Query 025488
Match_columns 252
No_of_seqs 215 out of 384
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:21:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 8.6E-26 2.9E-30 178.8 13.3 93 18-118 6-101 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 1.4E-24 4.9E-29 167.9 11.9 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 2.3E-24 7.8E-29 169.2 12.9 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 2E-24 6.7E-29 166.5 11.4 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 2.1E-21 7.1E-26 150.8 12.4 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.9 3.5E-21 1.2E-25 149.0 11.0 84 17-115 5-88 (89)
7 1vm0_A Unknown protein; struct 99.8 6.9E-19 2.4E-23 144.4 10.6 90 15-115 17-107 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 1.3E-16 4.3E-21 132.3 14.0 107 6-113 14-139 (140)
9 3iab_A Ribonucleases P/MRP pro 98.3 8E-06 2.7E-10 68.7 11.8 91 21-116 47-146 (158)
10 1b34_A Protein (small nuclear 89.4 0.069 2.4E-06 42.4 0.0 7 103-109 53-59 (119)
11 2ek0_A Stage V sporulation pro 82.1 15 0.00051 28.0 10.7 51 19-71 2-53 (90)
12 2crq_A Mitochondrial translati 44.4 1.1E+02 0.0037 23.8 8.2 58 16-74 13-74 (112)
13 2k9u_B Filamin-binding LIM pro 43.6 13 0.00043 22.1 1.8 18 101-118 6-23 (26)
14 1i96_V Translation initiation 31.4 1.6E+02 0.0055 21.9 6.8 71 19-96 3-76 (89)
15 1tig_A IF3-C, translation init 28.0 1.4E+02 0.0048 22.4 6.0 53 17-69 6-61 (94)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.93 E-value=8.6e-26 Score=178.77 Aligned_cols=93 Identities=32% Similarity=0.456 Sum_probs=84.5
Q ss_pred CCeEEEcCCCchhHHHHHHH-HHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhc-CCCe-eEeEEEEEEeeeccccccC
Q 025488 18 ENEIRITTQGAIRNYITYAT-TLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLH-QDTAISSVSITDTWEPIEE 94 (252)
Q Consensus 18 ~NeIrVt~~~~i~nyV~~A~-~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi-~gLh-Qit~I~s~~i~D~~EP~eE 94 (252)
+|+|+|++++. +|||.+|+ .||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|++++|.|| +
T Consensus 6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 59999999854 89999999 9998 58999999999999999999999999999 7999 999999999999865 5
Q ss_pred CCccceeeEEeeEEEEEEecCCCC
Q 025488 95 GLVPVEMTRHVSMISITFSTRELN 118 (252)
Q Consensus 95 gld~v~~~R~Vs~I~ItLSk~~LD 118 (252)
|+ ..+|+||+|+|+|+++|..
T Consensus 81 g~---~~~r~vS~IeI~Lsk~~~~ 101 (102)
T 2h9u_A 81 GQ---TRTRRVSSIEICLEKAGES 101 (102)
T ss_dssp SC---EEEEEEEEEEEEEEECSSC
T ss_pred Cc---cceeEeeeEEEEEEccCCC
Confidence 54 3799999999999998753
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.92 E-value=1.4e-24 Score=167.87 Aligned_cols=86 Identities=30% Similarity=0.534 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhc-CCCe-eEeEEEEEEeeeccccccC
Q 025488 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLH-QDTAISSVSITDTWEPIEE 94 (252)
Q Consensus 17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi-~gLh-Qit~I~s~~i~D~~EP~eE 94 (252)
++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.| ++
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 57999999975 9999999999998 48999999999999999999999999999 8899 999999998865 45
Q ss_pred CCccceeeEEeeEEEEEEec
Q 025488 95 GLVPVEMTRHVSMISITFST 114 (252)
Q Consensus 95 gld~v~~~R~Vs~I~ItLSk 114 (252)
| .+|+||+|+|+|++
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 5 58999999999985
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=2.3e-24 Score=169.20 Aligned_cols=89 Identities=33% Similarity=0.503 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCC--C-eeEeEEEEEEeeecccc
Q 025488 15 PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQ--L-HQDTAISSVSITDTWEP 91 (252)
Q Consensus 15 p~~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~g--L-hQit~I~s~~i~D~~EP 91 (252)
+.++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+||.+ | ||.++|+|++++|
