Query 025485
Match_columns 252
No_of_seqs 171 out of 1256
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1324 Dihydrofolate reductas 100.0 3.3E-49 7.1E-54 332.5 15.4 181 67-247 1-181 (190)
2 PF00186 DHFR_1: Dihydrofolate 100.0 5.4E-46 1.2E-50 313.1 18.5 159 69-246 1-161 (161)
3 PRK10769 folA dihydrofolate re 100.0 3.9E-44 8.6E-49 301.3 17.9 156 70-247 2-159 (159)
4 COG0262 FolA Dihydrofolate red 100.0 7E-41 1.5E-45 283.4 18.6 165 69-247 1-167 (167)
5 PTZ00164 bifunctional dihydrof 100.0 4.1E-40 8.9E-45 319.7 20.4 178 67-248 7-190 (514)
6 cd00209 DHFR Dihydrofolate red 100.0 1.1E-34 2.4E-39 242.8 18.3 158 70-245 1-158 (158)
7 PRK00478 scpA segregation and 100.0 8.5E-35 1.8E-39 282.5 17.5 155 69-248 1-155 (505)
8 PF01872 RibD_C: RibD C-termin 99.7 1.5E-17 3.2E-22 143.0 12.8 150 68-227 1-190 (200)
9 PRK05625 5-amino-6-(5-phosphor 99.6 1.6E-14 3.5E-19 126.2 17.2 140 67-217 2-185 (217)
10 TIGR00227 ribD_Cterm riboflavi 99.6 3.9E-14 8.5E-19 123.2 15.4 140 67-216 2-185 (216)
11 TIGR00326 eubact_ribD riboflav 99.4 1.7E-12 3.8E-17 121.2 14.9 135 67-211 140-308 (344)
12 PRK14059 hypothetical protein; 99.3 3.8E-10 8.3E-15 101.5 18.8 168 66-247 29-250 (251)
13 TIGR01508 rib_reduct_arch 2,5- 99.1 3.8E-09 8.2E-14 92.3 17.6 136 69-216 2-180 (210)
14 PRK14719 bifunctional RNAse/5- 98.9 4.3E-08 9.2E-13 92.6 16.3 136 66-211 138-316 (360)
15 PRK10786 ribD bifunctional dia 98.8 1.5E-07 3.2E-12 89.0 15.4 135 67-211 146-328 (367)
16 COG1985 RibD Pyrimidine reduct 98.7 2.5E-07 5.5E-12 81.8 14.1 140 67-216 3-185 (218)
17 PLN02807 diaminohydroxyphospho 98.2 3E-05 6.4E-10 73.9 14.5 132 66-211 174-346 (380)
18 PRK00536 speE spermidine synth 62.7 5.4 0.00012 36.3 2.2 43 175-219 72-118 (262)
19 PF08353 DUF1727: Domain of un 43.5 50 0.0011 26.2 4.7 83 72-183 24-108 (113)
20 COG0421 SpeE Spermidine syntha 34.0 50 0.0011 30.4 3.7 43 177-219 78-124 (282)
21 PF13344 Hydrolase_6: Haloacid 30.5 45 0.00097 25.4 2.4 37 156-195 63-99 (101)
22 PF02571 CbiJ: Precorrin-6x re 29.2 3.4E+02 0.0074 24.3 8.2 70 134-208 93-163 (249)
23 PF02476 US2: US2 family; Int 29.1 1.1E+02 0.0024 25.0 4.5 41 176-216 11-53 (126)
24 COG2099 CobK Precorrin-6x redu 28.6 3E+02 0.0066 25.2 7.7 68 133-207 92-159 (257)
25 PF01344 Kelch_1: Kelch motif; 28.1 35 0.00075 21.6 1.2 12 176-187 11-22 (47)
26 PF01564 Spermine_synth: Sperm 25.1 38 0.00081 30.3 1.3 43 175-217 76-122 (246)
27 PRK10444 UMP phosphatase; Prov 23.5 5.2E+02 0.011 22.9 8.6 35 158-196 68-102 (248)
28 TIGR00300 conserved hypothetic 22.7 2.2E+02 0.0049 27.7 6.0 41 157-201 187-234 (407)
29 TIGR03609 S_layer_CsaB polysac 22.4 75 0.0016 28.5 2.7 49 133-189 27-77 (298)
No 1
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.3e-49 Score=332.45 Aligned_cols=181 Identities=53% Similarity=0.886 Sum_probs=161.0
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCC
Q 025485 67 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 146 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~ 146 (252)
|+.+.+++|++.+++||++|+|||++|.||+||+++|+++++|.|.|+||||||||||+|.+.|||++|.||||||+...
T Consensus 1 ~~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~ 80 (190)
T KOG1324|consen 1 MRLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKE 80 (190)
T ss_pred CceeEEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEe
Q 025485 147 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQR 226 (252)
Q Consensus 147 ~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~ 226 (252)
+....++++++++++.|++.|.+.+.+...+.||||||+++|+++|++++||+|++|+|+..++||+|||.+|.+.++.|
T Consensus 81 ~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~ 160 (190)
T KOG1324|consen 81 DFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKW 160 (190)
T ss_pred CcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChHHhchh
Confidence 54455778999999999999999877788899999999999999999999999999999999999999999998888876
Q ss_pred eeccCceeCcccEEEEEEEEc
Q 025485 227 YSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 227 ~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
....+..+++.++++..+.|.
T Consensus 161 ~~~~pv~~~~~~~~~e~~lk~ 181 (190)
T KOG1324|consen 161 DKLFPVSENGLRVQEETFLKP 181 (190)
T ss_pred hhcCcccccccchhhhcCccc
Confidence 554444444444444444443
No 2
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=5.4e-46 Score=313.14 Aligned_cols=159 Identities=48% Similarity=0.825 Sum_probs=142.9
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
+|.+|+|++.||+||++|+|||++|+|++||+++|+ +++||||||||||+| .+|||+|.||||||+....
