Query 025485
Match_columns 252
No_of_seqs 171 out of 1256
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:16:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rg9_A Bifunctional dihydrofol 100.0 5.4E-48 1.8E-52 342.7 15.6 183 65-247 24-239 (240)
2 3tq8_A Dihydrofolate reductase 100.0 1.6E-46 5.3E-51 319.9 20.8 163 69-252 2-166 (178)
3 3nzb_X Dihydrofolate reductase 100.0 1.6E-47 5.6E-52 332.5 15.0 180 66-247 3-205 (206)
4 3s9u_A Dihydrofolate reductase 100.0 2.2E-46 7.4E-51 315.4 19.6 159 69-248 5-165 (165)
5 3ia4_A Dihydrofolate reductase 100.0 1.5E-46 5E-51 315.6 17.8 159 69-248 2-162 (162)
6 3dau_A Dihydrofolate reductase 100.0 5.2E-46 1.8E-50 311.5 17.3 157 69-247 1-159 (159)
7 1kmv_A DHFR, dihydrofolate red 100.0 8.6E-45 2.9E-49 310.0 19.7 177 68-247 2-185 (186)
8 3ix9_A Dihydrofolate reductase 100.0 1.2E-44 4.3E-49 311.0 20.4 163 67-248 22-187 (190)
9 3dfr_A Dihydrofolate reductase 100.0 7.9E-45 2.7E-49 304.8 17.5 159 71-247 2-161 (162)
10 3irm_A Bifunctional dihydrofol 100.0 4.9E-44 1.7E-48 346.0 17.8 184 65-248 18-234 (521)
11 2bl9_A Dihydrofolate reductase 100.0 7.3E-44 2.5E-48 315.7 15.6 174 69-247 26-238 (238)
12 3nrr_A Dihydrofolate reductase 100.0 1.3E-43 4.4E-48 342.6 18.4 178 64-249 9-193 (515)
13 2w3w_A Dihydrofolate reductase 100.0 1.2E-42 4.1E-47 292.5 18.3 162 67-247 3-167 (167)
14 1zdr_A Dihydrofolate reductase 100.0 8.2E-42 2.8E-46 286.0 20.5 158 70-247 2-161 (164)
15 3qg2_A Bifunctional dihydrofol 100.0 4.5E-43 1.5E-47 342.6 13.6 178 67-249 25-231 (608)
16 2w9h_A DHFR, dihydrofolate red 100.0 4.5E-42 1.5E-46 286.4 17.7 156 69-248 2-159 (159)
17 3hj3_A Chain A, crystal struct 100.0 3.6E-42 1.2E-46 332.9 17.2 173 67-246 4-177 (521)
18 1j3k_A Bifunctional dihydrofol 100.0 1.8E-42 6E-47 313.1 13.3 175 69-248 27-230 (280)
19 1vdr_A DHFR, dihydrofolate red 100.0 1.1E-41 3.8E-46 284.3 17.1 159 68-249 1-160 (162)
20 1df7_A DHFR, dihydrofolate red 100.0 1.9E-41 6.6E-46 283.2 17.1 154 70-247 2-159 (159)
21 1aoe_A DHFR, dihydrofolate red 100.0 1.9E-41 6.3E-46 290.8 16.3 173 67-247 3-192 (192)
22 3cse_A Dihydrofolate reductase 100.0 2.3E-41 8E-46 297.8 13.3 179 67-248 3-218 (227)
23 1juv_A DHFR, dihydrofolate red 100.0 3.3E-35 1.1E-39 252.7 10.0 131 70-217 2-162 (193)
24 1cz3_A Dihydrofolate reductase 100.0 4.6E-33 1.6E-37 232.8 17.2 163 68-250 1-167 (168)
25 3jtw_A Dihydrofolate reductase 100.0 1.1E-32 3.9E-37 233.0 15.4 162 67-246 3-177 (178)
26 3ky8_A Putative riboflavin bio 100.0 3.2E-30 1.1E-34 222.0 15.5 167 66-248 18-196 (197)
27 2xw7_A Dihydrofolate reductase 100.0 1E-29 3.5E-34 213.9 11.1 165 67-249 3-176 (178)
28 2gd9_A Hypothetical protein YY 100.0 2.2E-28 7.7E-33 207.3 11.4 165 65-247 6-188 (189)
29 3kgy_A Bifunctional deaminase- 99.9 9.7E-26 3.3E-30 198.8 15.7 172 61-247 14-231 (231)
30 2b3z_A Riboflavin biosynthesis 99.8 1.6E-18 5.3E-23 162.1 15.3 143 66-218 156-341 (373)
31 2azn_A HTP reductase, putative 99.7 4.4E-17 1.5E-21 140.9 17.3 166 67-248 3-219 (219)
32 2hxv_A Diaminohydroxyphosphori 99.6 2.4E-14 8.2E-19 133.2 19.0 165 66-247 158-357 (360)
33 2g6v_A Riboflavin biosynthesis 99.6 1E-14 3.4E-19 137.6 16.2 141 66-217 172-363 (402)
34 2p4g_A Hypothetical protein; p 99.6 1.1E-13 3.6E-18 123.8 19.6 171 66-249 32-263 (270)
35 3o4f_A Spermidine synthase; am 38.0 7 0.00024 34.9 0.1 43 175-217 83-129 (294)
36 3c6k_A Spermine synthase; sper 27.2 32 0.0011 31.7 2.6 44 175-219 205-252 (381)
No 1
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=100.00 E-value=5.4e-48 Score=342.66 Aligned_cols=183 Identities=39% Similarity=0.675 Sum_probs=156.2
Q ss_pred CCCCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhC------CCCCCCCCEEEEccchhccccCCCCCCCCCcEE
Q 025485 65 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKTWESISPLYRPLPGRLNV 138 (252)
Q Consensus 65 ~~~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~------~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~i 138 (252)
..||+|++|+|+++||+||++|+|||++|+||+||+++|++ ..+|++.++||||||||||+|.+++|||+|.||
T Consensus 24 ~~mr~i~lIvA~s~ng~IG~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~rPLp~R~nI 103 (240)
T 3rg9_A 24 PPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNV 103 (240)
T ss_dssp CCCCCEEEEEEEETTCEEESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGGSSCTTSEEE
T ss_pred CCCCeEEEEEEECCCCcEECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhccCCCCCeEE
Confidence 34899999999999999999999999999999999999998 456777799999999999999656899999999
Q ss_pred EECCCCCCCC-----C--------CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCC---CcCEEEE
Q 025485 139 VLTHSGSFNI-----A--------SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAP---ECDAIHI 202 (252)
Q Consensus 139 VlSr~~~~~~-----~--------~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~---liDel~L 202 (252)
||||+..... + ..+++.+++|+++|++.+++.+...+.++||||||++||+++|+++ +||+++|
T Consensus 104 VlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~sl~eal~~l~~~~~~~~~~~I~VIGGa~IY~~~L~~~~~~l~D~l~l 183 (240)
T 3rg9_A 104 VLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHR 183 (240)
T ss_dssp EECSSCCHHHHHTTCSSHHHHHHHGGGEEEESSCHHHHHHHTTSHHHHHHEEEEEECCCHHHHHHHTSTTGGGGEEEEEE
T ss_pred EEccCcccccccccccccccccccCCCCEEEECCHHHHHHHHhccccccCCCeEEEECCHHHHHHHHhcCccccCCEEEE
Confidence 9999975310 0 0256889999999999998630000157999999999999999988 9999999
Q ss_pred EEEC-CccCCcccc--CCCCccC-----ceEeeeccC---ceeCcccEEEEEEEEc
Q 025485 203 TKIE-TSIECDTFI--PAIDLSL-----FQQRYSSQP---LVENNIQFSFVTYVRV 247 (252)
Q Consensus 203 T~I~-~~~eGD~fF--P~~d~~~-----f~~~~~~~~---~~e~~~~~~f~~Y~r~ 247 (252)
|+|+ ..++||+|| |++|.+. |+++..++. .++|++.|+|++|+|+
T Consensus 184 T~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~f~~y~r~ 239 (240)
T 3rg9_A 184 TVVRPASNSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR 239 (240)
T ss_dssp EEEESCCSSCCEECCCCCTTCCCTTSCCEEEEEECCCEECSSTTCCEEEEEEEEEC
T ss_pred EEEcCCCcCcceecCCCCCChhhcccCceEEEEeeccccccCCCCCceEEEEEEeC
Confidence 9999 889999999 9999877 998864432 2458999999999997
No 2
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=100.00 E-value=1.6e-46 Score=319.89 Aligned_cols=163 Identities=33% Similarity=0.582 Sum_probs=145.4
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
++++|+|+|+||+||++|+|||++|+|+++|+++|+ +++|||||||||++| +|||+|+|||+||+....
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~lp~Dl~~Fk~~T~-------g~~vIMGRkTyesi~---~plp~R~niVlSr~~~~~- 70 (178)
T 3tq8_A 2 IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-------GKPIVMGRRTFDSIG---KPLPHRRNIVITQQKNLI- 70 (178)
T ss_dssp EEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTCC-
T ss_pred EEEEEEEECCCCcEECCCCcCCcCHHHHHHHHHhhc-------CCEEEEechHHhhhh---hccCCCeEEEEcCCCCcC-
Confidence 699999999999999999999999999999999998 599999999999998 699999999999997543
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
.+++.+++|+++|++.+++ .++|||+||+++|+++|+ +||+++||+||..++||+|||+++.+.|+++..
T Consensus 71 --~~~v~v~~sl~eal~~l~~------~~~i~viGG~~iy~~~l~--l~Del~lT~i~~~~~Gd~~Fp~~~~~~w~l~~~ 140 (178)
T 3tq8_A 71 --IEGCDIFYSLDDALSALTK------EPEVIIIGGARIFKEALP--KADKMILTIINHSFEGDVYFPEWNDKEWKITSQ 140 (178)
T ss_dssp --CTTSEEESSHHHHHHHTTT------CSEEEEEECHHHHHHHGG--GCSEEEEEEESSCCCCSEECCCCCTTSEEEEEE
T ss_pred --CCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHHHHHH--hCCEEEEEEccccccccCcCCCCChHHCEEEEE
Confidence 3678888999999999875 379999999999999995 999999999999999999999999889998765
Q ss_pred cc--CceeCcccEEEEEEEEcCCCCC
Q 025485 229 SQ--PLVENNIQFSFVTYVRVGNTSF 252 (252)
Q Consensus 229 ~~--~~~e~~~~~~f~~Y~r~~~~~~ 252 (252)
+. .+++|+++|+|++|+|+++.-|
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~~~~~~ 166 (178)
T 3tq8_A 141 IKHERDEKNPYPFQFLELRRLENLYF 166 (178)
T ss_dssp EEECCC--CCSCEEEEEEEECCCTTT
T ss_pred EeccccccCCccEEEEEEEECCcccc
Confidence 43 2466889999999999876544
No 3
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=100.00 E-value=1.6e-47 Score=332.50 Aligned_cols=180 Identities=34% Similarity=0.629 Sum_probs=153.9
Q ss_pred CCCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCC---CCCCCCCEEEEccchhccccCCCCCCCCCcEEEECC
Q 025485 66 ARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMST---SDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTH 142 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~---~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr 142 (252)
+||+|++|+|+|+||+||++|+|||++|+|++||+++|+++ .+|++.++|||||||||++|...+||++|+|||+||
T Consensus 3 ~~~~i~livA~s~dg~IG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~~~Pl~~r~niVlSr 82 (206)
T 3nzb_X 3 QQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITR 82 (206)
T ss_dssp CCSCEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTSEEEEECS
T ss_pred CCCEEEEEEEECCCCcEeCCCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhcccCCCCCeEEEEcc
Confidence 47899999999999999999999999999999999999862 344556999999999999986458999999999999
Q ss_pred CCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCC---CCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccC-CC
Q 025485 143 SGSFNIASLENVEICRSIHLALELLAEPPYCS---SIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIP-AI 218 (252)
Q Consensus 143 ~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~---~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP-~~ 218 (252)
+.... ..+++.+++|+++|++.+++.+... ++++|||+||+++|+++|++++||+++||+||..++||+||| ++
T Consensus 83 ~~~~~--~~~~~~v~~sl~eal~~l~~~~~~~~~~~~~~i~ViGG~~iy~~~L~~~l~Del~lT~i~~~~~gd~~FP~~~ 160 (206)
T 3nzb_X 83 NESLD--LGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKF 160 (206)
T ss_dssp SCCCC--CCSSCEEESSHHHHHHHHHHHSCSSSSSEEEEEEECCCHHHHHHHHHSTTEEEEEEEEECSCCCCSEECSSCT
T ss_pred CCCCC--CCCCEEEECCHHHHHHHHhccccccccCCCCcEEEECcHHHHHHHhhCCCCCEEEEEEcccccCCCccCCccc
Confidence 97542 1356889999999999998631101 257999999999999999999999999999999999999999 88
Q ss_pred Ccc----CceEeeec------------cCceeCcccEEEEEEEEc
Q 025485 219 DLS----LFQQRYSS------------QPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 219 d~~----~f~~~~~~------------~~~~e~~~~~~f~~Y~r~ 247 (252)
+.+ .|+++..+ ..+++|++.|+|++|+|+
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~y~f~~y~r~ 205 (206)
T 3nzb_X 161 RDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD 205 (206)
T ss_dssp TSGGGTTTCEECCHHHHHHHHTSCCCCSCEEETTEEEEEEEEECC
T ss_pred CcccccCCcEEEEEeeccccccccccccccccCCeeEEEEEEEEc
Confidence 853 69876533 135789999999999996
No 4
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=100.00 E-value=2.2e-46 Score=315.38 Aligned_cols=159 Identities=35% Similarity=0.672 Sum_probs=144.5
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||++| +|||+|+|||+||+....
