Query 025486
Match_columns 252
No_of_seqs 80 out of 82
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 11:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025486.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025486hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u2za_ c.66.1.31 (A:) Catalyt 48.2 13 0.00092 32.8 5.8 77 103-181 76-157 (406)
2 d2zjrk1 d.188.1.1 (K:3-115) Pr 46.6 11 0.00081 28.1 4.4 77 135-212 11-99 (113)
3 d3ci0k2 a.60.16.1 (K:94-203) P 45.3 14 0.001 26.4 4.8 33 138-170 18-50 (110)
4 d1m5ya1 a.223.1.2 (A:25-164,A: 35.5 63 0.0046 23.3 7.3 64 97-168 52-115 (173)
5 d1mzba_ a.4.5.42 (A:) Ferric u 33.7 19 0.0014 25.9 3.9 31 131-161 10-42 (134)
6 d1i4aa_ a.65.1.1 (A:) Annexin 32.2 36 0.0026 28.2 5.9 79 131-218 2-90 (309)
7 d1hm6a_ a.65.1.1 (A:) Annexin 26.6 53 0.0038 27.7 6.1 91 131-232 39-140 (343)
8 d1sm2a_ d.144.1.7 (A:) Tyrosin 25.8 38 0.0028 26.2 4.7 34 115-149 183-218 (263)
9 d2ev0a2 a.76.1.1 (A:63-136) Ma 25.2 38 0.0027 22.6 3.9 28 139-166 14-41 (74)
10 d1khda1 a.46.2.1 (A:12-80) Ant 25.1 80 0.0059 20.1 5.7 47 122-169 20-66 (69)
11 d1ni7a_ d.224.1.1 (A:) Hypothe 25.1 17 0.0013 27.8 2.4 41 114-154 83-123 (149)
12 d2vcha1 c.87.1.10 (A:6-476) Hy 25.0 39 0.0029 26.6 4.6 32 138-169 410-442 (471)
13 d2cqma1 d.188.1.1 (A:28-136) P 24.6 17 0.0012 26.8 2.1 58 154-212 22-84 (109)
14 d1a87a_ f.1.1.1 (A:) Colicin N 24.4 1.3E+02 0.0095 25.6 8.1 74 155-242 126-202 (297)
15 d1gd8a_ d.188.1.1 (A:) Prokary 23.9 22 0.0016 26.1 2.6 74 137-211 2-87 (105)
16 d2qamn1 d.188.1.1 (N:1-120) Pr 21.9 25 0.0019 26.3 2.7 77 135-212 13-101 (120)
17 d1axna_ a.65.1.1 (A:) Annexin 21.7 47 0.0035 27.7 4.7 89 132-230 17-115 (323)
18 d2cwqa1 a.152.1.4 (A:1-117) Hy 20.9 1.3E+02 0.0092 21.3 6.5 89 71-178 3-93 (117)
19 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 20.8 58 0.0042 21.9 4.3 32 124-159 34-67 (80)
20 d1o17a1 a.46.2.1 (A:1-70) Anth 20.6 1E+02 0.0073 19.6 6.0 55 109-169 13-67 (70)
No 1
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.21 E-value=13 Score=32.77 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=60.8
Q ss_pred HhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcCCccccc
Q 025486 103 QHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALK-----EDPEQYRIDAQKLEEWARGQTASSLV 177 (252)
Q Consensus 103 lHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg-----~DP~qyR~DA~~l~~~A~~~s~~~l~ 177 (252)
-||..-.....|||+.=+ +.+++-.-+.|=|++..+.|-+.+|..+. .|....+.--.+.-++......+++.
T Consensus 76 ~~~~~~~~~~~~~p~~ei--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~ 153 (406)
T d1u2za_ 76 YKVDFKRSTAIYNPMSEI--GKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRII 153 (406)
T ss_dssp EECCSSSCCSSSCHHHHH--HHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred EEEeccccccccCCHHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 566677778899999987 67899999999999999999999888764 67777777777777777766666555
Q ss_pred cccC
Q 025486 178 EFPS 181 (252)
Q Consensus 178 ~~~~ 181 (252)
..+.