T Consensus 1 mi~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~-------~~~vIMGrkT~eslp--~~pLp~R~niVlSr~~~~~- 70 (161)
T PF00186_consen 1 MISLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTT-------GNPVIMGRKTFESLP--FRPLPGRINIVLSRNPDYE- 70 (161)
T ss_dssp -EEEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHT-------TCEEEEEHHHHHHST--GSSBTTSEEEEESSSTTSC-
T ss_pred CEEEEEEECCCCcccCCCccccccHHHHHHHHHccC-------CccEEEeeCchhcCC--ccCCCCCeEEEEEcCcccc-
Confidence 589999999999999999999999999999999998 599999999999999 3799999999999998753
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
.+++.+++|+++|++.++. ..++||||||++||+++| ++||++|||+|+..++||+|||+++.+.|+++..
T Consensus 71 --~~~~~~~~s~~~al~~~~~-----~~~~i~ViGG~~iy~~~l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~ 141 (161)
T PF00186_consen 71 --PEGVEVVSSLEEALELAKD-----KDEEIFVIGGAEIYEQFL--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSE 141 (161)
T ss_dssp --TTTSEEESSHHHHHHHHTT-----SESEEEEEE-HHHHHHHH--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEE
T ss_pred --cCCceeeCCHHHHHHHhhc-----cCCcEEEECCHHHHHHHH--HhCCeEEEEEEcCccccceECCCCChHHCEEEEE
Confidence 2588899999999996654 368999999999999999 5899999999999999999999999999998765
Q ss_pred ccC--ceeCcccEEEEEEEE
Q 025485 229 SQP--LVENNIQFSFVTYVR 246 (252)
Q Consensus 229 ~~~--~~e~~~~~~f~~Y~r 246 (252)
+.. .++++++|+|++|+|
T Consensus 142 ~~~~~~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 142 EEHPKDEENGIKYTFVTYER 161 (161)
T ss_dssp EEEEHBEETTSEEEEEEEEE
T ss_pred EecccCCCCCCCEEEEEEEC
Confidence 543 368999999999998
No 3
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=3.9e-44 Score=301.28 Aligned_cols=156 Identities=33% Similarity=0.608 Sum_probs=138.5
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCC
Q 025485 70 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 149 (252)
Q Consensus 70 i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~ 149 (252)
|.+|+|++.||+||++|+|||++|+|++||+++|+ ++++||||||||+++ +|||+|+|||+||+...
T Consensus 2 i~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~-------~~~vIMGRkTyes~~---~plp~r~~iVlSr~~~~--- 68 (159)
T PRK10769 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIVISSQPGT--- 68 (159)
T ss_pred EEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhC-------CCeEEEeHHHHHhhh---hhcCCCcEEEECCCCCC---
Confidence 78999999999999999999999999999999998 599999999999997 69999999999998532
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeeec
Q 025485 150 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 229 (252)
Q Consensus 150 ~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~~ 229 (252)
.+++.++++++++++.+++ .++|||+||+++|+++|+ .||+++||+||..++||+|||.++.+.|+++.++
T Consensus 69 -~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~~~l~--~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~~ 139 (159)
T PRK10769 69 -DDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYEQFLP--KAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFSE 139 (159)
T ss_pred -CCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHHHHHH--HCCEEEEEEECccccCCEECCCCChHHCEEEEEE
Confidence 3678888899999986653 368999999999999994 5999999999999999999999998889987544
Q ss_pred cC--ceeCcccEEEEEEEEc
Q 025485 230 QP--LVENNIQFSFVTYVRV 247 (252)
Q Consensus 230 ~~--~~e~~~~~~f~~Y~r~ 247 (252)
.. +++|++.|+|.+|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 140 FHDADEQNSHSYCFEILERR 159 (159)
T ss_pred eccccCCCCccEEEEEEEeC
Confidence 32 3678889999999984
No 4
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=7e-41 Score=283.44 Aligned_cols=165 Identities=38% Similarity=0.599 Sum_probs=145.7
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
+|++++|+|+||+||.+|+|||++|+|++||+++|.+ +.|||||||||+++...+||++|.|||+||+....
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~~-------~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~~- 72 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTLG-------KPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDLK- 72 (167)
T ss_pred CEEEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhCC-------CCEEEccchhhhccccCCCCCCCeEEEEecCcccc-
Confidence 4899999999999999999999999999999999984 77999999999999665799999999999995443
Q ss_pred CCCCC-eEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CCccccCCCCccCceEe
Q 025485 149 ASLEN-VEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTFIPAIDLSLFQQR 226 (252)
Q Consensus 149 ~~~~~-v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eGD~fFP~~d~~~f~~~ 226 (252)
.++ +.+.+|+++|+..+++. .+++|||+||+++|+++++++++|+++||++|..+ +||+|||..+...|+++
T Consensus 73 --~e~~~~v~~s~~~al~~~~~~----~~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~ 146 (167)
T COG0262 73 --TEGGVEVVDSIEEALLLLLKE----EGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELV 146 (167)
T ss_pred --cCCCEEEeCCHHHHHHHHhhc----CCCeEEEEcCHHHHHHHhccccccEEEEEEeeeeccCCCccCCCCCccceEEe
Confidence 356 89999999999999875 47999999999999999999999999999999999 99999999777889887
Q ss_pred eeccCceeCcccEEEEEEEEc
Q 025485 227 YSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 227 ~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
.+....+.+.+.|+|..|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ 167 (167)
T COG0262 147 SSEDADEKGGYFYTFESYERR 167 (167)
T ss_pred eeeecccCCceeEEEEEeecC
Confidence 654334567778888888764
No 5
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=4.1e-40 Score=319.74 Aligned_cols=178 Identities=43% Similarity=0.704 Sum_probs=156.1
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCC------CCCCCCCEEEEccchhccccCCCCCCCCCcEEEE
Q 025485 67 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMST------SDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVL 140 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~------~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVl 140 (252)
++++.+|+|++.||+||++|+|||++|+||+||+++|+++ ++|+++++|||||||||++|...+|||+|+|||+
T Consensus 7 ~~~i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~rPLp~R~nIVL 86 (514)
T PTZ00164 7 LKDFSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKFRPLKNRINVVL 86 (514)
T ss_pred CCCEEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhccccCCCeEEEE
Confidence 6899999999999999999999999999999999999843 5788899999999999999865579999999999
Q ss_pred CCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCc
Q 025485 141 THSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDL 220 (252)
Q Consensus 141 Sr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~ 220 (252)
||++.... ..+++.+++++++|++.+++.+ +.++|||+||+++|+++|++++||+++||+|+...+||+|||.++.