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~---- 79 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS---- 79 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence 4568999999987 9999999999999 4899999999999999999999999999965 8 8999999999977
Q ss_pred ccCCCccceeeEEeeEEEEEEecC
Q 025488 92 IEEGLVPVEMTRHVSMISITFSTR 115 (252)
Q Consensus 92 ~eEgld~v~~~R~Vs~I~ItLSk~ 115 (252)
++| .+|+||+|+|+|+++
T Consensus 80 -e~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 80 -QDG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp -TTS-----CEEEEEEEEEEEEEC
T ss_pred -CCC-----cEEEeeEEEEEEEcC
Confidence 455 589999999999973
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.91 E-value=2e-24 Score=166.46 Aligned_cols=84 Identities=30% Similarity=0.527 Sum_probs=73.5
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhc-CCCe-eEeEEEEEEeeeccccccCC
Q 025488 18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLH-QDTAISSVSITDTWEPIEEG 95 (252)
Q Consensus 18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi-~gLh-Qit~I~s~~i~D~~EP~eEg 95 (252)
+|+|+|+++ ++++||.+|+.||++ + ++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.| ++|
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence 699999999 999999999999996 6 99999999999999999999999999 6799 999999998876 344
Q ss_pred CccceeeEEeeEEEEEEec
Q 025488 96 LVPVEMTRHVSMISITFST 114 (252)
Q Consensus 96 ld~v~~~R~Vs~I~ItLSk 114 (252)
.+|+||+|+|+|++
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 58999999999985
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.86 E-value=2.1e-21 Score=150.81 Aligned_cols=89 Identities=29% Similarity=0.402 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCC
Q 025488 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGL 96 (252)
Q Consensus 17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgl 96 (252)
++|.|+|.++ ++++||.+|+.||+ +++++|+|||+|+||+|||++|||||+||... +++.++++..+|.+.++|
T Consensus 3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~---v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFIPD---IQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTCTT---CEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHHHhccCC---cEEEEEEeeeEEeecCCC-
Confidence 3689999986 89999999999998 48999999999999999999999999999653 566666677778888888
Q ss_pred ccceeeEEeeEEEEEEecC
Q 025488 97 VPVEMTRHVSMISITFSTR 115 (252)
Q Consensus 97 d~v~~~R~Vs~I~ItLSk~ 115 (252)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 489999999999985
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.85 E-value=3.5e-21 Score=148.99 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCC
Q 025488 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGL 96 (252)
Q Consensus 17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgl 96 (252)
++|.|+|+++ +++|||.+|+.||+ +++++|+|||+|+||+|||+||||||+||.++|++.+|...+- +
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se--------~-- 72 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSE--------V-- 72 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE--------E--
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEeccc--------c--
Confidence 3466666664 99999999999999 5899999999999999999999999999998899977654321 1
Q ss_pred ccceeeEEeeEEEEEEecC
Q 025488 97 VPVEMTRHVSMISITFSTR 115 (252)
Q Consensus 97 d~v~~~R~Vs~I~ItLSk~ 115 (252)
..+|+||+|+|+|++.
T Consensus 73 ---~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ---RDRRRISYILLRLKRV 88 (89)
T ss_dssp ---ETTEEEEEEEEEEEEC
T ss_pred ---CcceEeeeEEEEEEec
Confidence 4589999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.78 E-value=6.9e-19 Score=144.39 Aligned_cols=90 Identities=23% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCCCCeEEEcC-CCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeecccccc
Q 025488 15 PINENEIRITT-QGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIE 93 (252)
Q Consensus 15 p~~~NeIrVt~-~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~e 93 (252)
..++|+|+|+. ++++++||.+|+.+|+ ++++|+|||||+||++||+||||||+|+...++.+.|+|.++.+.