T Consensus 154 ~~l~ 157 (406)
T d1u2za_ 154 DHLE 157 (406)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5444
No 2
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}
Probab=46.55 E-value=11 Score=28.09 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=60.0
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025486 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (252)
Q Consensus 135 peed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (252)
+.+||.+++.-|+.+|= --+.++|.-+++|.-+|+..+.. .+..|+..+..+..++..|+.+-+ +-+
T Consensus 11 ~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~iapry~-~R~ 89 (113)
T d2zjrk1 11 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 89 (113)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHHHhHHhc-CCC
Confidence 56899999999998873 34678999999999999987765 445666666678889999998886 455
Q ss_pred CcchhhHHHH
Q 025486 203 FSYSRFFAVG 212 (252)
Q Consensus 203 F~YSRlfAIG 212 (252)
--|+|++=+|
T Consensus 90 GGYTRI~kl~ 99 (113)
T d2zjrk1 90 GGYTRILRVG 99 (113)
T ss_dssp SCCCEEEECC
T ss_pred CCeEEEEECC
Confidence 5799876444
No 3
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=45.34 E-value=14 Score=26.41 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 025486 138 DREAIFQAYITALKEDPEQYRIDAQKLEEWARG 170 (252)
Q Consensus 138 d~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~ 170 (252)
..-..|..|+..+|.|+.+-+.-|..|.+|...
T Consensus 18 ~~~~~f~~Ll~~lgi~~~~a~~la~~l~DWiD~ 50 (110)
T d3ci0k2 18 LAVQQLIALISRLDVPAYRAELIAESLWEFIDE 50 (110)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCc
Confidence 355689999999999999999999999998864
No 4
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=35.53 E-value=63 Score=23.25 Aligned_cols=64 Identities=8% Similarity=0.000 Sum_probs=36.1
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 025486 97 QELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWA 168 (252)
Q Consensus 97 ~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A 168 (252)
++-|+.+..-.++-...-+. +-...+++.+.+... .+. |.+++.+.|+++++||+.-+.-.-|-
T Consensus 52 ~~~Ll~q~a~~~~i~vs~~e-----v~~~i~~~~~~~~~~--~~~-f~~~L~~~g~~~~~~~~~ir~~l~~~ 115 (173)
T d1m5ya1 52 MDQIILQMGQKMGVKISDEQ-----LDQAIANIAKQNNMT--LDQ-MRSRLAYDGLNYNTYRNQIRKEMIIS 115 (173)
T ss_dssp HHHHHHHHHHHTTCCCCHHH-----HHHHHHHHHHHTTCC--HHH-HHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHH-----HHHHHHHHHHHcCCC--HHH-HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33333444444444433332 334445555544322 222 88888999999999999875444433
No 5
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.71 E-value=19 Score=25.90 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=25.5
Q ss_pred cCCCCchhHHHHHHHHHHhcC--CCHHHHHHHH
Q 025486 131 EGYPSEEDREAIFQAYITALK--EDPEQYRIDA 161 (252)
Q Consensus 131 qGY~peed~~~IF~Alc~Alg--~DP~qyR~DA 161 (252)
.||++..+|..|+++|.++-+ ++++++-+..
T Consensus 10 ~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l 42 (134)
T d1mzba_ 10 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKAL 42 (134)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 699999999999999998865 7887776654
No 6
>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.20 E-value=36 Score=28.21 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=42.4
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHHHhcCCccccccccCC--cchhHHHHHHHHHHhcCC
Q 025486 131 EGYPSEEDREAIFQAYITALKEDPEQYRID--------AQKLEEWARGQTASSLVEFPSK--EGEVEGLLKDIAERASGK 200 (252)
Q Consensus 131 qGY~peed~~~IF~Alc~Alg~DP~qyR~D--------A~~l~~~A~~~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n 200 (252)
.||-|++|-+.|.+| ++..|-|.+.+-+. =+++...-+.+...+|.+.+.+ .|..+..+..+..
