 Identities=17% Similarity=0.306 Sum_probs=74.5
Q ss_pred CceeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484 146 VGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG 225 (252)
Q Consensus 146 ~~~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~ 225 (252)
.+...+..+++.|.|.+|+-.+++++|+|. + .++.|.|.|+ .+.+.++. ++. . ..|.|++.||.
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk--~-~~~~l~V~gk---Heer~d~~-G~v----~-----R~F~R~y~LP~ 125 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVK--T-DDNTLEVEGK---HEEKEDEH-GYV----S-----RSFVRKYLLPE 125 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEE--e-CCCEEEEEee---eccccCCC-CeE----E-----EEEEEEecCCC
Confidence 346788999999999999999999999999 7 6889999976 22222222 221 1 37999999999
Q ss_pred CcccCccEEEccCCcEEEEEEecccC
Q 025484 226 PVDPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 226 ~VD~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
+||+++|+++++.||+|+|+.||...
T Consensus 126 ~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 126 DVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred CCChhheEEeeCCCceEEEEccCCCC
Confidence 99999999999999999999999764
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.99 E-value=3.5e-09 Score=76.89 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=66.1
Q ss_pred EEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccC
Q 025484 151 VGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQ 230 (252)
Q Consensus 151 I~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~d 230 (252)
++++++.+.|.+.+||+.+++++|. + .++.|+|++.. . . .+.|.+.+.|+.+|+++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~--~-~~~~l~i~~~~---~-----~-------------~~~~~~~~~L~~~I~~~ 56 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVE--F-TPKSLTVSVKG---G-----G-------------GKEYLLEGELFGPIDPE 56 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEE--E-ecCEEEEEeeC---C-----C-------------CCceEEeeEccCccchh
Confidence 3578999999999999999999999 7 68899999641 1 0 24688999999999999
Q ss_pred ccEEEccCCcEEEEEEecccC
Q 025484 231 QFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 231 kIkAsy~~nGVLtItLPK~e~ 251 (252)
+.++++ .+|.|+|+|+|+++
T Consensus 57 ~s~~~~-~~~~l~i~L~K~~~ 76 (84)
T cd06463 57 ESKWTV-EDRKIEITLKKKEP 76 (84)
T ss_pred hcEEEE-eCCEEEEEEEECCC
Confidence 999999 89999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.75 E-value=3.9e-08 Score=73.02 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=66.6
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
|++++++.+.|.+.+||+.+++++|. + .++.|.|++.. + . .+.|...+.|...|++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~--~-~~~~l~i~~~~--~------~-------------~~~~~~~~~L~~~I~~ 56 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVE--F-NEQSLSVSIIL--P------G-------------GSEYQLELDLFGPIDP 56 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEE--E-ecCEEEEEEEC--C------C-------------CCeEEEecccccccCc
Confidence 68899999999999999999999999 6 67899998531 0 0 1368888999999999
Q ss_pred CccEEEccCCcEEEEEEecccC
Q 025484 230 QQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK~e~ 251 (252)
+..++++ .+|.|+|+|.|.++
T Consensus 57 ~~s~~~~-~~~~vei~L~K~~~ 77 (84)
T cd06466 57 EQSKVSV-LPTKVEITLKKAEP 77 (84)
T ss_pred hhcEEEE-eCeEEEEEEEcCCC
Confidence 9999999 89999999999874
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.15 E-value=4.2e-05 Score=55.15 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=61.7
Q ss_pred eeeEEEeCCEEEEEEEeCCC--CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484 148 KADVGESEDDYMFRIALPGV--KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG 225 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV--~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~ 225 (252)
..+++++++.+.|.+.+++. +++|++|. + .++.|.|+.... ++ ..|.-.+.|..
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~--~-~~~~l~v~~~~~--------~~-------------~~~~~~~~L~~ 57 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVD--F-TDTSLSVSIKSG--------DG-------------KEYLLEGELFG 57 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEE--E-ETTEEEEEEEET--------TS-------------CEEEEEEEBSS
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEE--E-EeeEEEEEEEcc--------CC-------------ceEEEEEEEee
Confidence 58899999999999999665 49999999 7 688999985311 10 14677788999
Q ss_pred CcccCccEEEccCCcEEEEEEec
Q 025484 226 PVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 226 ~VD~dkIkAsy~~nGVLtItLPK 248 (252)
.|+++..+.++ .++.|+|+|.|
T Consensus 58 ~I~~~~s~~~~-~~~~i~i~L~K 79 (79)
T PF04969_consen 58 EIDPDESTWKV-KDNKIEITLKK 79 (79)
T ss_dssp -BECCCEEEEE-ETTEEEEEEEB
T ss_pred eEcchhcEEEE-ECCEEEEEEEC
Confidence 99999999999 89999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.99 E-value=8e-05 Score=58.76 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=64.8
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
