BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025486
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XAB8|THF1_SOLTU Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum
GN=THF1 PE=2 SV=1
Length = 293
Score = 309 bits (791), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/231 (66%), Positives = 189/231 (81%), Gaps = 5/231 (2%)
Query: 1 MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
MA++TSV+F++I Q S +RK +VSS+RS+ + FRFR++ V R+S+S+SR ++
Sbjct: 1 MAAVTSVSFSAITQ-SAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVV 55
Query: 61 QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
C S++ PTVA+TK+ FL YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFAL
Sbjct: 56 HCTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFAL 115
Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
GFVTVYD+LMEGYPSEEDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F
Sbjct: 116 GFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFS 175
Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231
SKEGE+E + KDIA+RA K F YSR FAVGLFRLLELAN T+PT+LEK+
Sbjct: 176 SKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKL 226
>sp|Q84PB7|THF1_ORYSJ Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp.
japonica GN=THF1 PE=2 SV=1
Length = 287
Score = 306 bits (784), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 141/176 (80%), Positives = 161/176 (91%)
Query: 56 SRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYD 115
SR +++C++TA DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD
Sbjct: 44 SRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYD 103
Query: 116 PVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASS 175
VFALGFVTVYD+LMEGYPS EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q +S
Sbjct: 104 AVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNS 163
Query: 176 LVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231
LVEF SK+GE+E +LKDI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+K+
Sbjct: 164 LVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKL 219
>sp|Q9SKT0|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis
thaliana GN=THF1 PE=1 SV=1
Length = 300
Score = 299 bits (765), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/234 (63%), Positives = 182/234 (77%), Gaps = 18/234 (7%)
Query: 3 SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFR----ASSSSSRM 58
+++S++F ++GQ+ +SNF R S C +F S S+S+
Sbjct: 5 AISSLSFPALGQSD------------KISNFASSRPLASAIRICTKFSRLSLNSRSTSKS 52
Query: 59 IIQCMSTAT-DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPV 117
+I CMS T DVPP V+ETK FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPV
Sbjct: 53 LIHCMSNVTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPV 111
Query: 118 FALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV 177
FALGFVTVYD+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV
Sbjct: 112 FALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLV 171
Query: 178 EFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231
+F SKEG++E +LKDIA RA K FSYSRFFAVGLFRLLELA+AT+PTVL+K+
Sbjct: 172 DFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKL 225
>sp|Q8YZ41|THF1_NOSS1 Protein thf1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thf1
PE=3 SV=1
Length = 233
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 15/187 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR ME
Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
GY E D+E+IF A A++++P++YR DA++L+ A+ + LV + S ++ +
Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDAD 125
Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVL--EKVRSTFFDNIGTSI 243
++ L+ IA NF YSR FA+GLF LLE +N P ++ EK R+ +I +