T Consensus 2 ~~fd~~~Da~~L~~A-~kg~g~de~~ii~IL~~rs~~qr~~i~~~Y~~~yg~dL~~~L~~e~sG~~~~~l~~l~~----- 75 (309)
T d1i4aa_ 2 SGFNAAEDAQTLRKA-MKGLGTDEDAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSGNFEQVILGMMT----- 75 (309)
T ss_dssp CSCCHHHHHHHHHHH-HSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHS-----
T ss_pred CCCCHHHHHHHHHHH-hhCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHHhCchHHHHHHHHhC-----
Confidence 478888888888888 56666666554221 0122222222233334333332 4555555554432
Q ss_pred CCCcchhhHHHHHHHHHh
Q 025486 201 GNFSYSRFFAVGLFRLLE 218 (252)
Q Consensus 201 ~~F~YSRlfAIGLf~LLE 218 (252)
....+.|.-|...|.
T Consensus 76 ---~p~~~dA~~l~~A~k 90 (309)
T d1i4aa_ 76 ---PTVLYDVQELRKAMK 90 (309)
T ss_dssp ---CHHHHHHHHHHHHHS
T ss_pred ---CHHHHHHHHHHHHhc
Confidence 235667888888775
No 7
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Probab=26.63 E-value=53 Score=27.73 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHH--------HHHHHHHHHhcCCccccccccCC--cchhHHHHHHHHHHhcCC
Q 025486 131 EGYPSEEDREAIFQAYITALKEDPEQYRI--------DAQKLEEWARGQTASSLVEFPSK--EGEVEGLLKDIAERASGK 200 (252)
Q Consensus 131 qGY~peed~~~IF~Alc~Alg~DP~qyR~--------DA~~l~~~A~~~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n 200 (252)
.||-|++|-+.|.+|+ +..|-|.+.+-+ .-+++...-+.....+|.+.+.+ .|..+.++..+..
T Consensus 39 ~~fd~~~Da~~L~kA~-kg~gtDe~~ii~IL~~rs~~Qr~~I~~~Y~~~ygkdL~~~Lk~elsG~f~~~l~~l~~----- 112 (343)
T d1hm6a_ 39 PTFNPSSDVEALHKAI-TVKGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLK----- 112 (343)
T ss_dssp SSCCHHHHHHHHHHHH-SSTTCCHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHS-----
T ss_pred CCCChHHHHHHHHHHh-cCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcHHHHHHHHcCCcHHHHHHHHcC-----
Q ss_pred CCCcchhhHHHHHHHHHhhcCC-CCHHHHHHHH
Q 025486 201 GNFSYSRFFAVGLFRLLELANA-TEPTVLEKVR 232 (252)
Q Consensus 201 ~~F~YSRlfAIGLf~LLE~a~~-~dp~~L~kl~ 232 (252)
.-.-+.|-.|...| .|. +|++.|-++.
T Consensus 113 ---~p~~~dA~~l~~A~--kG~gt~e~~LieIl 140 (343)
T d1hm6a_ 113 ---TPAQFDADELRAAM--KGLGTDEDTLNEIL 140 (343)
T ss_dssp ---CHHHHHHHHHHHHH--SSSCCCHHHHHHHH
T ss_pred ---CHhHHHHHHHHHHH--hCCCchhHhHhhhe
No 8
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.81 E-value=38 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=24.4
Q ss_pred cccchhhHHHHHHHHhcCCCCchh--HHHHHHHHHHh
Q 025486 115 DPVFALGFVTVYDRLMEGYPSEED--REAIFQAYITA 149 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~peed--~~~IF~Alc~A 149 (252)
..|||+|+ +.|+-++.|.||.+. ...+.+.+.+.