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 34689999997 4899999999999998 579999999999999999999999999754455556677666441
Q ss_pred CCCccceeeEEeeEEEEEEecC
Q 025488 94 EGLVPVEMTRHVSMISITFSTR 115 (252)
Q Consensus 94 Egld~v~~~R~Vs~I~ItLSk~ 115 (252)
++ ....++|.|+|+|++.
T Consensus 90 ~~----~r~v~~skIEI~L~k~ 107 (130)
T 1vm0_A 90 AR----GRPVQKAKIEITLVKS 107 (130)
T ss_dssp --------CEEEEEEEEEEEEC
T ss_pred CC----CcccccceEEEEEEec
Confidence 11 2355679999999964
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.3e-16 Score=132.26 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=86.4
Q ss_pred eccCCCCCCCCC----CCeEEEcCCCchhHHHHHHHHHHhhc---CCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEe
Q 025488 6 KVEKPKPESPIN----ENEIRITTQGAIRNYITYATTLLQEK---HAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDT 78 (252)
Q Consensus 6 rv~kp~~~~p~~----~NeIrVt~~~~i~nyV~~A~~lL~~k---~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit 78 (252)
.+.+..+-.|.. +|+|+|+++++|...|..|.+||++- +.++|+|+|||+||.|||+||..|+++. ++...+
T Consensus 14 ~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~V 92 (140)
T 3iab_B 14 RVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIEV 92 (140)
T ss_dssp CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEEE
T ss_pred ccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEEE
Confidence 344444444543 79999999999999999999999751 5799999999999999999999999974 588889
Q ss_pred EEEEEEeeeccccccCC------------CccceeeEEeeEEEEEEe
Q 025488 79 AISSVSITDTWEPIEEG------------LVPVEMTRHVSMISITFS 113 (252)
Q Consensus 79 ~I~s~~i~D~~EP~eEg------------ld~v~~~R~Vs~I~ItLS 113 (252)
.++|+.+.|+++|.++. .++...+|+||+|||.|.
T Consensus 93 ~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy 139 (140)
T 3iab_B 93 YTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY 139 (140)
T ss_dssp EEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred EeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence 99999999999998764 568899999999999986
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.29 E-value=8e-06 Score=68.67 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=69.7
Q ss_pred EEEcCCCchhHHHHHHHHHHhh-----cCCCEEEEEEcchhHHHHHHHHHHHHHhc----CCCeeEeEEEEEEeeecccc
Q 025488 21 IRITTQGAIRNYITYATTLLQE-----KHAKEIVLKAMGQAINKTVAIAEIIKKRI----PQLHQDTAISSVSITDTWEP 91 (252)
Q Consensus 21 IrVt~~~~i~nyV~~A~~lL~~-----k~~~~VvIkg~G~AIsKAV~vAEILKrRi----~gLhQit~I~s~~i~D~~EP 91 (252)
+.|+++..|+..|+.-.++|+. ...+.|.|.+.|..|.|++++.||+|..+ +.|||++++.+..... |
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~---~ 123 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR---E 123 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC---c
Confidence 4489999999999999898841 24589999999999999999999999977 2499999998865432 2
Q ss_pred ccCCCccceeeEEeeEEEEEEecCC
Q 025488 92 IEEGLVPVEMTRHVSMISITFSTRE 116 (252)
Q Consensus 92 ~eEgld~v~~~R~Vs~I~ItLSk~~ 116 (252)
... +-++...+||-+-+.+++++
T Consensus 124 grN--ELle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 124 GRN--ELQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp -------CCCCEEEEEEEEEEESSS
T ss_pred ccc--HHHHhhcCCCEEEEEEeccc
Confidence 222 23466778998888888753
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=89.37 E-value=0.069 Score=42.40 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.9
Q ss_pred EEeeEEE
Q 025488 103 RHVSMIS 109 (252)
Q Consensus 103 R~Vs~I~ 109 (252)
+++..|.
