RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025484
(252 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 1e-07
Identities = 53/296 (17%), Positives = 87/296 (29%), Gaps = 103/296 (34%)
Query: 25 SHGESTPTLASPT------SQAK-RHIDDIEESTDYVVHDIEES---E------DYVVHD 68
SHG L PT SQ + + + E T+ D E + E YV
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 69 IEESE-----------------DYV----VHDV---LPPSESIPSVSEPRVHGFEFIDAS 104
+E S+ Y+ +H + L V + I
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-----IKNY 126
Query: 105 GPASIFIPSRPTKTEWAKLRAATKSG----FALTGVATLGQVGPHVGKADVGESEDDY-- 158
A I K + L A G A+ G GQ G ++ DY
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG----GQ----------GNTD-DYFE 171
Query: 159 ----MFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFE----MQTQN 210
+++ V + + + + L + + TT + F+Q ++ +
Sbjct: 172 ELRDLYQTYHVLVG----DL---IKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPS 223
Query: 211 LTPAGPF--SITINLP-----------------GPVDPQQFSANF-GFDGILEGTV 246
TP + SI I+ P G P + + G G +G V
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLV 278
Score = 28.5 bits (63), Expect = 2.5
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 9 VTPESSMLESNDEPSGSHGESTPT--LA---SPTSQAKRHID 45
P +S+ S E S + E P+ L+ Q + +++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 47.4 bits (113), Expect = 4e-07
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 14/140 (10%)
Query: 110 FIPSRPTKTEWAKLRAATKSGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKR 169
+ ++ AA +S G+ G+ + + E + LPGV +
Sbjct: 23 MTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPI---SIIEGDQHIKVIAWLPGVNK 79
Query: 170 DDDEFSCTVDPTGKIL-IKGVTTTGEKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVD 228
+D ++ G L I+ + + ++ E+ + TI LP V
Sbjct: 80 ED----IILNAVGDTLEIRAKRSPLMITESERIIYSEIPEE-----EEIYRTIKLPATVK 130
Query: 229 PQQFSANFGFDGILEGTVKK 248
+ SA F +G+L + K
Sbjct: 131 EENASAKFE-NGVLSVILPK 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 44.8 bits (107), Expect = 1e-06
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
+ D+ E + ++ LPG+ V IL + GE+ +
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQ----IEVQMDKGIL----SIRGERKSES-----STE 52
Query: 208 TQNLT----PAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
T+ + G F LP D +A +G+LE + K
Sbjct: 53 TERFSRIERRYGSFHRRFALPDSADADGITAAGR-NGVLEIRIPK 96
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 43.9 bits (104), Expect = 6e-06
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 20/127 (15%)
Query: 129 SGFALTGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKG 188
+ G T + D E+ + ++F+ LPGVK+++ V+ G +L
Sbjct: 29 PAISGGGSETAAFANARM---DWKETPEAHVFKADLPGVKKEE--VKVEVED-GNVL--- 79
Query: 189 VTTTGEKSVNKFSQVFEMQTQNLT----PAGPFSITINLPGPVDPQQFSANFGFDGILEG 244
+GE++ K E + +G F L ++ A +G+L
Sbjct: 80 -VVSGERTKEK-----EDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE-NGVLTV 132
Query: 245 TVKKQKH 251
TV K +
Sbjct: 133 TVPKAEV 139
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 42.6 bits (101), Expect = 1e-05
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
D+ E + L G ++ V +++I+ E V +Q
Sbjct: 26 PVDMYEEGGYLVVVADLAGFNKEK--IKARVSGQNELIIEAEREITEPGVKYLTQRP--- 80
Query: 208 TQNLTPAGPFSITINLPGPVDP-QQFSANFGFDGILEGTVKKQK 250
I LP V + S + +G+L +
Sbjct: 81 -------KYVRKVIRLPYNVAKDAEISGKYE-NGVLTIRIPIAG 116
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 33.6 bits (77), Expect = 0.012
Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 16/102 (15%)
Query: 147 GKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEM 206
A V + + + ++ S V + + ++
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEE--ISVKVVG-DHVEVHARHEERPDEHGFIAR---- 54
Query: 207 QTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKK 248
F LP VDP ++ +G+L
Sbjct: 55 ---------EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATP 87
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 33.7 bits (77), Expect = 0.014
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 147 GKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEM 206