T Consensus 87 Sr~~~~~~-~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI~~~geGD~~FP~~~~ 162 (514)
T PTZ00164 87 SRTLTEEE-ADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYREALSANLLDKIYLTRVNSEYECDVFFPKIPE 162 (514)
T ss_pred cCCCCccc-CCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHHHHhcCCCCCEEEEEEEEeccccCccCCCCCc
Confidence 99865421 1356888999999999998741 4589999999999999999999999999999877799999999988
Q ss_pred cCceEeeeccCceeCcccEEEEEEEEcC
Q 025485 221 SLFQQRYSSQPLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 221 ~~f~~~~~~~~~~e~~~~~~f~~Y~r~~ 248 (252)
+.|+++..+...+++++.|+|++|+|++
T Consensus 163 ~~~~l~~~s~~~~~~~v~y~f~~y~r~~ 190 (514)
T PTZ00164 163 SFFIVAIVSQTFSTNGTSYDFVIYEKKN 190 (514)
T ss_pred hhcEEEEEEEeccCCCceEEEEEEeccC
Confidence 7898876444556688899999999975
No 6
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=100.00 E-value=1.1e-34 Score=242.83 Aligned_cols=158 Identities=44% Similarity=0.728 Sum_probs=134.9
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCC
Q 025485 70 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 149 (252)
Q Consensus 70 i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~ 149 (252)
|++++|+|+||+||.+|++||++++|+++|++.+. .+++||||||||+++. +|||+|.++|+||++...
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~-------~~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~~-- 69 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTT-------GNPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDYQ-- 69 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHC-------CCeEEEChhhHhhCCC--cCCCCCCEEEEccCCCcC--
Confidence 57999999999999877899999999999998886 5999999999999984 589999999999987543
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeeec
Q 025485 150 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 229 (252)
Q Consensus 150 ~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~~ 229 (252)
.++++.++.+++++++.++ . ++++|||+||+++|++++++ +||++++++|..++||++||..+...|++..+.
T Consensus 70 ~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~~~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~ 142 (158)
T cd00209 70 DAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYKQALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE 142 (158)
T ss_pred CCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHHHHHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEE
Confidence 2467887789999999998 4 57899999999999999977 999999999999999999998756678876512
Q ss_pred cCceeCcccEEEEEEE
Q 025485 230 QPLVENNIQFSFVTYV 245 (252)
Q Consensus 230 ~~~~e~~~~~~f~~Y~ 245 (252)
....+++++|.|.+|.
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (158)
T cd00209 143 EVFEEDGYSYTFETYE 158 (158)
T ss_pred eecccCCccEEEEEEC
Confidence 2223455789998884
No 7
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=100.00 E-value=8.5e-35 Score=282.45 Aligned_cols=155 Identities=20% Similarity=0.430 Sum_probs=131.2
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
+|.+|||++.||+||++|+||||+|+|++||+++|+ +++|||||||||+++ +|+|+|+|||+||+.....
T Consensus 1 mi~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~-------~~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~~ 70 (505)
T PRK00478 1 MIKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTT-------NHTIVMGYNTFQAMN---KILANQANIVISKKHQREL 70 (505)
T ss_pred CEEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhC-------CCeEEEehHHHHhhh---hcCCCCeEEEECCCCcccc
Confidence 388999999999999999999999999999999998 599999999999998 5899999999999864321
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
...+++.+++|++++++.. ++++|||+||+++|++++ +.||+++||+||..++||++| .++...|+++..
T Consensus 71 ~~~~~v~v~~sl~~~L~~~-------~~~dI~IIGG~~Ly~~~l--~~vDel~lT~Ip~~~g~d~~f-~~~~~~~~Lv~~ 140 (505)
T PRK00478 71 KNNNELFVFNDLKKLLIDF-------SNVDLFIIGGKKTIEQFI--KYADQLIISKLNADYKCDLFV-NLNYDDFSLVQT 140 (505)
T ss_pred CCCCCeEEECCHHHHHHhC-------CCCCEEEEChHHHHHHHH--HhCCEEEEEEeccccCCCCCC-CCChhhheeeee
Confidence 1125788899999997643 236899999999999999 469999999999999999998 556677887543
Q ss_pred ccCceeCcccEEEEEEEEcC
Q 025485 229 SQPLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 229 ~~~~~e~~~~~~f~~Y~r~~ 248 (252)
+....|.+.+|+|+.
T Consensus 141 -----~~~~~~v~~~Y~rk~ 155 (505)
T PRK00478 141 -----KEYDQFVVEYWEKKP 155 (505)
T ss_pred -----EEcCcEEEEEEEecC
Confidence 222259999999984
No 8
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.75 E-value=1.5e-17 Score=142.99 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=110.5
Q ss_pred CcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccC---C-CCCC---------
Q 025485 68 RPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP---L-YRPL--------- 132 (252)
Q Consensus 68 ~~i~livA~s~dG~IG-~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~---~-~~pl--------- 132 (252)
|++++.+|+|+||+|+ .+|+..|.. ++|.+++.+.... .+++||||+|++.... . ..+.
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRA 74 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCH
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhc
Confidence 5799999999999995 789999965 4556666666553 6999999999986522 0 0111
Q ss_pred CCCcEEEECCCCCCCCC----C-CCCe-EEeCC---------------HHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHH
Q 025485 133 PGRLNVVLTHSGSFNIA----S-LENV-EICRS---------------IHLALELLAEPPYCSSIEKVFVIGGGQILREA 191 (252)
Q Consensus 133 ~~r~~iVlSr~~~~~~~----~-~~~v-~v~~s---------------i~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~ 191 (252)
++.+.+|+|++...+.. . ...+ .++.+ ++++++.|++. +.++|+|.||+++.++|
T Consensus 75 ~~p~~vV~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~~~ 150 (200)
T PF01872_consen 75 KQPPKVVVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNGSF 150 (200)
T ss_dssp SSSEEEEEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHHHH
T ss_pred cCCeEEEEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHHHH
Confidence 56789999999763211 0 1122 23333 99999999987 78999999999999999
Q ss_pred hcCCCcCEEEEEEECCcc-C-CccccCCCCcc--CceEee
Q 025485 192 LNAPECDAIHITKIETSI-E-CDTFIPAIDLS--LFQQRY 227 (252)
Q Consensus 192 L~~~liDel~LT~I~~~~-e-GD~fFP~~d~~--~f~~~~ 227 (252)
++++++||++|++.|..+ + |.++|+..... .|++..