T Consensus 183 ~DVwS~Gv-il~el~t~~~~~~~~~~~~~~~~~i~~~ 218 (263)
T d1sm2a_ 183 SDVWSFGV-LMWEVFSEGKIPYENRSNSEVVEDISTG 218 (263)
T ss_dssp HHHHHHHH-HHHHHHTTSCCTTCSCCHHHHHHHHHHT
T ss_pred hhhcchHH-HHHHHHHCCCCCCCCCCHHHHHHHHHhc
Confidence 37999997 678888888887653 33566666554
No 9
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=25.18 E-value=38 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025486 139 REAIFQAYITALKEDPEQYRIDAQKLEE 166 (252)
Q Consensus 139 ~~~IF~Alc~Alg~DP~qyR~DA~~l~~ 166 (252)
|-.|..-+.+.+|.|++....+|.+++-
T Consensus 14 rHrlle~fL~~lg~~~~~a~~~A~~iEH 41 (74)
T d2ev0a2 14 RHELLEQFLRIIGVDEEKIYNDVEGIEH 41 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 4567788889999999999999999876
No 10
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=25.14 E-value=80 Score=20.15 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 025486 122 FVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWAR 169 (252)
Q Consensus 122 ~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~ 169 (252)
...+|+.+|.|--|+.+..++.-|+ ..-|++++.+-.-++.+.+.++
T Consensus 20 ~~~~~~~i~~g~~~d~qiaafL~al-~~kg~t~dEi~g~~~am~~~~~ 66 (69)
T d1khda1 20 SHQLFAAIVRGELEDSQLAAALISM-KMRGERPEEIAGAASALLADAQ 66 (69)
T ss_dssp HHHHHHHHTTTCSCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC
Confidence 3568999999998888888777765 4568899988888888877543
No 11
>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]}
Probab=25.12 E-value=17 Score=27.78 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=28.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCH
Q 025486 114 YDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDP 154 (252)
Q Consensus 114 YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP 154 (252)
-|..-.=|++.+.-....|.+|+|-...=...+++.+|++.
T Consensus 83 SDa~IvkGl~~iL~~~~sg~t~~eI~~~~~~~~~~~lGL~~ 123 (149)
T d1ni7a_ 83 SEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRA 123 (149)
T ss_dssp ESSHHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSS
T ss_pred ccHHHHHHHHHHHHHHHCCCCHHHHHhcCHHHHHHHCCChh
Confidence 46677779999999999999987744321445566666543
No 12
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.05 E-value=39 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHh
Q 025486 138 DREAIFQAYITALKEDP-EQYRIDAQKLEEWAR 169 (252)
Q Consensus 138 d~~~IF~Alc~Alg~DP-~qyR~DA~~l~~~A~ 169 (252)
.++.|-+|+.+-++.+. .+||+.|++|.+.++
T Consensus 410 t~~~l~~ai~~vl~~~~~~~~r~ra~~l~e~~~ 442 (471)
T d2vcha1 410 RREEVARVVKGLMEGEEGKGVRNKMKELKEAAC 442 (471)
T ss_dssp CHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 45778899888886332 589999999998776
No 13
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=17 Score=26.81 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhcCCccc-----cccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHH
Q 025486 154 PEQYRIDAQKLEEWARGQTASS-----LVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVG 212 (252)
Q Consensus 154 P~qyR~DA~~l~~~A~~~s~~~-----l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIG 212 (252)
+..+|.-+++|..+|+-.+... ...|+..+..+..++..|+.+-++ -+--|+|++=+|
T Consensus 22 AKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~-R~GGYTRI~kl~ 84 (109)
T d2cqma1 22 VDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKD-QTGGYTRMLQIP 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHH-SCSCCEEEEEEC
T ss_pred HHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhc-CCCCeEEEEecC
Confidence 5678999999999999766653 224666667788888999888763 445799886544
No 14
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=24.42 E-value=1.3e+02 Score=25.60 Aligned_cols=74 Identities=7% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHh---cCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHHH
Q 025486 155 EQYRIDAQKLEEWAR---GQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231 (252)
Q Consensus 155 ~qyR~DA~~l~~~A~---~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~kl 231 (252)
++|++-|++|.+-++ |+...+.. ..|+.+ ++...|++.+++.=-=-.|...||..+ -+.+.+=
T Consensus 126 ~Kyk~lA~eLA~~aKnfqGKkIRsvd----------eALks~-eK~~~n~nkKinakDR~AI~nALksid---~~~mAkN 191 (297)
T d1a87a_ 126 VKYKNVAKEVANDIKNFHGRNIRSYN----------EAMASL-NKVLANPKMKVNKSDKDAIVNAWKQVN---AKDMANK 191 (297)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCCHH----------HHHHHH-HHHHTCTTCCCCHHHHHHHHHHHHTCC---HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCccCCHH----------HHHHHH-HHHhhCccccccccCHHHHHHHHHhcC---HHHHHHH
Confidence 578999999999999 66655443 355554 345568999999666666778886553 4444444
Q ss_pred HHhhhhccCcc
Q 025486 232 RSTFFDNIGTS 242 (252)
Q Consensus 232 ~~~l~~~lgls 242 (252)
...|+..+|+.