+++++++.+.+.|.+.+||+ ++++|. + ..+.|.|++. +. .++ ..|.-.+.|...|
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~--~-~~~~l~v~~~---~~-----~~~------------~~y~~~~~L~~~I 56 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIK--L-EPTSLSFKAK---GG-----GGG------------KKYEFDLEFYKEI 56 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEE--E-ECCEEEEEEE---cC-----CCC------------eeEEEEeEhhhhc
Confidence 68999999999999999998 788888 6 6889999964 11 011 1367778999999
Q ss_pred ccCccEEEccCCcEEEEEEeccc
Q 025484 228 DPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e 250 (252)
++++.+.++ .++.|+|+|.|++
T Consensus 57 ~pe~s~~~v-~~~kveI~L~K~~ 78 (108)
T cd06465 57 DPEESKYKV-TGRQIEFVLRKKE 78 (108)
T ss_pred cccccEEEe-cCCeEEEEEEECC
Confidence 999999999 8999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.96 E-value=3.7e-05 Score=70.32 Aligned_cols=65 Identities=25% Similarity=0.424 Sum_probs=56.6
Q ss_pred CCEEEEEEEeCCC-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcccCccE
Q 025484 155 EDDYMFRIALPGV-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFS 233 (252)
Q Consensus 155 dd~yvV~adLPGV-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~dkIk 233 (252)
.+.++|+++|||+ +..+|+|. | .+..|.|... ...|.-.+.||..||.+.++
T Consensus 260 p~~lvv~i~LP~~~s~~~i~Ld--V-~~~~l~l~~~------------------------~~~y~L~l~LP~~V~~~~~~ 312 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLD--V-SEDRLSLSSP------------------------KPKYRLDLPLPYPVDEDNGK 312 (328)
T ss_pred CceEEEEEECCCcCccceeEEE--E-eCCEEEEEeC------------------------CCceEEEccCCCcccCCCce
Confidence 6899999999999 78999999 8 7889998832 12577889999999999999
Q ss_pred EEccCC--cEEEEEEe
Q 025484 234 ANFGFD--GILEGTVK 247 (252)
Q Consensus 234 Asy~~n--GVLtItLP 247 (252)
|+| .. ++|+||||
T Consensus 313 Akf-~~~~~~L~vtlp 327 (328)
T PF08190_consen 313 AKF-DKKTKTLTVTLP 327 (328)
T ss_pred EEE-ccCCCEEEEEEE
Confidence 999 44 89999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.88 E-value=9.6e-05 Score=55.62 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=64.4
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
|++++++.+.|.+.++|+.++++.|+ + .++.|.+++... .+ ..|.-.+.|...|++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~--~-~~~~l~~~~~~~--------~~-------------~~y~~~~~L~~~I~p 56 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVE--F-EKRELSATVKLP--------SG-------------NDYSLKLHLLHPIVP 56 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEE--E-eCCEEEEEEECC--------CC-------------CcEEEeeecCceecc
Confidence 68899999999999999999999999 6 688999986411 11 146677789999999
Q ss_pred CccEEEccCCcEEEEEEecccC
Q 025484 230 QQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK~e~ 251 (252)
++.+.+. ..+-++|+|.|+++
T Consensus 57 ~~s~~~v-~~~kiei~L~K~~~ 77 (84)
T cd06489 57 EQSSYKI-LSTKIEIKLKKTEA 77 (84)
T ss_pred hhcEEEE-eCcEEEEEEEcCCC
Confidence 9999999 78889999999864
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.73 E-value=0.0003 Score=52.42 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=59.6
Q ss_pred eEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcc
Q 025484 150 DVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD 228 (252)
Q Consensus 150 DI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD 228 (252)
+++++++.+.|.+.+| |++++|++|+ + .++.|.|+.. + + .+.-.-.|...|+
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~--~-~~~~l~v~~~---~-------~--------------~~~l~~~L~~~I~ 54 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVE--I-TPKHLKVGVK---G-------G--------------EPLLDGELYAKVK 54 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEE--E-EcCEEEEEEC---C-------C--------------CceEcCcccCcee
Confidence 4788999999999997 7899999999 7 6789999842 1 0 1112224888999
Q ss_pred cCccEEEccCC-cEEEEEEecccC
Q 025484 229 PQQFSANFGFD-GILEGTVKKQKH 251 (252)
Q Consensus 229 ~dkIkAsy~~n-GVLtItLPK~e~ 251 (252)
++...-++ .+ ..|+|+|+|+++
T Consensus 55 ~~~s~w~~-~~~~~v~i~L~K~~~ 77 (85)
T cd06467 55 VDESTWTL-EDGKLLEITLEKRNE 77 (85)
T ss_pred EcCCEEEE-eCCCEEEEEEEECCC
Confidence 99999999 78 899999999875
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.52 E-value=0.001 Score=50.52 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=58.3
Q ss_pred eEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcc
Q 025484 150 DVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD 228 (252)
Q Consensus 150 DI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD 228 (252)
+++++.+.+.|.+.+| |+.++|++|+ + ..+.|.+... ++ . .+ -.-+|...|+
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~--~-~~~~l~v~~~---~~-------~-------------~~-~~g~L~~~I~ 54 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIK--F-LPDHISIALK---DQ-------A-------------PL-LEGKLYSSID 54 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEE--E-ecCEEEEEeC---CC-------C-------------eE-EeCcccCccc
Confidence 5789999999999996 9999999999 7 6788988731 11 1 11 2236888999
Q ss_pred cCccEEEccCCc-EEEEEEecccC