T Consensus 53 ~~lg~v~ 59 (119)
T 1b34_A 53 VQLETLS 59 (119)
T ss_dssp EEEEEEE
T ss_pred eEcceEE
Confidence 3444443
No 11
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=82.07 E-value=15 Score=28.03 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=39.1
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHhc
Q 025488 19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG-QAINKTVAIAEIIKKRI 71 (252)
Q Consensus 19 NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G-~AIsKAV~vAEILKrRi 71 (252)
+.+.|+++++....-..--.+|.+. ..|.|.++| .|++.||.-.-|-+.=+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe~--~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRTK--GEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHH--SEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhcC--CceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 4689999998888777767777754 599999999 58888887666655544
No 12
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.36 E-value=1.1e+02 Score=23.75 Aligned_cols=58 Identities=9% Similarity=0.140 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCchhHH---HHHHHHHHhhcCCCEEEEEEcchhHH-HHHHHHHHHHHhcCCC
Q 025488 16 INENEIRITTQGAIRNY---ITYATTLLQEKHAKEIVLKAMGQAIN-KTVAIAEIIKKRIPQL 74 (252)
Q Consensus 16 ~~~NeIrVt~~~~i~ny---V~~A~~lL~~k~~~~VvIkg~G~AIs-KAV~vAEILKrRi~gL 74 (252)
+.-.||+++.+..-.+| +..|..+|++...=.|+|+ .|+.|+ ..=...++|.+-...|
T Consensus 13 ~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~~~~e~g~~lL~r~~~~l 74 (112)
T 2crq_A 13 TMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAEQSEEETEEIFNQILQTM 74 (112)
T ss_dssp SCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCSCCHHHHHHHHHHHHTTS
T ss_pred ceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCccccccHHHHHHHHHHHHHHh
Confidence 45579999887766665 5689999987666788889 999887 3333334444433333
No 13
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=43.57 E-value=13 Score=22.14 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=13.9
Q ss_pred eeEEeeEEEEEEecCCCC
Q 025488 101 MTRHVSMISITFSTRELN 118 (252)
Q Consensus 101 ~~R~Vs~I~ItLSk~~LD 118 (252)
.+|-+|+|.|||...-.|
T Consensus 6 eKR~aSSvFITLapp~r~ 23 (26)
T 2k9u_B 6 EKRVASSVFITLAPPRRD 23 (26)
T ss_dssp SSSCEEEEEEEECCSSCC
T ss_pred hhheeeeEEEEecCcccc
Confidence 368899999999865443
No 14
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=31.40 E-value=1.6e+02 Score=21.88 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=43.0
Q ss_pred CeEEEcCCCc---hhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCC
Q 025488 19 NEIRITTQGA---IRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEG 95 (252)
Q Consensus 19 NeIrVt~~~~---i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEg 95 (252)
.||+++.+.. +.-=+..|.++|++...=.|+|+=.|+.+...=.-.++|.+-...| .++.+++- .|..||
T Consensus 3 KEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l---~d~~~ve~----~pk~eG 75 (89)
T 1i96_V 3 KSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDL---KDLAVVEM----KPEMLG 75 (89)
T ss_pred eEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHh---hhheEEec----CccccC
Confidence 4677765543 4444668999998766677888888998876544455554433323 23444332 366666
Q ss_pred C
Q 025488 96 L 96 (252)
Q Consensus 96 l 96 (252)
-
T Consensus 76 r 76 (89)
T 1i96_V 76 R 76 (89)
T ss_pred C
Confidence 3
No 15
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=28.02 E-value=1.4e+02 Score=22.42 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCeEEEcCCCchhHH---HHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHH
Q 025488 17 NENEIRITTQGAIRNY---ITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKK 69 (252)
Q Consensus 17 ~~NeIrVt~~~~i~ny---V~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKr 69 (252)
.-.||+++.+..-..| +..|.++|++...=.|+|+-.|+.|...=.-.++|.+
T Consensus 6 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r 61 (94)
T 1tig_A 6 NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDR 61 (94)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHH
T ss_pred eeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHH
Confidence 3468999887666665 5689999987666778888889887765444444444
Done!