T Consensus 192 L~kfsK~Fk~~ 202 (297)
T d1a87a_ 192 IGNLGKAFKVA 202 (297)
T ss_dssp HHTTCGGGCCT
T ss_pred HHHHHhhcCcc
Confidence 45566666553
No 15
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}
Probab=23.87 E-value=22 Score=26.09 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCccc---cccccCCcchhHHHHHHHHHHhcCCCCCc
Q 025486 137 EDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTASS---LVEFPSKEGEVEGLLKDIAERASGKGNFS 204 (252)
Q Consensus 137 ed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~~---l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~ 204 (252)
.||.+++.-|+.+|= --+..+|.-+++|..+|+..+... +..++.....+..++..|+.+-+ +-+--
T Consensus 2 shR~allrnl~t~Li~~erI~TT~~KAKelr~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~KLf~~lapry~-~R~GG 80 (105)
T d1gd8a_ 2 SHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYR-DRQGG 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTS-SCCSC
T ss_pred hHHHHHHHHHHHHHHHcCEEEEcHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-cCCCC
Confidence 466667766666652 346779999999999999876654 45556556678888899998886 45557
Q ss_pred chhhHHH
Q 025486 205 YSRFFAV 211 (252)
Q Consensus 205 YSRlfAI 211 (252)
|+|+.=+
T Consensus 81 YTRI~kl 87 (105)
T d1gd8a_ 81 YTRVLKL 87 (105)
T ss_dssp CEEEEEE
T ss_pred eEEEEec
Confidence 8887543
No 16
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}
Probab=21.91 E-value=25 Score=26.28 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025486 135 SEEDREAIFQAYITAL---------KEDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (252)
Q Consensus 135 peed~~~IF~Alc~Al---------g~DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (252)
+.+||.+++.-|+.+| .--+..+|.-+++|..+|+..+.. .+..|+.....+..++..|+.+-. +-+
T Consensus 13 ~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf~~iapry~-~R~ 91 (120)
T d2qamn1 13 NSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFA-SRA 91 (120)
T ss_dssp CTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTTTTHHHHTT-TCC
T ss_pred ChHHHHHHHHHHHHHHHHcCCeEecHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccCHHHHHHHHHHHHhHhc-CCC
Confidence 4577888887777775 245778999999999999987776 467777777778888899998886 555
Q ss_pred CcchhhHHHH
Q 025486 203 FSYSRFFAVG 212 (252)
Q Consensus 203 F~YSRlfAIG 212 (252)
--|+|+.=+|
T Consensus 92 GGYTRI~klg 101 (120)
T d2qamn1 92 GGYTRILKCG 101 (120)
T ss_dssp SCCEECCCCC
T ss_pred CCeeeeeecC
Confidence 5899976444
No 17
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.74 E-value=47 Score=27.69 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHH--------HHHHHHHHHhcCCccccccccCC--cchhHHHHHHHHHHhcCCC
Q 025486 132 GYPSEEDREAIFQAYITALKEDPEQYRI--------DAQKLEEWARGQTASSLVEFPSK--EGEVEGLLKDIAERASGKG 201 (252)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~DP~qyR~--------DA~~l~~~A~~~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n~ 201 (252)
+|-|+.|-+.|.+| ++..|-|.+.+-+ +-+++...-+..-..+|.+.+.+ .|..+.++.++..