T Consensus 5 ~i~li~A~s~dg~Ig~~g~lpW~~~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~~- 73 (165)
T 3s9u_A 5 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGYH- 73 (165)
T ss_dssp EEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSCTTCC-
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHhhc-------CCEEEEcchHHhhhh---hccCCCeEEEECCCCccC-
Confidence 699999999999999999999999999999999998 599999999999997 699999999999997543
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
.+++.+++|+++|++.+++. ++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|+++..
T Consensus 74 --~~~v~v~~~~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~ip~~~~Gd~~Fp~~~~~~~~l~~~ 143 (165)
T 3s9u_A 74 --VEGCEVAHSVEEVFELCKNE------EEIFIFGGAQIYDLFL--PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFV 143 (165)
T ss_dssp --CTTCEEESSHHHHHHHTTTC------SEEEECCCHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCCTTEEEEEE
T ss_pred --CCCEEEECCHHHHHHHhhcC------CCEEEECCHHHHHHHH--hhCCEEEEEEccccccCCCcCCCCChHHCEEEEE
Confidence 46788889999999998853 7999999999999999 7999999999999999999999999889998764
Q ss_pred cc--CceeCcccEEEEEEEEcC
Q 025485 229 SQ--PLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 229 ~~--~~~e~~~~~~f~~Y~r~~ 248 (252)
+. ..++|+++|+|++|+|++
T Consensus 144 ~~~~~~~~~~~~~~f~~y~r~~ 165 (165)
T 3s9u_A 144 EKGLTDEKNPYTYYYHVYEKQQ 165 (165)
T ss_dssp EECCCSSSSCSCEEEEEEEECC
T ss_pred EeccccCCCCceEEEEEEEECC
Confidence 33 246788999999999974
No 5
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=100.00 E-value=1.5e-46 Score=315.58 Aligned_cols=159 Identities=33% Similarity=0.599 Sum_probs=143.1
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||+++ +|||+|+|||+||+....
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~~~~D~~~Fk~~t~-------g~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~~- 70 (162)
T 3ia4_A 2 IVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATL-------GKPIVMGRNTFESIG---RPLPGRLNIVLSRQTDYQ- 70 (162)
T ss_dssp EEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECCCTTCC-
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHHhc-------CcEEEEEchHHhhhh---hhcCCCeEEEEcCCCCCC-
Confidence 699999999999999999999999999999999998 599999999999997 699999999999997543
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
.+++.+++|+++|++.+++ .++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|+++..
T Consensus 71 --~~~~~v~~s~~~al~~l~~------~~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~gd~~Fp~~~~~~w~~~~~ 140 (162)
T 3ia4_A 71 --PEGVTVVATLEDAVVAAGD------VEELMIIGGATIYNQCL--AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEH 140 (162)
T ss_dssp --CTTSEEESSHHHHHHHHTT------CSEEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCGGGSCEEEEEE
T ss_pred --CCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHHHHH--HhCCEEEEEEccccccccccCCCCChHHCEEEEE
Confidence 3678899999999999875 37999999999999999 4999999999999999999999999889998754
Q ss_pred cc--CceeCcccEEEEEEEEcC
Q 025485 229 SQ--PLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 229 ~~--~~~e~~~~~~f~~Y~r~~ 248 (252)
+. .+++|++.|+|++|+|++
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~~ 162 (162)
T 3ia4_A 141 ESYAADDKNPHNYRFSLLERVK 162 (162)
T ss_dssp EEECCBTTBCSCEEEEEEEEC-
T ss_pred EeccccCCCCccEEEEEEEECC
Confidence 32 245688899999999974
No 6
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=100.00 E-value=5.2e-46 Score=311.46 Aligned_cols=157 Identities=32% Similarity=0.608 Sum_probs=141.6
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
+|.+|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||++| +|||+|+|||+||+. ..
T Consensus 1 mi~li~A~s~~g~IG~~g~lpW~l~~D~~~Fk~~t~-------~~~vIMGRkT~esi~---~plp~r~~iVlSr~~-~~- 68 (159)
T 3dau_A 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIILSSQP-GT- 68 (159)
T ss_dssp CEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSSC-CS-
T ss_pred CEEEEEEECCCCeEECCCCcCcCChhHHHHHHHHhc-------CCeEEEechHHhhcc---cccCCCEEEEECCCC-CC-
Confidence 389999999999999999999999999999999998 589999999999997 699999999999997 32
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
.+++.+++|+++|++.++ +.++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|+++..
T Consensus 69 --~~~~~v~~s~~~al~~~~------~~~~i~iiGG~~iy~~~l--~~~D~l~lT~i~~~~~Gd~~Fp~~~~~~~~~~~~ 138 (159)
T 3dau_A 69 --DDRVTWVKSVDEAIAACG------DVPEIMVIGGGRVYEQFL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFS 138 (159)
T ss_dssp --CTTSEEESSHHHHHHTTC------SCSCEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCCCGGGEEEEEE
T ss_pred --CCCeEEECCHHHHHHHhc------CCCCEEEECCHHHHHHHH--hhCCEEEEEEcccccCccccCCCCChHHCEEEEE
Confidence 467889999999999875 358999999999999999 5899999999999999999999999889998754
Q ss_pred cc-C-ceeCcccEEEEEEEEc
Q 025485 229 SQ-P-LVENNIQFSFVTYVRV 247 (252)
Q Consensus 229 ~~-~-~~e~~~~~~f~~Y~r~ 247 (252)
+. + .++|++.|+|++|+|+
T Consensus 139 ~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 3dau_A 139 EFHDADAQNSHSYCFEILERR 159 (159)
T ss_dssp EEECCBTTBSSCEEEEEEEEC
T ss_pred EecccccCCCceEEEEEEEEC
Confidence 32 2 3568899999999995
No 7
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=100.00 E-value=8.6e-45 Score=309.98 Aligned_cols=177 Identities=34% Similarity=0.646 Sum_probs=155.1
Q ss_pred CcEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCC
Q 025485 68 RPYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 146 (252)
Q Consensus 68 ~~i~livA~s~dG~IG~~G~LPW-~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~ 146 (252)
|++++++|+|+||+||++|+||| ++|+|+++|++.|.+..+|++.+++||||||||+++...||||+|+|||+||++..
T Consensus 2 r~i~~i~A~s~dG~Ig~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~~~pl~~r~~iVlSr~~~~ 81 (186)
T 1kmv_A 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKE 81 (186)
T ss_dssp CCEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCSS
T ss_pred ceEEEEEEECCCCCEeCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcccCCCCCCeEEEECCCCcc
Confidence 68999999999999999999999 99999999999999865666777999999999999854589999999999999753
Q ss_pred CCCCCCCe-EEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceE
Q 025485 147 NIASLENV-EICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQ 225 (252)
Q Consensus 147 ~~~~~~~v-~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~ 225 (252)
. .+++ .+++|++++++.|++.++..++++|||+||+++|+++|++++|||++||++|..++||+|||.++...|++
T Consensus 82 ~---~~~~~~v~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~~g~d~~Fp~~~~~~~~l 158 (186)
T 1kmv_A 82 P---PQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKL 158 (186)
T ss_dssp C---CTTCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHHTSCSCEEEEEEEESSCCCCSEECCCCCTTTCEE
T ss_pred C---CCCCEEEECCHHHHHHHHhhcccccCCCeEEEEcCHHHHHHHhcCCCCCEEEEEEeCcccCCCeECCCCChhHcEE
Confidence 2 3566 78899999999998753223578999999999999999999999999999999999999999998788998
Q ss_pred eeec-----cCceeCcccEEEEEEEEc
Q 025485 226 RYSS-----QPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 226 ~~~~-----~~~~e~~~~~~f~~Y~r~ 247 (252)
+... ..++++++.|+|++|+|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~f~~y~r~ 185 (186)
T 1kmv_A 159 LPEYPGVLSDVQEEKGIKYKFEVYEKN 185 (186)
T ss_dssp CSCCTTCCCSCEEETTEEEEEEEEEEC
T ss_pred EEeccccccccccCCCceEEEEEEEEC
Confidence 7552 235688899999999996
No 8
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.2e-44 Score=311.04 Aligned_cols=163 Identities=30% Similarity=0.530 Sum_probs=146.7
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCC
Q 025485 67 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 146 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~ 146 (252)
||+|++++|+|+||+||++|+|||++|+|++||+++|+ ++++||||||||+++. +|||+|+|||+||+...
T Consensus 22 ~r~i~~i~A~s~dG~IG~~g~lpW~~~~D~~~fk~~t~-------~~~vIMGRkTyesi~~--~plp~r~~iVlSr~~~~ 92 (190)
T 3ix9_A 22 TKKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-------NHAILMGRVTFDGMGR--RLLPKRETLILTRNPEE 92 (190)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHTTT--CCCTTCEEEEECCSCCS
T ss_pred ceeEEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHhc-------CCeEEEcCcchhhcCc--cCCCCCEEEEEcCCCCC
Confidence 88899999999999999999999999999999999998 5999999999999984 79999999999999754
Q ss_pred CCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCC-CCccCceE
Q 025485 147 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPA-IDLSLFQQ 225 (252)
Q Consensus 147 ~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~-~d~~~f~~ 225 (252)
. .+++.+++|+++|++.+++. +++|||+||+++|+++| ++|||++||+||...+||+|||+ ++...|++
T Consensus 93 ~---~~~~~v~~~~~eal~~lk~~-----~~~i~ViGG~~ly~~~l--~liDel~lt~ip~~g~Gd~lFp~~~~~~~~~l 162 (190)
T 3ix9_A 93 K---IDGVATFHDVQSVLDWYSAQ-----EKNLYIVGGKQIFQAFE--PYLDEVIVTHIHARVEGDTYFPAEFDLSLFET 162 (190)
T ss_dssp C---CSSSEEESSHHHHHHHHHTS-----CSCEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCCGGGEEE
T ss_pred C---CCCEEEECCHHHHHHHHHhC-----CCCEEEECCHHHHHHHH--hhCCEEEEEEeCcccccCCcCCCCCCccccEE
Confidence 3 35788889999999999863 58999999999999999 59999999999999999999999 88888998
Q ss_pred eeecc-C-ceeCcccEEEEEEEEcC
Q 025485 226 RYSSQ-P-LVENNIQFSFVTYVRVG 248 (252)
Q Consensus 226 ~~~~~-~-~~e~~~~~~f~~Y~r~~ 248 (252)
+..+. + .++|++.|+|++|+|++
T Consensus 163 v~~~~~~~~~~~~~~~~f~~y~r~~ 187 (190)
T 3ix9_A 163 VSSKFYTKDEKNPYDFTIQYRKRKE 187 (190)
T ss_dssp EEEEEECCBTTBCSCEEEEEEEECC
T ss_pred EEEEeccCCCcCCceEEEEEEEEee
Confidence 75432 2 35688899999999974
No 9
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=100.00 E-value=7.9e-45 Score=304.79 Aligned_cols=159 Identities=28% Similarity=0.506 Sum_probs=143.8
Q ss_pred EEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCCC
Q 025485 71 QVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIAS 150 (252)
Q Consensus 71 ~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~~ 150 (252)
.+|+|+|+||+||++|+|||++|+|++||+++|+ ++++||||||||+++. +|||+|+|||+||++...