T Consensus 151 l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~ 190 (200)
T PF01872_consen 151 LRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVS 190 (200)
T ss_dssp HHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEE
T ss_pred HhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEE
Confidence 999999999999999888 4 68999987653 466543
No 9
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=99.63 E-value=1.6e-14 Score=126.24 Aligned_cols=140 Identities=21% Similarity=0.210 Sum_probs=97.6
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccC-----C----C--CC--
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP-----L----Y--RP-- 131 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~-----~----~--~p-- 131 (252)
.+.+++.+|+|+||.|+ .+|+- |.- +++..++.++-.. .+++|||++|++.-.. + . .|
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~ 74 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIR 74 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEE
Confidence 46788999999999996 67777 964 5666666665443 6999999999986200 0 0 00
Q ss_pred ---------------CC-CCcEEEECCCCCCCCC----CCCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 025485 132 ---------------LP-GRLNVVLTHSGSFNIA----SLENVEIC------RSIHLALELLAEPPYCSSIEKVFVIGGG 185 (252)
Q Consensus 132 ---------------l~-~r~~iVlSr~~~~~~~----~~~~v~v~------~si~eal~~l~~~~~~~~~~~I~ViGG~ 185 (252)
+. ..+.+|+|+....... ...++.+. .++.++++.|++. +.++|||.||+
T Consensus 75 vVld~~~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 150 (217)
T PRK05625 75 VVVDSSARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGG 150 (217)
T ss_pred EEECCCCCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCH
Confidence 11 1344555443210000 01123222 3788999999876 78999999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECCccC---CccccCC
Q 025485 186 QILREALNAPECDAIHITKIETSIE---CDTFIPA 217 (252)
Q Consensus 186 ~Iy~~~L~~~liDel~LT~I~~~~e---GD~fFP~ 217 (252)
++..+|++++++||+++++.|..+. |.++|+.
T Consensus 151 ~l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~ 185 (217)
T PRK05625 151 TLIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADG 185 (217)
T ss_pred HHHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCC
Confidence 9999999999999999999999874 6788875
No 10
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=99.59 E-value=3.9e-14 Score=123.24 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=97.3
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHHhCCCCCCCCCEEEEccchhcc----ccCC-------CCC--
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWES----ISPL-------YRP-- 131 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyes----lp~~-------~~p-- 131 (252)
.+.+++.+|+|+||.|+ .+|+..|. -+++..++.+.... .+++||||+||+. +..+ ..|
T Consensus 2 rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~l~~r~~~~~~~~~P~~ 75 (216)
T TIGR00227 2 RPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQ------SDAILVGSGTVLADDPRLTVRWVELDELRNPVR 75 (216)
T ss_pred CCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhH------cCEEEECcCeEeccCCcceeeccCcccCCCCeE
Confidence 45789999999999996 67888896 45555565555543 6999999999996 2110 001
Q ss_pred ---------------CC-CCcEEEECCCCCCCCC----CCCCeEE----eC--CHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 025485 132 ---------------LP-GRLNVVLTHSGSFNIA----SLENVEI----CR--SIHLALELLAEPPYCSSIEKVFVIGGG 185 (252)
Q Consensus 132 ---------------l~-~r~~iVlSr~~~~~~~----~~~~v~v----~~--si~eal~~l~~~~~~~~~~~I~ViGG~ 185 (252)
+. ..+.+|+|++...... ...++.+ .+ ++.++++.|++. +.++|+|.||+
T Consensus 76 vv~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG~ 151 (216)
T TIGR00227 76 VVLDSQLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGGG 151 (216)
T ss_pred EEECCCCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeCH
Confidence 11 1345555543211000 0112332 23 789999999876 78999999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECCccC---CccccC
Q 025485 186 QILREALNAPECDAIHITKIETSIE---CDTFIP 216 (252)
Q Consensus 186 ~Iy~~~L~~~liDel~LT~I~~~~e---GD~fFP 216 (252)
++..+|++++++||+++++.|..+. |.++|.
T Consensus 152 ~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~ 185 (216)
T TIGR00227 152 TLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVD 185 (216)
T ss_pred HHHHHHHHCCCCCEEEEEECchhhCCCCCcCccC
Confidence 9999999999999999999998875 555553
No 11
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.45 E-value=1.7e-12 Score=121.16 Aligned_cols=135 Identities=20% Similarity=0.170 Sum_probs=93.3
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCC---CCCC--C------
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL---YRPL--P------ 133 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~---~~pl--~------ 133 (252)
.+-+++.+|+|+||+|+ .+|+..|.- +++..++.++... .+++||||+||+..... .+|- +
T Consensus 140 rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV 213 (344)
T TIGR00326 140 LPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTARLDEATEQPLRVV 213 (344)
T ss_pred CCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccccCCCCCCCCeEEE
Confidence 45689999999999996 688999965 4455555555343 69999999999952100 0110 0
Q ss_pred ----------------CCcEEEECCCCCCC-CCCCCCeEEe----CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHh
Q 025485 134 ----------------GRLNVVLTHSGSFN-IASLENVEIC----RSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 192 (252)
Q Consensus 134 ----------------~r~~iVlSr~~~~~-~~~~~~v~v~----~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L 192 (252)
..+.+|+|++.... .....++.+. .++.++++.|++. +.++|+|.||+.+..+|+
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L~~~ll 289 (344)
T TIGR00326 214 LDTQLRIPEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNLLGSFL 289 (344)
T ss_pred EcCCCCCCCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHHHHHHH
Confidence 22345555431100 0001122222 3789999999875 789999999999999999
Q ss_pred cCCCcCEEEEEEECCccCC
Q 025485 193 NAPECDAIHITKIETSIEC 211 (252)
Q Consensus 193 ~~~liDel~LT~I~~~~eG 211 (252)
+++++||+++++.|..+.|
T Consensus 290 ~~gLVDEl~l~i~P~ilG~ 308 (344)
T TIGR00326 290 DEGLVDELIIYIAPKLLGG 308 (344)
T ss_pred HCCCCeEEEEEEccEEecC
Confidence 9999999999999987753
No 12
>PRK14059 hypothetical protein; Provisional
Probab=99.28 E-value=3.8e-10 Score=101.48 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=112.5
Q ss_pred CCCcEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCC--------------C
Q 025485 66 ARRPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLY--------------R 130 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG~~G~LPW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~--------------~ 130 (252)
..+-+++.+|+|+||.|+.+|+--|. -+++.++.-++-.. .++|+.|.+|-..=.... .