Q 025484 229 PQQFSANFGFDG-ILEGTVKKQKH 251 (252)
Q Consensus 229 ~dkIkAsy~~nG-VLtItLPK~e~ 251 (252)
++...=+. .+| .|+|+|.|+++
T Consensus 55 ~d~Stw~i-~~~~~l~i~L~K~~~ 77 (85)
T cd06493 55 HESSTWII-KENKSLEVSLIKKDE 77 (85)
T ss_pred ccCcEEEE-eCCCEEEEEEEECCC
Confidence 99988887 677 79999999874
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.50 E-value=0.0016 Score=49.72 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=65.1
Q ss_pred eeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCcc
Q 025484 149 ADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD 228 (252)
Q Consensus 149 VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD 228 (252)
.|++++++.+.|.+-+.|+.++++.+. + +++.|+++.... .+ -.|.-.+.|-.+|+
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~--~-~~~~l~v~~~~~--------~~-------------~~y~~~l~L~~~I~ 58 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVE--A-NSTVLTIHIVFE--------GN-------------KEFQLDIELWGVID 58 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEE--e-cCCEEEEEEECC--------CC-------------ceEEEEeeccceEC
Confidence 689999999999999999999999999 7 577888874311 01 14777888999999
Q ss_pred cCccEEEccCCcEEEEEEecccC
Q 025484 229 PQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 229 ~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
+++.+-+. ..+-++|+|.|+++
T Consensus 59 ~~~s~~~v-~~~kvei~L~K~~~ 80 (87)
T cd06488 59 VEKSSVNM-LPTKVEIKLRKAEP 80 (87)
T ss_pred hhHcEEEe-cCcEEEEEEEeCCC
Confidence 99998888 78999999999874
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.49 E-value=0.0014 Score=49.78 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=63.2
Q ss_pred eeeEEEeCCEEEEEEEeCCCCC---CCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEE-C
Q 025484 148 KADVGESEDDYMFRIALPGVKR---DDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITIN-L 223 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~K---EDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~-L 223 (252)
..+++++++.+.|.+.+|++.+ ++++|+ + ..+.|.|++. +. ++. .|.-.+. |
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~--~-~~~~l~v~~~---~~-----~~~-------------~~~~~~~~L 58 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVE--F-TERSFELKVH---DL-----NGK-------------NYRFTINRL 58 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEE--e-cCCEEEEEEE---CC-----CCc-------------EEEEEehHh
Confidence 3678999999999999999986 999999 6 6889999853 10 111 2444453 8
Q ss_pred CCCcccCccEEEccCCcEEEEEEecccC
Q 025484 224 PGPVDPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 224 P~~VD~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
-..|++++.+.+. ..+-++|+|.|+++
T Consensus 59 ~~~I~~e~s~~~~-~~~ki~i~L~K~~~ 85 (92)
T cd06468 59 LKKIDPEKSSFKV-KTDRIVITLAKKKE 85 (92)
T ss_pred hCccCccccEEEE-eCCEEEEEEEeCCC
Confidence 8999999999999 78889999999875
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.48 E-value=0.028 Score=44.18 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=59.1
Q ss_pred eeeEEEeCCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCC
Q 025484 148 KADVGESEDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGP 226 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~ 226 (252)
..++..+.+++.|.+.|| |+++.|++|. + ..+.|.|.-+ |+ .+ - .| .|...
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~--i-~~~~l~V~~~---g~--------~~----l----~G------~L~~~ 58 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCK--L-GSRDISLAVK---GQ--------EV----L----KG------KLFDS 58 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEE--E-EcCEEEEEEC---CE--------EE----E----cC------cccCc
Confidence 567999999999999998 8999999999 7 6889988831 21 00 0 23 47788
Q ss_pred cccCccEEEccCCc-EEEEEEeccc
Q 025484 227 VDPQQFSANFGFDG-ILEGTVKKQK 250 (252)
Q Consensus 227 VD~dkIkAsy~~nG-VLtItLPK~e 250 (252)
|+++...=++ ++| +|.|+|.|.+
T Consensus 59 I~~destWtl-ed~k~l~I~L~K~~ 82 (93)
T cd06494 59 VVADECTWTL-EDRKLIRIVLTKSN 82 (93)
T ss_pred cCcccCEEEE-ECCcEEEEEEEeCC
Confidence 9999999999 666 5899999985
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.33 E-value=0.068 Score=42.92 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=58.4
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
.++++++.+.+.|++.+|+ ..|++|+ + +++.|+++|. +. ++. .|.-.+.|=..|
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~--l-~~~~l~f~~~---~~-----~g~-------------~y~~~l~l~~~I 56 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVD--F-EKSKLTFSCL---NG-----DNV-------------KIYNEIELYDRV 56 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEE--E-ecCEEEEEEE---CC-----CCc-------------EEEEEEEeeccc
Confidence 7999999999999999999 4788888 6 5789999974 11 111 244566777889
Q ss_pred ccCccEEEccCCcEEEEEEeccc
Q 025484 228 DPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e 250 (252)
++++.+-+. ..--++|.|.|++
T Consensus 57 ~pe~Sk~~v-~~r~ve~~L~K~~ 78 (106)
T cd00237 57 DPNDSKHKR-TDRSILCCLRKGK 78 (106)
T ss_pred CcccCeEEe-CCceEEEEEEeCC