T Consensus 2 ~li~A~s~dg~IG~~g~lpW~~~~D~~~F~~~t~-------~~~viMGRkTyes~~~--~plp~r~~iVlS~~~~~~--- 69 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTV-------GKIMVVGRRTYESFPK--RPLPERTNVVLTHQEDYQ--- 69 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTT-------TSEEEEEHHHHHHSSS--SSCTTSEEEEECSCTTCC---
T ss_pred EEEEEECCCCeEeCCCCCCCCcHHHHHHHHHHhc-------CCeEEEecchhhhccc--ccCCCCcEEEEcCCCCCC---
Confidence 5899999999999999999999999999999998 5999999999999983 699999999999997543
Q ss_pred CCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeeecc
Q 025485 151 LENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQ 230 (252)
Q Consensus 151 ~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~~~ 230 (252)
.+++.+++|++++++.++++ ++++|||+||+++|+++| ++|||++||+||..++||+|||+++...|+++..+.
T Consensus 70 ~~~~~~~~~~~~~l~~lk~~----~~~~i~viGG~~l~~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~~~l~~~~~ 143 (162)
T 3dfr_A 70 AQGAVVVHDVAAVFAYAKQH----LDQELVIAGGAQIFTAFK--DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRT 143 (162)
T ss_dssp CTTSEEESSHHHHHHHHHHC----CSSCEEECCCHHHHHHTG--GGCCEEEEEEESSCCCCSEECCCCCGGGEEEEEEEE
T ss_pred CCCEEEECCHHHHHHHHhcC----CCCCEEEECCHHHHHHHH--hhCCEEEEEEecccccccCcCCCCChhHcEEEEEEc
Confidence 46788889999999999976 578999999999999999 699999999999999999999999988899876543
Q ss_pred -CceeCcccEEEEEEEEc
Q 025485 231 -PLVENNIQFSFVTYVRV 247 (252)
Q Consensus 231 -~~~e~~~~~~f~~Y~r~ 247 (252)
..++|++.|+|.+|+|+
T Consensus 144 ~~~~~~~~~~~f~~y~r~ 161 (162)
T 3dfr_A 144 VEDTNPALTHTYEVWQKK 161 (162)
T ss_dssp ECCSSGGGCEEEEEEEEC
T ss_pred ccccCCCceEEEEEEEEC
Confidence 34578889999999996
No 10
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=4.9e-44 Score=345.98 Aligned_cols=184 Identities=42% Similarity=0.715 Sum_probs=159.4
Q ss_pred CCCCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhC------CCCCCCCCEEEEccchhccccCCCCCCCCCcEE
Q 025485 65 RARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKTWESISPLYRPLPGRLNV 138 (252)
Q Consensus 65 ~~~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~------~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~i 138 (252)
..||+|.+|+|++.||+||++|+|||++|+||+||+++|++ ..+|++.++||||||||||+|.+++|||+|.||
T Consensus 18 ~~~~~islIvA~~~ng~IG~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k~rPLP~R~NI 97 (521)
T 3irm_A 18 LALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGRLNV 97 (521)
T ss_dssp CSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTEEEE
T ss_pred cCCceEEEEEEECCCCceecCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccccCCCCCCeEE
Confidence 34899999999999999999999999999999999999998 667888899999999999999766899999999
Q ss_pred EECCCCCCC-----C--------CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCC---CcCEEEE
Q 025485 139 VLTHSGSFN-----I--------ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAP---ECDAIHI 202 (252)
Q Consensus 139 VlSr~~~~~-----~--------~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~---liDel~L 202 (252)
||||+.... . ...+++.+++|+++|++.+++.+.+.+.++||||||++||+++|+++ +||+++|
T Consensus 98 VLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~SleeAL~~l~~~~~~~~~~~VfVIGGa~IY~~~L~~~~~~l~D~l~l 177 (521)
T 3irm_A 98 VLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYR 177 (521)
T ss_dssp EECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEEEEE
T ss_pred EEecccccccccccccccccccccCCCCeEEECCHHHHHHHHhccccccCCCeEEEEcCHHHHHHHHhCCccccCCEEEE
Confidence 999997531 0 01356889999999999998753233468999999999999999999 9999999
Q ss_pred EEEC-CccCCcccc--CCCCccC-----ceEeeeccCc-eeCc--ccEEEEEEEEcC
Q 025485 203 TKIE-TSIECDTFI--PAIDLSL-----FQQRYSSQPL-VENN--IQFSFVTYVRVG 248 (252)
Q Consensus 203 T~I~-~~~eGD~fF--P~~d~~~-----f~~~~~~~~~-~e~~--~~~~f~~Y~r~~ 248 (252)
|+|+ ..++||+|| |++|.+. |+++..+... ++++ +.|+|++|+|++
T Consensus 178 T~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~F~~y~r~n 234 (521)
T 3irm_A 178 TTIRASESSCSVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYYFEKLIPRN 234 (521)
T ss_dssp EEECCSSCCCSEECCCCCTTSGGGTTCCEEEEEECCCEECSSSSCCEEEEEEEEECC
T ss_pred EEecCCCcccceecCCCCCChhhccccceEEEEeecccccCCCCeeeEEEEEEEECC
Confidence 9999 888999999 9999877 9988755443 3366 899999999963
No 11
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=100.00 E-value=7.3e-44 Score=315.74 Aligned_cols=174 Identities=34% Similarity=0.548 Sum_probs=151.4
Q ss_pred cEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHHhCCCC--------------------------------------C
Q 025485 69 PYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSD--------------------------------------P 109 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW-~~~eD~~~F~~~T~~~~~--------------------------------------~ 109 (252)
+..++.|++.||+||++|+||| |+|+||+||+++|+++.+ +
T Consensus 26 ~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~ 105 (238)
T 2bl9_A 26 TKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNAD 105 (238)
T ss_dssp SCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------
T ss_pred cEEEEEEecCCCeecCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccccccccccccc
Confidence 4667889999999999999999 999999999999984311 2
Q ss_pred CCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHH
Q 025485 110 GKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILR 189 (252)
Q Consensus 110 ~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~ 189 (252)
+.+++|||||||||++|..++|||+|+|||+||+..... ..+++.+++|+++|++.+++. ++++|||+||++||+
T Consensus 106 ~~g~~VIMGRkTyEsi~~~~~PLp~R~nIVlSr~~~~~~-~~~~v~v~~sl~eal~~lk~~----~~~~I~ViGGa~Iy~ 180 (238)
T 2bl9_A 106 KLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKED-VKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYR 180 (238)
T ss_dssp CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTTT-CCSSCEEESCHHHHHHHHHTC----CCSCEEEEECHHHHH
T ss_pred ccCCEEEEchhHhhhhcccccCcCCCEEEEEeCCCcccc-CCCCEEEECCHHHHHHHHHhC----CCCCEEEECcHHHHH
Confidence 235999999999999985457999999999999864321 246788889999999999875 578999999999999
Q ss_pred HHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeeeccCceeCcccEEEEEEEEc
Q 025485 190 EALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 190 ~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
++|++|+||+++||+||..++||+|||.++...|+++..+....+|++.|+|.+|+|+
T Consensus 181 ~~L~~glvDel~lT~ip~~~gGD~~FP~~d~~~~~lv~~~~~~~~~~~~~~f~~y~r~ 238 (238)
T 2bl9_A 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV 238 (238)
T ss_dssp HHHHTTCCSEEEEEEEEEEECCSEECCCCCGGGEEEEEECCCEEETTEEEEEEEEEEC
T ss_pred HHhcccCCCEEEEEEeccccCCceeCCCCCchhcEEEEEEecccCCCccEEEEEEEeC
Confidence 9999999999999999999999999999998889988776556788999999999985
No 12
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=1.3e-43 Score=342.61 Aligned_cols=178 Identities=26% Similarity=0.493 Sum_probs=159.1
Q ss_pred cCCCCcEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHHhC------CCCCCCCCEEEEccchhccccCCCCCCCCCc
Q 025485 64 LRARRPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMS------TSDPGKRNAVVMGRKTWESISPLYRPLPGRL 136 (252)
Q Consensus 64 ~~~~~~i~livA~s~dG~IG~~G~LPW~-~~eD~~~F~~~T~~------~~~~~~~~avIMGRkTyeslp~~~~pl~~r~ 136 (252)
..+||++++|+|+|+||+||++|+|||+ +|+|++||+++|++ +.+|++.++|||||||||++|...+|||+|+
T Consensus 9 ~~~MrkI~livA~SldG~IG~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~~rPLp~R~ 88 (515)
T 3nrr_A 9 YEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLKNRI 88 (515)
T ss_dssp TTTCCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCTTEE
T ss_pred CCCCceEEEEEEECCCCcCCCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhccCCCCCCe
Confidence 3459999999999999999999999999 99999999999986 3456778999999999999986458999999
Q ss_pred EEEECCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccC
Q 025485 137 NVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIP 216 (252)
Q Consensus 137 ~iVlSr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP 216 (252)
|||+||+... .+++.+++|+++|++.|++. .++++|||+||++||+++|++++||+++||+||..++||+|||
T Consensus 89 nIVlSrt~~~----~~~v~V~~sl~eal~~Lk~~---~~~~~I~VIGGg~Iy~~~L~~~liDel~LT~I~~~~~GDtfFP 161 (515)
T 3nrr_A 89 NVILSRTVKE----VPGCLVYEDLSTAIRDLRAN---VPHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFP 161 (515)
T ss_dssp EEEECSSCCC----CTTEEEESSHHHHHHHHHHH---SCCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCCSEECC
T ss_pred EEEECCCCCC----CCCEEEECCHHHHHHHHhhc---cCCCCEEEECCHHHHHHHhhCCCCCEEEEEEecCccCCCccCC
Confidence 9999999742 35788999999999999864 1578999999999999999999999999999999999999999
Q ss_pred CCCccCceEeeeccCceeCcccEEEEEEEEcCC
Q 025485 217 AIDLSLFQQRYSSQPLVENNIQFSFVTYVRVGN 249 (252)
Q Consensus 217 ~~d~~~f~~~~~~~~~~e~~~~~~f~~Y~r~~~ 249 (252)
++ .+.|+++..+...+++++.|+|.+|+|+++
T Consensus 162 ~~-~~~w~~v~~~~~~~~~~~~y~F~~y~R~~~ 193 (515)
T 3nrr_A 162 DI-PDTFEITAISPTFSTDFVSYDFVIYERKDC 193 (515)
T ss_dssp CC-CTTEEEEEECCCEECSSCEEEEEEEEECC-
T ss_pred Cc-hhhCEEEEEecccccCCCceEEEEEEEccc
Confidence 99 888999876656678999999999999854
No 13
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=100.00 E-value=1.2e-42 Score=292.50 Aligned_cols=162 Identities=36% Similarity=0.586 Sum_probs=140.0
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCC
Q 025485 67 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 146 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~ 146 (252)
++++++++|+|+||+||++|+|||++|+|+++|++.|. ++++||||||||+++.+.||+|+|+|||+||++..
