Query 025490
Match_columns 252
No_of_seqs 192 out of 1589
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 1.5E-32 3.2E-37 221.3 16.1 136 2-249 1-137 (138)
2 KOG1718 Dual specificity phosp 100.0 1.6E-32 3.5E-37 225.5 13.1 137 3-251 18-155 (198)
3 KOG1717 Dual specificity phosp 100.0 3.4E-31 7.3E-36 231.4 11.8 140 1-250 171-311 (343)
4 KOG1716 Dual specificity phosp 100.0 1.1E-29 2.5E-34 229.1 15.2 140 2-250 75-215 (285)
5 cd00127 DSPc Dual specificity 100.0 2.4E-29 5.2E-34 201.8 15.1 137 2-248 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 1.9E-29 4E-34 201.6 13.2 132 9-250 1-133 (133)
7 PRK12361 hypothetical protein; 99.9 3.9E-25 8.6E-30 215.5 16.0 142 2-252 95-238 (547)
8 PTZ00242 protein tyrosine phos 99.8 3.9E-20 8.5E-25 154.8 14.9 95 100-252 60-159 (166)
9 KOG1719 Dual specificity phosp 99.8 2.2E-20 4.8E-25 152.0 11.6 141 4-250 27-169 (183)
10 PTZ00393 protein tyrosine phos 99.8 1.8E-19 3.8E-24 157.5 15.1 94 99-251 135-229 (241)
11 COG2453 CDC14 Predicted protei 99.7 8.4E-16 1.8E-20 130.1 11.9 67 98-165 69-137 (180)
12 KOG1720 Protein tyrosine phosp 99.6 5.8E-15 1.2E-19 125.9 13.6 94 98-192 112-205 (225)
13 PF05706 CDKN3: Cyclin-depende 99.5 2.2E-13 4.7E-18 113.2 10.7 106 17-168 61-168 (168)
14 TIGR01244 conserved hypothetic 99.4 8.7E-12 1.9E-16 100.9 13.0 127 3-179 3-129 (135)
15 PF03162 Y_phosphatase2: Tyros 99.4 3.2E-12 7E-17 106.8 9.9 119 3-173 8-129 (164)
16 KOG2836 Protein tyrosine phosp 99.2 1.9E-10 4.2E-15 92.1 12.1 75 100-176 61-138 (173)
17 PF04273 DUF442: Putative phos 99.1 2.7E-10 5.9E-15 89.2 9.2 103 3-154 3-105 (110)
18 smart00404 PTPc_motif Protein 99.1 1.5E-09 3.3E-14 81.8 11.0 57 104-160 5-65 (105)
19 smart00012 PTPc_DSPc Protein t 99.1 1.5E-09 3.3E-14 81.8 11.0 57 104-160 5-65 (105)
20 PLN02727 NAD kinase 98.9 5.7E-09 1.2E-13 105.6 11.6 108 8-162 262-369 (986)
21 cd00047 PTPc Protein tyrosine 98.8 3.7E-08 8E-13 85.7 10.9 66 100-165 128-202 (231)
22 COG5350 Predicted protein tyro 98.7 9.9E-08 2.2E-12 78.1 10.5 48 118-165 77-125 (172)
23 smart00194 PTPc Protein tyrosi 98.7 1.3E-07 2.8E-12 83.7 10.3 50 110-159 167-218 (258)
24 COG3453 Uncharacterized protei 98.6 6.3E-07 1.4E-11 70.6 10.7 118 4-173 5-124 (130)
25 PF13350 Y_phosphatase3: Tyros 98.6 2.9E-07 6.3E-12 76.4 9.1 33 5-37 16-52 (164)
26 PF14566 PTPlike_phytase: Inos 98.4 4.6E-07 1E-11 74.5 6.2 60 97-158 88-148 (149)
27 PRK15375 pathogenicity island 98.4 2.4E-06 5.2E-11 82.2 10.9 65 101-165 422-498 (535)
28 PF00102 Y_phosphatase: Protei 98.2 8.3E-06 1.8E-10 70.1 9.8 37 123-159 157-195 (235)
29 PHA02742 protein tyrosine phos 98.2 1.5E-05 3.2E-10 72.9 10.8 24 135-158 230-253 (303)
30 KOG2283 Clathrin coat dissocia 98.1 5.1E-06 1.1E-10 79.2 6.7 88 105-193 76-172 (434)
31 KOG1572 Predicted protein tyro 98.1 2.6E-05 5.5E-10 68.3 10.0 114 3-170 61-183 (249)
32 PHA02746 protein tyrosine phos 98.1 3.1E-05 6.7E-10 71.4 11.0 23 135-157 248-270 (323)
33 PHA02740 protein tyrosine phos 98.1 3.2E-05 7E-10 70.5 10.8 24 135-158 222-245 (298)
34 PHA02747 protein tyrosine phos 98.0 3E-05 6.5E-10 71.1 10.0 24 135-158 230-253 (312)
35 PF04179 Init_tRNA_PT: Initiat 98.0 5.4E-05 1.2E-09 72.7 11.4 106 101-247 338-449 (451)
36 PHA02738 hypothetical protein; 97.9 9.5E-05 2.1E-09 68.1 11.1 44 135-178 228-276 (320)
37 KOG0792 Protein tyrosine phosp 97.7 0.00015 3.2E-09 74.6 8.7 49 110-158 1037-1087(1144)
38 COG5599 PTP2 Protein tyrosine 97.6 0.00012 2.5E-09 65.3 5.7 55 101-159 184-243 (302)
39 KOG2386 mRNA capping enzyme, g 97.5 0.00014 3.1E-09 68.3 5.6 87 98-184 83-175 (393)
40 KOG0790 Protein tyrosine phosp 97.4 0.00015 3.3E-09 68.6 4.3 54 104-157 417-475 (600)
41 COG2365 Protein tyrosine/serin 97.3 0.0015 3.2E-08 58.2 9.1 71 122-192 122-194 (249)
42 KOG0789 Protein tyrosine phosp 96.8 0.0053 1.2E-07 57.6 8.8 44 134-177 299-348 (415)
43 KOG0791 Protein tyrosine phosp 96.5 0.013 2.9E-07 54.4 8.2 52 106-157 257-310 (374)
44 KOG0793 Protein tyrosine phosp 95.1 0.087 1.9E-06 52.9 8.0 51 104-154 895-947 (1004)
45 PF14671 DSPn: Dual specificit 95.1 0.066 1.4E-06 43.8 6.0 65 110-175 39-111 (141)
46 KOG4228 Protein tyrosine phosp 94.4 0.021 4.6E-07 59.5 2.0 42 108-152 702-748 (1087)
47 KOG4228 Protein tyrosine phosp 93.7 0.1 2.2E-06 54.7 5.3 38 121-158 1005-1042(1087)
48 KOG4471 Phosphatidylinositol 3 92.4 0.26 5.6E-06 48.7 5.6 32 127-158 365-399 (717)
49 PF06602 Myotub-related: Myotu 86.6 1.6 3.6E-05 40.8 6.0 21 133-153 229-250 (353)
50 KOG1089 Myotubularin-related p 83.6 2.2 4.9E-05 42.2 5.6 34 125-158 333-369 (573)
51 cd01518 RHOD_YceA Member of th 79.7 12 0.00027 27.6 7.4 25 136-163 63-87 (101)
52 PRK01415 hypothetical protein; 75.9 7.3 0.00016 34.7 5.9 26 135-163 172-197 (247)
53 PLN02160 thiosulfate sulfurtra 69.4 9.8 0.00021 30.4 4.7 28 133-163 79-107 (136)
54 cd01533 4RHOD_Repeat_2 Member 65.6 17 0.00036 27.3 5.1 25 136-163 68-92 (109)
55 COG0607 PspE Rhodanese-related 64.0 7 0.00015 28.9 2.8 26 132-159 58-84 (110)
56 PRK00142 putative rhodanese-re 63.3 20 0.00043 33.0 6.0 26 135-163 172-197 (314)
57 PF03668 ATP_bind_2: P-loop AT 62.4 16 0.00035 33.3 5.2 16 137-152 245-260 (284)
58 COG4738 Predicted transcriptio 61.1 12 0.00026 29.6 3.5 37 142-179 22-59 (124)
59 PRK05416 glmZ(sRNA)-inactivati 59.5 18 0.00039 32.9 5.0 33 120-152 223-263 (288)
60 TIGR03865 PQQ_CXXCW PQQ-depend 59.4 26 0.00057 28.8 5.6 26 136-163 118-143 (162)
61 PF00581 Rhodanese: Rhodanese- 58.3 69 0.0015 23.3 9.6 58 105-163 34-98 (113)
62 cd01520 RHOD_YbbB Member of th 55.9 31 0.00068 26.8 5.3 29 133-163 84-113 (128)
63 cd01523 RHOD_Lact_B Member of 55.3 20 0.00044 26.3 4.0 25 136-163 63-87 (100)
64 cd01528 RHOD_2 Member of the R 52.8 37 0.00081 24.9 5.1 25 136-163 60-84 (101)
65 COG1660 Predicted P-loop-conta 52.7 25 0.00053 31.9 4.6 20 133-152 238-261 (286)
66 cd01448 TST_Repeat_1 Thiosulfa 51.0 34 0.00074 26.0 4.7 28 134-163 78-106 (122)
67 COG1054 Predicted sulfurtransf 49.7 1E+02 0.0022 28.5 8.1 35 121-157 156-193 (308)
68 cd01443 Cdc25_Acr2p Cdc25 enzy 48.0 1.1E+02 0.0023 23.0 7.1 17 136-152 68-84 (113)
69 cd01317 DHOase_IIa Dihydroorot 47.9 1.4E+02 0.003 27.6 9.2 36 1-36 13-54 (374)
70 cd01531 Acr2p Eukaryotic arsen 46.9 93 0.002 23.3 6.6 20 135-154 63-82 (113)
71 cd01532 4RHOD_Repeat_1 Member 46.8 32 0.00069 25.0 3.8 28 135-163 51-78 (92)
72 smart00400 ZnF_CHCC zinc finge 46.3 23 0.0005 23.6 2.7 32 138-171 23-54 (55)
73 cd01522 RHOD_1 Member of the R 43.6 44 0.00095 25.5 4.3 24 136-162 66-89 (117)
74 PF02571 CbiJ: Precorrin-6x re 41.0 46 0.00099 29.6 4.5 29 8-36 46-75 (249)
75 PRK05772 translation initiatio 40.0 58 0.0013 30.8 5.2 32 133-164 165-202 (363)
76 TIGR03642 cas_csx13 CRISPR-ass 39.9 94 0.002 24.8 5.7 61 101-161 53-116 (124)
77 PRK05320 rhodanese superfamily 39.7 46 0.001 29.7 4.3 25 136-163 177-201 (257)
78 cd01444 GlpE_ST GlpE sulfurtra 38.7 61 0.0013 23.1 4.3 27 134-163 55-82 (96)
79 PF10302 DUF2407: DUF2407 ubiq 38.6 16 0.00035 27.8 1.1 9 136-144 87-95 (97)
80 COG1831 Predicted metal-depend 36.6 1.9E+02 0.0041 26.4 7.6 72 98-173 32-108 (285)
81 PRK08334 translation initiatio 36.5 62 0.0013 30.5 4.8 29 134-162 160-192 (356)
82 cd00127 DSPc Dual specificity 36.1 22 0.00047 27.5 1.5 23 170-192 117-139 (139)
83 PF01807 zf-CHC2: CHC2 zinc fi 35.8 36 0.00078 25.6 2.6 35 138-174 54-88 (97)
84 TIGR00853 pts-lac PTS system, 35.6 29 0.00062 26.1 2.0 17 135-152 4-20 (95)
85 PF02673 BacA: Bacitracin resi 34.4 42 0.0009 30.1 3.2 31 142-174 159-189 (259)
86 PRK06036 translation initiatio 34.4 74 0.0016 29.7 4.9 17 133-149 146-163 (339)
87 PF09419 PGP_phosphatase: Mito 33.8 27 0.00058 29.3 1.7 31 2-33 14-46 (168)
88 PF03861 ANTAR: ANTAR domain; 33.4 66 0.0014 21.5 3.4 26 149-174 15-40 (56)
89 cd06571 Bac_DnaA_C C-terminal 33.2 93 0.002 22.8 4.5 25 150-174 32-57 (90)
90 TIGR00512 salvage_mtnA S-methy 33.0 85 0.0019 29.2 5.1 9 136-144 149-157 (331)
91 PRK08057 cobalt-precorrin-6x r 32.9 92 0.002 27.7 5.1 28 9-36 46-74 (248)
92 cd01534 4RHOD_Repeat_3 Member 32.7 51 0.0011 23.9 3.0 25 136-163 58-82 (95)
93 cd05567 PTS_IIB_mannitol PTS_I 32.3 45 0.00098 24.2 2.6 18 135-152 1-18 (87)
94 PRK12554 undecaprenyl pyrophos 32.0 45 0.00097 30.2 3.0 27 143-171 166-192 (276)
95 TIGR00753 undec_PP_bacA undeca 30.8 49 0.0011 29.6 3.0 26 143-170 160-185 (255)
96 PRK05728 DNA polymerase III su 30.6 95 0.0021 25.0 4.4 25 120-144 14-39 (142)
97 PRK10886 DnaA initiator-associ 29.7 1.2E+02 0.0026 25.9 5.1 35 118-155 24-59 (196)
98 PRK00162 glpE thiosulfate sulf 29.6 1.3E+02 0.0028 22.2 4.8 27 134-163 58-84 (108)
99 COG0794 GutQ Predicted sugar p 29.5 1.1E+02 0.0025 26.4 4.9 35 121-160 28-62 (202)
100 cd01447 Polysulfide_ST Polysul 29.4 64 0.0014 23.3 3.1 28 133-163 59-87 (103)
101 PRK00281 undecaprenyl pyrophos 29.1 55 0.0012 29.5 3.1 27 142-170 163-189 (268)
102 PRK11493 sseA 3-mercaptopyruva 29.0 44 0.00096 29.8 2.5 25 136-163 233-257 (281)
103 cd01525 RHOD_Kc Member of the 28.8 73 0.0016 23.2 3.3 25 136-163 67-91 (105)
104 TIGR02981 phageshock_pspE phag 28.7 1.5E+02 0.0032 22.3 5.0 25 136-163 60-84 (101)
105 TIGR03167 tRNA_sel_U_synt tRNA 28.6 1.3E+02 0.0028 27.7 5.4 26 136-163 76-101 (311)