Confidence 998877776 4556888899975
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.85 E-value=0.046 Score=51.62 Aligned_cols=79 Identities=9% Similarity=0.129 Sum_probs=64.6
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
..|+|.+++.++|.+-+.|+.++++.|+ + .++.|.|+-... .+ -.|.-.+.|-..|
T Consensus 158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~--~-~~~~l~v~~~~~--------~~-------------~~y~~~~~L~~~I 213 (356)
T PLN03088 158 RHEFYQKPEEVVVTVFAKGVPAENVNVD--F-GEQILSVVIEVP--------GE-------------DAYHLQPRLFGKI 213 (356)
T ss_pred ccceeecCCEEEEEEEecCCChHHcEEE--e-ecCEEEEEEecC--------CC-------------cceeecccccccc
Confidence 6899999999999999999999999999 6 678888884211 11 1355567899999
Q ss_pred ccCccEEEccCCcEEEEEEecccC
Q 025484 228 DPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
++++.+-+. .---++|+|.|+++
T Consensus 214 ~p~~s~~~v-~~~Kiei~l~K~~~ 236 (356)
T PLN03088 214 IPDKCKYEV-LSTKIEIRLAKAEP 236 (356)
T ss_pred cccccEEEE-ecceEEEEEecCCC
Confidence 999998888 67789999999864
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.51 E-value=0.3 Score=37.49 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=55.2
Q ss_pred eEEEeCCEEEEEEEeCC--CCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 150 DVGESEDDYMFRIALPG--VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 150 DI~Etdd~yvV~adLPG--V~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
|+|.+++.++|.+=..+ ..+.++.+. . ..+.|.|+-.. . + -.|...+.|=..|
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~--~-~~~~l~v~~~~-------~--~-------------~~~~~~~~L~~~I 56 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVD--D-QQRELRVEIIL-------G--D-------------KSYLLHLDLSNEV 56 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEE--C-CCCEEEEEEEC-------C--C-------------ceEEEeeeccccC
Confidence 89999999999999885 556666666 5 56688887321 0 0 1367777898999
Q ss_pred ccCccEEEccC--CcEEEEEEecccC
Q 025484 228 DPQQFSANFGF--DGILEGTVKKQKH 251 (252)
Q Consensus 228 D~dkIkAsy~~--nGVLtItLPK~e~ 251 (252)
+++. +.++ . -|-++|+|.|+++
T Consensus 57 ~~~~-~~~~-~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 57 QWPC-EVRI-STETGKIELVLKKKEP 80 (87)
T ss_pred CCCc-EEEE-cccCceEEEEEEcCCC
Confidence 8875 5555 4 6799999999875
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.16 E-value=0.062 Score=47.83 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=59.0
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
..|+|++...++|.+-.+||.++|+.|+ + .+++|.|.-....| ..|.-...|=..|
T Consensus 5 r~DwyQt~~~vvIti~~k~v~~~~v~v~--~-s~~~l~~~~~~~~g---------------------~~~~l~~~L~~~I 60 (196)
T KOG1309|consen 5 RHDWYQTETSVVITIFAKNVPKEDVNVE--I-SENTLSIVIQLPSG---------------------SEYNLQLKLYHEI 60 (196)
T ss_pred cceeecCCceEEEEEEecCCCccceeEE--e-ecceEEEEEecCCc---------------------hhhhhhHHhcccc
Confidence 6899999999999999999999999999 8 68888877332111 1244444477788
Q ss_pred ccCccEEEccCCcEEEEEEeccc
Q 025484 228 DPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e 250 (252)
.+++.+-+. ----++|+|+|.+
T Consensus 61 ~pe~~s~k~-~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 61 IPEKSSFKV-FSTKVEITLAKAE 82 (196)
T ss_pred cccceeeEe-eeeeEEEEecccc
Confidence 888876666 4566889999865
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.02 E-value=0.6 Score=35.96 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=54.4
Q ss_pred EEEeCCEEEEEEEeC-C--CCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 151 VGESEDDYMFRIALP-G--VKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 151 I~Etdd~yvV~adLP-G--V~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
+..+.+++.|.+.|| | +++.||+|. + ..+.|.|.-+ |+ ..+ . .| .|...|
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~--i-~~~~l~v~~~---g~-------~~~-i-------~G------~L~~~V 55 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVD--I-QRKHLKVGLK---GQ-------PPI-I-------DG------ELYNEV 55 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEE--E-ecCEEEEEEC---CC-------ceE-E-------eC------cccCcc
Confidence 346788899999996 3 899999999 7 6788888721 21 100 1 13 467889
Q ss_pred ccCccEEEccCCc-EEEEEEecccC
Q 025484 228 DPQQFSANFGFDG-ILEGTVKKQKH 251 (252)
Q Consensus 228 D~dkIkAsy~~nG-VLtItLPK~e~ 251 (252)
+++...=++ ++| .|.|+|-|+++
T Consensus 56 ~~des~Wtl-ed~~~l~i~L~K~~~ 79 (87)
T cd06492 56 KVEESSWLI-EDGKVVTVNLEKINK 79 (87)
T ss_pred cccccEEEE-eCCCEEEEEEEECCC
Confidence 999988999 886 89999999853
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=91.47 E-value=2.9 Score=33.50 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=56.7
Q ss_pred eeeEEEeCCEEEEEEEeC-CC-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484 148 KADVGESEDDYMFRIALP-GV-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG 225 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLP-GV-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~ 225 (252)
..-+..|.+++.|.+.|| |+ +..||.|. + ..+.|.|.-+ +. .....+ . .| .|..