T Consensus 3 ~~~i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iV~S~~~~~ 75 (167)
T 2w3w_A 3 RAEVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTM-------GHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDF 75 (167)
T ss_dssp CCCCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTC
T ss_pred ceEEEEEEEECCCCcCcCCCCcCccchHHHHHHHHHhc-------CCeEEEcchHhhhcCccccCCCCCeEEEEeCCCCC
Confidence 34599999999999999999999999999999999998 48999999999999854479999999999999653
Q ss_pred CCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc---CCccccCCCCccCc
Q 025485 147 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI---ECDTFIPAIDLSLF 223 (252)
Q Consensus 147 ~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~---eGD~fFP~~d~~~f 223 (252)
. .+++.+++|++++++ +++ ++++|||+||+++|+++|+ +|||++||++|..+ +||+|||+++.+ |
T Consensus 76 ~---~~~~~~~~~~~~~l~-l~~-----~~~~i~ViGG~~l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~ 143 (167)
T 2w3w_A 76 V---AEGARVAGSLEAALA-YAG-----SDPAPWVIGGAQIYLLALP--HATRCEVTEIEIDLRRDDDDALAPALDDS-W 143 (167)
T ss_dssp C---CTTSEEESSHHHHHH-HTT-----TCSSCEEEECHHHHHHHGG--GCSEEEEEEEECCCCCCTTSEECCCCCTT-C
T ss_pred C---CCCEEEECCHHHHHH-hhc-----CCCeEEEEchHHHHHHHHH--HCCEEEEEEEEeecCCCCccEeCCCCCcc-c
Confidence 2 467888889999994 543 5789999999999999996 99999999999999 899999999876 9
Q ss_pred eEeeeccCceeCcccEEEEEEEEc
Q 025485 224 QQRYSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 224 ~~~~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
++...+..+.++++.|+|.+|+|+
T Consensus 144 ~l~~~~~~~~~~~~~~~f~~y~r~ 167 (167)
T 2w3w_A 144 VGETGEWLASRSGLRYRFHSYRRD 167 (167)
T ss_dssp EEEECCCEECTTSCEEEEEEEEC-
T ss_pred EEeeccccccCCCCcEEEEEEEeC
Confidence 883323334566699999999985
No 14
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=100.00 E-value=8.2e-42 Score=286.01 Aligned_cols=158 Identities=39% Similarity=0.633 Sum_probs=141.1
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCC
Q 025485 70 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 149 (252)
Q Consensus 70 i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~ 149 (252)
+++++|+|+||+||++|++||++|+|++||+++|. ++++||||||||+++ ||+|+|+|||+||++...
T Consensus 2 i~~~~A~s~dG~Ig~~g~l~W~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~~-- 69 (164)
T 1zdr_A 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-------GHAIVMGRKTFEAIG---RPLPGRDNVVVTGNRSFR-- 69 (164)
T ss_dssp EEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTCC--
T ss_pred EEEEEEEcCCCeEeCCCCcccCCHHHHHHHHHHhc-------CCEEEECCcHHhcCC---CCCCCCeEEEEcCCCCcC--
Confidence 88999999999999999999999999999999887 699999999999997 799999999999997532
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeeec
Q 025485 150 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 229 (252)
Q Consensus 150 ~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~~ 229 (252)
.+++.+++|++++++.+++ ++++|||+||+++|+++|+ +|||++||++|..++||+|||.++...|+++..+
T Consensus 70 -~~~~~~~~~~~~~l~~l~~-----~~~~i~viGG~~l~~~~l~--lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~~~ 141 (164)
T 1zdr_A 70 -PEGCLVLHSLEEVKQWIAS-----RADEVFIIGGAELFRATMP--IVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYT 141 (164)
T ss_dssp -CTTCEEECSHHHHHHHHHT-----CCSCEEEEECHHHHHHHGG--GCCEEEEEEESSCCCCSEECCCCCTTTEEEEEEE
T ss_pred -CCCeEEECCHHHHHHHHhc-----CCCeEEEECcHHHHHHHHH--hCCEEEEEEeccccCCcEECCCCChhHcEEEEEE
Confidence 4578888899999999986 3589999999999999995 8999999999999999999999988889887543
Q ss_pred c--CceeCcccEEEEEEEEc
Q 025485 230 Q--PLVENNIQFSFVTYVRV 247 (252)
Q Consensus 230 ~--~~~e~~~~~~f~~Y~r~ 247 (252)
. .+++++++|+|.+|+|+
T Consensus 142 ~~~~~~~~~~~~~~~~Y~r~ 161 (164)
T 1zdr_A 142 PGGKDEKNPYEHAFIIYERK 161 (164)
T ss_dssp ECCCSSSSCSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEc
Confidence 2 23457789999999997
No 15
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=4.5e-43 Score=342.56 Aligned_cols=178 Identities=30% Similarity=0.515 Sum_probs=157.9
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHHhCC----------------------------CCCCCCCEEEE
Q 025485 67 RRPYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMST----------------------------SDPGKRNAVVM 117 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~~G~LPW-~~~eD~~~F~~~T~~~----------------------------~~~~~~~avIM 117 (252)
+.++.+|+|++.||+||++|+||| |+|+||+||+++|+++ .+|++.++|||
T Consensus 25 ~~~i~lIvA~~~n~gIG~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VIM 104 (608)
T 3qg2_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (608)
T ss_dssp CSCCCCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEEE
T ss_pred CceEEEEEEeCCCCccccCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEEE
Confidence 557999999999999999999999 8999999999999832 25677899999
Q ss_pred ccchhccccCCCCCCCCCcEEEECCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCc
Q 025485 118 GRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPEC 197 (252)
Q Consensus 118 GRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~li 197 (252)
|||||||+|.+++|||+|+||||||+..... ..+++.+++|+++|++.+++. +.++||||||++||+++|++++|
T Consensus 105 GRKTfESIp~~frPLPgR~NIVLSR~~~~~~-~~~gv~V~~sleeal~~lk~~----~~~~IfVIGGa~IY~~~L~~~la 179 (608)
T 3qg2_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKED-FDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLI 179 (608)
T ss_dssp EHHHHHHSCGGGCSCTTEEEEEECSSCCGGG-CCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCC
T ss_pred chHHHHhhccccCCCCCCeEEEECCCCcccc-CCCCEEEECCHHHHHHHHhcC----CCCeEEEECCHHHHHHHcccCCC
Confidence 9999999986558999999999999964311 135788999999999999875 56899999999999999999999
Q ss_pred CEEEEEEECCccCCccccCCCCccCceEeeeccCceeCcccEEEEEEEEcCC
Q 025485 198 DAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVRVGN 249 (252)
Q Consensus 198 Del~LT~I~~~~eGD~fFP~~d~~~f~~~~~~~~~~e~~~~~~f~~Y~r~~~ 249 (252)
|+++||+|+..++||+|||+++.+.|+++..+....++++.|+|++|+|+++
T Consensus 180 DeL~LT~I~~~~eGDtfFP~id~~~w~~~~~~~~~~~~~~~y~F~~y~R~~~ 231 (608)
T 3qg2_A 180 KKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNN 231 (608)
T ss_dssp SEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC
T ss_pred CEEEEEEeCCccCCCccCCCCChHHcEEEEEeeeeccCCCceEEEEEEECCC
Confidence 9999999999999999999999999999887766778999999999999854
No 16
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=100.00 E-value=4.5e-42 Score=286.42 Aligned_cols=156 Identities=38% Similarity=0.611 Sum_probs=137.5
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCC
Q 025485 69 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 148 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~ 148 (252)
++++++|+|+||+||++|+|||++|+|+++|++.|. ++++||||||||+++ +|+|+|+|||+||++...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~---~pl~~r~~iV~S~~~~~~- 70 (159)
T 2w9h_A 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG---KPLPNRRNVVLTSDTSFN- 70 (159)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTCC-
T ss_pred EEEEEEEECCCCeEcCCCccCccchHHHHHHHHHhc-------CCEEEECCChhhccc---ccCCCCEEEEEcCCCCcC-
Confidence 699999999999999999999999999999999998 599999999999997 799999999999997542
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEeee
Q 025485 149 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 228 (252)
Q Consensus 149 ~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~~~ 228 (252)
.+++.++++++++++. +++|||+||+++|+++| ++|||++||++|..++||+|||+++...|+++..
T Consensus 71 --~~~~~~~~~~~~~l~~---------~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~Gd~~Fp~~~~~~~~l~~~ 137 (159)
T 2w9h_A 71 --VEGVDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI--DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASS 137 (159)
T ss_dssp --CTTCEEECSGGGGGGS---------CSCEEEEECHHHHHHHT--TTCSEEEEEEECSCCCCSEECCCCCTTTEEEEEE
T ss_pred --CCCeEEECCHHHHHhc---------CCcEEEEChHHHHHHHH--HhCCEEEEEEecccccCCeeCCCCChhHcEEEEE
Confidence 3578888899998864 37899999999999999 4999999999999999999999998788998754
Q ss_pred cc--CceeCcccEEEEEEEEcC
Q 025485 229 SQ--PLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 229 ~~--~~~e~~~~~~f~~Y~r~~ 248 (252)
+. .+++++++|.|.+|+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~Y~r~~ 159 (159)
T 2w9h_A 138 VEGKLDEKNTIPHTFLHLIRKK 159 (159)
T ss_dssp EECCCBTTBCSCEEEEEEEEC-
T ss_pred EeccccccCCccEEEEEEEECC
Confidence 32 234577899999999974
No 17
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=3.6e-42 Score=332.94 Aligned_cols=173 Identities=39% Similarity=0.657 Sum_probs=156.6
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCC
Q 025485 67 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 146 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~ 146 (252)
||++++|+|+|+||+||++|+|||++|+|++||+++|++..+|++.++|||||||||+++ .||||+|+|||+||+...
T Consensus 4 MrkI~lIvA~SldG~IG~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig--~~PLp~R~nIVlSrt~~~ 81 (521)
T 3hj3_A 4 KNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSSLPQ 81 (521)
T ss_dssp CCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT--TCCCTTSEEEEECSSSCC
T ss_pred CceEEEEEEECCCCcEECCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC--cccCCCCeEEEEcCCCcc
Confidence 889999999999999999999999999999999999998767888899999999999995 489999999999999754
Q ss_pred CCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECC-ccCCccccCCCCccCceE
Q 025485 147 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIET-SIECDTFIPAIDLSLFQQ 225 (252)
Q Consensus 147 ~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~-~~eGD~fFP~~d~~~f~~ 225 (252)
.. ..+++.+++|+++|++.+++.+ +.++|||+||+++|+++|++++||+++||+||. .++||+|||+++.+ |++
T Consensus 82 ~~-~~~~~~V~~sl~eal~~lk~~~---g~~~I~VIGGa~ly~~~L~~~liDel~LT~Ipv~~~~GDtfFP~~d~~-w~l 156 (521)
T 3hj3_A 82 DE-ADPNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLP 156 (521)
T ss_dssp CC-SCSSEEEESSTTTTTTSSSSCT---TEEEEEEEECHHHHHHHHHTTCCSEEEEEEECCCSSCCSEECCCCCTT-EEE
T ss_pred cC-CCCCEEEECCHHHHHHHHhhcc---CCCCEEEEeCHHHHHHHhcCCCCCEEEEEEEeccCcCcCccCCCCCCC-cEE
Confidence 21 2356889999999999998751 348999999999999999999999999999999 78999999999987 999
Q ss_pred eeeccCceeCcccEEEEEEEE
Q 025485 226 RYSSQPLVENNIQFSFVTYVR 246 (252)
Q Consensus 226 ~~~~~~~~e~~~~~~f~~Y~r 246 (252)
+.++..++++++.|+|++|+|
T Consensus 157 v~~~~~~~~~~~~y~F~~y~R 177 (521)
T 3hj3_A 157 VYMSQTFCTKNISYDFMIFEK 177 (521)
T ss_dssp EEECCCEEETTEEECCEEEEE
T ss_pred EEeecccccCCCceEEEEEEe
Confidence 877666778999999999999
No 18
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=100.00 E-value=1.8e-42 Score=313.07 Aligned_cols=175 Identities=30% Similarity=0.522 Sum_probs=150.0
Q ss_pred cEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHHhCCCC----------------------------CCCCCEEEEcc
Q 025485 69 PYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSD----------------------------PGKRNAVVMGR 119 (252)
Q Consensus 69 ~i~livA~s~dG~IG~~G~LPW-~~~eD~~~F~~~T~~~~~----------------------------~~~~~avIMGR 119 (252)
++.+|+|++.||+||++|+||| ++|+||+||+++|+++.+ ++.+++|||||
T Consensus 27 ~~~~i~a~~~n~~IG~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIMGR 106 (280)
T 1j3k_A 27 KKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGR 106 (280)
T ss_dssp GGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEEEH
T ss_pred cEEEEEEecCCceeccCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEEcc
Confidence 4668899999999999999999 999999999999984221 11259999999
Q ss_pred chhccccCCCCCCCCCcEEEECCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCE
Q 025485 120 KTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDA 199 (252)
Q Consensus 120 kTyeslp~~~~pl~~r~~iVlSr~~~~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDe 199 (252)
||||++|..+||||+|+|||+||+..... ..+++.+++++++|++.|++. ++++|||+||++||+++|++|++|+
T Consensus 107 kTyEsip~~~~PLp~R~nIVlSr~~~~~~-~~~~v~vv~sl~eal~~lk~~----~~~~I~ViGGa~ly~~~L~~glvDe 181 (280)
T 1j3k_A 107 TNWESIPKKFKPLSNRINVILSRTLKKED-FDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLIKK 181 (280)
T ss_dssp HHHHHSCGGGCSCTTSEEEEECSSCCGGG-CCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCCSE
T ss_pred hHhhhhcccccCcCCCeEEEEeCCCcccc-CCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHhcCccCCE
Confidence 99999984457999999999999964311 246788888999999999875 5789999999999999999999999
Q ss_pred EEEEEECCccCCccccCCCCccCceEeeeccCceeCcccEEEEEEEEcC
Q 025485 200 IHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 200 l~LT~I~~~~eGD~fFP~~d~~~f~~~~~~~~~~e~~~~~~f~~Y~r~~ 248 (252)
++||+||..++||+|||.++...|+++..+....++++.|+|.+|+|++
T Consensus 182 l~LT~Ip~~lgGD~~FP~~d~~~~~lv~~~~~~~~~g~~~~f~~Y~R~~ 230 (280)
T 1j3k_A 182 IYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTN 230 (280)
T ss_dssp EEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECC
T ss_pred EEEEEeccccCCceeCCCCChhhcEEEEEEeeccCCCceEEEEEEEECC
Confidence 9999999999999999999888899876654345677889999999974
No 19
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=100.00 E-value=1.1e-41 Score=284.31 Aligned_cols=159 Identities=27% Similarity=0.481 Sum_probs=138.6
Q ss_pred CcEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCC
Q 025485 68 RPYQVVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 146 (252)
Q Consensus 68 ~~i~livA~s~dG~IG~~G~LPW-~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~ 146 (252)
+++++++|+|+||+||++|++|| ++|+|++||+++|. ++++||||||||+++ ||+|+|+|||+||++..