106 PF04364 DNA_pol3_chi: DNA pol 28.5 96 0.0021 24.8 4.1 23 121-143 15-38 (137)
107 cd01526 RHOD_ThiF Member of th 28.4 64 0.0014 24.7 3.0 24 136-162 74-97 (122)
108 cd01529 4RHOD_Repeats Member o 28.0 78 0.0017 22.9 3.3 25 136-163 58-82 (96)
109 cd01530 Cdc25 Cdc25 phosphatas 28.0 63 0.0014 25.0 2.9 21 136-158 70-91 (121)
110 PRK05720 mtnA methylthioribose 27.9 1.2E+02 0.0027 28.3 5.3 30 133-162 145-179 (344)
111 KOG0235 Phosphoglycerate mutas 27.7 2.7E+02 0.0058 24.3 7.0 46 114-165 131-181 (214)
112 PHA02540 61 DNA primase; Provi 26.9 1.1E+02 0.0023 28.7 4.6 38 135-175 52-90 (337)
113 PF03807 F420_oxidored: NADP o 26.5 93 0.002 22.4 3.5 23 121-144 74-96 (96)
114 PF04343 DUF488: Protein of un 26.4 3E+02 0.0065 21.1 6.5 16 21-36 7-22 (122)
115 smart00195 DSPc Dual specifici 26.0 42 0.00091 26.1 1.6 23 171-193 115-137 (138)
116 COG2927 HolC DNA polymerase II 25.9 61 0.0013 26.6 2.5 21 123-143 17-38 (144)
117 cd01519 RHOD_HSP67B2 Member of 25.8 99 0.0021 22.5 3.6 25 136-163 68-92 (106)
118 PF00782 DSPc: Dual specificit 25.3 44 0.00096 25.6 1.6 24 170-193 109-132 (133)
119 cd01527 RHOD_YgaP Member of th 24.4 85 0.0018 22.7 2.9 14 136-150 56-69 (99)
120 PRK07411 hypothetical protein; 23.4 1.1E+02 0.0023 29.1 4.0 27 134-163 342-368 (390)
121 PF05763 DUF835: Protein of un 23.4 2.8E+02 0.0061 22.2 6.0 47 116-177 59-106 (136)
122 PRK10287 thiosulfate:cyanide s 23.1 1.5E+02 0.0033 22.4 4.2 16 136-152 62-77 (104)
123 PRK13352 thiamine biosynthesis 22.7 1.3E+02 0.0029 28.9 4.4 49 123-171 144-211 (431)
124 PF10727 Rossmann-like: Rossma 22.0 74 0.0016 25.3 2.3 28 121-148 81-110 (127)
125 PF09623 Cas_NE0113: CRISPR-as 21.7 1.9E+02 0.0042 25.3 5.0 59 107-165 82-142 (224)
126 PRK09590 celB cellobiose phosp 20.8 80 0.0017 24.2 2.2 13 136-148 3-15 (104)
127 cd08307 Death_Pelle Death doma 20.5 2.2E+02 0.0047 21.7 4.5 33 145-177 48-80 (97)
128 PF02302 PTS_IIB: PTS system, 20.3 63 0.0014 23.1 1.5 16 136-151 1-16 (90)
129 COG2897 SseA Rhodanese-related 20.2 79 0.0017 28.8 2.3 19 132-150 231-250 (285)
130 PRK11784 tRNA 2-selenouridine 20.2 2E+02 0.0044 26.8 5.1 26 136-163 90-115 (345)
131 TIGR00190 thiC thiamine biosyn 20.1 1.7E+02 0.0036 28.2 4.5 50 122-171 140-208 (423)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=1.5e-32 Score=221.30 Aligned_cols=136 Identities=34% Similarity=0.502 Sum_probs=123.8
Q ss_pred CceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 025490 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (252)
Q Consensus 2 P~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (252)
|++|.|+||+|+.+++.+.+.|+++||++|||++.+...
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~----------------------------------------- 39 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN----------------------------------------- 39 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC-----------------------------------------
Confidence 899999999999999999999999999999999873200
Q ss_pred CCCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHHc
Q 025490 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (252)
Q Consensus 82 ~~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~~ 160 (252)
....++.|+++|+.|....++.+.++++++||+.+.++| +|||||.+|+|||+++++||||...
T Consensus 40 ---------------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 40 ---------------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred ---------------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 012368899999999777788899999999999999887 4999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhH
Q 025490 161 QLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGF 240 (252)
Q Consensus 161 ~~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f 240 (252)
||+++ +|++.|+.+||.+.||.+|
T Consensus 105 ~~~~~--------------------------------------------------------~A~~~v~~~R~~~~p~~~~ 128 (138)
T smart00195 105 NLSLN--------------------------------------------------------DAYDFVKDRRPIISPNFGF 128 (138)
T ss_pred CCCHH--------------------------------------------------------HHHHHHHHHCCccCCCHhH
Confidence 99999 9999999999999999999
Q ss_pred HHHHHHHHH
Q 025490 241 LEQVILIIV 249 (252)
Q Consensus 241 ~~ql~~~~~ 249 (252)
++||.+||+
T Consensus 129 ~~qL~~~e~ 137 (138)
T smart00195 129 LRQLIEYER 137 (138)
T ss_pred HHHHHHHhh
Confidence 999999986
No 2
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=1.6e-32 Score=225.48 Aligned_cols=137 Identities=31% Similarity=0.385 Sum_probs=124.3
Q ss_pred ceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 025490 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (252)
Q Consensus 3 ~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (252)
++|+++|||++-..|.+...|++++||+|||++.+. |
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~--------------p----------------------------- 54 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV--------------P----------------------------- 54 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------C-----------------------------
Confidence 689999999988888999999999999999999742 1
Q ss_pred CCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHHcC
Q 025490 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (252)
Q Consensus 83 ~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~~~ 161 (252)
+. .-.+++|..+|+.|.+...+.++|+.+.+.|+....+| ++||||.||+|||+++|+||||++.+
T Consensus 55 ----n~---------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 55 ----NT---------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred ----Cc---------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 10 01257799999999999999999999999999998765 59999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhHH
Q 025490 162 LSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFL 241 (252)
Q Consensus 162 ~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f~ 241 (252)
|++. +|+.|++.+||++.||.||+
T Consensus 122 msLr--------------------------------------------------------eAy~~vKa~RpiIRPN~GFw 145 (198)
T KOG1718|consen 122 MSLR--------------------------------------------------------EAYHWVKARRPIIRPNVGFW 145 (198)
T ss_pred chHH--------------------------------------------------------HHHHHHHhhCceeCCCccHH
Confidence 9999 99999999999999999999
Q ss_pred HHHHHHHHHh
Q 025490 242 EQVILIIVER 251 (252)
Q Consensus 242 ~ql~~~~~~~ 251 (252)
+||+.||+.-
T Consensus 146 ~QLi~YE~qL 155 (198)
T KOG1718|consen 146 RQLIDYEQQL 155 (198)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 3
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.4e-31 Score=231.37 Aligned_cols=140 Identities=28% Similarity=0.501 Sum_probs=127.8
Q ss_pred CCceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCC
Q 025490 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (252)
Q Consensus 1 ~P~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
.|.||+|+||||+..++.+.+.|++.||++||||+...
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl------------------------------------------ 208 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL------------------------------------------ 208 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC------------------------------------------
Confidence 38999999999999999999999999999999998721
Q ss_pred CCCCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHH
Q 025490 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (252)
Q Consensus 81 ~~~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~ 159 (252)
|..| +.+..+.|..||+.|....++.+.|++|+.||++++.+. +|||||.+|+|||+|+++||||.+
T Consensus 209 -----pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 209 -----PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred -----cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 1111 134568899999999999999999999999999999988 699999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChh
Q 025490 160 EQLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDG 239 (252)
Q Consensus 160 ~~~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~ 239 (252)
..++++ +|+++|+.++..|.||.+
T Consensus 277 l~lsln--------------------------------------------------------dAyd~Vk~kksnisPNFn 300 (343)
T KOG1717|consen 277 LNLSLN--------------------------------------------------------DAYDFVKHKKSNISPNFN 300 (343)
T ss_pred hccchh--------------------------------------------------------hHHHHHHHhccCCCCCcc
Confidence 999999 999999999999999999
Q ss_pred HHHHHHHHHHH
Q 025490 240 FLEQVILIIVE 250 (252)
Q Consensus 240 f~~ql~~~~~~ 250 (252)
|+-||.+||+-
T Consensus 301 FMgQLldfert 311 (343)
T KOG1717|consen 301 FMGQLLDFERT 311 (343)
T ss_pred hhHHHHHHHHH
Confidence 99999999974
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=1.1e-29 Score=229.10 Aligned_cols=140 Identities=34% Similarity=0.485 Sum_probs=126.0
Q ss_pred CceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 025490 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (252)
Q Consensus 2 P~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (252)
+++|.|+||+|+..++.+...|++.||+||+|+..+....