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~--i-~~~~l~v~~~---~~----~~~~~~-i-------~G------~L~~ 61 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVD--L-QSSSIRVSVR---DG----GGEKVL-M-------EG------EFTH 61 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEE--E-EcCEEEEEEe---cC----CCCceE-E-------eC------cccC
Confidence 455778999999999999 64 67899999 7 6788888732 10 001111 1 13 4778
Q ss_pred CcccCccEEEccCCc-EEEEEEeccc
Q 025484 226 PVDPQQFSANFGFDG-ILEGTVKKQK 250 (252)
Q Consensus 226 ~VD~dkIkAsy~~nG-VLtItLPK~e 250 (252)
.|+++...=++ ++| .|.|+|-|..
T Consensus 62 ~V~~des~Wtl-ed~~~l~I~L~K~~ 86 (102)
T cd06495 62 KINTENSLWSL-EPGKCVLLSLSKCS 86 (102)
T ss_pred cccCccceEEE-eCCCEEEEEEEECC
Confidence 89999999999 886 5899999975
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=55.45 E-value=1.1e+02 Score=24.71 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=48.4
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
.|.|...++ ..+.++. .++.++++ . ++++|.|+.+.. + ......+....+ ...-.-.|.||...
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~--~-~~~~L~I~~~~~--~---~~~~~~~~~~~~----~~~~~i~I~lP~~~ 130 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEIS--V-EGGTLTIKSKDR--E---SFFFKGFNFNNS----DNKSKITIYLPKDY 130 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEE--E-cCCEEEEEEecc--c---ccccceEEEccc----CCCcEEEEEECCCC
Confidence 466666444 4445555 22257777 7 789999995410 0 000011111111 13567789999998
Q ss_pred ccCccEEEccCCcEEEEE
Q 025484 228 DPQQFSANFGFDGILEGT 245 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtIt 245 (252)
..++++..- .+|=++|.
T Consensus 131 ~l~~i~i~~-~~G~i~i~ 147 (166)
T PF13349_consen 131 KLDKIDIKT-SSGDITIE 147 (166)
T ss_pred ceeEEEEEe-ccccEEEE
Confidence 888999999 88988775
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=51.47 E-value=25 Score=27.25 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=29.3
Q ss_pred CccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 214 AGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 214 ~G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
...|.-++.||. ++++.|+-++ .||.|+|+--|.
T Consensus 7 ~~~~~v~adlPG-~~kedI~V~v-~~~~L~I~ger~ 40 (87)
T cd06482 7 SSNVLASVDVCG-FEPDQVKVKV-KDGKVQVSAERE 40 (87)
T ss_pred CCEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEe
Confidence 357888999994 8999999999 999999997664
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=1.1e+02 Score=27.27 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=52.4
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
.|-+.++.+-+.+++.++-.+ +.+|. + +...|+++|+.. .+. -.|.-.|.|=..|
T Consensus 9 ~v~Waqr~~~vyltv~Ved~~--d~~v~--~-e~~~l~fs~k~~-------~d~-------------~~~~~~ief~~eI 63 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVEDAK--DVHVN--L-EPSKLTFSCKSG-------ADN-------------HKYENEIEFFDEI 63 (180)
T ss_pred cchhhhhcCeEEEEEEeccCc--cceee--c-cccEEEEEeccC-------CCc-------------eeeEEeeehhhhc
Confidence 688899999999999998655 55555 4 466899997631 111 1456677888899
Q ss_pred ccCccEEEccCCcEEEEEEeccc
Q 025484 228 DPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e 250 (252)
|+++.+-+- . +-+...++++.
T Consensus 64 dpe~sk~k~-~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 64 DPEKSKHKR-T-SRSIFCILRKK 84 (180)
T ss_pred CHhhccccc-c-ceEEEEEEEcc
Confidence 998887766 3 55555555443
No 45
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=43.23 E-value=20 Score=34.45 Aligned_cols=79 Identities=22% Similarity=0.111 Sum_probs=58.0
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
..|.-+|.+.+.|.+--|-|.+++|.+- + +.|+|.|+-+.. .. + --|.-.+.|-..|
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~--~-e~NTL~I~~q~~--------~~-------~-----~~~~~~~~Ly~ev 234 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPV--L-EGNTLSISYQPR--------RL-------R-----LWNDITISLYKEV 234 (368)
T ss_pred eeeccccceeEEEEEecCCCCcccccee--e-cCCcceeeeecc--------cc-------c-----hHHHhhhhhhhhc
Confidence 6788889999999988999999999999 8 789999993311 00 1 1345566777788
Q ss_pred ccCccEEEccCCcEEEEEEeccc
Q 025484 228 DPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e 250 (252)
+|+..+-+. ---+++|+|.|.+
T Consensus 235 ~P~~~s~k~-fsK~~e~~l~KV~ 256 (368)
T COG5091 235 YPDIRSIKS-FSKRVEVHLRKVE 256 (368)
T ss_pred Ccchhhhhh-cchhheehhhhhh
Confidence 888776666 4567777777653
No 46
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=40.76 E-value=34 Score=25.75 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.1
Q ss_pred CCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEE
Q 025484 155 EDDYMFRIALPGVKRDDDEFSCTVDPTGKILIK 187 (252)
Q Consensus 155 dd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIs 187 (252)
-..|.-.+.||.++.+.++-+ + .+|.|+|.
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~--~-~dGvL~I~ 90 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAK--Y-ENGVLKIT 90 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEE--E-ECCEEEEE
Confidence 356777788999999999988 6 69999997
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=34.38 E-value=49 Score=25.39 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.9
Q ss_pred cEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 216 PFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 216 ~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
.|.-.+.||. ++++.|+-++ ++|.|+|+--+.