T Consensus 1 m~i~~~~A~s~dG~Ig~~g~l~W~~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~ 70 (162)
T 1vdr_A 1 MELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESMR---DDLPGSAQIVMSRSERS 70 (162)
T ss_dssp -CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTS-------SSCEEEEHHHHHHTT---TSCCSSSEEEECSSCCC
T ss_pred CEEEEEEEEcCCCcEECCCCccccCChHHHHHHHHhhC-------CCEEEEcchHHhhCC---ccCCcCeEEEEcCCCcc
Confidence 36999999999999999999999 99999999999887 699999999999997 79999999999999651
Q ss_pred CCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCccCCccccCCCCccCceEe
Q 025485 147 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQR 226 (252)
Q Consensus 147 ~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~eGD~fFP~~d~~~f~~~ 226 (252)
. ..+++.+++|++++++.+++. ++++|||+||+++|+++|+ +|||++||++|..++||+|||.++...|+++
T Consensus 71 ~--~~~~~~~~~~~~~~l~~l~~~----~~~~i~viGG~~l~~~~l~--lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~ 142 (162)
T 1vdr_A 71 F--SVDTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYALFQP--HLDRMVLSRVPGEYEGDTYYPEWDAAEWELD 142 (162)
T ss_dssp C--CSSSCCEESSHHHHHHHHHHT----TCSCEEEEECHHHHHHHGG--GCSEEEEEEEEEECCCSEECCCCCTTTEEEE
T ss_pred c--CCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHHH--hCCEEEEEEEccccccCEECCCCCchHCEEE
Confidence 1 245777778999999999875 6789999999999999995 8999999999999999999999887789886
Q ss_pred eeccCceeCcccEEEEEEEEcCC
Q 025485 227 YSSQPLVENNIQFSFVTYVRVGN 249 (252)
Q Consensus 227 ~~~~~~~e~~~~~~f~~Y~r~~~ 249 (252)
..+ ...+|.|++|+|++.
T Consensus 143 ~~~-----~~~~~~~~~Y~~~~~ 160 (162)
T 1vdr_A 143 AET-----DHEGFTLQEWVRSAS 160 (162)
T ss_dssp EEE-----ECSSCEEEEEEEC--
T ss_pred EEe-----cCCCEEEEEEEECCC
Confidence 543 122799999999743
No 20
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=100.00 E-value=1.9e-41 Score=283.21 Aligned_cols=154 Identities=31% Similarity=0.628 Sum_probs=135.5
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCCCC
Q 025485 70 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 149 (252)
Q Consensus 70 i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~~~ 149 (252)
+++++|+|+||+||++|+|||++|+|+++|++.|. .+++||||||||+++...+|+|+|+|||+||++...
T Consensus 2 i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~~-- 72 (159)
T 1df7_A 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFM-- 72 (159)
T ss_dssp EEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTCC--
T ss_pred EEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHHC-------CCEEEEeChHHhhcccccCCCCcCEEEEEeCCCCcC--
Confidence 88999999999999999999999999999999998 489999999999998545799999999999996532
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc---CCccccCCCCccCceEe
Q 025485 150 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI---ECDTFIPAIDLSLFQQR 226 (252)
Q Consensus 150 ~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~---eGD~fFP~~d~~~f~~~ 226 (252)
.+++.+++|++++++ +++|||+||+++|+++|+ +|||++||++|..+ +||+|||.++.+ | ++
T Consensus 73 -~~~~~~~~~~~~~l~----------~~~i~viGG~~l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~-~~ 137 (159)
T 1df7_A 73 -ASGAEVVGSLEEALT----------SPETWVIGGGQVYALALP--YATRCEVTEVDIGLPREAGDALAPVLDET-W-RG 137 (159)
T ss_dssp -CTTSEEESSHHHHTT----------SSSEEECCCHHHHHHHGG--GCSEEEEEEECCCCCCCTTCEECCCCCTT-C-EE
T ss_pred -CCCEEEECCHHHHhc----------CCcEEEECcHHHHHHHHH--HCCEEEEEEEeeecCCCCccEeCCCCCcc-c-EE
Confidence 457888889999886 268999999999999995 99999999999999 899999999876 9 76
Q ss_pred eecc-CceeCcccEEEEEEEEc
Q 025485 227 YSSQ-PLVENNIQFSFVTYVRV 247 (252)
Q Consensus 227 ~~~~-~~~e~~~~~~f~~Y~r~ 247 (252)
..+. ++.++++.|+|.+|+|+
T Consensus 138 ~~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 1df7_A 138 ETGEWRFSRSGLRYRLYSYHRS 159 (159)
T ss_dssp EECCCEECTTSCEEEEEEEECC
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 5433 34566699999999985
No 21
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=100.00 E-value=1.9e-41 Score=290.82 Aligned_cols=173 Identities=38% Similarity=0.689 Sum_probs=146.0
Q ss_pred CCcEEEEEEEeCCC-eeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCC
Q 025485 67 RRPYQVVVAATHDM-GIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGS 145 (252)
Q Consensus 67 ~~~i~livA~s~dG-~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~ 145 (252)
.+++++++|+|+|| .||++|+|||++++|++||+++|++..++.+.+++||||||||+++.+.+||++|+|||+||+..
T Consensus 3 ~~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~ 82 (192)
T 1aoe_A 3 KPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYE 82 (192)
T ss_dssp SCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTCC
T ss_pred CCEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccccCCCCCeEEEEcCCCc
Confidence 46899999999776 55999999999999999999999865455667999999999999975446999999999999864
Q ss_pred CCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCc----cCCccccCCCCcc
Q 025485 146 FNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETS----IECDTFIPAIDLS 221 (252)
Q Consensus 146 ~~~~~~~~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~----~eGD~fFP~~d~~ 221 (252)
.+. ..+++.+++|++++++. ++ ++++|||+||+++|+++|++++|||++||++|.. ++||+|||. +..
T Consensus 83 ~~~-~~~~~~v~~~~~~al~~-~~-----~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~lG~G~~gd~~fp~-~~~ 154 (192)
T 1aoe_A 83 NEI-IDDNIIHASSIESSLNL-VS-----DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKF-PLE 154 (192)
T ss_dssp CEE-EETTEEEESSHHHHHHT-CC-----SEEEEEECCCHHHHHHHTTSTTEEEEEEEEEECSCGGGSCCCEECCC-CGG
T ss_pred ccc-CCCCEEEECCHHHHHHh-hc-----CCCeEEEEcCHHHHHHHhcCCCCCEEEEEEEEcccCCCCccceECCC-ChH
Confidence 211 13578889999999987 53 5689999999999999999999999999999999 789999994 457
Q ss_pred CceEeeec------------cCceeCcccEEEEEEEEc
Q 025485 222 LFQQRYSS------------QPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 222 ~f~~~~~~------------~~~~e~~~~~~f~~Y~r~ 247 (252)
.|+++..+ ..+++|++.|+|++|+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~y~r~ 192 (192)
T 1aoe_A 155 SWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192 (192)
T ss_dssp GEEECCHHHHHHHHTTCCCCSSEEETTEEEEEEEEEEC
T ss_pred HcEEEeeeccccccccccccccccCCCeeEEEEEEEEC
Confidence 79876432 235678899999999995
No 22
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=100.00 E-value=2.3e-41 Score=297.83 Aligned_cols=179 Identities=37% Similarity=0.589 Sum_probs=148.2
Q ss_pred CCcEEEEEEEeCCC-eeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCC
Q 025485 67 RRPYQVVVAATHDM-GIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGS 145 (252)
Q Consensus 67 ~~~i~livA~s~dG-~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~ 145 (252)
.+++++++|+|+|| .||++|+|||++++|++||+++|++..+|++.++|||||||||+++.+.+||++|+|||+||+..
T Consensus 3 ~~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~wrPlp~r~~iVlSr~~~ 82 (227)
T 3cse_A 3 KVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFD 82 (227)
T ss_dssp CCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTSS
T ss_pred CcEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccccCCCcCeEEEEeCCCc
Confidence 36799999999776 55999999999999999999999876667778999999999999985445999999999999864
Q ss_pred CCCC-CCCCeEEeCCHHHHHHHhcCCC-CCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCc----cC-CccccC-C
Q 025485 146 FNIA-SLENVEICRSIHLALELLAEPP-YCSSIEKVFVIGGGQILREALNAPECDAIHITKIETS----IE-CDTFIP-A 217 (252)
Q Consensus 146 ~~~~-~~~~v~v~~si~eal~~l~~~~-~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~----~e-GD~fFP-~ 217 (252)
.... ..+++.+++|+++|++.|++.+ ...+.++|||+||++||+++| ++||+++||+||.. ++ ||+||| .
T Consensus 83 ~~~~~~~~~~~v~~sl~~al~~lk~~~~~~~~~~~I~ViGG~~ly~~~L--~lvDel~lT~ip~~lG~G~~~gD~~Fp~~ 160 (227)
T 3cse_A 83 GELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQ 160 (227)
T ss_dssp SSCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHHHHT--TTCSEEEEEEEEECTTSCCCCCSEECCHH
T ss_pred cccccCCCCEEEeCCHHHHHHHHHhhhcccCCCCeEEEEcCHHHHHHHH--HhCCEEEEEEEEccccCCCccccccCCCC
Confidence 3210 1245888999999999998630 001468999999999999999 99999999999998 66 999999 6
Q ss_pred CCccCceEeeec--------------c--------------CceeCcccEEEEEEEEcC
Q 025485 218 IDLSLFQQRYSS--------------Q--------------PLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 218 ~d~~~f~~~~~~--------------~--------------~~~e~~~~~~f~~Y~r~~ 248 (252)
++...|++ ..+ + .++|++++|.|++|+|+.