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~---------------------------------------- 114 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNP---------------------------------------- 114 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCcc----------------------------------------
Confidence 4689999999999999999999999999999999843100
Q ss_pred CCCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHHc
Q 025490 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (252)
Q Consensus 82 ~~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~~ 160 (252)
. + ....++.|+++|+.|.+..++..+|+++++||+.+.++| +|||||.+|+|||+++++||||+++
T Consensus 115 -----~-~-------~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 115 -----R-F-------LKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred -----c-c-------ccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 0 0 012268899999999999999999999999999999977 5999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhH
Q 025490 161 QLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGF 240 (252)
Q Consensus 161 ~~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f 240 (252)
+|+++ +|+++|+.+|+.++||.||
T Consensus 182 ~~~l~--------------------------------------------------------~A~~~vk~~R~~i~PN~gf 205 (285)
T KOG1716|consen 182 GLSLE--------------------------------------------------------DAYELVKSRRPIISPNFGF 205 (285)
T ss_pred CCCHH--------------------------------------------------------HHHHHHHHhCCccCCCHHH
Confidence 99999 9999999999999999999
Q ss_pred HHHHHHHHHH
Q 025490 241 LEQVILIIVE 250 (252)
Q Consensus 241 ~~ql~~~~~~ 250 (252)
+.||.+|++.
T Consensus 206 ~~QL~~~e~~ 215 (285)
T KOG1716|consen 206 LRQLLEFEKR 215 (285)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=2.4e-29 Score=201.79 Aligned_cols=137 Identities=35% Similarity=0.478 Sum_probs=122.9
Q ss_pred CceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 025490 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (252)
Q Consensus 2 P~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (252)
+++|.|+||+|+.+++.|.+.|++.||++|||++.+...
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----------------------------------------- 40 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----------------------------------------- 40 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC-----------------------------------------
Confidence 689999999999999999999999999999999983210
Q ss_pred CCCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHHc
Q 025490 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (252)
Q Consensus 82 ~~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~~ 160 (252)
......++.|.++|+.|....++...++.+++||+...++| +|||||.+|.|||++++++|||...
T Consensus 41 -------------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 41 -------------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred -------------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 00123478899999999988888888999999999999877 5999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhH
Q 025490 161 QLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGF 240 (252)
Q Consensus 161 ~~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f 240 (252)
+|+++ +|++.|+..||.+.||.+|
T Consensus 108 ~~~~~--------------------------------------------------------~a~~~vr~~r~~~~~~~~~ 131 (139)
T cd00127 108 GLSLR--------------------------------------------------------EAYEFVKSRRPIISPNAGF 131 (139)
T ss_pred CCCHH--------------------------------------------------------HHHHHHHHHCCccCCCHHH
Confidence 99999 9999999999999999999
Q ss_pred HHHHHHHH
Q 025490 241 LEQVILII 248 (252)
Q Consensus 241 ~~ql~~~~ 248 (252)
+.||++||
T Consensus 132 ~~~l~~~~ 139 (139)
T cd00127 132 MRQLKEYE 139 (139)
T ss_pred HHHHHHhC
Confidence 99999996
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=1.9e-29 Score=201.62 Aligned_cols=132 Identities=34% Similarity=0.523 Sum_probs=117.9
Q ss_pred eeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 025490 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (252)
Q Consensus 9 LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 88 (252)
||||+.+++. ...|+++||++|||++.+... +
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~---------------------------------------------~-- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN---------------------------------------------P-- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST---------------------------------------------S--
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC---------------------------------------------c--
Confidence 7999999999 999999999999999984210 0
Q ss_pred hhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHHcCCCHHHH
Q 025490 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGL 167 (252)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA 167 (252)
......++.|+++|+.|....++.+.++.+++||+++.++| +|||||.+|+|||+++++||||...+|+++
T Consensus 33 ------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~-- 104 (133)
T PF00782_consen 33 ------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLE-- 104 (133)
T ss_dssp ------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHH--
T ss_pred ------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHH--
Confidence 01134578899999999888888999999999999999876 599999999999999999999999999999
Q ss_pred HHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhHHHHHHHH
Q 025490 168 NKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQVILI 247 (252)
Q Consensus 168 ~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f~~ql~~~ 247 (252)
+|++.+++.||.+.||.+|++||.+|
T Consensus 105 ------------------------------------------------------~A~~~v~~~rp~~~~~~~~~~~L~~~ 130 (133)
T PF00782_consen 105 ------------------------------------------------------EAIEYVRSRRPQINPNPSFIRQLYEY 130 (133)
T ss_dssp ------------------------------------------------------HHHHHHHHHSTTSTHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999999
Q ss_pred HHH
Q 025490 248 IVE 250 (252)
Q Consensus 248 ~~~ 250 (252)
|+.
T Consensus 131 e~~ 133 (133)
T PF00782_consen 131 EKK 133 (133)
T ss_dssp HHH
T ss_pred hcC
Confidence 974
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.93 E-value=3.9e-25 Score=215.49 Aligned_cols=142 Identities=24% Similarity=0.334 Sum_probs=118.3
Q ss_pred CceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 025490 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (252)
Q Consensus 2 P~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (252)
+++|.|+||||+...+.|.+.|++.||++|||++.+...
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~----------------------------------------- 133 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDG----------------------------------------- 133 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccc-----------------------------------------
Confidence 478999999999999999999999999999999864210
Q ss_pred CCCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHH-
Q 025490 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (252)
Q Consensus 82 ~~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~- 159 (252)
.+. .....++.|+++|+.|...++. +.++++++||++++++| +|||||.+|+|||+++++||||.+
T Consensus 134 ---~~~--------~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 134 ---LDW--------SLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred ---ccc--------cccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 000 0012368899999999877664 66999999999999876 599999999999999999999976
Q ss_pred cCCCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChh
Q 025490 160 EQLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDG 239 (252)
Q Consensus 160 ~~~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~ 239 (252)
.+++++ +|++.|+++||.+.||++
T Consensus 202 ~~~~~~--------------------------------------------------------eA~~~vr~~Rp~v~~n~~ 225 (547)
T PRK12361 202 PDLTVE--------------------------------------------------------EVLQQIKQIRKTARLNKR 225 (547)
T ss_pred cCCCHH--------------------------------------------------------HHHHHHHHHCCCCCCCHH
Confidence 589999 888888888888888888
Q ss_pred HHHHHHHHHHHhC
Q 025490 240 FLEQVILIIVERK 252 (252)
Q Consensus 240 f~~ql~~~~~~~~ 252 (252)
++++|..|.++++
T Consensus 226 q~~~l~~~~~~~~ 238 (547)
T PRK12361 226 QLRALEKMLEQGK 238 (547)
T ss_pred HHHHHHHHHHcCC
Confidence 8888888877654
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.84 E-value=3.9e-20 Score=154.79 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=78.3
Q ss_pred cceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhC----C-cEEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 025490 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSL 174 (252)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~----G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~ 174 (252)
.++.++++|+.|...++.. .+.+.++++++.++. | +|+|||.+|+|||++++++|||...+++++
T Consensus 60 ~gi~~~~~p~~D~~~P~~~-~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~--------- 129 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPPPKA-VIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPL--------- 129 (166)
T ss_pred CCCEEEecCCCCCCCCCHH-HHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHH---------
Confidence 4789999999998766543 467778888877643 5 599999999999999999999999889999
Q ss_pred cccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhHHHHHHHHHHHhC
Q 025490 175 EYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQVILIIVERK 252 (252)
Q Consensus 175 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f~~ql~~~~~~~~ 252 (252)
+|++.+++.||.. .|..++.+|.+|++..|
T Consensus 130 -----------------------------------------------eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 130 -----------------------------------------------DAVGFVREKRKGA-INQTQLQFLKKYKPRKK 159 (166)
T ss_pred -----------------------------------------------HHHHHHHHHCCCC-chHHHHHHHHHHHHHhc
Confidence 8888888888864 47888888888876543
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.84 E-value=2.2e-20 Score=152.00 Aligned_cols=141 Identities=21% Similarity=0.387 Sum_probs=112.8
Q ss_pred eeecCeeecChhch-hhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 025490 4 LVREHLFIGNISDA-ADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (252)
Q Consensus 4 ~I~~~LylGs~~~a-~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (252)
+|.+++-+|-.+-. .|...+++.|+..||.+.++-+. .
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~----------~------------------------------- 65 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYEL----------L------------------------------- 65 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhh----------h-------------------------------
Confidence 46677777766543 57788999999999999873211 0
Q ss_pred CCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCc-EEEecCCCCChhHHHHHHHHHHHcC
Q 025490 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQ 161 (252)
Q Consensus 83 ~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~ayLm~~~~ 161 (252)
.|.. .| +..+++++.+|..|....+-.+.+.++++||++....|+ |||||.||.+||+|+++||||...+
T Consensus 66 --a~s~-~w------k~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 66 --APSN-LW------KNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred --hhhH-HH------HhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 1111 12 456899999999998666656669999999999999997 9999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhHH
Q 025490 162 LSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFL 241 (252)
Q Consensus 162 ~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f~ 241 (252)
|+++ +|++.++++||.+-..++.+
T Consensus 137 wtpe--------------------------------------------------------~A~~~vr~iRp~VlL~~~Qw 160 (183)
T KOG1719|consen 137 WTPE--------------------------------------------------------AAVEHVRKIRPRVLLRPAQW 160 (183)
T ss_pred CCHH--------------------------------------------------------HHHHHHHhcCcceeecHHHH
Confidence 9999 78888888888877777888
Q ss_pred HHHHHHHHH
Q 025490 242 EQVILIIVE 250 (252)
Q Consensus 242 ~ql~~~~~~ 250 (252)
+-|.+|.+.
T Consensus 161 ~~l~ef~~~ 169 (183)
T KOG1719|consen 161 DVLKEFYKQ 169 (183)
T ss_pred HHHHHHHHH
Confidence 887777653
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.82 E-value=1.8e-19 Score=157.52 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=81.5
Q ss_pred CcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCc-EEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 025490 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYY 177 (252)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r~~ 177 (252)
..+|.++++|+.|...++. +.++++++++++.++.|+ |+|||.+|+|||++++++|||. .||+++
T Consensus 135 ~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~Gmspe------------ 200 (241)
T PTZ00393 135 SAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPI------------ 200 (241)
T ss_pred HcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHH------------
Confidence 4589999999999987764 457888999998888775 9999999999999999999997 699999
Q ss_pred ccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhHHHHHHHHHHHh
Q 025490 178 ESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQVILIIVER 251 (252)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f~~ql~~~~~~~ 251 (252)
+|+++||+.||.+ .|..+++.|..|++..