T Consensus 29 ~rP~V~lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa~------~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g 102 (251)
T PRK14059 29 DRPWLRANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRAL------ADVVVVGAGTVRAENYGGVRLSAAARQQRQARG 102 (251)
T ss_pred CCCeEEEEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHHH------CCEEEEchhhhhhcCccccccCHHHHHHHHhcC
Confidence 36789999999999999987877786 46666665555443 699999999985411000 0
Q ss_pred CCCCCcEEEECCCCCCCCC------C-----------------------CCCeEE-e-----CCHHHHHHHhcCCCCCCC
Q 025485 131 PLPGRLNVVLTHSGSFNIA------S-----------------------LENVEI-C-----RSIHLALELLAEPPYCSS 175 (252)
Q Consensus 131 pl~~r~~iVlSr~~~~~~~------~-----------------------~~~v~v-~-----~si~eal~~l~~~~~~~~ 175 (252)
.-++.+.||++++...+.. . ..++.+ . -++.++++.|++. +
T Consensus 103 ~~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g 178 (251)
T PRK14059 103 QAEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----G 178 (251)
T ss_pred CCCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----C
Confidence 0022345666665432110 0 001221 1 2677888888876 7
Q ss_pred CCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CC-ccccCCC--CccCceEeeeccCceeCcccEEEEEEEEc
Q 025485 176 IEKVFVIGGGQILREALNAPECDAIHITKIETSI-EC-DTFIPAI--DLSLFQQRYSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 176 ~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eG-D~fFP~~--d~~~f~~~~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
.++|||.||+.+..+|++++++||+++++.|..+ +| -++|+.. ....|++.... ..++ +..+..|++.
T Consensus 179 ~~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~~~~l~L~~~~--~~~~--g~v~l~Y~~~ 250 (251)
T PRK14059 179 LRRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPGQAPTRMRLAHVL--TDDD--GYLFLRYVRA 250 (251)
T ss_pred CCEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCCCCCcCeEEEEEE--EcCC--CEEEEEEEeC
Confidence 8999999999999999999999999999999988 34 4677652 13456553322 1123 6788999875
No 13
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=99.14 E-value=3.8e-09 Score=92.34 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=92.9
Q ss_pred cEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHHhCCCCCCCCCEEEEccchhcc----ccCCCCC--CCCCcEEEE
Q 025485 69 PYQVVVAATHDMGIG-KDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWES----ISPLYRP--LPGRLNVVL 140 (252)
Q Consensus 69 ~i~livA~s~dG~IG-~~G~LPW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyes----lp~~~~p--l~~r~~iVl 140 (252)
-+++-+|+|+||.|+ .+|+ -|. -+++.+++.++-.. .++|+.|.+|-.. +... .+ -.+...+|+
T Consensus 2 ~V~lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r-~~~~~~~P~rvVl 73 (210)
T TIGR01508 2 YVIVNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVK-KIKSDRNPVRVVV 73 (210)
T ss_pred EEEEEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCccccc-CcccCCCCEEEEE
Confidence 478899999999997 4667 562 35666665555543 6999999999863 2110 01 122345777
Q ss_pred CCCCCCCCC------C--------------------CCCeE--EeC----CHHHHHHHhcCCCCCCCCCcEEEEeCHHHH
Q 025485 141 THSGSFNIA------S--------------------LENVE--ICR----SIHLALELLAEPPYCSSIEKVFVIGGGQIL 188 (252)
Q Consensus 141 Sr~~~~~~~------~--------------------~~~v~--v~~----si~eal~~l~~~~~~~~~~~I~ViGG~~Iy 188 (252)
+++...+.. . ..++. .++ ++.++++.|++. +.++|+|-||+++.
T Consensus 74 d~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~ 149 (210)
T TIGR01508 74 DSKLRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLI 149 (210)
T ss_pred CCCCCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHH
Confidence 766533110 0 01122 111 677888888875 88999999999999
Q ss_pred HHHhcCCCcCEEEEEEECCccC---CccccC
Q 025485 189 REALNAPECDAIHITKIETSIE---CDTFIP 216 (252)
Q Consensus 189 ~~~L~~~liDel~LT~I~~~~e---GD~fFP 216 (252)
.+|++++++||+++++.|..+. +..+|.
T Consensus 150 ~~fl~~~LvDel~l~i~P~ilG~~~~~~~~~ 180 (210)
T TIGR01508 150 WSLFKENLVDEISVYIAPKIFGGRDAPTYVD 180 (210)
T ss_pred HHHHHCCCCcEEEEEEcCEEEcCCCCcCccC
Confidence 9999999999999999998885 344554
No 14
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.93 E-value=4.3e-08 Score=92.58 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=90.4
Q ss_pred CCCcEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccc-cC-CCC-----CCCCCcE
Q 025485 66 ARRPYQVVVAATHDMGIGK-DGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SP-LYR-----PLPGRLN 137 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG~-~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~-~~~-----pl~~r~~ 137 (252)
.++-+++-+|+|+||.|+. +|.-...-+++.++.-++-.. .++|++|.+|-..= |. .-+ +-++...
