BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025488
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
GN=RPP25L PE=1 SV=1
Length = 163
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 1 MDRYQKV-------EKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
M+ Y+K P P+ P + E+R+ IRN + A L+ A+ +V
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
G+A K V+ AEI+K+R+P LHQ T + + D+W P + GL P+ + RHV + +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120
Query: 112 FSTRELNKNSPGYQSP 127
S L+ N GYQ P
Sbjct: 121 LSRDPLDPNECGYQPP 136
>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
GN=Rpp25l PE=2 SV=1
Length = 163
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 10 PKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKK 69
P P+ P + E+R+ IRN + A L+ + +V G+A K V+ AEI+K+
Sbjct: 17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSP 127
R+P LHQ T + + D+W P + GL P+ + RHV + + S L+ + GYQ P
Sbjct: 77 RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
GN=RPP25L PE=2 SV=1
Length = 163
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 1 MDRYQKV-------EKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
M+ Y+K P P+ P + E+R+ IRN + A L+ A+ +V
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60
Query: 54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
G+A K V+ AEI+K+R+P L+Q T + + D+W P + GL P+ + HV + +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120
Query: 112 FSTRELNKNSPGYQSP 127
S L+ N GYQ P
Sbjct: 121 LSRDPLDPNEYGYQPP 136
>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
SV=1
Length = 199
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 21 IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI 80
+R+ IRN + +AT + + + IV G+A KTV AEI+K+R+ LHQ T +
Sbjct: 38 MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 SSVSITDTWEPIEEG----------LVPVEMTRHVSMISITFSTRELNKNSPGYQSPH 128
S+ + W+ + G + + ++V ++I S L+ PGYQ P+
Sbjct: 98 RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN 155
>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
PE=2 SV=1
Length = 199
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 21 IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI 80
+R+ IRN + +AT + + + IV G+A KTV AEI+K+R+ LHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 SSVSITDTWEPI----------EEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNA 130
S+ + W+ + + + + ++V ++I S L+ GYQ P+ +
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157
Query: 131 EQP 133
P
Sbjct: 158 PGP 160
>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
SV=1
Length = 199
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 21 IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI 80
+R+ IRN + +AT + + + IV G+A KTV AEI+K+R+ LHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 SSVSITDTWEPI----------EEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNA 130
S+ + W+ + + + + ++V ++I S L+ GYQ P+ +
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157
Query: 131 EQP 133
P
Sbjct: 158 PGP 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,568,948
Number of Sequences: 539616
Number of extensions: 5639711
Number of successful extensions: 81648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 955
Number of HSP's that attempted gapping in prelim test: 35331
Number of HSP's gapped (non-prelim): 19859
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)