T Consensus 201 --------------------------------------------eAI~~VR~~RPgA-In~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 201 --------------------------------------------DAIVFIRDRRKGA-INKRQLQFLKAYKKKK 229 (241)
T ss_pred --------------------------------------------HHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Confidence 8999999999876 5888888998888753
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.66 E-value=8.4e-16 Score=130.07 Aligned_cols=67 Identities=33% Similarity=0.537 Sum_probs=59.7
Q ss_pred cCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHHHcC-CCHH
Q 025490 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ-LSSE 165 (252)
Q Consensus 98 ~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~~~~-~s~~ 165 (252)
...++.++++|+.|...+++ ..+++++++|+++.++| +|+|||.+|+|||+|+++||||.+.+ +..+
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~ 137 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLAD 137 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHH
Confidence 45688899999999999988 55999999999999998 59999999999999999999999954 4566
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.63 E-value=5.8e-15 Score=125.90 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=74.3
Q ss_pred cCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 025490 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYY 177 (252)
Q Consensus 98 ~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r~~ 177 (252)
.+.||.++++|+.|...++... +.+.++.++.+.+.|+|.|||.+|.|||+++++||||+.+|++..||+..|+..||.
T Consensus 112 ~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG 190 (225)
T KOG1720|consen 112 TDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPG 190 (225)
T ss_pred cccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCc
Confidence 3468999999999999888555 667777778888855799999999999999999999999999999777777777766
Q ss_pred ccchhhhhhhhchhh
Q 025490 178 ESTQSYCLFLSDEYE 192 (252)
Q Consensus 178 ~~~~~~~~~~~~~~~ 192 (252)
.-+.......+.++.
T Consensus 191 ~V~gpqQ~~l~~~q~ 205 (225)
T KOG1720|consen 191 AVIGPQQHKLLHKQR 205 (225)
T ss_pred cccCHHHHHHHHHHH
Confidence 555554443333333
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.49 E-value=2.2e-13 Score=113.23 Aligned_cols=106 Identities=20% Similarity=0.306 Sum_probs=66.7
Q ss_pred hhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhh
Q 025490 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (252)
Q Consensus 17 a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 96 (252)
..|++.|+..|++.||.+.+. .|+....+.+ +-..
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~-----------------~EL~~l~Vp~----------------------------L~~~ 95 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTD-----------------HELARLGVPD----------------------------LGEA 95 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-H-----------------HHHHHTT-TT----------------------------HHHH
T ss_pred HHHHHHHHHCCCCEEEEeCcH-----------------HHHHHcCCcc----------------------------HHHH
Confidence 567889999999999999873 3444433221 1111
Q ss_pred ccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCc-EEEecCCCCChhHHHHHHHHHHHc-CCCHHHHH
Q 025490 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTE-QLSSEGLN 168 (252)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~ayLm~~~-~~s~~eA~ 168 (252)
....++.++|+||.|...+++...+ ++++.|...+++|+ |+|||.+|.|||+++++++|+.-. .+++++|+
T Consensus 96 ~~~~Gi~~~h~PI~D~~aPd~~~~~-~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 96 AQARGIAWHHLPIPDGSAPDFAAAW-QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHTT-EEEE----TTS---HHHHH-HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHcCCEEEecCccCCCCCCHHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 2345899999999999998876544 67788888888885 999999999999999999988753 57888664
No 14
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.38 E-value=8.7e-12 Score=100.89 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=87.2
Q ss_pred ceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 025490 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (252)
Q Consensus 3 ~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (252)
.+|.+.+|+++.....|.+.|++.||+.|||+....+..
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~----------------------------------------- 41 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEE----------------------------------------- 41 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCC-----------------------------------------
Confidence 589999999999999999999999999999998732100
Q ss_pred CCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHHHcCC
Q 025490 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (252)
Q Consensus 83 ~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~~~~~ 162 (252)
..|.. ..........++.|+++|+..... + ........++++. ..|+||+||.+|. ||+++.+.++.. .|+
T Consensus 42 -~~p~~--~~~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~ 112 (135)
T TIGR01244 42 -SQPDF--AQIKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQAA-EGV 112 (135)
T ss_pred -CCCCH--HHHHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHHH-cCC
Confidence 01110 011111123589999999875432 2 1112233333432 2467999999999 998887666655 699
Q ss_pred CHHHHHHHHHhhccccc
Q 025490 163 SSEGLNKFIFSLEYYES 179 (252)
Q Consensus 163 s~~eA~~~v~~~r~~~~ 179 (252)
+.+++++..+..-+...
T Consensus 113 ~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 113 PVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999987766543
No 15
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.37 E-value=3.2e-12 Score=106.80 Aligned_cols=119 Identities=11% Similarity=0.154 Sum_probs=73.3
Q ss_pred ceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 025490 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (252)
Q Consensus 3 ~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (252)
+.|.++||-|+.+.+.+...|+++||++|||++.+..
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~------------------------------------------- 44 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPP------------------------------------------- 44 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---------------------------------------------
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCC-------------------------------------------
Confidence 3688999999999999999999999999999997420
Q ss_pred CCCCchhhhhhhhhccCcceEEEEEecCCCCCC---cHHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHHH
Q 025490 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESE---NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (252)
Q Consensus 83 ~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~---~l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~~ 159 (252)
+.. ... ..+..++.+.++++.....+ -..+.+.++++.|-+. ++.+|||||..|..||++++++|- +.
T Consensus 45 ---~~~---~~~-f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~ 115 (164)
T PF03162_consen 45 ---SQD---FLE-FAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KL 115 (164)
T ss_dssp ----HH---HHH-HHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HH
T ss_pred ---CHH---HHH-HHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HH
Confidence 000 011 12345788899998765431 1223344555544222 245799999999999999999999 67
Q ss_pred cCCCHHHHHHHHHh
Q 025490 160 EQLSSEGLNKFIFS 173 (252)
Q Consensus 160 ~~~s~~eA~~~v~~ 173 (252)
+||++.+|++..+.
T Consensus 116 Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 116 QGWSLSSIFDEYRR 129 (164)
T ss_dssp TTB-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 89999999988873
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.23 E-value=1.9e-10 Score=92.14 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=58.1
Q ss_pred cceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhh--CCc-EEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 025490 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEY 176 (252)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~G~-VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r~ 176 (252)
.||..+.+|.+|...++ .+..++..+.+....+ .|. |.|||.+|+||++.+++..|+.. ||..++|+++++++|-
T Consensus 61 ~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr 138 (173)
T KOG2836|consen 61 EGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR 138 (173)
T ss_pred cCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh
Confidence 47889999999986544 4445566666655554 355 99999999999999998888876 9999977777776663
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.14 E-value=2.7e-10 Score=89.19 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=57.2
Q ss_pred ceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 025490 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (252)
Q Consensus 3 ~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (252)
.+|.+.+|++++....+++.|++.|+++|||+....+.
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~------------------------------------------ 40 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEE------------------------------------------ 40 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTST------------------------------------------
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCC------------------------------------------
Confidence 47999999999999999999999999999999863210
Q ss_pred CCCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHH
Q 025490 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITA 154 (252)
Q Consensus 83 ~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~a 154 (252)
+-.|. ...++......|+.|.++|+..... + ...+....+.+++. .|+||+||..|. ||+++.+.
T Consensus 41 ~~qp~--~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~~~v~~f~~~l~~~--~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 41 PGQPS--SAEEAAAAEALGLQYVHIPVDGGAI-T-EEDVEAFADALESL--PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp TT-T---HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHHHHHTT--TTSEEEE-SCSH-HHHHHHHH
T ss_pred CCCCC--HHHHHHHHHHcCCeEEEeecCCCCC-C-HHHHHHHHHHHHhC--CCCEEEECCCCh-hHHHHHHH
Confidence 00011 1123334456799999999986432 2 22233333333321 457999999999 98766543
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.09 E-value=1.5e-09 Score=81.79 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHHhh----CCcEEEecCCCCChhHHHHHHHHHHHc
Q 025490 104 RMTVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (252)
Q Consensus 104 ~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~----~G~VLVHC~aG~sRS~~lv~ayLm~~~ 160 (252)
+.+.++.|...++....+.+.++.++.... +|+|+|||.+|.|||++++++|++...
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~ 65 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQ 65 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHH
Confidence 344455565555444445566666665553 457999999999999999999998763
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.09 E-value=1.5e-09 Score=81.79 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHHhh----CCcEEEecCCCCChhHHHHHHHHHHHc
Q 025490 104 RMTVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (252)
Q Consensus 104 ~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~----~G~VLVHC~aG~sRS~~lv~ayLm~~~ 160 (252)
+.+.++.|...++....+.+.++.++.... +|+|+|||.+|.|||++++++|++...
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~ 65 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQ 65 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHH
Confidence 344455565555444445566666665553 457999999999999999999998763
No 20
>PLN02727 NAD kinase
Probab=98.94 E-value=5.7e-09 Score=105.56 Aligned_cols=108 Identities=8% Similarity=0.100 Sum_probs=78.2
Q ss_pred CeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025490 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (252)
Q Consensus 8 ~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 87 (252)
.+|+|++..+.++++|.+.||++|||+..+.+. + .+.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~---~----------------------------------------q~~ 298 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVK---D----------------------------------------NFY 298 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcC---C----------------------------------------Cch
Confidence 489999999999999999999999999873210 0 000
Q ss_pred hhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHHHcCC
Q 025490 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (252)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~~~~~ 162 (252)
...++.+....+++|+++|+.+...++..+ +.++.+++++ ...++||+||..|..|+++++++|+.+.-+.
T Consensus 299 --~~ee~eAae~~GL~yVhIPVs~~~apt~Eq-Ve~fa~~l~~-slpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 299 --QAAVDDAISSGKIEVVKIPVEVRTAPSAEQ-VEKFASLVSD-SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred --hHHHHHHHHHcCCeEEEeecCCCCCCCHHH-HHHHHHHHHh-hcCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 112334455679999999998766555333 4455555533 1245799999999999999999999876554
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.82 E-value=3.7e-08 Score=85.71 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=42.7
Q ss_pred cceEEEEEe-cCCCCCCcHHHHHHHHHHHHHHHhh---CCcEEEecCCCCChhHHHHHHHHHHHc-----CCCHH
Q 025490 100 LKLVRMTVP-IRDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRTE-----QLSSE 165 (252)
Q Consensus 100 ~~i~~l~ip-i~D~~~~~l~~~~~~~~~fI~~~~~---~G~VLVHC~aG~sRS~~lv~ayLm~~~-----~~s~~ 165 (252)
..+.++++. +.|...++....+.+.+..++.... .++|+|||.+|+|||+++++++++... ..++.
T Consensus 128 ~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~ 202 (231)
T cd00047 128 RTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIF 202 (231)
T ss_pred eEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHH
Confidence 455555543 3454444433445555556655543 457999999999999999999876542 45566
No 22
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.75 E-value=9.9e-08 Score=78.10 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHH-HHHHHHHcCCCHH
Q 025490 118 LDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMRTEQLSSE 165 (252)
Q Consensus 118 ~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv-~ayLm~~~~~s~~ 165 (252)
..+...+++|+++.-+.-++||||.+|+|||++++ ++.|.....+...