T Consensus 8 ~~~v~~dlpG-~~~edI~V~v-~~~~L~I~ge~~ 39 (83)
T cd06477 8 MFQILLDVVQ-FRPEDIIIQV-FEGWLLIKGQHG 39 (83)
T ss_pred eEEEEEEcCC-CCHHHeEEEE-ECCEEEEEEEEc
Confidence 6888899996 8999999999 999999997553
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=33.35 E-value=68 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=27.5
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
..|.-.+.||. +..+.|+-.+ ++|.|+|+-.+
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~-~~~~L~I~g~~ 42 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEV-ENNQLTVTGKK 42 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 47888999996 8999999999 89999998554
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=32.77 E-value=62 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=27.8
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
..|.-.+.|| .++++.|+-++ .+|.|+|+--+
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~ 38 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKH 38 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEE
Confidence 4788899999 58999999999 89999998754
No 50
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=32.70 E-value=1.5e+02 Score=27.02 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=50.4
Q ss_pred eEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCccc
Q 025484 150 DVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDP 229 (252)
Q Consensus 150 DI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~VD~ 229 (252)
-|-.+++-+.+.+.|-||..++++|+| ..+.|-|.-+ +-.+..|++-.. .|-.+|+.
T Consensus 78 gWDQs~kfVK~yItL~GV~eenVqv~f---tp~Sldl~v~--------dlqGK~y~~~vn------------nLlk~I~v 134 (224)
T KOG3260|consen 78 GWDQSNKFVKMYITLEGVDEENVQVEF---TPMSLDLKVH--------DLQGKNYRMIVN------------NLLKPISV 134 (224)
T ss_pred CccccCCeeEEEEEeecccccceeEEe---cccceeeeee--------ecCCcceeeehh------------hhccccCh
Confidence 355678889999999999999999994 4677776622 112222322222 25556777
Q ss_pred CccEEEccCCcEEEEEEeccc
Q 025484 230 QQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 230 dkIkAsy~~nGVLtItLPK~e 250 (252)
++-+-.. +--...|.+.|.+
T Consensus 135 Eks~~kv-Ktd~v~I~~kkVe 154 (224)
T KOG3260|consen 135 EKSSKKV-KTDTVLILCKKVE 154 (224)
T ss_pred hhccccc-ccceEEEeehhhh
Confidence 7776666 5666667765544
No 51
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=32.39 E-value=54 Score=24.74 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=26.2
Q ss_pred CCEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEE
Q 025484 155 EDDYMFRIALP-GVKRDDDEFSCTVDPTGKILIK 187 (252)
Q Consensus 155 dd~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIs 187 (252)
...|.-.+.|| +++.+.|+-+ . .+|.|+|+
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~--~-~nGvL~I~ 89 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAF--L-ENGVLTVT 89 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEE--E-ECCEEEEE
Confidence 56899999999 6999999988 6 68999997
No 52
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=32.30 E-value=67 Score=22.24 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.0
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEEeccC
Q 025484 165 PGVKRDDDEFSCTVDPTGKILIKGVTTT 192 (252)
Q Consensus 165 PGV~KEDI~V~~eV~~d~~LtIsG~~~~ 192 (252)
++++..+|+|. + .+|.++|+|...+
T Consensus 12 ~~~~~~~i~v~--v-~~g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVS--V-ENGVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEE--E-ECTEEEEEEEESS
T ss_pred cccCCCeEEEE--E-ECCEEEEEeeCcH
Confidence 36777789999 7 6999999998653
No 53
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=31.72 E-value=99 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=26.7
Q ss_pred CEEEEEEEeC-CCCCCCeEEEEEeCCCCEEEEEE
Q 025484 156 DDYMFRIALP-GVKRDDDEFSCTVDPTGKILIKG 188 (252)
Q Consensus 156 d~yvV~adLP-GV~KEDI~V~~eV~~d~~LtIsG 188 (252)
..|.=.+.|| +|+.+.|.=. +..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~--l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFAS--LSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEE--eCCCCeEEEEc
Confidence 6788889999 8999999988 63599999984
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=30.89 E-value=75 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.3
Q ss_pred cEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 216 PFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 216 ~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
.|.-.+.||. +.++.|+-+. +++.|+|+--+.