T Consensus 17 ~fd~~~Da~~L~kA-~kg~gtDe~~ii~IL~~rs~~qr~~I~~~Y~~~ygkdL~~~lk~elsG~f~~~l~~l~~------ 89 (323)
T d1axna_ 17 DFSPSVDAEAIQKA-IRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVT------ 89 (323)
T ss_dssp TCCHHHHHHHHHHH-HSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHS------
T ss_pred CCChHHHHHHHHHH-hhCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHhCchHHHHHHHHcC------
Confidence 56677777777777 4667766655432 11222222222233344444432 4666666665542
Q ss_pred CCcchhhHHHHHHHHHhhcCCCCHHHHHH
Q 025486 202 NFSYSRFFAVGLFRLLELANATEPTVLEK 230 (252)
Q Consensus 202 ~F~YSRlfAIGLf~LLE~a~~~dp~~L~k 230 (252)
....+.|.-|...|.- +.+|...|-+
T Consensus 90 --~p~~~dA~~l~~A~kg-~gtde~~Lie 115 (323)
T d1axna_ 90 --PPAVFDAKQLKKSMKG-AGTNEDALIE 115 (323)
T ss_dssp --CHHHHHHHHHHHHHCS-SSCCHHHHHH
T ss_pred --CHHHHHHHHHHHHHhc-cCCchHHhhh
Confidence 3567788888888842 2355544433
No 18
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=20.86 E-value=1.3e+02 Score=21.27 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=62.0
Q ss_pred CchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHh--cCCCCchhHHHHHHHHHH
Q 025486 71 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM--EGYPSEEDREAIFQAYIT 148 (252)
Q Consensus 71 ~TVSDTKr~F~~~y~rPIpsIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fm--qGY~peed~~~IF~Alc~ 148 (252)
+|.-+-.+..-+.+...||.++..+.| .+|=+.-.+...++..| +|-=+..+|+.|.=|.-.
T Consensus 3 ~~~e~~l~~~~~~~G~~~P~~~~~mae----------------~~P~~l~~~~~~~~~~~~~~g~Ld~k~reLI~la~s~ 66 (117)
T d2cwqa1 3 RTHERVLQAMAENLGEGLPRAIPLLAE----------------KAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIAL 66 (117)
T ss_dssp SSSHHHHHHHHHHHGGGCCTHHHHHHH----------------HCHHHHHHHHHHHHHHSCTTCSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccHHHHHHHH----------------hChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 345556667777777778877777765 45655555666666655 566788999999999988
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025486 149 ALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (252)
Q Consensus 149 Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (252)
++|-+ ..++.-.+...+ .|.|.++|.+
T Consensus 67 a~gc~-~c~~~h~~~A~~--~G~t~eEI~E 93 (117)
T d2cwqa1 67 ATGSE-ACVKAMAHRAKR--LGLSKEALLE 93 (117)
T ss_dssp HHTCH-HHHHHHHHHHHH--HTCCHHHHHH
T ss_pred HcCCh-HHHHHHHHHHHH--cCCCHHHHHH
Confidence 88864 466666655544 6788777775
No 19
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.84 E-value=58 Score=21.94 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=22.4
Q ss_pred HHHHHH--hcCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 025486 124 TVYDRL--MEGYPSEEDREAIFQAYITALKEDPEQYRI 159 (252)
Q Consensus 124 TvFd~f--mqGY~peed~~~IF~Alc~Alg~DP~qyR~ 159 (252)
..|++. +.-||.+++++ .||+-+|+++.+++-
T Consensus 34 ~~fe~~~~~~~~p~~~~~~----~la~~~gl~~~~i~v 67 (80)
T d1wh7a_ 34 AFAERLGWRIQKHDDVAVE----QFCAETGVRRQVLKI 67 (80)
T ss_dssp HHHHHHTSCCCSSTTHHHH----HHHHHSCCCHHHHHH
T ss_pred HHHHHhcccccCcCHHHHH----HHHHHHCCCHHHeee
Confidence 345554 34687666554 789999999998763
No 20
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.61 E-value=1e+02 Score=19.59 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=41.5
Q ss_pred cccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 025486 109 KRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWAR 169 (252)
Q Consensus 109 n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~ 169 (252)
..+..++.+ -.+|+.+|.|--|+.+..++.-|+ ..-|+.++.+-.-++.+.+.+.
T Consensus 13 g~~Ls~~e~-----~~~~~~i~~g~~s~~qiaafL~al-~~kGet~~Ei~g~~~amr~~~~ 67 (70)
T d1o17a1 13 KSDLEINEA-----EELAKAIIRGEVPEILVSAILVAL-RMKGESKNEIVGFARAMRELAI 67 (70)
T ss_dssp TCCCCHHHH-----HHHHHHHHTTCSCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHH-----HHHHHHHHcCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcc
Confidence 344445443 467999999999988888777664 6678999999888888887654
Done!