T Consensus 77 e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ 125 (172)
T COG5350 77 EAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDET 125 (172)
T ss_pred HHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChH
Confidence 56788999999998888899999999999998866 4455666677777
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.68 E-value=1.3e-07 Score=83.74 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=33.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhh--CCcEEEecCCCCChhHHHHHHHHHHH
Q 025490 110 RDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT 159 (252)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~--~G~VLVHC~aG~sRS~~lv~ayLm~~ 159 (252)
.|...+.-...+-+.+..++.... .|+|+|||.+|+|||+++++++++..
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~ 218 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQ 218 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHH
Confidence 344443222334444555555444 45799999999999999999987643
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=6.3e-07 Score=70.60 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=78.8
Q ss_pred eeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 025490 4 LVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSC 83 (252)
Q Consensus 4 ~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (252)
+|.+.|+|+++....|...++..|++.|||-....+- +
T Consensus 5 ~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe------------------------------------------~ 42 (130)
T COG3453 5 RINDRLSVSGQISPADIASIAALGFKSIICNRPDGEE------------------------------------------P 42 (130)
T ss_pred ecccceeecCCCCHHHHHHHHHhccceecccCCCCCC------------------------------------------C
Confidence 6899999999999999999999999999999763210 0
Q ss_pred CCCchhhhhhhhhccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhh--CCcEEEecCCCCChhHHHHHHHHHHHcC
Q 025490 84 LSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (252)
Q Consensus 84 ~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~G~VLVHC~aG~sRS~~lv~ayLm~~~~ 161 (252)
.-|. +.+++......++.|.++|+.-..... ..++-..+++. +|+||.||..|- ||.++=..-. ...|
T Consensus 43 ~QP~--~~~i~~aa~~aGl~y~~iPV~~~~iT~------~dV~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~g 112 (130)
T COG3453 43 GQPG--FAAIAAAAEAAGLTYTHIPVTGGGITE------ADVEAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGG 112 (130)
T ss_pred CCCC--hHHHHHHHHhcCCceEEeecCCCCCCH------HHHHHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcC
Confidence 0111 112344445678999999997644321 12333334443 578999999997 7754332222 4569
Q ss_pred CCHHHHHHHHHh
Q 025490 162 LSSEGLNKFIFS 173 (252)
Q Consensus 162 ~s~~eA~~~v~~ 173 (252)
|+.+++..+=+.
T Consensus 113 m~~de~~a~g~a 124 (130)
T COG3453 113 MSRDEIEALGQA 124 (130)
T ss_pred CCHHHHHHHHHh
Confidence 998876665443
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.59 E-value=2.9e-07 Score=76.43 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=20.7
Q ss_pred eecC-eeecChhc---hhhHHHhhhCCCcEEEEcccc
Q 025490 5 VREH-LFIGNISD---AADILQNGSSEITHMLSVLSS 37 (252)
Q Consensus 5 I~~~-LylGs~~~---a~d~~~L~~~gIt~IVnl~~~ 37 (252)
|-++ ||-++... ..|.+.|.++||++||++.++
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~ 52 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSP 52 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-H
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCc
Confidence 5556 77776554 567889999999999999984
No 26
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.43 E-value=4.6e-07 Score=74.50 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=45.1
Q ss_pred ccCcceEEEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC-cEEEecCCCCChhHHHHHHHHHH
Q 025490 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMR 158 (252)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G-~VLVHC~aG~sRS~~lv~ayLm~ 158 (252)
....++.|++||+.|...++ ...|++.++++... -++ -+.+||.+|.|||.+..++|.|.
T Consensus 88 ~~~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 88 VEGNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999997655 55699999999988 555 49999999999999988888764
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.39 E-value=2.4e-06 Score=82.15 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=41.3
Q ss_pred ceEEEEE-ecCCCCCCcHHHHHHHHHHHHHHHhhC----------CcEEEecCCCCChhHHHHHHHHHHHcC-CCHH
Q 025490 101 KLVRMTV-PIRDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTEQ-LSSE 165 (252)
Q Consensus 101 ~i~~l~i-pi~D~~~~~l~~~~~~~~~fI~~~~~~----------G~VLVHC~aG~sRS~~lv~ayLm~~~~-~s~~ 165 (252)
.+.++|+ .++|...++-...+...++.++..... +.++|||.+|+|||++++++++|...+ .+++
T Consensus 422 tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle 498 (535)
T PRK15375 422 TIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLE 498 (535)
T ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHH
Confidence 3555555 345654443333355555555554221 236899999999999999999987543 4677
No 28
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.23 E-value=8.3e-06 Score=70.06 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=27.1
Q ss_pred HHHHHHHHHh--hCCcEEEecCCCCChhHHHHHHHHHHH
Q 025490 123 VCFDFIDRRR--KEGGVLVHCFAGVSRSAAIITAYLMRT 159 (252)
Q Consensus 123 ~~~~fI~~~~--~~G~VLVHC~aG~sRS~~lv~ayLm~~ 159 (252)
..++.+.... ..++|+|||.+|.|||++++++.++..
T Consensus 157 ~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~ 195 (235)
T PF00102_consen 157 DFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIE 195 (235)
T ss_dssp HHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCccceEeecccccccccccccchhhcc
Confidence 3444444444 235699999999999999998887754
No 29
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.18 E-value=1.5e-05 Score=72.86 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMR 158 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~ 158 (252)
|+|+|||.+|+|||+++++...+.
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i 253 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICI 253 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHH
Confidence 579999999999999988776543
No 30
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.12 E-value=5.1e-06 Score=79.22 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=68.5
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHhhCC--c-EEEecCCCCChhHHHHHHHHHHHcCCC-HHHHHHHHHhhccc---
Q 025490 105 MTVPIRDMESENLLDYLDVCFDFIDRRRKEG--G-VLVHCFAGVSRSAAIITAYLMRTEQLS-SEGLNKFIFSLEYY--- 177 (252)
Q Consensus 105 l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G--~-VLVHC~aG~sRS~~lv~ayLm~~~~~s-~~eA~~~v~~~r~~--- 177 (252)
..++++|...+.+.. +..+++-++..+... + |.|||.+|.+||+++++||||+....+ .++|+++...+|.+
T Consensus 76 ~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~ 154 (434)
T KOG2283|consen 76 ARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGK 154 (434)
T ss_pred eecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccc
Confidence 457889988877655 667888888888754 4 999999999999999999999987665 99999999999922
Q ss_pred --ccchhhhhhhhchhhh
Q 025490 178 --ESTQSYCLFLSDEYEI 193 (252)
Q Consensus 178 --~~~~~~~~~~~~~~~~ 193 (252)
....+..++++.-|+.
T Consensus 155 ~~~~~~PSq~RYv~Y~~~ 172 (434)
T KOG2283|consen 155 SKGVTIPSQRRYVGYFSR 172 (434)
T ss_pred cCCccCchhhHHHHHHHH
Confidence 2334445555655554
No 31
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.10 E-value=2.6e-05 Score=68.33 Aligned_cols=114 Identities=10% Similarity=0.171 Sum_probs=78.9
Q ss_pred ceeecCeeecChhchhhHHHhhhCCCcEEEEccccccccchhcccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 025490 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (252)
Q Consensus 3 ~~I~~~LylGs~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (252)
+-|.++||-++++...+...|+.++.+.||.++.+. |
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~---y---------------------------------------- 97 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP---Y---------------------------------------- 97 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCC---C----------------------------------------
Confidence 347789999999999999999999999999999852 1
Q ss_pred CCCCchhhhhhhhhccCcceEEEEEecCCCC-------CCcHHHHHHHHHHHHHHHhhCC--cEEEecCCCCChhHHHHH
Q 025490 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDME-------SENLLDYLDVCFDFIDRRRKEG--GVLVHCFAGVSRSAAIIT 153 (252)
Q Consensus 83 ~~~p~~~~~~~~~~~~~~~i~~l~ipi~D~~-------~~~l~~~~~~~~~fI~~~~~~G--~VLVHC~aG~sRS~~lv~ 153 (252)
+...+ .+ .+..+|.+.+|-+...- .....+.+..++++ .+..+ ++||||..|..|+++++.
T Consensus 98 --p~~nl----~f-~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 98 --PEENL----NF-LESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred --ChHHH----HH-HHhcCceEEEEecccccccccCCCCCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHH
Confidence 01111 11 13347888888876443 22222334344443 45444 599999999999999998
Q ss_pred HHHHHHcCCCHHHHHHH
Q 025490 154 AYLMRTEQLSSEGLNKF 170 (252)
Q Consensus 154 ayLm~~~~~s~~eA~~~ 170 (252)
+.- +.++|++...++.
T Consensus 168 clR-klq~W~lssil~E 183 (249)
T KOG1572|consen 168 CLR-KLQNWSLSSILDE 183 (249)
T ss_pred HHH-HHhccchhHHHHH
Confidence 866 6678998754443
No 32
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.09 E-value=3.1e-05 Score=71.38 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred CcEEEecCCCCChhHHHHHHHHH
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLM 157 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm 157 (252)
|+|+|||.+|+||||++++...+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~ 270 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNA 270 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHH
Confidence 57999999999999998876654
No 33
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.08 E-value=3.2e-05 Score=70.53 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.3
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMR 158 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~ 158 (252)
|+|+|||.+|+|||+++++...+.
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l 245 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICA 245 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 579999999999999988776443
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.05 E-value=3e-05 Score=71.12 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.7
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMR 158 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~ 158 (252)
|+|+|||.+|+|||+++++...+.
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i 253 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICL 253 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHH
Confidence 579999999999999998776543
No 35
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.01 E-value=5.4e-05 Score=72.67 Aligned_cols=106 Identities=19% Similarity=0.132 Sum_probs=77.6
Q ss_pred ceEEEEEecCCC--CCCcHHHHHHHHHHHHHHHhhC--Cc-EEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHH-hh
Q 025490 101 KLVRMTVPIRDM--ESENLLDYLDVCFDFIDRRRKE--GG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIF-SL 174 (252)
Q Consensus 101 ~i~~l~ipi~D~--~~~~l~~~~~~~~~fI~~~~~~--G~-VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~-~~ 174 (252)
...++++|+... ...++...+++++.|+...+.+ ++ |+|+|..|...|+++++|.|...+..... +.. ..
T Consensus 338 ~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~----~~~~~~ 413 (451)
T PF04179_consen 338 SPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGN----FRDSFE 413 (451)
T ss_pred CceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccC----cccccc
Confidence 345788888655 3446888899999999999987 64 99999999999999999999988765444 000 00
Q ss_pred cccccchhhhhhhhchhhhhcccchhhhhhhhhcccCCCCCCCCChhHHHHHHHHhcCCccCChhHHHHHHHH
Q 025490 175 EYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQVILI 247 (252)
Q Consensus 175 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~r~~~~pn~~f~~ql~~~ 247 (252)
+.. ++-- . +-..+.++...+|.+.|.++.++++-.|
T Consensus 414 ~~~----------itK~-~--------------------------IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 414 RPS----------ITKD-D--------------------------IRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cCC----------CCHH-H--------------------------HHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 000 0000 1 1178888999999999999999998665
No 36
>PHA02738 hypothetical protein; Provisional
Probab=97.93 E-value=9.5e-05 Score=68.10 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=30.8
Q ss_pred CcEEEecCCCCChhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcccc
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGLNKFIFSLEYYE 178 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~-----~~~~s~~eA~~~v~~~r~~~ 178 (252)
|+|+|||.+|+|||+++++.-.+. ....++.+++..|++.|+..