T Consensus 161 ~~~~~w~l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~y~f~~~~r~~ 218 (227)
T 3cse_A 161 ELEQRFYD-NSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKL 218 (227)
T ss_dssp HHHHHEEE-CGGGHHHHSCTTCCCSSCCEEEEETTEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CChhhcEe-chhhhhhhcCccccCCccccccccccccccccceeECCEEEEEEEEEEec
Confidence 77677877 321 2 457899999999999973
No 23
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=100.00 E-value=3.3e-35 Score=252.67 Aligned_cols=131 Identities=27% Similarity=0.456 Sum_probs=111.0
Q ss_pred EEEEEEEeC--------CCeeecCCCCCC-CChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEE
Q 025485 70 YQVVVAATH--------DMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVL 140 (252)
Q Consensus 70 i~livA~s~--------dG~IG~~G~LPW-~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVl 140 (252)
|++|+|+|+ ||+||++|+||| ++++|++||++.|+ +++|||||||||++| +|||+|+|||+
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG~~g~lpW~~l~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~R~~iVl 71 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTE-------GTIMIMGAKTFQSLP---TLLPGRSHIVV 71 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHT-------TSEEEEEHHHHHTCS---SCCTTSCEEEE
T ss_pred EEEEEEEcCccccCCCcCCeECCCCCCCCcCChHHHHHHHHHhc-------CCEEEEchhHhhhcc---cccCCCcEEEE
Confidence 899999999 999999999999 99999999999998 599999999999997 49999999999
Q ss_pred CCCCC-CCC-CCCC-----------------CeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEE
Q 025485 141 THSGS-FNI-ASLE-----------------NVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIH 201 (252)
Q Consensus 141 Sr~~~-~~~-~~~~-----------------~v~v~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~ 201 (252)
||++. .+. ...+ ...+.+|++++++.+++ ++++|||+||+++|+++| ++||+++
T Consensus 72 Sr~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~sl~eal~~lk~-----~~~~I~ViGG~~ly~~~L--~lvDel~ 144 (193)
T 1juv_A 72 CDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLD-----QNSKVSVIGGPALLYAAL--PYADEVV 144 (193)
T ss_dssp CCTTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEEC-----TTSCEEEEECHHHHHHHG--GGCSEEE
T ss_pred cCCCcccccccccccceeecccccccccccccceecCCHHHHHHHHHc-----CCCcEEEECcHHHHHHHH--HhCCEEE
Confidence 99852 110 0011 12466777777777764 468999999999999999 7999999
Q ss_pred EEEEC--CccCCccccCC
Q 025485 202 ITKIE--TSIECDTFIPA 217 (252)
Q Consensus 202 LT~I~--~~~eGD~fFP~ 217 (252)
||+|| ..++||+|||.
T Consensus 145 lT~ip~~~~~~gd~~F~~ 162 (193)
T 1juv_A 145 VSRIVKRHRVNSTVQLDA 162 (193)
T ss_dssp EEEEEESSCCCCSEEECH
T ss_pred EEEeccccccCCCeecCh
Confidence 99998 45699999993
No 24
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=100.00 E-value=4.6e-33 Score=232.80 Aligned_cols=163 Identities=26% Similarity=0.308 Sum_probs=135.9
Q ss_pred CcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCCCCcEEEECCCCCCC
Q 025485 68 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFN 147 (252)
Q Consensus 68 ~~i~livA~s~dG~IG~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~~r~~iVlSr~~~~~ 147 (252)
||+++++|+|+||+||.+++ ||+.++|+++|++++.. .+++||||+||++++ +|+++++++|+||++...
T Consensus 1 ~kv~l~~A~slDG~Ia~~~~-~W~~~~~~~~~~~~~~~------~dailmGr~T~~~l~---~p~~~~~~~V~s~~~~~~ 70 (168)
T 1cz3_A 1 AKVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTE------IGNVVMGRITFEEIG---RPLPERLNVVLTRRPKTS 70 (168)
T ss_dssp CEEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHH------HTEEEEEHHHHHHHC---SCCTTSEEEEECSSCCCC
T ss_pred CeEEEEEEEcCCCeEECCCC-CCCChHHHHHHHHHHHh------CCEEEEChHHhhcCC---CCCCCCeEEEECCCCCcc
Confidence 57999999999999997666 99999999999999964 699999999999986 799999999999986411
Q ss_pred CCCCCCeEEeC-CHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CCccccCCCC-ccCce
Q 025485 148 IASLENVEICR-SIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTFIPAID-LSLFQ 224 (252)
Q Consensus 148 ~~~~~~v~v~~-si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eGD~fFP~~d-~~~f~ 224 (252)
..+++.++. +++++++.|++. +.++|||+||+++|+++|+++++||+++|++|..+ +|+++||.++ ...|+
T Consensus 71 --~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~lG~g~~~f~~~~~~~~l~ 144 (168)
T 1cz3_A 71 --NNPSLVFFNGSPADVVKFLEGK----GYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLK 144 (168)
T ss_dssp --SCTTEEEECSCHHHHHHHHHHT----TCSEEEEEECHHHHHHHHHTTCCSEEEEEECSEEESSCEESSCCCSCEEEEE
T ss_pred --CCCCEEEEeCCHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhCCCCCEEEEEEeceecCCCCcCCCCCCcccccE
Confidence 134777665 999999999875 67999999999999999999999999999999988 6999999876 35677
Q ss_pred EeeeccCceeCc-ccEEEEEEEEcCCC
Q 025485 225 QRYSSQPLVENN-IQFSFVTYVRVGNT 250 (252)
Q Consensus 225 ~~~~~~~~~e~~-~~~~f~~Y~r~~~~ 250 (252)
+.... .-+ +++.+.+|+|++++
T Consensus 145 l~~~~----~~~~~~~~~l~Y~~~~~~ 167 (168)
T 1cz3_A 145 LLEMR----RLNERGTLFLKYSVEKSH 167 (168)
T ss_dssp EEEEE----ECSSSCCEEEEEEEC---
T ss_pred EeeeE----EeCCCCEEEEEEEEcccC
Confidence 65432 122 26899999998653
No 25
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=100.00 E-value=1.1e-32 Score=232.96 Aligned_cols=162 Identities=16% Similarity=0.248 Sum_probs=137.1
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHHHhCCCCCCCCCEEEEccchhcccc----CCCCCCCCCc
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWNLPS-----DLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS----PLYRPLPGRL 136 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~~~e-----D~~~F~~~T~~~~~~~~~~avIMGRkTyeslp----~~~~pl~~r~ 136 (252)
|||+++++|+|+||+|| ++|++||+.++ +.++|.+.+.. .+++||||+||++++ ...+|+++++
T Consensus 3 M~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~~~~~p~~~~~~~p~~~~~ 76 (178)
T 3jtw_A 3 ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSK------IDTVIMGRTTYEQVTQKLSPEKYVYADRQ 76 (178)
T ss_dssp CCCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHH------EEEEEEEHHHHHHHHHHTCSSSCTTTTSE
T ss_pred ceEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhc------CCEEEEChHHHhhhhhccCCCCCCCCCCC
Confidence 89999999999999998 89999998764 57889888864 699999999999985 1247999999
Q ss_pred EEEECCCCCCCCCCCCCeEEe-CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CCccc
Q 025485 137 NVVLTHSGSFNIASLENVEIC-RSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTF 214 (252)
Q Consensus 137 ~iVlSr~~~~~~~~~~~v~v~-~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eGD~f 214 (252)
+||+||+.... .+++.++ .+++++++.|++. +.++|||+||+++|+++|+++++||+++|++|..+ +|+++
T Consensus 77 ~iV~s~~~~~~---~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~~G~g~~~ 149 (178)
T 3jtw_A 77 TYIVTSHLGED---TDKIKYWKQSPVELVKRIQKE----KGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRL 149 (178)
T ss_dssp EEEECSSCCCC---CSSEEEECSCHHHHHHHHHTS----SCCEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCCSSEES
T ss_pred EEEEeCCCCCC---CCCEEEEcCCHHHHHHHHHhC----CCCEEEEEChHHHHHHHHHCCCceEEEEEEecEEEcCCCcc
Confidence 99999987542 3577665 5999999999986 78999999999999999999999999999999999 89999
Q ss_pred cCCCC-ccCceEeeeccCceeCcccEEEEEEEE
Q 025485 215 IPAID-LSLFQQRYSSQPLVENNIQFSFVTYVR 246 (252)
Q Consensus 215 FP~~d-~~~f~~~~~~~~~~e~~~~~~f~~Y~r 246 (252)
||.++ ...|++...+ .. + +..+.+|+|
T Consensus 150 f~~~~~~~~l~l~~~~--~~-~--~~v~l~Y~r 177 (178)
T 3jtw_A 150 FDRLEEQVPVRLIDVY--QK-N--ELVYSIYQR 177 (178)
T ss_dssp SSCCCSCCCEEEEEEE--EE-T--TEEEEEEEE
T ss_pred cCCCCcCcceEEeEEE--EE-C--CEEEEEEEe
Confidence 99876 3678875432 11 2 578888876
No 26
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.97 E-value=3.2e-30 Score=222.00 Aligned_cols=167 Identities=20% Similarity=0.185 Sum_probs=132.4
Q ss_pred CCCcEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHHHhCCCCCCCCCEEEEccchhccccCC--CCCCCCCcE
Q 025485 66 ARRPYQVVVAATHDMGIG-KDGKLPWNLPS-----DLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL--YRPLPGRLN 137 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG-~~G~LPW~~~e-----D~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~--~~pl~~r~~ 137 (252)
.||++++++|+|+||+|| ++|++||+.++ |..+|.+..+. .+++||||+|||+++.. .+|+ ++++
T Consensus 18 ~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~e~~~~~~~~~P~-~~~~ 90 (197)
T 3ky8_A 18 QGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMER------VDGLVMGRNTLDMVLSFDCDWPY-SKPV 90 (197)
T ss_dssp TTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHH------CSEEEEEHHHHHHHCCTTCCCCC-SSCE
T ss_pred CCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHh------CCEEEEcHHHhHhHhhcCCCCCC-CCcE
Confidence 388999999999999997 89999998764 34445664433 69999999999998753 2566 5689
Q ss_pred EEECCCCCCCCCC-CCCeEE-eCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CCccc
Q 025485 138 VVLTHSGSFNIAS-LENVEI-CRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTF 214 (252)
Q Consensus 138 iVlSr~~~~~~~~-~~~v~v-~~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eGD~f 214 (252)
||+||+....... .+++.+ ..+++++++.|++. +.++|||+||+++ +++|+++++||+++|++|..+ +|+++
T Consensus 91 iVls~~~~~~~~~~~~~~~~v~~~l~~~l~~L~~~----~~~~i~v~GG~~l-~~~l~~glvDel~l~~~P~~lG~G~~~ 165 (197)
T 3ky8_A 91 FVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAK----GFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGVPL 165 (197)
T ss_dssp EEECSSCCSCCTTCTTTEEEECSCHHHHHHHHHHT----TCCEEEEESHHHH-HHHHHTTCCCEEEEEEESEECSSSEES
T ss_pred EEEeCCCCCCccccCCCEEEEeCCHHHHHHHHHhC----CCCeEEEEehHHH-HHHHhCCCCCEEEEEEeeEEECCCCcc
Confidence 9999997532111 136765 48999999999876 6899999999999 999999999999999999998 79999
Q ss_pred cCCCC-ccCceEeeeccCceeCcccEEEEEEEEcC
Q 025485 215 IPAID-LSLFQQRYSSQPLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 215 FP~~d-~~~f~~~~~~~~~~e~~~~~~f~~Y~r~~ 248 (252)
||.++ ...|++...+ .-+.++.+..|+|+.
T Consensus 166 f~~~~~~~~l~l~~~~----~~~~g~v~l~Y~~~~ 196 (197)
T 3ky8_A 166 FGELESSLSFNVIKSE----VVLDSLTQTTYHRKR 196 (197)
T ss_dssp CCCCSSCEEEEEEEEE----EETTTEEEEEEEECC
T ss_pred cCCCCcCcceEEEEEE----EeCCCEEEEEEEEcc
Confidence 99876 4568775432 122368899999863
No 27
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.96 E-value=1e-29 Score=213.91 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=130.6
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCChh---h--HHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCCCC-CCcEEE
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWNLPS---D--LKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLP-GRLNVV 139 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~~~e---D--~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~pl~-~r~~iV 139 (252)
|+++++++|+|+||+|| .+|++||+.++ + +++|.+.+.. .+++||||+||+++... .++| ++++||
T Consensus 3 mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~dailmGr~T~~~~~~~-~~~P~~~~~iV 75 (178)
T 2xw7_A 3 MVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIET------IGVLVMGASTYEWVVEH-GDWSYDQPAWV 75 (178)
T ss_dssp SCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHT------EEEEEEEHHHHHHHHHS-SCCCCSSCEEE
T ss_pred CcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHh------CCEEEECHHHHhhhhcC-CCCCCCCCEEE
Confidence 78999999999999995 79999998652 3 6789888764 79999999999998521 1345 889999
Q ss_pred ECCCCCCCCCCCCCeEEe-CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CCccccCC
Q 025485 140 LTHSGSFNIASLENVEIC-RSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTFIPA 217 (252)
Q Consensus 140 lSr~~~~~~~~~~~v~v~-~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eGD~fFP~ 217 (252)
+||+..... ..+++.++ .+++++++.|++.. +.++|||+||+++|+++|++|++||++++++|..+ +|+++||.