T Consensus 8 ~~~v~~dlpG-~~~edI~v~v-~~~~L~I~g~~~ 39 (83)
T cd06526 8 KFQVTLDVKG-FKPEELKVKV-SDNKLVVEGKHE 39 (83)
T ss_pred eEEEEEECCC-CCHHHcEEEE-ECCEEEEEEEEe
Confidence 6889999996 8999999999 899999987654
No 55
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=30.68 E-value=78 Score=24.07 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=27.7
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
..|.-.+.||. +.++.|+-++ .||.|+|+--+
T Consensus 7 d~y~v~~dlpG-~~~edi~V~v-~~~~L~I~g~~ 38 (83)
T cd06476 7 DKYQVFLDVCH-FTPDEITVRT-VDNLLEVSARH 38 (83)
T ss_pred CeEEEEEEcCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 47888999996 8899999999 89999998654
No 56
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=30.12 E-value=96 Score=24.58 Aligned_cols=38 Identities=29% Similarity=0.545 Sum_probs=24.7
Q ss_pred cccCceEeeecCCCCCCCCccCCCeEEEEEEEccCCCceEec
Q 025484 70 EESEDYVVHDVLPPSESIPSVSEPRVHGFEFIDASGPASIFI 111 (252)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~p~vygf~~~~~~g~~~~~i 111 (252)
-.|+.|+|=.+-|..+. + ...-+||+|.+|.+...+||
T Consensus 5 YnSd~y~VV~~~~~~~~-~---~l~~gGyEIVDK~~~rEifi 42 (85)
T PF12091_consen 5 YNSDNYCVVEFPPDAGH-P---ALARGGYEIVDKNARREIFI 42 (85)
T ss_pred ecCCceEEEEecCCCCc-c---chhcCCcEEeecCCCceEEe
Confidence 35666666655333222 2 23458999999999987766
No 57
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=30.10 E-value=80 Score=24.03 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=27.8
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
..|.-.+.||. ++++.|+-+. .+|.|+|+--+
T Consensus 10 ~~~~v~~dlpG-~~~edi~V~v-~~~~L~I~g~~ 41 (86)
T cd06497 10 DKFTIYLDVKH-FSPEDLTVKV-LDDYVEIHGKH 41 (86)
T ss_pred CEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 47888999996 8999999999 89999998654
No 58
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=29.73 E-value=2.3e+02 Score=27.04 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=60.9
Q ss_pred eeeEEEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCCCc
Q 025484 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPV 227 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~~V 227 (252)
.-|+..++..++|.+=.-|.-++--.|. . ..-+|.|.-+- | .+ ...|...+.|=.-|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~ie--a-n~~~l~V~ivf--~------~g------------na~fd~d~kLwgvv 272 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIE--A-NGTTLHVSIVF--G------FG------------NASFDLDYKLWGVV 272 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceee--e-CCeEEEEEEEe--c------CC------------Cceeeccceeeeee
Confidence 5689999999999998888888887887 5 44466666221 1 00 13577778888889
Q ss_pred ccCccEEEccCCcEEEEEEecccC
Q 025484 228 DPQQFSANFGFDGILEGTVKKQKH 251 (252)
Q Consensus 228 D~dkIkAsy~~nGVLtItLPK~e~ 251 (252)
+.++.++.+ ----.+|+|+|+++
T Consensus 273 nve~s~v~m-~~tkVEIsl~k~ep 295 (320)
T KOG1667|consen 273 NVEESSVVM-GETKVEISLKKAEP 295 (320)
T ss_pred chhhceEEe-ecceEEEEEeccCC
Confidence 999999999 67789999999876
No 59
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=90 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.2
Q ss_pred EEEeC-CCCCCCeEEEEEeCCCCEEEEEEec
Q 025484 161 RIALP-GVKRDDDEFSCTVDPTGKILIKGVT 190 (252)
Q Consensus 161 ~adLP-GV~KEDI~V~~eV~~d~~LtIsG~~ 190 (252)
+.-|| ||+++.|.=+ ++.+|.|+|+|..
T Consensus 120 ~y~LP~~vdp~~V~S~--LS~dGvLtI~ap~ 148 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTST--LSSDGVLTIEAPK 148 (173)
T ss_pred EecCCCCCChhheEEe--eCCCceEEEEccC
Confidence 35577 8999999988 7789999999753
No 60
>PF14913 DPCD: DPCD protein family
Probab=26.02 E-value=3.6e+02 Score=24.44 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=48.1
Q ss_pred EEeCCEEEEEEEeCCCCCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC------
Q 025484 152 GESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG------ 225 (252)
Q Consensus 152 ~Etdd~yvV~adLPGV~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~------ 225 (252)
.+|..+|.-++-===..++--.|+++- +++.++|+-. .-.|.++|.+|+
T Consensus 92 ~dTk~~fqWRIRNLPYP~dvYsVtvd~-~~r~ivvRTt------------------------NKKYyKk~~IPDl~R~~l 146 (194)
T PF14913_consen 92 RDTKTSFQWRIRNLPYPKDVYSVTVDE-DERCIVVRTT------------------------NKKYYKKFSIPDLDRCGL 146 (194)
T ss_pred EcCccceEEEEccCCCCccceEEEEcC-CCcEEEEECc------------------------CccceeEecCCcHHhhCC
Confidence 446667777664222456777777321 2346777711 135778888885
Q ss_pred CcccCccEEEccCCcEEEEEEeccc
Q 025484 226 PVDPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 226 ~VD~dkIkAsy~~nGVLtItLPK~e 250 (252)
+.+.++++..+ .|-.|.|+-.|-.
T Consensus 147 ~l~~~~ls~~h-~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 147 PLEQSALSFAH-QNNTLIISYKKPK 170 (194)
T ss_pred Ccchhhceeee-ecCeEEEEecCcH
Confidence 35778899999 8999999988743
No 61
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=24.87 E-value=45 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=10.2
Q ss_pred CccEEEccCCcEEE
Q 025484 230 QQFSANFGFDGILE 243 (252)
Q Consensus 230 dkIkAsy~~nGVLt 243 (252)
..|+|.| +||||.