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~ 276 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYS 276 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhc
Confidence 469999999999999987665432 22446666666666666543
No 37
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00015 Score=74.61 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhC-C-cEEEecCCCCChhHHHHHHHHHH
Q 025490 110 RDMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAYLMR 158 (252)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~-G-~VLVHC~aG~sRS~~lv~ayLm~ 158 (252)
.|...++=.+.|-+.++.|+.++.. + +|+|||.||+|||++++++=+|.
T Consensus 1037 PDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l 1087 (1144)
T KOG0792|consen 1037 PDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETAL 1087 (1144)
T ss_pred ccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHH
Confidence 3444433334444444445555544 5 59999999999999988655443
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.59 E-value=0.00012 Score=65.29 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=35.7
Q ss_pred ceEEEEE-ecCCCCCCcHHHHHHHHHHHHHHHh----hCCcEEEecCCCCChhHHHHHHHHHHH
Q 025490 101 KLVRMTV-PIRDMESENLLDYLDVCFDFIDRRR----KEGGVLVHCFAGVSRSAAIITAYLMRT 159 (252)
Q Consensus 101 ~i~~l~i-pi~D~~~~~l~~~~~~~~~fI~~~~----~~G~VLVHC~aG~sRS~~lv~ayLm~~ 159 (252)
.|.++.. .+.|...+++. +..++++... ..|+++|||.||+||+|++++.-.+..
T Consensus 184 ~Ihhf~y~nW~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~ 243 (302)
T COG5599 184 KIHHFQYINWVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR 243 (302)
T ss_pred EEEEEEecCccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHh
Confidence 4444443 34566555543 4556666555 446799999999999999876664443
No 39
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.52 E-value=0.00014 Score=68.25 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=62.1
Q ss_pred cCcceEEEEEecCCCC---CCcHHHHHHH-HHHHHHHHhhCCc-EEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHH
Q 025490 98 KDLKLVRMTVPIRDME---SENLLDYLDV-CFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIF 172 (252)
Q Consensus 98 ~~~~i~~l~ipi~D~~---~~~l~~~~~~-~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~ 172 (252)
...++.|+.+...... .......|.. +-.|++.....|+ |+|||.+|.+|++-++++|||...+|+..+|++.+.
T Consensus 83 ~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~ 162 (393)
T KOG2386|consen 83 EERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFA 162 (393)
T ss_pred cccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHH
Confidence 3457777777654432 2222233333 3345555555677 999999999999999999999999999999999999
Q ss_pred hhc-ccccchhhh
Q 025490 173 SLE-YYESTQSYC 184 (252)
Q Consensus 173 ~~r-~~~~~~~~~ 184 (252)
.-| +....++|.
T Consensus 163 ~~r~~gi~k~dyi 175 (393)
T KOG2386|consen 163 DARPPGIEKQDYI 175 (393)
T ss_pred HhCCCccCchHHH
Confidence 877 555555544
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.41 E-value=0.00015 Score=68.55 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=31.5
Q ss_pred EEEEecCCCCCCc----HHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHH-HHHHH
Q 025490 104 RMTVPIRDMESEN----LLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLM 157 (252)
Q Consensus 104 ~l~ipi~D~~~~~----l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv-~ayLm 157 (252)
|+.+-+.|...+. ++.+++++..-=....+.|+|.|||.||+||+++++ +--||
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~ll 475 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLL 475 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHH
Confidence 3444455654332 334344433332223456899999999999999955 33343
No 41
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.30 E-value=0.0015 Score=58.18 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhC--CcEEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhhcccccchhhhhhhhchhh
Q 025490 122 DVCFDFIDRRRKE--GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYYESTQSYCLFLSDEYE 192 (252)
Q Consensus 122 ~~~~~fI~~~~~~--G~VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r~~~~~~~~~~~~~~~~~ 192 (252)
+....++.-.... ++||+||.+|..|++.+++.|+....++.-..+-+++..-++-.........++.+.+
T Consensus 122 e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~ 194 (249)
T COG2365 122 ERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKL 194 (249)
T ss_pred HHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhcc
Confidence 3344444444443 6799999999999999999999999777777888888887776655554445555555
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.85 E-value=0.0053 Score=57.62 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=28.7
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHH-H--c---CCCHHHHHHHHHhhccc
Q 025490 134 EGGVLVHCFAGVSRSAAIITAYLMR-T--E---QLSSEGLNKFIFSLEYY 177 (252)
Q Consensus 134 ~G~VLVHC~aG~sRS~~lv~ayLm~-~--~---~~s~~eA~~~v~~~r~~ 177 (252)
.|++.|||.+|+||++++++.-.+. . . .....+.+..++..|+.
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~ 348 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPG 348 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Confidence 4679999999999999988655222 2 1 12355555555555543
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=96.46 E-value=0.013 Score=54.42 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=32.5
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHHHhhC--CcEEEecCCCCChhHHHHHHHHH
Q 025490 106 TVPIRDMESENLLDYLDVCFDFIDRRRKE--GGVLVHCFAGVSRSAAIITAYLM 157 (252)
Q Consensus 106 ~ipi~D~~~~~l~~~~~~~~~fI~~~~~~--G~VLVHC~aG~sRS~~lv~ayLm 157 (252)
...+.|.+.+.-...+-+.+......... +.++|||.+|+||++|..+.--+
T Consensus 257 y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 257 YTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred EeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 34556666553333343344444444443 46999999999999998766533
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.08 E-value=0.087 Score=52.88 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=32.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHHhhCC--cEEEecCCCCChhHHHHHH
Q 025490 104 RMTVPIRDMESENLLDYLDVCFDFIDRRRKEG--GVLVHCFAGVSRSAAIITA 154 (252)
Q Consensus 104 ~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~G--~VLVHC~aG~sRS~~lv~a 154 (252)
++.+.+.|...+.-...+-+.-..++++.... .|+|||..|-||+++-++.
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yili 947 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILI 947 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeH
Confidence 44455666666555554444444455555432 4999999999999985543
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.07 E-value=0.066 Score=43.75 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=41.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhC----CcEEEecCCCCCh----hHHHHHHHHHHHcCCCHHHHHHHHHhhc
Q 025490 110 RDMESENLLDYLDVCFDFIDRRRKE----GGVLVHCFAGVSR----SAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (252)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~----G~VLVHC~aG~sR----S~~lv~ayLm~~~~~s~~eA~~~v~~~r 175 (252)
.|.+.-++.. +-+.+..+++.+++ ++.+|||.+.-.+ ++.++.+|+|...|||+++|++-+.+..
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 6777777665 44556666666654 6799998877654 4778899999999999999999998875
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.40 E-value=0.021 Score=59.54 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=28.7
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHHh-----hCCcEEEecCCCCChhHHHH
Q 025490 108 PIRDMESENLLDYLDVCFDFIDRRR-----KEGGVLVHCFAGVSRSAAII 152 (252)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~-----~~G~VLVHC~aG~sRS~~lv 152 (252)
-+.|...+. +-...++|+++.. ..|+++|||.||+|||++.+
T Consensus 702 ~Wpd~gvPe---~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi 748 (1087)
T KOG4228|consen 702 AWPDHGVPE---TPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFI 748 (1087)
T ss_pred cCCCCCCcc---cchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEE
Confidence 344544433 2334566776665 35889999999999999955
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.72 E-value=0.1 Score=54.74 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHH
Q 025490 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMR 158 (252)
Q Consensus 121 ~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~ 158 (252)
+.++.+.-++....|++.|||.+|.+||++.+++-++.
T Consensus 1005 i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~ 1042 (1087)
T KOG4228|consen 1005 IPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILL 1042 (1087)
T ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHH
Confidence 33333333333346679999999999999988666543
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=0.26 Score=48.74 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=22.2
Q ss_pred HHHHHhhC-Cc-EEEecCCCCChhHHHHH-HHHHH
Q 025490 127 FIDRRRKE-GG-VLVHCFAGVSRSAAIIT-AYLMR 158 (252)
Q Consensus 127 fI~~~~~~-G~-VLVHC~aG~sRS~~lv~-ayLm~ 158 (252)
.|...++. +. |||||..|..|++-+++ |-||.
T Consensus 365 ~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 365 RIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 34444444 44 99999999999998774 43443
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=86.57 E-value=1.6 Score=40.78 Aligned_cols=21 Identities=43% Similarity=0.800 Sum_probs=16.1
Q ss_pred hCCc-EEEecCCCCChhHHHHH
Q 025490 133 KEGG-VLVHCFAGVSRSAAIIT 153 (252)
Q Consensus 133 ~~G~-VLVHC~aG~sRS~~lv~ 153 (252)
.+|. |||||..|..|++.++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 4564 99999999999977654
No 50
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=83.62 E-value=2.2 Score=42.23 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=23.6
Q ss_pred HHHHHHHhh-CC-cEEEecCCCCChhHHHHH-HHHHH
Q 025490 125 FDFIDRRRK-EG-GVLVHCFAGVSRSAAIIT-AYLMR 158 (252)
Q Consensus 125 ~~fI~~~~~-~G-~VLVHC~aG~sRS~~lv~-ayLm~ 158 (252)
..+|.+++. +| .|||||..|..|++.++. |=||.
T Consensus 333 a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 333 AAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 345555566 44 499999999999987763 33443
No 51
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=79.74 E-value=12 Score=27.57 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=16.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..|. ||...+ .+| ...|.+
T Consensus 63 ~ivvyC~~G~-rs~~a~-~~L-~~~G~~ 87 (101)
T cd01518 63 KVLMYCTGGI-RCEKAS-AYL-KERGFK 87 (101)
T ss_pred EEEEECCCch-hHHHHH-HHH-HHhCCc
Confidence 5999999884 886543 334 445654
No 52
>PRK01415 hypothetical protein; Validated
Probab=75.86 E-value=7.3 Score=34.74 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=17.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.+|+++|.+|+ ||. .++++|. ..|..
T Consensus 172 k~Iv~yCtgGi-Rs~-kAa~~L~-~~Gf~ 197 (247)
T PRK01415 172 KKIAMVCTGGI-RCE-KSTSLLK-SIGYD 197 (247)
T ss_pred CeEEEECCCCh-HHH-HHHHHHH-HcCCC
Confidence 35999999996 874 4445554 44654
No 53
>PLN02160 thiosulfate sulfurtransferase
Probab=69.36 E-value=9.8 Score=30.38 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=18.2
Q ss_pred hCC-cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 133 ~~G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
..+ +|+|||..|. ||...+. .+...|.+
T Consensus 79 ~~~~~IivyC~sG~-RS~~Aa~--~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSGA-RSLKATT--ELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCcH-HHHHHHH--HHHHcCCC
Confidence 444 5999999995 8865532 33445654
No 54
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=65.61 E-value=17 Score=27.32 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=16.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..|. ||.. + +..+...|.+
T Consensus 68 ~ivv~C~~G~-rs~~-a-~~~L~~~G~~ 92 (109)
T cd01533 68 PIVVNCAGRT-RSII-G-AQSLINAGLP 92 (109)
T ss_pred eEEEECCCCc-hHHH-H-HHHHHHCCCC
Confidence 5999999997 7743 3 3344555663
No 55
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=63.98 E-value=7 Score=28.90 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=17.2
Q ss_pred hhCC-cEEEecCCCCChhHHHHHHHHHHH
Q 025490 132 RKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (252)
Q Consensus 132 ~~~G-~VLVHC~aG~sRS~~lv~ayLm~~ 159 (252)
..++ .|+|+|..|. ||.. ++.+|...