Sbjct: 126 LQAQLQAIA----NNSNFKYSRLFAIGLFTLLEQSN---PDLVKDEKQRTEALKSIAAGL 178
Query: 244 IHGEDPF 250
+D F
Sbjct: 179 HLSDDKF 185
>sp|Q116P5|THF1_TRIEI Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1
PE=3 SV=1
Length = 239
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F + RPI SIYN V++EL+V+ HL+ Y Y+P +ALG VT +DR M+
Sbjct: 6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP--SKEGEVEGL 189
GY +ED+ +IF A I +EDP +YR DA+ LE+ A +AS ++ + SK +
Sbjct: 66 GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELAN 221
L+D S F YSR FA+GLF LLE+ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVD 157
>sp|B0C3M8|THF1_ACAM1 Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1
PE=3 SV=1
Length = 247
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F ++ RP+ S+Y V++EL+V+ HL+R ++YDP+FALG T +DR M+
Sbjct: 6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMD 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EV 186
GY E D++AIF A A + DP Q + D Q+L E A+ ++A ++++ ++ E+
Sbjct: 66 GYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDEL 125
Query: 187 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVRSTFFDNIGT 241
+ L++IA+ F YSR FA+GLF LLEL+ T E+ + F NI T
Sbjct: 126 QWQLRNIAQNPK----FKYSRLFAIGLFTLLELSEGN-ITQDEESLAEFLPNICT 175
>sp|Q3M4B2|THF1_ANAVT Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=thf1 PE=3 SV=1
Length = 233
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 15/185 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+
Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
GY E D+E+IF A A++++P++YR DA++L+ A+ + LV + S ++ +
Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDAD 125
Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVL--EKVRSTFFDNIGTSI 243
++ L+ IA NF YSR FA+GLF LLE +N P ++ EK R+ I +
Sbjct: 126 LQAQLQAIA----SNPNFKYSRLFAIGLFTLLEQSN---PDLVKDEKQRTEALKTIAAGL 178
Query: 244 IHGED 248
+D
Sbjct: 179 HLSDD 183
>sp|B2J353|THF1_NOSP7 Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=thf1 PE=3 SV=1
Length = 235
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 96/153 (62%), Gaps = 10/153 (6%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+
Sbjct: 6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGE 185
GY E D+E+IF A A+++DP+ YR DA++L+ A+G L+ + ++ +
Sbjct: 66 GYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDAD 125
Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLE 218
++ L+ IA NF Y+R FA+G+F LLE
Sbjct: 126 LQAQLQAIA----NNPNFKYNRLFAIGVFSLLE 154
>sp|B8HQ62|THF1_CYAP4 Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=thf1 PE=3 SV=1
Length = 236
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 70 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 129
P TV++TK F + RPI SIY V++EL+V+ HL+R +T+ YDPVFALG VT ++R
Sbjct: 4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERF 63
Query: 130 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189
M+GY D+ +IF A A + DP+Q + DAQ+L RGQ+ SL+++ S + G
Sbjct: 64 MQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGD 123
Query: 190 LKDIAERA-SGKGNFSYSRFFAVGLFRLLELA 220
+ RA + F YSR FAVGLF LLE A
Sbjct: 124 EQQNRLRAIASNPTFKYSRLFAVGLFTLLEQA 155
>sp|Q5N664|THF1_SYNP6 Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=thf1 PE=3 SV=2
Length = 254
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 71 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
PTV+++K F Y RPI +Y V++EL+V+ HL+ ++ YDP+FALG VT +D M
Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64
Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 187
Y E +F A A++++PEQYR DA + E RG + ++ ++ ++ G
Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124
Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELA 220
L++ + +G+ F YSR FA+GLF LLE A