T Consensus 3 ~~I~aiY-e~Gvlk 15 (60)
T PF01954_consen 3 KVIEAIY-ENGVLK 15 (60)
T ss_dssp --EEEEE-ETTEEE
T ss_pred ceEEEEE-ECCEEE
Confidence 4589999 999996
No 62
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=24.34 E-value=38 Score=29.49 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=18.4
Q ss_pred CCCCcccCccEEEccCCcEEEEEEe
Q 025484 223 LPGPVDPQQFSANFGFDGILEGTVK 247 (252)
Q Consensus 223 LP~~VD~dkIkAsy~~nGVLtItLP 247 (252)
|-+.+..+.--+.| .||||+|.|+
T Consensus 65 l~e~~~~~~~Dv~y-~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDY-ADGVLTLKLG 88 (156)
T ss_pred HHhhcCcccccccc-ccceEEEEec
Confidence 34455556677899 9999999987
No 63
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=23.60 E-value=1.3e+02 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=28.3
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
..|.-.+.||. ++++.++-++ .++.|.|+--+.
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v-~~~~l~I~g~~~ 39 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEV-EDGVLTISGERE 39 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEe
Confidence 36888999998 8999999999 899999986654
No 64
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=23.49 E-value=2.2e+02 Score=24.67 Aligned_cols=12 Identities=8% Similarity=0.332 Sum_probs=10.1
Q ss_pred CccEEEEEECCC
Q 025484 214 AGPFSITINLPG 225 (252)
Q Consensus 214 ~G~F~R~I~LP~ 225 (252)
+|.|+-++++|.
T Consensus 68 yG~~ear~k~~~ 79 (212)
T cd02175 68 YGRYEVRMKPAK 79 (212)
T ss_pred eeEEEEEEEcCC
Confidence 588999999885
No 65
>PRK10743 heat shock protein IbpA; Provisional
Probab=22.29 E-value=1.2e+02 Score=25.28 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=21.9
Q ss_pred cEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 216 PFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 216 ~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
.|.-.+.|| .++.+.|+-++ ++|+|+|+--+
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~ 76 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAH 76 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEE
Confidence 355555677 47788888888 78888887543
No 66
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=22.15 E-value=1.1e+02 Score=23.14 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=27.4
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
..|.-.+.||. ++++.|+-+. .+|.|+|+--+
T Consensus 7 ~~~~v~~dlpG-~~~edi~V~v-~~~~L~I~g~~ 38 (84)
T cd06498 7 DKFSVNLDVKH-FSPEELKVKV-LGDFIEIHGKH 38 (84)
T ss_pred ceEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 47888899986 8999999999 89999998643
No 67
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=22.05 E-value=1.7e+02 Score=22.00 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=26.4
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEecc
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQ 249 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK~ 249 (252)
..|.-.+.|| .++.+.++-++ ++|.|.|+--+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 5788899999 58899999999 899999987654
No 68
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=21.85 E-value=1.5e+02 Score=22.57 Aligned_cols=32 Identities=9% Similarity=0.296 Sum_probs=27.6
Q ss_pred ccEEEEEECCCCcccCccEEEccCCcEEEEEEec
Q 025484 215 GPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248 (252)
Q Consensus 215 G~F~R~I~LP~~VD~dkIkAsy~~nGVLtItLPK 248 (252)
..|.-.+.||. ++++.|+-+. ++|.|+|+--|
T Consensus 8 ~~~~v~~dlpG-~~pedi~V~v-~~~~L~I~ger 39 (81)
T cd06479 8 DTYQFAVDVSD-FSPEDIIVTT-SNNQIEVHAEK 39 (81)
T ss_pred CeEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEE
Confidence 36888899994 8999999999 89999998655
No 69
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=20.93 E-value=6.1e+02 Score=22.71 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=51.0
Q ss_pred eeeEEEeCCEEEEEEEeC-CC-CCCCeEEEEEeCCCCEEEEEEeccCCceeeccCCceEEEEEeecCCCccEEEEEECCC
Q 025484 148 KADVGESEDDYMFRIALP-GV-KRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPG 225 (252)
Q Consensus 148 ~VDI~Etdd~yvV~adLP-GV-~KEDI~V~~eV~~d~~LtIsG~~~~gErk~~~~~~~~~~eer~~cp~G~F~R~I~LP~ 225 (252)
..-+..|=.++.|.+.+| |+ +..+|.+. + ....|.|.-. |+ ..+ + .|. |..
T Consensus 20 ~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~--I-q~~hI~V~~k---g~-------~~i-l-------dG~------L~~ 72 (179)
T KOG2265|consen 20 KYTWDQTLEEVEIQIPVPPGTAKSKDVHCS--I-QSKHIKVGLK---GQ-------PPI-L-------DGE------LSH 72 (179)
T ss_pred ceeeeeehhheEEEeecCCCCcccceEEEE--e-eeeEEEEecC---CC-------Cce-e-------cCc------ccc
Confidence 455777778888887776 77 78888888 7 6777777621 21 111 1 233 566
Q ss_pred CcccCccEEEccCCcEEEEEEeccc
Q 025484 226 PVDPQQFSANFGFDGILEGTVKKQK 250 (252)
Q Consensus 226 ~VD~dkIkAsy~~nGVLtItLPK~e 250 (252)
.|+.+...-++ ++|.+.|.+-|+.
T Consensus 73 ~vk~des~Wti-Ed~k~i~i~l~K~ 96 (179)
T KOG2265|consen 73 SVKVDESTWTI-EDGKMIVILLKKS 96 (179)
T ss_pred ccccccceEEe-cCCEEEEEEeecc
Confidence 78888889999 8887766655543
Done!