T Consensus 58 ~~~~~~ivv~C~~G~-rS~~-aa~~L~~~ 84 (110)
T COG0607 58 LPDDDPIVVYCASGV-RSAA-AAAALKLA 84 (110)
T ss_pred cCCCCeEEEEeCCCC-ChHH-HHHHHHHc
Confidence 4445 5999999999 8844 44444433
No 56
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=63.30 E-value=20 Score=33.02 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=17.7
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.+|+|+|.+|+ ||.. +++||.. .|.+
T Consensus 172 k~IvvyC~~G~-Rs~~-aa~~L~~-~Gf~ 197 (314)
T PRK00142 172 KKVVMYCTGGI-RCEK-ASAWMKH-EGFK 197 (314)
T ss_pred CeEEEECCCCc-HHHH-HHHHHHH-cCCC
Confidence 35999999997 8844 4555554 4654
No 57
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=62.41 E-value=16 Score=33.31 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=14.9
Q ss_pred EEEecCCCCChhHHHH
Q 025490 137 VLVHCFAGVSRSAAII 152 (252)
Q Consensus 137 VLVHC~aG~sRS~~lv 152 (252)
|-|=|.+|..||++++
T Consensus 245 IaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 245 IAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEcCCCcCcHHHHH
Confidence 8888999999999987
No 58
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=61.08 E-value=12 Score=29.55 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhhc-cccc
Q 025490 142 FAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE-YYES 179 (252)
Q Consensus 142 ~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r-~~~~ 179 (252)
..|++|+.|.+++||+.....+.. -++.+..+| |.|+
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~sS~-~IE~~sgLRQPEVS 59 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEASSR-EIERVSGLRQPEVS 59 (124)
T ss_pred HcCCCchHHHHHHHHhcCcchhhh-hhHHhhcCCCchhH
Confidence 359999999999999987555444 355555555 5543
No 59
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=59.49 E-value=18 Score=32.93 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHH----hhCCc----EEEecCCCCChhHHHH
Q 025490 120 YLDVCFDFIDRR----RKEGG----VLVHCFAGVSRSAAII 152 (252)
Q Consensus 120 ~~~~~~~fI~~~----~~~G~----VLVHC~aG~sRS~~lv 152 (252)
.++.+.++++.. .++|+ |-|=|.+|..||++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 344444444443 35674 8888999999999987
No 60
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=59.35 E-value=26 Score=28.82 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=18.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.|+|+|..|..||.. +++++...|.+
T Consensus 118 ~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 118 PLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred EEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 599999998878865 45555555654
No 61
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=58.32 E-value=69 Score=23.26 Aligned_cols=58 Identities=17% Similarity=0.367 Sum_probs=29.6
Q ss_pred EEEecCCC---CCCcHHHHHHHHHHHHHHHhhCCc-EEEecCCCCChhHHHHHH---HHHHHcCCC
Q 025490 105 MTVPIRDM---ESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITA---YLMRTEQLS 163 (252)
Q Consensus 105 l~ipi~D~---~~~~l~~~~~~~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~a---yLm~~~~~s 163 (252)
.++|..+. ........+............+++ |+|+|..|. |+...+.+ +.+...|.+
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 56666432 222333334444444443445554 999997766 55444433 445555653
No 62
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=55.88 E-value=31 Score=26.80 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=19.5
Q ss_pred hCC-cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 133 ~~G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.++ +|+|+|..|-.||..++ +++...|..
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 344 59999986555876544 666766764
No 63
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=55.33 E-value=20 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=16.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..|. ||..++ .. +...|.+
T Consensus 63 ~ivv~C~~G~-rs~~aa-~~-L~~~G~~ 87 (100)
T cd01523 63 EVTVICAKEG-SSQFVA-EL-LAERGYD 87 (100)
T ss_pred eEEEEcCCCC-cHHHHH-HH-HHHcCce
Confidence 5999999996 774433 33 3444654
No 64
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=52.76 E-value=37 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=16.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..| .||... +.+|. ..|.+
T Consensus 60 ~vv~~c~~g-~rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 60 DIVVLCHHG-GRSMQV-AQWLL-RQGFE 84 (101)
T ss_pred eEEEEeCCC-chHHHH-HHHHH-HcCCc
Confidence 599999998 487544 33333 45654
No 65
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=52.68 E-value=25 Score=31.93 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.1
Q ss_pred hCCc----EEEecCCCCChhHHHH
Q 025490 133 KEGG----VLVHCFAGVSRSAAII 152 (252)
Q Consensus 133 ~~G~----VLVHC~aG~sRS~~lv 152 (252)
++|+ |-|=|.+|..||++++
T Consensus 238 ~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 238 KEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred hcCCeEEEEEEccCCCccchHHHH
Confidence 4663 8889999999999987
No 66
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=51.05 E-value=34 Score=25.98 Aligned_cols=28 Identities=21% Similarity=-0.089 Sum_probs=17.6
Q ss_pred CC-cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 134 EG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 134 ~G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.+ .|+|+|..| +++++.++. ++...|++
T Consensus 78 ~~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 44 499999998 555555443 34455654
No 67
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=49.66 E-value=1e+02 Score=28.47 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhh--CC-cEEEecCCCCChhHHHHHHHHH
Q 025490 121 LDVCFDFIDRRRK--EG-GVLVHCFAGVSRSAAIITAYLM 157 (252)
Q Consensus 121 ~~~~~~fI~~~~~--~G-~VLVHC~aG~sRS~~lv~ayLm 157 (252)
|.+.-.+|.+..+ ++ +|...|.+|+ |- =-+.+||.
T Consensus 156 FrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~ 193 (308)
T COG1054 156 FREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMK 193 (308)
T ss_pred hhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHH
Confidence 5555566665543 34 6999999999 54 23345544
No 68
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=48.04 E-value=1.1e+02 Score=23.02 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=13.1
Q ss_pred cEEEecCCCCChhHHHH
Q 025490 136 GVLVHCFAGVSRSAAII 152 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv 152 (252)
.|+|||..|-.||+.++
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 59999998767876544
No 69
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=47.85 E-value=1.4e+02 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=25.0
Q ss_pred CCceeecCeeecC--hhchhhHHH----hhhCCCcEEEEccc
Q 025490 1 MPYLVREHLFIGN--ISDAADILQ----NGSSEITHMLSVLS 36 (252)
Q Consensus 1 ~P~~I~~~LylGs--~~~a~d~~~----L~~~gIt~IVnl~~ 36 (252)
||.-|+.++.++. .....+... -..-|||+|++...
T Consensus 13 lPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~ 54 (374)
T cd01317 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPN 54 (374)
T ss_pred ecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCC
Confidence 5888999998876 333344433 34568999999975
No 70
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=46.94 E-value=93 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.2
Q ss_pred CcEEEecCCCCChhHHHHHH
Q 025490 135 GGVLVHCFAGVSRSAAIITA 154 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~a 154 (252)
.+|+|||..|-.||...+-.
T Consensus 63 ~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 63 DTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CeEEEEeecCCcchHHHHHH
Confidence 36999999555688766543
No 71
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=46.77 E-value=32 Score=24.99 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=16.6
Q ss_pred CcEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.+|+|+|..|...++..+ +..+...|.+
T Consensus 51 ~~ivl~c~~G~~~~s~~a-a~~L~~~G~~ 78 (92)
T cd01532 51 TPIVVYGEGGGEDLAPRA-ARRLSELGYT 78 (92)
T ss_pred CeEEEEeCCCCchHHHHH-HHHHHHcCcc
Confidence 369999999864433444 3444444543
No 72
>smart00400 ZnF_CHCC zinc finger.
Probab=46.34 E-value=23 Score=23.59 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=22.9
Q ss_pred EEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHH
Q 025490 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFI 171 (252)
Q Consensus 138 LVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v 171 (252)
..||.+ -++++- ++.++|...|.++.||++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 467774 345554 46777888899999998875
No 73
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=43.60 E-value=44 Score=25.55 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=15.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~ 162 (252)
+|+|+|..|. ||..++. .+...|.
T Consensus 66 ~ivv~C~~G~-rs~~aa~--~L~~~G~ 89 (117)
T cd01522 66 PVLLLCRSGN-RSIAAAE--AAAQAGF 89 (117)
T ss_pred eEEEEcCCCc-cHHHHHH--HHHHCCC
Confidence 5999999985 8865432 2344454
No 74
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=41.02 E-value=46 Score=29.59 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=23.4
Q ss_pred CeeecChhchhhH-HHhhhCCCcEEEEccc
Q 025490 8 HLFIGNISDAADI-LQNGSSEITHMLSVLS 36 (252)
Q Consensus 8 ~LylGs~~~a~d~-~~L~~~gIt~IVnl~~ 36 (252)
.+.+|...+..+. .++++.||+.|||.+.
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATH 75 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATH 75 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCC
Confidence 3788998555555 6679999999999987
No 75
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=40.02 E-value=58 Score=30.77 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=18.6
Q ss_pred hCCc-EEEecCCCC-----ChhHHHHHHHHHHHcCCCH
Q 025490 133 KEGG-VLVHCFAGV-----SRSAAIITAYLMRTEQLSS 164 (252)
Q Consensus 133 ~~G~-VLVHC~aG~-----sRS~~lv~ayLm~~~~~s~ 164 (252)
.+|. ||.||.+|. +-..++...+..+..|..+
T Consensus 165 ~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f 202 (363)
T PRK05772 165 NDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSV 202 (363)
T ss_pred CCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeE
Confidence 3564 999999873 2233444455555545443
No 76
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=39.88 E-value=94 Score=24.79 Aligned_cols=61 Identities=15% Similarity=0.319 Sum_probs=39.4
Q ss_pred ceEEEEEecCCCCCC-cHHHHHHHHHHHHHHHhhCCc--EEEecCCCCChhHHHHHHHHHHHcC
Q 025490 101 KLVRMTVPIRDMESE-NLLDYLDVCFDFIDRRRKEGG--VLVHCFAGVSRSAAIITAYLMRTEQ 161 (252)
Q Consensus 101 ~i~~l~ipi~D~~~~-~l~~~~~~~~~fI~~~~~~G~--VLVHC~aG~sRS~~lv~ayLm~~~~ 161 (252)
.+.-..+|++|..++ +....++.+.+.|.+..++++ .+--|.+|--++-++.++|.+.-+|
T Consensus 53 ~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 53 EVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 343444567776543 334555666667777777776 4555777776777788888777666
No 77
>PRK05320 rhodanese superfamily protein; Provisional
Probab=39.67 E-value=46 Score=29.67 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=17.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+++|..|+ ||.. ++.+|.. .|.+
T Consensus 177 ~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf~ 201 (257)
T PRK05320 177 TVVSFCTGGI-RCEK-AAIHMQE-VGID 201 (257)
T ss_pred eEEEECCCCH-HHHH-HHHHHHH-cCCc
Confidence 5999999996 8855 4455543 4553
No 78
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=38.71 E-value=61 Score=23.14 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=16.0
Q ss_pred CC-cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 134 EG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 134 ~G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
++ +|+|+|..|. ||..+ +..+...|.+
T Consensus 55 ~~~~ivv~c~~g~-~s~~a--~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCYHGN-SSAQL--AQALREAGFT 82 (96)
T ss_pred CCCCEEEEeCCCC-hHHHH--HHHHHHcCCc
Confidence 44 5999999664 55432 3344454543
No 79
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=38.64 E-value=16 Score=27.78 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=8.0
Q ss_pred cEEEecCCC
Q 025490 136 GVLVHCFAG 144 (252)
Q Consensus 136 ~VLVHC~aG 144 (252)
+|||||.-|
T Consensus 87 ~~yIhCsIG 95 (97)
T PF10302_consen 87 RIYIHCSIG 95 (97)
T ss_pred eEEEEEecc
Confidence 599999877
No 80
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=36.59 E-value=1.9e+02 Score=26.37 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=54.8
Q ss_pred cCcceEEEEEecCCCCCC-----cHHHHHHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHH
Q 025490 98 KDLKLVRMTVPIRDMESE-----NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIF 172 (252)
Q Consensus 98 ~~~~i~~l~ipi~D~~~~-----~l~~~~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~ 172 (252)
++-++...++|..|.... +....++..++..+.+.+.+.+=++|..|+.=. -+.+|+... +++++|++.|+
T Consensus 32 GGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPa---E~~~l~e~~-~~peea~e~m~ 107 (285)
T COG1831 32 GGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPA---EVSRLAEAG-RSPEEALEEMR 107 (285)
T ss_pred CCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHH---HHHHHHHhc-cChHHHHHHHH
Confidence 445777788888887655 566667777777777778888889999999643 456777774 99999999887
Q ss_pred h
Q 025490 173 S 173 (252)
Q Consensus 173 ~ 173 (252)
.