T Consensus 138 ~rP~V~lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~R 211 (360)
T PRK14719 138 MLPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKINASPKDNPLR 211 (360)
T ss_pred CCCeEEEEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccccccCCCCCEE
Confidence 4677999999999999985 555333345666665555443 69999999999421 00 001 1122334
Q ss_pred EEECCCCCCCCC-----------------------------CCCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEE
Q 025485 138 VVLTHSGSFNIA-----------------------------SLENVEIC------RSIHLALELLAEPPYCSSIEKVFVI 182 (252)
Q Consensus 138 iVlSr~~~~~~~-----------------------------~~~~v~v~------~si~eal~~l~~~~~~~~~~~I~Vi 182 (252)
||++++...+.. ...++.+. -++.++++.|.+. +...|||-
T Consensus 212 VVlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~----gi~svlVE 287 (360)
T PRK14719 212 IVVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM----GINKILLE 287 (360)
T ss_pred EEEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC----CCCEEEEE
Confidence 555554322110 00012211 1577888888765 78999999
Q ss_pred eCHHHHHHHhcCCCcCEEEEEEECCccCC
Q 025485 183 GGGQILREALNAPECDAIHITKIETSIEC 211 (252)
Q Consensus 183 GG~~Iy~~~L~~~liDel~LT~I~~~~eG 211 (252)
||+++..+|++++++||+++++.|..+.|
T Consensus 288 GG~~l~~sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 288 GGGTLNWGMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred eCHHHHHHHHHCCCceEEEEEEccEEECC
Confidence 99999999999999999999999988854
No 15
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.80 E-value=1.5e-07 Score=89.04 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=95.8
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCC--CC-C-C--------
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL--YR-P-L-------- 132 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~--~~-p-l-------- 132 (252)
.+-+++-+|+|+||.|+ .+|+--|. -++|.+++.++-.. .++|+.|..|-..=... -+ + +
T Consensus 146 rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~------~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~ 219 (367)
T PRK10786 146 FPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ------SHAILTSSATVLADDPALTVRWSELDAQTQALY 219 (367)
T ss_pred cceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHhH------CCEEEECcChHhhcCCCcccccccccccccccc
Confidence 56689999999999997 57787785 56777776665543 69999999998632100 00 0 0
Q ss_pred -----CCCcEEEECCCCCCCCC------CC---------------CCe---EEe-----CCHHHHHHHhcCCCCCCCCCc
Q 025485 133 -----PGRLNVVLTHSGSFNIA------SL---------------ENV---EIC-----RSIHLALELLAEPPYCSSIEK 178 (252)
Q Consensus 133 -----~~r~~iVlSr~~~~~~~------~~---------------~~v---~v~-----~si~eal~~l~~~~~~~~~~~ 178 (252)
++...||++++...+.. .. .++ .+. -++.++++.|.+. +.++
T Consensus 220 ~~~~~~~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~----Gi~~ 295 (367)
T PRK10786 220 PQENLRQPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ----QINS 295 (367)
T ss_pred ccccCCCCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----CCCE
Confidence 12346888887543210 00 011 011 1577888888765 8899
Q ss_pred EEEEeCHHHHHHHhcCCCcCEEEEEEECCccCC
Q 025485 179 VFVIGGGQILREALNAPECDAIHITKIETSIEC 211 (252)
Q Consensus 179 I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eG 211 (252)
+||-||+.+..+|++++++||+++++.|..+.+
T Consensus 296 l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G~ 328 (367)
T PRK10786 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGS 328 (367)
T ss_pred EEEeeCHHHHHHHHHCCCccEEEEEEcceeccC
Confidence 999999999999999999999999999988743
No 16
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=98.75 E-value=2.5e-07 Score=81.76 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=95.9
Q ss_pred CCcEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHHhCCCCCCCCCEEEEccchhccc-cC---CCCC---CCCCcE
Q 025485 67 RRPYQVVVAATHDMGIGK-DGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SP---LYRP---LPGRLN 137 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~-~G~LPW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~---~~~p---l~~r~~ 137 (252)
.+.+++-+|+|+||.|+. +|+--|. -+++.+..-++-.. .++++.|..|-..= |. +... ..+...
T Consensus 3 rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~r 76 (218)
T COG1985 3 RPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVR 76 (218)
T ss_pred CCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEE
Confidence 457899999999999985 6666696 46666554444443 69999999998641 10 0001 134456
Q ss_pred EEECCCCCCCCC-----CC---C------------------Ce--EEeC----CHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 025485 138 VVLTHSGSFNIA-----SL---E------------------NV--EICR----SIHLALELLAEPPYCSSIEKVFVIGGG 185 (252)
Q Consensus 138 iVlSr~~~~~~~-----~~---~------------------~v--~v~~----si~eal~~l~~~~~~~~~~~I~ViGG~ 185 (252)
||++++...+.. .. + ++ .+++ +++.+++.|.+. +...++|=||+
T Consensus 77 VIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~ 152 (218)
T COG1985 77 VILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGA 152 (218)
T ss_pred EEECCCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCH
Confidence 666665432210 00 1 11 1122 578888888876 68999999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECCccCC--ccccC
Q 025485 186 QILREALNAPECDAIHITKIETSIEC--DTFIP 216 (252)
Q Consensus 186 ~Iy~~~L~~~liDel~LT~I~~~~eG--D~fFP 216 (252)
.+..+|+++|++||+.+++.|..+.| -+++.