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETA 157
>sp|Q31MY4|THF1_SYNE7 Protein thf1 OS=Synechococcus elongatus (strain PCC 7942) GN=thf1
PE=3 SV=2
Length = 254
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 71 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
PTV+++K F Y RPI +Y V++EL+V+ HL+ ++ YDP+FALG VT +D M
Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64
Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 187
Y E +F A A++++PEQYR DA + E RG + ++ ++ ++ G
Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124
Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELA 220
L++ + +G+ F YSR FA+GLF LLE A
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETA 157
>sp|B7K277|THF1_CYAP8 Protein thf1 OS=Cyanothece sp. (strain PCC 8801) GN=thf1 PE=3 SV=1
Length = 235
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK +F + RPI SIY ++EL+V+ HL+ ++YDP++ALG V + + M+
Sbjct: 6 TVSDTKRDFYNHHTRPINSIYRRFIEELLVEMHLLCVNIDFRYDPIYALGVVASFQQFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEV-EG 188
GY EED+ +IF A A+ D E+YR +AQ L +G + S L+ ++ GE EG
Sbjct: 66 GYRPEEDKNSIFSALCQAVGGDGEKYRHEAQTLLNQVKGMSVSDLIAMGNSARTGEPGEG 125
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVRSTF 235
+L + + + F YSR FA+GL+ ++ +A +K TF
Sbjct: 126 MLYNTLQAIAKNPQFKYSRLFAIGLYTMVMEIDADLLKEQDKRNETF 172
>sp|B7KI38|THF1_CYAP7 Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1
Length = 226
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+++K +F + RPI S+Y V++EL+V+ HL+ +QYDPV+ALG VT + R M+
Sbjct: 6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV-------EFPSKEG 184
GY + D+E+IF A ++ DP+QYR DA+++ E A+ +A L+ + S E
Sbjct: 66 GYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGEN 125
Query: 185 EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLE 229
++ L IA + Y+R FA+G++ +L T+P +L+
Sbjct: 126 QILQTLIGIA----NAPKYKYTRLFAIGIYTILA---ETDPEMLK 163
>sp|B1XHY6|THF1_SYNP2 Protein thf1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=thf1 PE=3 SV=1
Length = 254
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 7/177 (3%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK +F + RPI SI+ V++EL+V+ HL+ ++YDP +ALG VT ++R M+
Sbjct: 6 TVSDTKRDFYTHHTRPINSIFRRVVEELLVEMHLLSVNADFRYDPFYALGVVTSFERFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL-- 189
GY E D+ +IFQ+ A+ D +Y+ DA L E A+ + + L+E ++ EG
Sbjct: 66 GYRPEADKVSIFQSMCQAIGGDANRYKEDAMALVELAKRCSGTQLIECFRQDVPPEGAQE 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVRSTFFDNIGTSIIHG 246
L + E + +F YSR FA+G++ L +EP +LE D + T++ G
Sbjct: 126 LWEKIEAIAKNDHFKYSRLFAIGVYTFL---GESEPQLLEDTEKR--DEMLTTVTAG 177
>sp|B1WNF0|THF1_CYAA5 Protein thf1 OS=Cyanothece sp. (strain ATCC 51142) GN=thf1 PE=3
SV=1
Length = 242
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F + RPI SIY ++EL+V+ HL+ ++YDP++ALG VT ++R M+
Sbjct: 6 TVSDTKRKFYGYHTRPINSIYRRFVEELLVEMHLLSVNVDFKYDPIYALGVVTSFERFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E D+ +IF A A+ + EQY +A+ L A+G + + E +EG +G+L
Sbjct: 66 GYSPESDKTSIFNALCQAVDGNSEQYHQEAEALINEAKGLSITEFKEKLGQEGG-DGILW 124
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLL 217
+ F YSR F VGL+ LL
Sbjct: 125 GTCGAIAQNPKFKYSRLFGVGLYTLL 150
>sp|P0C1D1|THF1_SYNJB Protein thf1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=thf1
PE=3 SV=1
Length = 239
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 3/174 (1%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T++ TK F Y RPI ++Y V++EL+V+ HL T+ YDP FALG VT+YD LME
Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE--GL 189
Y E REAIF A AL PE R +A+ L E ++ + E E G
Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMGSGDPRQRLDLLCLKPEAEDVGG 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVRSTFFDNIGTSI 243
LK I ER + + ++YSR AVGL+ E+ + E+ F +N+ + +
Sbjct: 126 LKAILERMT-QPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKL 178
>sp|Q7NKS7|THF1_GLOVI Protein thf1 OS=Gloeobacter violaceus (strain PCC 7421) GN=thf1
PE=3 SV=1
Length = 228
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+++K F Y RP+ SIY V+ EL+V+ HL+ + +++DP+FA G +T Y LME
Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV-EGLL 190
GY E R+AI +A TAL+ EQ DA + A A ++E + + E +G L
Sbjct: 66 GYTPVEQRDAILRALCTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRL 125
Query: 191 KDIAERASGKGN---FSYSRFFAVGLFRLLELAN 221
K + + +G N F YSR F++GL +LE A
Sbjct: 126 KAMGDTLAGIANAERFKYSRLFSLGLANILEQAG 159
>sp|Q2JSQ3|THF1_SYNJA Protein thf1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=thf1 PE=3
SV=1
Length = 239
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T++ TK F Y RPI + Y V++EL+V+ HL + YDP FALG VT+YD LME
Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARG----QTASSLVEFPSKEGEVE 187
Y E REAIF A AL PE R +A+ L E R Q + L P E E
Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKP--EAEDV 123
Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT----EPTVLEKVRSTFFDNIGT 241
G LK I +R + + ++YSR AVGL+ E A AT EP E+ R D IG
Sbjct: 124 GGLKAILQRMT-QPPYAYSRVLAVGLYTAYE-AVATSLYKEPE--ERTRHFLEDVIGN 177
>sp|P73956|THF1_SYNY3 Protein thf1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=thf1 PE=3 SV=1
Length = 240
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++ K F Y RPI SIY ++EL+V+ HL+ + YDP+FALG VT ++ M+
Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV-EFPSKEGEVEGLL 190
GY E AIF A + ++P+Q R DA+ + A + V S++ + LL
Sbjct: 66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLL 125
Query: 191 KDIAERASGKGNFSYSRFFAVGLFRLL 217
+ + F YSR FA+GL+ LL
Sbjct: 126 LNTLTGIHQRHKFKYSRLFAIGLYTLL 152
>sp|Q8DJT8|THF1_THEEB Protein thf1 OS=Thermosynechococcus elongatus (strain BP-1) GN=thf1
PE=3 SV=1
Length = 222
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
Query: 70 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 129
P TV++TK F + RPI SIY ++EL+V+ HL+R ++Y P+FALG VT +D+
Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63
Query: 130 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189
MEGY E DR+ IF A A + +P+Q + DA +++ + L E S G+
Sbjct: 64 MEGYQPEGDRDRIFHALCVAEEMNPQQLKEDAASWQQYQGRPLSQILDELNS--GQPSAP 121
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLE 218
L + +GK YSR AVGL+ L+
Sbjct: 122 LNSLNH--TGK----YSRLHAVGLYAFLQ 144
>sp|Q7V7R3|THF1_PROMM Protein thf1 OS=Prochlorococcus marinus (strain MIT 9313) GN=thf1
PE=3 SV=1
Length = 243
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + IPS+Y EL+V+ HL+ +++ + D +FA+G V+D
Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE--VEGL 189
GY E + +F A + DP R AQ+ E RG + + ++G+ E L
Sbjct: 66 GYRPEAHVKTLFDALCRSCGFDPNALRKQAQQTLESVRGHDLEEVQGWIQQQGKGAPEAL 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATE---PTVLEKVRSTFFDNIGTS 242
K + A G F YSR AVGL LL A E P L ++ +++G S
Sbjct: 126 AKALRNTA-GSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFS 180
>sp|Q3AY05|THF1_SYNS9 Protein thf1 OS=Synechococcus sp. (strain CC9902) GN=thf1 PE=3 SV=1
Length = 215
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + + I +Y + EL+V+ HL+ ++ +++ P+FA+G TV+D
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY EE + A ++ D +R ++++ + A+ ++ V+ +
Sbjct: 66 GYRPEEHITGLLDALCSSNGYDANTFRKESKRCIDAAKTES-------------VDAMDS 112
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLLELA--NATEP 225
+A + G+G+ YSR A+G+ RL E A +A +P
Sbjct: 113 HLAGQKLGEGSH-YSRLMAIGVLRLFEEAKGDADQP 147
>sp|Q3AJN7|THF1_SYNSC Protein thf1 OS=Synechococcus sp. (strain CC9605) GN=thf1 PE=3 SV=1
Length = 215