T Consensus 76 ~s~~~~~~~-~~~~~~~~~~dl~~~l~~L~~~~---~~~~v~v~GG~~l~~~~l~~gLvDel~l~~~P~~lG~g~~~f~~ 151 (178)
T 2xw7_A 76 LTHRPEIAA-ESHPMQVFSGDVAELHPELVAAA---GGKDVWVVGGGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVLPM 151 (178)
T ss_dssp ECSCGGGCB-TTBCCEEECSCHHHHHHHHHHHT---TTSEEEEEECHHHHHHHHHTTCCCEEEEEEESEECSSSSBSSCS
T ss_pred EeCCCCCcC-CCCCEEEECCCHHHHHHHHHhcc---CCCcEEEEccHHHHHHHHHCCCCeEEEEEEeceEecCCCcCCCC
Confidence 999831111 23467655 79999999998751 34899999999999999999999999999999998 79999998
Q ss_pred CCccCceEeeeccCceeCcccEEEEEEEEcCC
Q 025485 218 IDLSLFQQRYSSQPLVENNIQFSFVTYVRVGN 249 (252)
Q Consensus 218 ~d~~~f~~~~~~~~~~e~~~~~~f~~Y~r~~~ 249 (252)
.+ .|++.... .. + +..+.+|++++.
T Consensus 152 ~~--~l~l~~~~--~~-~--~~v~l~y~~~~~ 176 (178)
T 2xw7_A 152 RS--EWVLDDCA--RN-G--DFVCARWKRPVL 176 (178)
T ss_dssp CE--ECEEEEEE--EE-T--TEEEEEEECCC-
T ss_pred CC--ceEEEeEE--Ee-C--CeEEEEEEEccc
Confidence 66 67765432 12 2 688889987643
No 28
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.95 E-value=2.2e-28 Score=207.30 Aligned_cols=165 Identities=14% Similarity=0.179 Sum_probs=129.5
Q ss_pred CCCCcEEEEEEEeCCCeee-cCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCCCCC----------CC
Q 025485 65 RARRPYQVVVAATHDMGIG-KDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP----------LP 133 (252)
Q Consensus 65 ~~~~~i~livA~s~dG~IG-~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~p----------l~ 133 (252)
..|+++++++|+|+||+|| .+|++||++++|.++|.+.+.. .+++||||+||++++.. +| +.
T Consensus 6 ~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~------~dail~Gr~T~~~~~~~-~p~~~Pd~~~~~~~ 78 (189)
T 2gd9_A 6 LKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQ------IDTILYGRKSFDLWGQY-IPKNEDPDTEKELW 78 (189)
T ss_dssp CCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHT------EEEEEEEHHHHHHHTTC-----------CCHH
T ss_pred CCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhc------CCEEEEChHHHhhhhhc-CCCCCCccccchhH
Confidence 4488999999999999997 5999999976655578887654 79999999999998631 22 21
Q ss_pred ----CCcEEEECCCCCCCCCCCCCeEEe-CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCc
Q 025485 134 ----GRLNVVLTHSGSFNIASLENVEIC-RSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETS 208 (252)
Q Consensus 134 ----~r~~iVlSr~~~~~~~~~~~v~v~-~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~ 208 (252)
+++++|+|++.... . .++.+. .+++++++.|++. +.++|||.||+++++++|+++++||++++++|..
T Consensus 79 ~~~~~~~~iV~t~~~~~~--~-~~~~~~~~~l~~~l~~L~~~----~~~~i~v~GG~~l~~~~l~~glvDel~l~~~P~~ 151 (189)
T 2gd9_A 79 KLVHSKKKYVFSRTQNEI--D-NQAIFINDNILEEVNKLKKN----PGKDIWLYGGASLITTFINLGLVDEFRLSIHPVV 151 (189)
T ss_dssp HHHHHSEEEEECCEEETT--T-TEEECCHHHHHHHHHHHHHS----CCSEEEEEECHHHHHHHHHTTCCCEEEEEECSEE
T ss_pred HHhCCCCEEEEeCCCCCC--C-CCeEEEcCCHHHHHHHHHhC----CCCeEEEEChHHHHHHHHHCCCceEEEEEEeCEE
Confidence 78999999985321 1 256654 5899999999876 6799999999999999999999999999999999
Q ss_pred c-CCccccCCCC-ccCceEeeeccCceeCcccEEEEEEEEc
Q 025485 209 I-ECDTFIPAID-LSLFQQRYSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 209 ~-eGD~fFP~~d-~~~f~~~~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
+ +|+++||.++ ...|++.... .-+....+..|.++
T Consensus 152 lG~g~~~f~~~~~~~~l~l~~~~----~~~~~~~~l~y~~~ 188 (189)
T 2gd9_A 152 LGEGKPLFIDVKQRINLKMVNTR----TFSSGVVQIVYHWN 188 (189)
T ss_dssp CSSSEESSCSCCSCEECEEEEEE----ECTTSCEEEEEEC-
T ss_pred eCCCCccCCCCCCCcceEEEEEE----EcCCCEEEEEEEeC
Confidence 8 7999999864 4567765432 12225777788764
No 29
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.93 E-value=9.7e-26 Score=198.80 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=122.3
Q ss_pred ccccCCCCcEEEEEEEeCCCeee-c--CCCCC-------CCChh-hH--------------------------HHHHHHH
Q 025485 61 SMHLRARRPYQVVVAATHDMGIG-K--DGKLP-------WNLPS-DL--------------------------KFFKQLT 103 (252)
Q Consensus 61 ~~~~~~~~~i~livA~s~dG~IG-~--~G~LP-------W~~~e-D~--------------------------~~F~~~T 103 (252)
|+--..|+|+++.+++|+||+|+ . ++.+- |..+. ++ ++..+..
T Consensus 14 ~~~~~~m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~ 93 (231)
T 3kgy_A 14 NLYFQGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTF 93 (231)
T ss_dssp CTTGGGSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHH
T ss_pred chhhcccceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHH
Confidence 33344599999999999999995 3 22232 43221 11 1222234
Q ss_pred hCCCCCCCCCEEEEccchhccccCC---CCCCCCCcEEEECCCCCCCCCCCCCe---EEeCCHHHHHHHhcCCCCCCCCC
Q 025485 104 MSTSDPGKRNAVVMGRKTWESISPL---YRPLPGRLNVVLTHSGSFNIASLENV---EICRSIHLALELLAEPPYCSSIE 177 (252)
Q Consensus 104 ~~~~~~~~~~avIMGRkTyeslp~~---~~pl~~r~~iVlSr~~~~~~~~~~~v---~v~~si~eal~~l~~~~~~~~~~ 177 (252)
.+ .+++||||||||+++.. .+|+ +|+|||+||++..+....+++ .+.++++++++.|++. .+.+
T Consensus 94 ~~------i~~vIMGRkTye~~~~~wp~~~p~-~r~~iVlS~~~~~~~~~~~~~~v~~v~~~l~eal~~l~~~---~~~~ 163 (231)
T 3kgy_A 94 ER------TGAHIMGKRMFEGGERGWPEEAPF-HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREA---AGER 163 (231)
T ss_dssp HT------EEEEEEEHHHHHHHHHHSCSSCSC-CSEEEEECSSCCCCEEETTTEEEEEECSCHHHHHHHHHHH---HTTS
T ss_pred hc------CCEEEEChhhhhhhhhhcCCcCcC-CCcEEEEcCCCCCccccCCCcEEEEEcCCHHHHHHHHHhh---cCCC
Confidence 43 69999999999998621 1233 899999999974321111233 2558999999999752 1578
Q ss_pred cEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-CCccccCCCCc--cCceEeeeccCceeCcccEEEEEEEEc
Q 025485 178 KVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTFIPAIDL--SLFQQRYSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 178 ~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-eGD~fFP~~d~--~~f~~~~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
+|||+||+++|+++|++++|||++||++|..+ +|+++||.++. ..|++... ...+ +++..+|+|.
T Consensus 164 ~I~V~GG~~l~~~~L~~gLvDel~lti~Pv~lG~G~~lF~~~~~~~~~l~l~~~---~~~~--Gvv~l~Y~r~ 231 (231)
T 3kgy_A 164 DIRISGGANVIQQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRV---LASP--TATHLRYVRL 231 (231)
T ss_dssp EEEEEECHHHHHHHHHTTCCSEEEEEEESCCCSSSEESSCSCCSSCCCEEEEEE---EECS--SCEEEEEEEC
T ss_pred cEEEeCCHHHHHHHHhCCCCCEEEEEEeceeccCCCccCCCCCCccceeEEEEE---EcCC--CEEEEEEEeC
Confidence 99999999999999999999999999999998 89999999874 35665321 1233 6888899873
No 30
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.78 E-value=1.6e-18 Score=162.14 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=111.3
Q ss_pred CCCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccC----C-----CCC---
Q 025485 66 ARRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP----L-----YRP--- 131 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG-~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~----~-----~~p--- 131 (252)
.++++++.+|+|+||+|+ .+|+.+|.. +++.++|.++... .+++||||+||+.... + ..|
T Consensus 156 ~rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~------~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rv 229 (373)
T 2b3z_A 156 GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT------HQSILVGVGTVKADNPSLTCRLPNVTKQPVRV 229 (373)
T ss_dssp SSCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH------SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEE
T ss_pred cchhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhhhhcCCcccccCcCCCCCCeEE
Confidence 478899999999999997 799999974 6778888886654 6999999999998521 0 011
Q ss_pred -------CC---------CCcEEEECCCCCCCC----CCCCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 025485 132 -------LP---------GRLNVVLTHSGSFNI----ASLENVEIC------RSIHLALELLAEPPYCSSIEKVFVIGGG 185 (252)
Q Consensus 132 -------l~---------~r~~iVlSr~~~~~~----~~~~~v~v~------~si~eal~~l~~~~~~~~~~~I~ViGG~ 185 (252)
++ +++++|+|++..... ..+.++.+. .++.++++.|++. +.++|||.||+
T Consensus 230 Vld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 305 (373)
T 2b3z_A 230 ILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEE----GIMSVYVEGGS 305 (373)
T ss_dssp EECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHT----TCCEEEEEECH
T ss_pred EEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHC----CCCEEEEEEhH
Confidence 11 577888887642100 012355544 4899999999986 78999999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECCccC---CccccCCC
Q 025485 186 QILREALNAPECDAIHITKIETSIE---CDTFIPAI 218 (252)
Q Consensus 186 ~Iy~~~L~~~liDel~LT~I~~~~e---GD~fFP~~ 218 (252)
+++++||+++++||+++++.|..+. |-++|+..