T Consensus 153 ~L~~s~l~~glVDel~l~iaP~i~G~~~~~~~~ 185 (218)
T COG1985 153 TLNGSFLEAGLVDELLLYIAPKILGGSARTLVG 185 (218)
T ss_pred HHHHHHHHcCCCcEEEEEEechhhcCCCCcccc
Confidence 99999999999999999999988854 45555
No 17
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=98.24 E-value=3e-05 Score=73.92 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=86.6
Q ss_pred CCCcEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccc-cC-CCC-C-CCCCcEEEE
Q 025485 66 ARRPYQVVVAATHDMGIGK-DGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SP-LYR-P-LPGRLNVVL 140 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG~-~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~-~~~-p-l~~r~~iVl 140 (252)
..+-+++-+|+|+||.|+. .|.--|.-..+....+.. .++|+.| +|-..= |. .-+ | .++...||+
T Consensus 174 ~rP~V~lK~A~SlDGkia~~~g~s~~~s~~~vh~lRa~---------~DAIlVG-~Tv~~DnP~Lt~R~~~~~~PiRVVl 243 (380)
T PLN02807 174 GKPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQLLQE---------YDAVILS-SALADADPLPLSQEAGAKQPLRIII 243 (380)
T ss_pred ccccEEEEEEEcCCCCeeCCCCCChhhhhHHHHHHHhh---------CCEEEEc-CEeeccCCCCccCCCCCCCCEEEEE
Confidence 3567899999999999974 454334333333332222 5999999 986321 10 001 1 123445777
Q ss_pred CCCCCCCCC-------CC-------------------CCeEEe----CCHHHHHHHhcCCCCCCCCCcEEEEe------C
Q 025485 141 THSGSFNIA-------SL-------------------ENVEIC----RSIHLALELLAEPPYCSSIEKVFVIG------G 184 (252)
Q Consensus 141 Sr~~~~~~~-------~~-------------------~~v~v~----~si~eal~~l~~~~~~~~~~~I~ViG------G 184 (252)
+++...+.. .. .++.+. -++.++++.|.+. +...++|=| |
T Consensus 244 d~~l~~p~~~~i~~~~~~~~~iv~t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~----Gi~svLVEGG~~~~~G 319 (380)
T PLN02807 244 ARSESSPLQIPSLREESAAKVLVLADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQR----GLCSVLLDLRGNVGGL 319 (380)
T ss_pred cCCCCCCCcceecccCCCCCEEEEECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHC----CCCEEEEecCCCCCCH
Confidence 776532210 00 012111 1678888888776 899999999 8
Q ss_pred HHHHHHHhcCCCcCEEEEEEECCccCC
Q 025485 185 GQILREALNAPECDAIHITKIETSIEC 211 (252)
Q Consensus 185 ~~Iy~~~L~~~liDel~LT~I~~~~eG 211 (252)
+++..+|++++++||+++.+.|..+.+
T Consensus 320 ~~L~~sfl~~~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 320 ESLLKDALEDKLLQKVVVEVLPFWSGS 346 (380)
T ss_pred HHHHHHHHHCCCccEEEEEEcCceecC
Confidence 999999999999999999999998854
No 18
>PRK00536 speE spermidine synthase; Provisional
Probab=62.71 E-value=5.4 Score=36.34 Aligned_cols=43 Identities=12% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCCcEEEEeC--HHHHHHHhcCCCcCEEEEEEECCcc--CCccccCCCC
Q 025485 175 SIEKVFVIGG--GQILREALNAPECDAIHITKIETSI--ECDTFIPAID 219 (252)
Q Consensus 175 ~~~~I~ViGG--~~Iy~~~L~~~liDel~LT~I~~~~--eGD~fFP~~d 219 (252)
..++|.|+|| |.+.++.|+++ +++.+-.|+... -+..+||.+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHH
Confidence 5699999999 57899999997 466665555433 4677888744
No 19
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=43.54 E-value=50 Score=26.20 Aligned_cols=83 Identities=17% Similarity=0.353 Sum_probs=50.1
Q ss_pred EEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCCCC
Q 025485 72 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASL 151 (252)
Q Consensus 72 livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~~~ 151 (252)
+++++. |+ -+++-+.-|.-.-|++.+.+.-. ..+++.|.+.+|.-- |.++ . .. +.
T Consensus 24 ~~~~lN-d~-~aDG~DvSWiWDvdFE~L~~~~i-------~~viv~G~Ra~Dmal--------RLky--A---Gv---~~ 78 (113)
T PF08353_consen 24 VLIALN-DN-YADGRDVSWIWDVDFEKLADPNI-------KQVIVSGTRAEDMAL--------RLKY--A---GV---DE 78 (113)
T ss_pred EEEEec-CC-CCCCccceEEeecCHHHHhcCCC-------CEEEEEeeeHHHHHh--------Heee--c---Cc---ch
Confidence 444543 22 24444566776667776644322 478889999888532 3222 0 01 12
Q ss_pred CCeEEeCCHHHHHHH--hcCCCCCCCCCcEEEEe
Q 025485 152 ENVEICRSIHLALEL--LAEPPYCSSIEKVFVIG 183 (252)
Q Consensus 152 ~~v~v~~si~eal~~--l~~~~~~~~~~~I~ViG 183 (252)
+.+.+..++++|++. +... +.+.++|+.
T Consensus 79 ~~i~v~~d~~~a~~~~~~~~~----~~~~~yil~ 108 (113)
T PF08353_consen 79 EKIIVEEDLEEALDAFLIKSD----PTDKVYILA 108 (113)
T ss_pred HHeEecCCHHHHHHHHHHhcC----CCCcEEEEE
Confidence 456778899999998 5543 567888874
No 20
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=34.03 E-value=50 Score=30.41 Aligned_cols=43 Identities=28% Similarity=0.617 Sum_probs=34.1
Q ss_pred CcEEEEeC--HHHHHHHhcCCCcCEEEEEEECCcc--CCccccCCCC
Q 025485 177 EKVFVIGG--GQILREALNAPECDAIHITKIETSI--ECDTFIPAID 219 (252)
Q Consensus 177 ~~I~ViGG--~~Iy~~~L~~~liDel~LT~I~~~~--eGD~fFP~~d 219 (252)
++|.|+|| |.+.+++++++-+.++.+-.|+..+ =+--+||...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~ 124 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc
Confidence 69999998 6899999999888888887777654 3666777654
No 21
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.45 E-value=45 Score=25.45 Aligned_cols=37 Identities=32% Similarity=0.298 Sum_probs=26.7
Q ss_pred EeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCC
Q 025485 156 ICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAP 195 (252)
Q Consensus 156 v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~ 195 (252)
+..+-..+.+.+++. ...+++|++|...+-+.+-++|
T Consensus 63 i~ts~~~~~~~l~~~---~~~~~v~vlG~~~l~~~l~~~G 99 (101)
T PF13344_consen 63 IITSGMAAAEYLKEH---KGGKKVYVLGSDGLREELREAG 99 (101)
T ss_dssp EEEHHHHHHHHHHHH---TTSSEEEEES-HHHHHHHHHTT
T ss_pred EEChHHHHHHHHHhc---CCCCEEEEEcCHHHHHHHHHcC
Confidence 344566666777763 2689999999999988887766
No 22
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.21 E-value=3.4e+02 Score=24.32 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=48.6
Q ss_pred CCcEEEECCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhc-CCCcCEEEEEEECCc
Q 025485 134 GRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALN-APECDAIHITKIETS 208 (252)
Q Consensus 134 ~r~~iVlSr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~-~~liDel~LT~I~~~ 208 (252)
+-|.+-+-|..... .+.+++..+.|++||.+.+++. +.++|++.=|..-...+.+ ...-.++++-++|..
T Consensus 93 ~ipylR~eRp~~~~-~~~~~~~~v~~~~eA~~~l~~~----~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~ 163 (249)
T PF02571_consen 93 GIPYLRFERPSWQP-EPDDNWHYVDSYEEAAELLKEL----GGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTP 163 (249)
T ss_pred CcceEEEEcCCccc-CCCCeEEEeCCHHHHHHHHhhc----CCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCc
Confidence 45566666654221 1134677889999999999765 5699999999999899964 233457777666653
No 23
>PF02476 US2: US2 family; InterPro: IPR003485 This is a family of unique short (US) region proteins from Herpesviridae strains. The US2 family has no known function.
