RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025484
         (252 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 12/118 (10%)

Query: 134 TGVATLGQVGPHVGKADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTG 193
           TG+   G+    +    + E +        LPGV ++D             +    +   
Sbjct: 1   TGIQISGKGFMPI---SIIEGDQHIKVIAWLPGVNKED--IILNAVGDTLEIRAKRSPLM 55

Query: 194 EKSVNKFSQVFEMQTQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQKH 251
                +       +            TI LP  V  +  SA F  +G+L   + K + 
Sbjct: 56  ITESERIIYSEIPEE------EEIYRTIKLPATVKEENASAKFE-NGVLSVILPKAES 106


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 148 KADVGESEDDYMFRIALPGVKRDDDEFSCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQ 207
           + D  E+ + ++F+  LPGVK+++ +          +       +GE++  K  +  +  
Sbjct: 44  RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVV-------SGERTKEKEDKNDKWH 96

Query: 208 TQNLTPAGPFSITINLPGPVDPQQFSANFGFDGILEGTVKKQK 250
                 +G F     L      ++  A    +G+L  TV K +
Sbjct: 97  RVER-SSGKFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVPKAE 137


>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein
           abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 139

 Score = 25.9 bits (57), Expect = 2.8
 Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 9/98 (9%)

Query: 43  HIDDIEESTDYVVHDIEESEDYVVHDIEESEDYVVHDVLPP----SESIPSVSEPRVHGF 98
           H  +I+     +V   +    +++      ++Y             +     ++ +    
Sbjct: 9   HSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFDE-TKVQYGLA 67

Query: 99  EFIDASG--PASIFIPSRP--TKTEWAKLRAATKSGFA 132
                       I I   P     +     AA  +  A
Sbjct: 68  RVSPPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVA 105


>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
           catalytic domain {Bacillus subtilis [TaxId: 1423]}
          Length = 275

 Score = 26.4 bits (57), Expect = 3.4
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 29  STPTLASPTSQAKRHIDDIEESTDYVVHDIEESEDYVVHDIEESE 73
           +  T    T  A  H DD E +   +   I++ +   V +I   E
Sbjct: 226 TIATRYIHTHAAMLHRDDYENAVKLITEVIKKLDRKTVDEITYQE 270


>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 25.1 bits (55), Expect = 7.6
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 175 SCTVDPTGKILIKGVTTTGEKSVNKFSQVFEMQTQNL 211
           +CTV+P   IL K V   G     KF++        +
Sbjct: 27  NCTVNPKESIL-KRVKDIGYIFKEKFAKAVGQGCVEI 62


>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 117

 Score = 24.4 bits (53), Expect = 8.0
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 157 DYMFRIALPGVKRDDDEFSCTVDPTGKILI--KGVTTTGEKSVNKFSQVFEMQTQN 210
           +    +    V+ +     C   P    ++   G     +    KFSQVF +    
Sbjct: 48  NKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSG 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 921,422
Number of extensions: 41834
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.0 bits)