T Consensus 306 ~l~~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~ 341 (373)
T 2b3z_A 306 AVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGE 341 (373)
T ss_dssp HHHHHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSS
T ss_pred HHHHHHHhCCCceEEEEEEcceEecCCCCcCccccc
Confidence 9999999999999999999999983 67888653
No 31
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=99.75 E-value=4.4e-17 Score=140.95 Aligned_cols=166 Identities=11% Similarity=0.115 Sum_probs=115.1
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccC---------CCCCC---
Q 025485 67 RRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP---------LYRPL--- 132 (252)
Q Consensus 67 ~~~i~livA~s~dG~IG-~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~---------~~~pl--- 132 (252)
++++++.+|+|+||+|+ .+|.. |.. +++.+++.+.... .+++||||+||+.... ..+|+
T Consensus 3 rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~------~dailvG~~T~~~d~p~L~~~r~~~~~~P~~vV 75 (219)
T 2azn_A 3 KPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRAN------VDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIV 75 (219)
T ss_dssp CCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHT------SSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEEE
T ss_pred CCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHH------CCEEEEChhehhhcCCcCccccccCCCCCEEEE
Confidence 67899999999999995 68888 964 4556667666654 7999999999996511 11232
Q ss_pred ---------------CCCcEEEECCCCCCCCC----C---CCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEEeC
Q 025485 133 ---------------PGRLNVVLTHSGSFNIA----S---LENVEIC------RSIHLALELLAEPPYCSSIEKVFVIGG 184 (252)
Q Consensus 133 ---------------~~r~~iVlSr~~~~~~~----~---~~~v~v~------~si~eal~~l~~~~~~~~~~~I~ViGG 184 (252)
.+.+.+|+|++...... . ..++.+. .++.++++.|++. +.++|+|.||
T Consensus 76 ~d~~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~ilveGG 151 (219)
T 2azn_A 76 VDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDK----GIKSILLEGG 151 (219)
T ss_dssp ECTTCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHT----TCCEEEEEEC
T ss_pred ECCCCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHc----CCCEEEEeeC
Confidence 13455666655321000 0 1145433 4899999999886 7899999999
Q ss_pred HHHHHHHhcCCCcCEEEEEEECCccC---CccccCCCC------ccCceEeeeccCceeCcccEEEEEEEEcC
Q 025485 185 GQILREALNAPECDAIHITKIETSIE---CDTFIPAID------LSLFQQRYSSQPLVENNIQFSFVTYVRVG 248 (252)
Q Consensus 185 ~~Iy~~~L~~~liDel~LT~I~~~~e---GD~fFP~~d------~~~f~~~~~~~~~~e~~~~~~f~~Y~r~~ 248 (252)
+++.++||++|++||+++++.|..+. |-++|+... ...|++.... ...+ -.+..|.++|
T Consensus 152 ~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~--~~~~---~v~l~y~~~~ 219 (219)
T 2azn_A 152 GTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFY--RLGE---GIVLEFKVKK 219 (219)
T ss_dssp HHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEE--EETT---EEEEEEEECC
T ss_pred HHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEE--EECC---eEEEEEEECC
Confidence 99999999999999999999999884 457887532 2345554322 1223 2567787753
No 32
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.62 E-value=2.4e-14 Score=133.18 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=113.8
Q ss_pred CCCcEEEEEEEeCCCeee-cCCCCCCCChhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCC---CCCC-CCCcEEEE
Q 025485 66 ARRPYQVVVAATHDMGIG-KDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL---YRPL-PGRLNVVL 140 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG-~~G~LPW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~---~~pl-~~r~~iVl 140 (252)
.++.+++.+|+|+||+|+ .+|+..|..+++.+++.++... .+++||||+||+..... ..+. ++...||+
T Consensus 158 ~rP~V~lk~A~SLDG~IA~~~G~s~Wit~~~~~~~~~lr~~------~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvVl 231 (360)
T 2hxv_A 158 KRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNI------YSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVIL 231 (360)
T ss_dssp SSCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHHH------SSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEEE
T ss_pred chhhheeehhhccCCcccCCCCCcccCCHHHHHHHHHHHHH------CCEEEECccchhhhCCcccccCCCCCCCeEEEE
Confidence 367799999999999996 6889999655556666666554 69999999999864210 1122 23345999
Q ss_pred CCCCCCCCC-----CC-CCeE-Ee-----------------CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhcCCC
Q 025485 141 THSGSFNIA-----SL-ENVE-IC-----------------RSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPE 196 (252)
Q Consensus 141 Sr~~~~~~~-----~~-~~v~-v~-----------------~si~eal~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~l 196 (252)
+++...+.. .. .... ++ .++.++++.|++. +.++|||.||+++.++||+++
T Consensus 232 d~~~~~p~~~~~~~~~~~~~iv~t~~~~~~~~~~v~v~~~~~dl~~~l~~L~~~----g~~~vlVeGG~~L~~sfL~ag- 306 (360)
T 2hxv_A 232 DRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYER----DIDSVLVEGGSKVFSEFLDHA- 306 (360)
T ss_dssp CTTCTTTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHT----TCCEEEECCCHHHHHHHGGGC-
T ss_pred CCCCCCChhHhHHhcCCCcEEEEECCCchhhccCcEEEcCCCCHHHHHHHHHhC----CCCEEEEEecHHHHHHHHHCC-
Confidence 987543211 00 1122 22 3799999999886 789999999999999999999
Q ss_pred cCEEEEEEECCcc-CCccccCC----CC-ccCceEeeeccCceeCcccEEEEEEEEc
Q 025485 197 CDAIHITKIETSI-ECDTFIPA----ID-LSLFQQRYSSQPLVENNIQFSFVTYVRV 247 (252)
Q Consensus 197 iDel~LT~I~~~~-eGD~fFP~----~d-~~~f~~~~~~~~~~e~~~~~~f~~Y~r~ 247 (252)
||+++++.|..+ +|-++|.. ++ ...|++.... ...++ ....|.++
T Consensus 307 -DEl~l~iaP~llG~G~~lf~~~~~~~~~~~~L~l~~~~--~~g~d---v~l~y~~~ 357 (360)
T 2hxv_A 307 -DVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVE--FSDSE---FLVEMRPC 357 (360)
T ss_dssp -SEEEEEEESCCCSSSEETTTTCCCCTTSCCCEEEEEEE--EETTE---EEEEEEEC
T ss_pred -CEEEEEEcceEEcCCCcccccccccccccccceEeEEE--EECCc---EEEEEEeC
Confidence 999999999988 55577743 22 2345554322 22332 46677664
No 33
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.61 E-value=1e-14 Score=137.63 Aligned_cols=141 Identities=14% Similarity=0.131 Sum_probs=103.3
Q ss_pred CCCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccC----C-----------
Q 025485 66 ARRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP----L----------- 128 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG-~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~----~----------- 128 (252)
.|+.+++.+|+|+||.|+ .+|+..|.. +++.+++.++... .+++||||+||+.... .
T Consensus 172 ~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~------~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~~ 245 (402)
T 2g6v_A 172 GFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ------SHAILTSSATVLADDPALTVRWSELDEQTQAL 245 (402)
T ss_dssp SSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHH------CSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSS
T ss_pred ccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHh------CCEEEECHHHHhhcCccccccccccccccccc
Confidence 478899999999999995 788999974 4455566555554 6999999999986410 0
Q ss_pred ------CCCC-----------------C-CCcEEEECCCCCCCCCCCCCeEEe--C------CHHHHHHHhcCCCCCCCC
Q 025485 129 ------YRPL-----------------P-GRLNVVLTHSGSFNIASLENVEIC--R------SIHLALELLAEPPYCSSI 176 (252)
Q Consensus 129 ------~~pl-----------------~-~r~~iVlSr~~~~~~~~~~~v~v~--~------si~eal~~l~~~~~~~~~ 176 (252)
..|+ . +.+.+|+|++...... ..++.+. + ++.++++.|++. +.
T Consensus 246 ~~~~~~~~P~rvVld~~~~lp~~a~~~~~~~~~iV~t~~~~~~~l-~~gv~vi~~~~~~g~vdl~~~l~~L~~~----g~ 320 (402)
T 2g6v_A 246 YPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREW-PETVRTLLIPEHKGHLDLVVLMMQLGKQ----QI 320 (402)
T ss_dssp CCGGGCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCSCC-CTTEEEEECCEETTEECHHHHHHHHHHT----TC
T ss_pred ccccccCCCeEEEECCCCCCChhhHhhcCCCCEEEEECCcchhhh-cCCCEEEEecCCCCCCCHHHHHHHHHhC----CC
Confidence 0121 1 4567777765421110 1355443 3 899999999886 78
Q ss_pred CcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-C-CccccCC
Q 025485 177 EKVFVIGGGQILREALNAPECDAIHITKIETSI-E-CDTFIPA 217 (252)
Q Consensus 177 ~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-e-GD~fFP~ 217 (252)
++|+|.||+++..+||++|++||+++++.|..+ + |.++|+.
T Consensus 321 ~~vlVEGG~~L~~sfL~agLVDEl~l~iaP~llG~~G~~lf~~ 363 (402)
T 2g6v_A 321 NSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTL 363 (402)
T ss_dssp CEEEECCCHHHHHHHHHHTCCCEEEEEECSCCCSSSSCBSCCC
T ss_pred CEEEEEEhHHHHHHHHHCCCccEEEEEEccEEeCCCCcCCCCC
Confidence 999999999999999999999999999999988 3 7788865
No 34
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=99.59 E-value=1.1e-13 Score=123.80 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=114.4
Q ss_pred CCCcEEEEEEEeCCCeeecCCCCCCCC-hhhHHHHHHHHhCCCCCCCCCEEEEccchhccccCC--C----C--------
Q 025485 66 ARRPYQVVVAATHDMGIGKDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL--Y----R-------- 130 (252)
Q Consensus 66 ~~~~i~livA~s~dG~IG~~G~LPW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~--~----~-------- 130 (252)
.++++++.+|+|+||+.+.+|...|.. +++.+++.++... .+++||||+||+.-... . +
T Consensus 32 ~rP~V~lk~a~SLDG~a~~~g~s~wit~~~~~~~~~~lr~~------~DaIlvG~~T~~~d~p~l~~~~~r~~~~r~~~g 105 (270)
T 2p4g_A 32 NEPECRAIAITSINGSATLSGVSGPMGDQTDADLLIQLRGW------ADAIVVGAETARKENYGPVVLPHGIKNQRQKLG 105 (270)
T ss_dssp HCCEEEEEEEEETTSBSCBTTBSGGGCCHHHHHHHHHHHHH------CSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHTT
T ss_pred CCCEEEEEEEECCCCCcCCCCCccCcCCHHHHHHHHHHHHH------CCEEEEChHHhhhhCCccccccccccccccccC
Confidence 378899999999999944688888964 4555666555444 69999999999743110 0 0
Q ss_pred CCCCCcEEEECCCCCCCCC------CCC-----------------------------CeEE--e----CCHHHHHHHhcC
Q 025485 131 PLPGRLNVVLTHSGSFNIA------SLE-----------------------------NVEI--C----RSIHLALELLAE 169 (252)
Q Consensus 131 pl~~r~~iVlSr~~~~~~~------~~~-----------------------------~v~v--~----~si~eal~~l~~ 169 (252)
..+..+.+|++++...+.. ..+ ++.+ + .++.++++.|++
T Consensus 106 ~~~~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~ 185 (270)
T 2p4g_A 106 RCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALHA 185 (270)
T ss_dssp CCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHT
T ss_pred CCCCCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 0012345556554321100 000 2221 1 258889999987
Q ss_pred CCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECCcc-C-CccccCC--CC-ccCceEeeeccCceeCcccEEEEEE
Q 025485 170 PPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-E-CDTFIPA--ID-LSLFQQRYSSQPLVENNIQFSFVTY 244 (252)
Q Consensus 170 ~~~~~~~~~I~ViGG~~Iy~~~L~~~liDel~LT~I~~~~-e-GD~fFP~--~d-~~~f~~~~~~~~~~e~~~~~~f~~Y 244 (252)
. +.++|+|-||+.+..+||++|++||+++++.|..+ + |-++|+. .+ ...|++.... ... --+..+..|
T Consensus 186 ~----g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~~~~~~~~l~l~~~~--~~~-~~g~v~l~Y 258 (270)
T 2p4g_A 186 R----RLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEML--SSS-PNGLIFSRY 258 (270)
T ss_dssp T----TCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEE--EEC-TTCCEEEEE
T ss_pred C----CCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCcCcCcCcceEEEEEE--Eec-cCCEEEEEE
Confidence 6 78999999999999999999999999999999988 3 6778866 22 3456665331 111 025788899
Q ss_pred EEcCC
Q 025485 245 VRVGN 249 (252)
Q Consensus 245 ~r~~~ 249 (252)
++++.
T Consensus 259 ~~~~~ 263 (270)
T 2p4g_A 259 KVIRD 263 (270)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 88643
No 35
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=37.95 E-value=7 Score=34.85 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=33.0
Q ss_pred CCCcEEEEeC--HHHHHHHhcCCCcCEEEEEEECCcc--CCccccCC
Q 025485 175 SIEKVFVIGG--GQILREALNAPECDAIHITKIETSI--ECDTFIPA 217 (252)
Q Consensus 175 ~~~~I~ViGG--~~Iy~~~L~~~liDel~LT~I~~~~--eGD~fFP~ 217 (252)
..++|.|+|| |.+.+++++++-+.++.+-.|+..+ -+..+||.
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~ 129 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN 129 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc
Confidence 5689999998 6789999998777787776666544 36678875
No 36
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=27.16 E-value=32 Score=31.75 Aligned_cols=44 Identities=20% Similarity=0.502 Sum_probs=29.5
Q ss_pred CCCcEEEEeC--HHHHHHHhcCCCcCEEEEEEECCcc--CCccccCCCC
Q 025485 175 SIEKVFVIGG--GQILREALNAPECDAIHITKIETSI--ECDTFIPAID 219 (252)
Q Consensus 175 ~~~~I~ViGG--~~Iy~~~L~~~liDel~LT~I~~~~--eGD~fFP~~d 219 (252)
+.++|.|+|| |.+.+++++++- .++.+-.|+..+ -+..+||...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~ 252 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTC 252 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC--
T ss_pred CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhh
Confidence 4689999988 578899999874 665554444433 3667888643
Done!