Probab=29.09 E-value=1.1e+02 Score=25.04 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCcEEEEeCHHHHHHHhc-CCCcCEEEEEEECCccCCccc-cC
Q 025485 176 IEKVFVIGGGQILREALN-APECDAIHITKIETSIECDTF-IP 216 (252)
Q Consensus 176 ~~~I~ViGG~~Iy~~~L~-~~liDel~LT~I~~~~eGD~f-FP 216 (252)
--++||+|-++|++.+++ .+.--+++-.+|+....|-.. -|
T Consensus 11 pyhLWVvGAADLC~Pvl~~ip~pkRlv~~~v~~~w~g~sW~~P 53 (126)
T PF02476_consen 11 PYHLWVVGAADLCRPVLEHIPGPKRLVYAKVPGAWAGMSWALP 53 (126)
T ss_pred ceeEEEechHHHHHHHHHhCCCCceEEEEecCCccCCCccCCC
Confidence 457999999999999996 233448888888888877666 55
No 24
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.63 E-value=3e+02 Score=25.18 Aligned_cols=68 Identities=18% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCCcEEEECCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECC
Q 025485 133 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIET 207 (252)
Q Consensus 133 ~~r~~iVlSr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~ 207 (252)
.+-|-+.+-|..... ..++..-+.|++||.+.+++. +++||+.=|.+-...|.+.+-.+++++-++|.
T Consensus 92 ~gipy~r~eRP~~~~--~gd~~~~V~d~~ea~~~~~~~-----~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~ 159 (257)
T COG2099 92 TGIPYLRLERPPWAP--NGDNWIEVADIEEAAEAAKQL-----GRRVFLTTGRQNLAHFVAADAHSHVLARVLPP 159 (257)
T ss_pred hCCcEEEEECCcccc--CCCceEEecCHHHHHHHHhcc-----CCcEEEecCccchHHHhcCcccceEEEEEcCc
Confidence 467778888764322 136777789999999999874 69999988888888898766555777777774
No 25
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=28.06 E-value=35 Score=21.56 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=9.6
Q ss_pred CCcEEEEeCHHH
Q 025485 176 IEKVFVIGGGQI 187 (252)
Q Consensus 176 ~~~I~ViGG~~I 187 (252)
+++|||+||..-
T Consensus 11 ~~~iyv~GG~~~ 22 (47)
T PF01344_consen 11 GNKIYVIGGYDG 22 (47)
T ss_dssp TTEEEEEEEBES
T ss_pred CCEEEEEeeecc
Confidence 578999999554
No 26
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=25.13 E-value=38 Score=30.26 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=29.5
Q ss_pred CCCcEEEEeC--HHHHHHHhcCCCcCEEEEEEECCcc--CCccccCC
Q 025485 175 SIEKVFVIGG--GQILREALNAPECDAIHITKIETSI--ECDTFIPA 217 (252)
Q Consensus 175 ~~~~I~ViGG--~~Iy~~~L~~~liDel~LT~I~~~~--eGD~fFP~ 217 (252)
..++|.|+|| |.+.+++++++-+.++.+-.|+... -+..+||.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPE 122 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchh
Confidence 5699999987 6788999988766676665555543 36778885
No 27
>PRK10444 UMP phosphatase; Provisional
Probab=23.55 E-value=5.2e+02 Score=22.86 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCC
Q 025485 158 RSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPE 196 (252)
Q Consensus 158 ~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~l 196 (252)
.+-..+.+.|++. +.+++|++|...+.+++.++|+
T Consensus 68 ts~~~~~~~L~~~----~~~~v~~~g~~~l~~~l~~~g~ 102 (248)
T PRK10444 68 TSAMATADFLRRQ----EGKKAYVIGEGALIHELYKAGF 102 (248)
T ss_pred cHHHHHHHHHHhC----CCCEEEEEcCHHHHHHHHHCcC
Confidence 3445556667654 3567999999888888876554
No 28
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=22.70 E-value=2.2e+02 Score=27.68 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=29.7
Q ss_pred eCCHHHHHHHhcCCCCCCCCCcEEEE-------eCHHHHHHHhcCCCcCEEE
Q 025485 157 CRSIHLALELLAEPPYCSSIEKVFVI-------GGGQILREALNAPECDAIH 201 (252)
Q Consensus 157 ~~si~eal~~l~~~~~~~~~~~I~Vi-------GG~~Iy~~~L~~~liDel~ 201 (252)
...+.+.+++.+++ +++-+||. |+......+++.|+||-|.
T Consensus 187 ~~~ia~~lr~~r~~----gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~Ll 234 (407)
T TIGR00300 187 IEQIAWEMYEIRDK----GGKIGVVAGPAVIHTGAAQALAHLIREGYVDALL 234 (407)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEecCeEEecCcHHHHHHHHHcCcccEEe
Confidence 34566667777765 66777874 4667888899999999874
No 29
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.35 E-value=75 Score=28.46 Aligned_cols=49 Identities=33% Similarity=0.475 Sum_probs=29.6
Q ss_pred CCCcEEEECCCCCCCCCCCCCeEEe--CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHH
Q 025485 133 PGRLNVVLTHSGSFNIASLENVEIC--RSIHLALELLAEPPYCSSIEKVFVIGGGQILR 189 (252)
Q Consensus 133 ~~r~~iVlSr~~~~~~~~~~~v~v~--~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~ 189 (252)
++....|+|+++.... ..-++..+ .++.+.++.+++ -++.|+|||++++
T Consensus 27 ~~~~~~v~s~~p~~~~-~~~~v~~~~r~~~~~~~~~l~~-------~D~vI~gGG~l~~ 77 (298)
T TIGR03609 27 PGVEPTVLSNDPAETA-KLYGVEAVNRRSLLAVLRALRR-------ADVVIWGGGSLLQ 77 (298)
T ss_pred CCCeEEEecCChHHHH-hhcCceEEccCCHHHHHHHHHH-------CCEEEECCccccc
Confidence 4455677887754321 11234322 467777777765 3678889988876
Done!