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + + I +Y + EL+V+ HL+ ++ ++ + +F++G TV+D ++
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E +A+F+A ++ D + R L E A+G+ SL ++ S EG
Sbjct: 66 GYRPEAQTDALFRALCSSNGFDAAKLRKTYASLVEQAKGKDPESLKDWLSSHALKEG--- 122
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLLE 218
YSR AVGL LL+
Sbjct: 123 -----------SHYSRLMAVGLMSLLK 138
>sp|Q7U6N6|THF1_SYNPX Protein thf1 OS=Synechococcus sp. (strain WH8102) GN=thf1 PE=3 SV=1
Length = 212
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + + I +Y + EL+V+ HL+ ++ T+Q + +FA+G TV++R +
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E A+ A ++ D EQ + AQ + A G + + + ++ +G
Sbjct: 66 GYRPMEHPAALLSALCSSNGFDDEQLKQAAQHCLQDAEGHSDDAFQSWLKEQSLSDGA-- 123
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLL 217
YSR AVGL LL
Sbjct: 124 ------------HYSRLMAVGLLALL 137
>sp|Q46L45|THF1_PROMT Protein thf1 OS=Prochlorococcus marinus (strain NATL2A) GN=thf1
PE=3 SV=1
Length = 199
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 69 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 128
V T++++K +F K + IP+IY + EL+V+ HL+ +++ ++ D +F+ G V+ +
Sbjct: 3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSK 62
Query: 129 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
GY E +F A +P + +++L A+ T L F SK
Sbjct: 63 FTSGYKPSEHATKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTNN--- 119
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLL 217
KG YSR A+G+++L+
Sbjct: 120 ---------DNKGYDYYSRINAIGIYKLV 139
>sp|A2C211|THF1_PROM1 Protein thf1 OS=Prochlorococcus marinus (strain NATL1A) GN=thf1
PE=3 SV=1
Length = 199
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 69 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 128
V T++++K +F K + IP+IY + EL+V+ HL+ +++ ++ D +F+ G V+ +
Sbjct: 3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFCK 62
Query: 129 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
GY E +F A +P + +++L A+ T L F SK
Sbjct: 63 FTSGYKPSEHVTKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTNN--- 119
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLL 217
KG YSR A+G+++L+
Sbjct: 120 ---------DNKGYDYYSRINAIGIYKLV 139
>sp|A9BAB2|THF1_PROM4 Protein thf1 OS=Prochlorococcus marinus (strain MIT 9211) GN=thf1
PE=3 SV=1
Length = 221
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+E+K F K + +P++Y ++ ELIV+ +L++ + + D VFA+G +++ +
Sbjct: 6 TVSESKAIFHKEFPFVVPAVYRRLVDELIVELNLLKNQERFVADGVFAIGLTSIFLDFTK 65
Query: 132 GYPSEEDREAIFQAYITAL---KEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
GY E + + +A + EQ ++A+KL SL+ +++ E E
Sbjct: 66 GYKPENQKGILLEAICKCTGFSASNLEQIALEAKKLANGLNTNEIKSLITDNNRD-EKES 124
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKVRS 233
K I + N YSR A+G+++L+++ + ATE + L+ V +
Sbjct: 125 TYKLINK------NNHYSRIIAIGIYKLVDMQSNGFNKEEATENSYLDLVNN 170
>sp|Q7VC23|THF1_PROMA Protein thf1 OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=thf1 PE=3 SV=1
Length = 214
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T++++K F K + IP +Y VL E +V+ +L+ + ++ D +F+ G + ++R
Sbjct: 6 TISDSKGLFHKEFPYVIPPVYRKVLDEYLVELNLLSNQSNFKIDTIFSYGLIISFERFTV 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY + I ++ + D + + + +++ + ++ + E++ +
Sbjct: 66 GYEPDSHISKILESLCNSCNIDIKAIKEYSNNIKKLINEKGIKEIINILT--AEIKKSVG 123
Query: 192 DIA-ERASGKGNFSYSRFFAVGLFRLLELAN 221
IA SGK + YSR A+G++ L+ N
Sbjct: 124 GIALSNQSGKDKY-YSRLHAIGIYELISNIN 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,084,547
Number of Sequences: 539616
Number of extensions: 3248398
Number of successful extensions: 9261
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9210
Number of HSP's gapped (non-prelim): 47
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)