G ++V D ++ + + +D + V + I G + S
Sbjct: 3 GISEVRSDRDKFVIFLDVKHFSPED--LTVKVQE-DFVEIHGKHNERQDDHGYIS----- 54
Query: 207 QTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
F LP VD S + DG+L + K
Sbjct: 55 --------REFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIP 90
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 34.2 bits (78), Expect = 0.020
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 147 GKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEM 206
G +++ +D + + + + E V I + G + E
Sbjct: 64 GLSEMRLEKDRFSVNLDVKHFSPE--ELKVKVLG-DVIEVHG-------------KHEER 107
Query: 207 QTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
Q ++ + F +P VDP +++ DG+L +++
Sbjct: 108 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQ 151
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 30.4 bits (69), Expect = 0.12
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 153 ESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLT 212
+ D + + + D+ + G + I G + Q ++
Sbjct: 4 HTADRWRVSLDVNHFAPDE--LTVKTKD-GVVEITG-------------KHAARQDEHGY 47
Query: 213 PAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
+ F+ LP VDP Q S++ +G L K
Sbjct: 48 ISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK 85
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 28.9 bits (65), Expect = 0.47
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 16/98 (16%)
Query: 153 ESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNLT 212
+D + + + ++ V I + G + S+
Sbjct: 3 MEKDRFSVNLDVKHFSPEE--LKVKVLG-DVIEVHGKHEERQDEHGFISR---------- 49
Query: 213 PAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
F +P VDP +++ DG+L +++
Sbjct: 50 ---EFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQ 84
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein
structure initiative, midwest center for structural
genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 30.4 bits (69), Expect = 0.50
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 178 VDPTGKILIKGVTTTGEKSVNKF-SQVFE-----MQTQNLTPAGPFSITINLPGPVDPQQ 231
+ G++LI E + +++ QT SI I LPG V+ +Q
Sbjct: 125 HELGGEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQ 184
Query: 232 ----FSANFGFDGI 241
++ +
Sbjct: 185 GIVLQMPHYNVKNL 198
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 29.1 bits (66), Expect = 1.2
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 178 VDPTGKILIKGVTTT-----GEKSVNKFSQVFE--MQTQNLTPAGPFSITINLPGPVDPQ 230
+ G + K T G+ V + + N+ I + PG VD +
Sbjct: 23 LTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIE 82
Query: 231 Q----FSANFGF 238
+ + N +
Sbjct: 83 KGTVVGAYNLNW 94
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2,
protein structure initiative, joint center structural
genomics, JCSG; 2.46A {Thermotoga maritima} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 380
Score = 28.0 bits (63), Expect = 3.3
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 178 VDPTGKILIK-----GVTTTGEKSVNKFSQVFE--MQTQNLTPAGPFSITINLPGPVDPQ 230
+D + IL + E+++N ++ + + ++T+ PGP+D +
Sbjct: 104 IDASMNILAHEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTE 163
Query: 231 Q----FSANFGFDGI 241
+ NF I
Sbjct: 164 RGIIIDPRNFPLSQI 178
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 27.2 bits (60), Expect = 5.4
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 32 TLASPTSQAKRHIDDIEESTDYVVHDIEESEDYVVHD---IEESEDYVVHDVLPPSESIP 88
LA R I + + ++ ++I + + I ED V+H + IP
Sbjct: 298 ALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIP 357
Query: 89 SVSEPRVH 96
+P++H
Sbjct: 358 RAQQPQIH 365
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 7.7
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 6 QYIVTPESSM-LESNDEPSGSHGESTPTLA 34
Q + ++S+ L ++D S P LA
Sbjct: 20 QALKKLQASLKLYADD--------SAPALA 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.131 0.376
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,800,625
Number of extensions: 223510
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 22
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.5 bits)