T Consensus 108 ~ 108 (285)
T COG1831 108 H 108 (285)
T ss_pred H
Confidence 4
No 81
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=36.51 E-value=62 Score=30.49 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=17.2
Q ss_pred CCcEEEecCCCC----ChhHHHHHHHHHHHcCC
Q 025490 134 EGGVLVHCFAGV----SRSAAIITAYLMRTEQL 162 (252)
Q Consensus 134 ~G~VLVHC~aG~----sRS~~lv~ayLm~~~~~ 162 (252)
+|.||.||.+|- +-..++.+.+..+..|.
T Consensus 160 dg~ILTHcnaG~LAt~~~gTal~vi~~A~~~gk 192 (356)
T PRK08334 160 EGNVLTHCNAGSLATVHLGTVGAVLRVMHKDGT 192 (356)
T ss_pred CCCEEEecCcchhhhcccchHHHHHHHHHHcCC
Confidence 456999999886 22334444444555443
No 82
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=36.13 E-value=22 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHhhcccccchhhhhhhhchhh
Q 025490 170 FIFSLEYYESTQSYCLFLSDEYE 192 (252)
Q Consensus 170 ~v~~~r~~~~~~~~~~~~~~~~~ 192 (252)
+|++.||.+.+.+.+..+|.+||
T Consensus 117 ~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 117 FVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HHHHHCCccCCCHHHHHHHHHhC
Confidence 35667788888888988888886
No 83
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=35.83 E-value=36 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=24.0
Q ss_pred EEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 025490 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSL 174 (252)
Q Consensus 138 LVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~ 174 (252)
.-||.+ -+.++-+ +.++|...++++.||++.+...
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHH
Confidence 678884 5666654 6777999999999999998764
No 84
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.64 E-value=29 Score=26.07 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=12.9
Q ss_pred CcEEEecCCCCChhHHHH
Q 025490 135 GGVLVHCFAGVSRSAAII 152 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv 152 (252)
.+||+-|.+|++ |..++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 469999999998 44433
No 85
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=34.44 E-value=42 Score=30.09 Aligned_cols=31 Identities=45% Similarity=0.567 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 025490 142 FAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSL 174 (252)
Q Consensus 142 ~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~ 174 (252)
.=|+|||++.+.+-++ .|++.++|.++=--.
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~fSFll 189 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARFSFLL 189 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4599999987777655 388888777654433
No 86
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.40 E-value=74 Score=29.75 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=12.9
Q ss_pred hCCc-EEEecCCCCChhH
Q 025490 133 KEGG-VLVHCFAGVSRSA 149 (252)
Q Consensus 133 ~~G~-VLVHC~aG~sRS~ 149 (252)
..|. ||.||.+|..+++
T Consensus 146 ~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 146 EDGDTVLTHCNAGRLACV 163 (339)
T ss_pred cCCCEEEEecCCcccccc
Confidence 3564 9999999987653
No 87
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=33.80 E-value=27 Score=29.32 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.4
Q ss_pred CceeecCeeecChhchhhHHH--hhhCCCcEEEE
Q 025490 2 PYLVREHLFIGNISDAADILQ--NGSSEITHMLS 33 (252)
Q Consensus 2 P~~I~~~LylGs~~~a~d~~~--L~~~gIt~IVn 33 (252)
|+...|++|+-+..+- +.+. |++.||+.||-
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~ 46 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIF 46 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEEE
Confidence 7889999999888775 6677 99999999874
No 88
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=33.37 E-value=66 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhh
Q 025490 149 AAIITAYLMRTEQLSSEGLNKFIFSL 174 (252)
Q Consensus 149 ~~lv~ayLm~~~~~s~~eA~~~v~~~ 174 (252)
..-+.+.||..+|++.++|++.++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 34567889999999999999999855
No 89
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=33.22 E-value=93 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=17.7
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHhh
Q 025490 150 AIITAYLMRTE-QLSSEGLNKFIFSL 174 (252)
Q Consensus 150 ~lv~ayLm~~~-~~s~~eA~~~v~~~ 174 (252)
--+++||+... |+|+.+.=+++..+
T Consensus 32 R~ia~yl~~~~~~~s~~~Ig~~fg~r 57 (90)
T cd06571 32 RQIAMYLARELTGLSLPEIGRAFGGR 57 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 35788888875 99999666655533
No 90
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=33.03 E-value=85 Score=29.22 Aligned_cols=9 Identities=56% Similarity=1.036 Sum_probs=8.1
Q ss_pred cEEEecCCC
Q 025490 136 GVLVHCFAG 144 (252)
Q Consensus 136 ~VLVHC~aG 144 (252)
.||.||.+|
T Consensus 149 ~ILThcnsg 157 (331)
T TIGR00512 149 RVLTHCNTG 157 (331)
T ss_pred eEEeecCCc
Confidence 399999998
No 91
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=32.94 E-value=92 Score=27.67 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.4
Q ss_pred eeecChhchhhH-HHhhhCCCcEEEEccc
Q 025490 9 LFIGNISDAADI-LQNGSSEITHMLSVLS 36 (252)
Q Consensus 9 LylGs~~~a~d~-~~L~~~gIt~IVnl~~ 36 (252)
+..|...+..+. .++++++|+.|||.+.
T Consensus 46 v~~G~l~~~~~l~~~l~~~~i~~VIDATH 74 (248)
T PRK08057 46 VRVGGFGGAEGLAAYLREEGIDLVIDATH 74 (248)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCC
Confidence 677888454444 5678999999999987
No 92
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=32.69 E-value=51 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.5
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+++|..|. ||... +.+| ...|.+
T Consensus 58 ~iv~~c~~G~-rs~~a-a~~L-~~~G~~ 82 (95)
T cd01534 58 RIVLADDDGV-RADMT-ASWL-AQMGWE 82 (95)
T ss_pred eEEEECCCCC-hHHHH-HHHH-HHcCCE
Confidence 5999999987 77543 3333 555654
No 93
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=32.29 E-value=45 Score=24.20 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=13.5
Q ss_pred CcEEEecCCCCChhHHHH
Q 025490 135 GGVLVHCFAGVSRSAAII 152 (252)
Q Consensus 135 G~VLVHC~aG~sRS~~lv 152 (252)
++|+|.|.+|+|=|..+.
T Consensus 1 ~kilvvCg~G~gtS~ml~ 18 (87)
T cd05567 1 KKIVFACDAGMGSSAMGA 18 (87)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 369999999998764433
No 94
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=32.01 E-value=45 Score=30.23 Aligned_cols=27 Identities=44% Similarity=0.530 Sum_probs=20.1
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHHH
Q 025490 143 AGVSRSAAIITAYLMRTEQLSSEGLNKFI 171 (252)
Q Consensus 143 aG~sRS~~lv~ayLm~~~~~s~~eA~~~v 171 (252)
=|+|||++-+.+-++. |++-++|.++=
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~fS 192 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARFS 192 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHHH
Confidence 5999999877665553 88888776653
No 95
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=30.77 E-value=49 Score=29.61 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=19.1
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 025490 143 AGVSRSAAIITAYLMRTEQLSSEGLNKF 170 (252)
Q Consensus 143 aG~sRS~~lv~ayLm~~~~~s~~eA~~~ 170 (252)
=|+|||++.+.+-++ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999887766555 37887877654
No 96
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=30.58 E-value=95 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhCCc-EEEecCCC
Q 025490 120 YLDVCFDFIDRRRKEGG-VLVHCFAG 144 (252)
Q Consensus 120 ~~~~~~~fI~~~~~~G~-VLVHC~aG 144 (252)
...-++..++++.++|. |+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35568999999999995 99999544
No 97
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.67 E-value=1.2e+02 Score=25.92 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhCCc-EEEecCCCCChhHHHHHHH
Q 025490 118 LDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAY 155 (252)
Q Consensus 118 ~~~~~~~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~ay 155 (252)
.+.+.++++.+.+++.+|+ |++. |.|+|++++.-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~ 59 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHF 59 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHH
Confidence 3557788888888888775 7765 888887766443
No 98
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=29.62 E-value=1.3e+02 Score=22.25 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 134 ~G~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+..|+|+|..|. ||..+ +..++..|.+
T Consensus 58 ~~~ivv~c~~g~-~s~~a--~~~L~~~G~~ 84 (108)
T PRK00162 58 DTPVMVMCYHGN-SSQGA--AQYLLQQGFD 84 (108)
T ss_pred CCCEEEEeCCCC-CHHHH--HHHHHHCCch
Confidence 335999999987 66432 2244555654
No 99
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.52 E-value=1.1e+02 Score=26.43 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCChhHHHHHHHHHHHc
Q 025490 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTE 160 (252)
Q Consensus 121 ~~~~~~fI~~~~~~G~VLVHC~aG~sRS~~lv~ayLm~~~ 160 (252)
|.++++.|-++ +|+|+| .|+|||+-++=++-|.-.
T Consensus 28 ~~~a~~~i~~~--~gkv~V---~G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 28 FVRAVELILEC--KGKVFV---TGVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHHhc--CCcEEE---EcCChhHHHHHHHHHHHH
Confidence 55555555433 788887 499999999877665543
No 100
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=29.40 E-value=64 Score=23.32 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=17.4
Q ss_pred hCC-cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 133 ~~G-~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
..+ +|+|+|..|. ||.. ++..+...|..
T Consensus 59 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 87 (103)
T cd01447 59 AEDKPFVFYCASGW-RSAL--AGKTLQDMGLK 87 (103)
T ss_pred CCCCeEEEEcCCCC-cHHH--HHHHHHHcChH
Confidence 344 5999998884 7643 33455555543
No 101
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=29.06 E-value=55 Score=29.51 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 025490 142 FAGVSRSAAIITAYLMRTEQLSSEGLNKF 170 (252)
Q Consensus 142 ~aG~sRS~~lv~ayLm~~~~~s~~eA~~~ 170 (252)
.=|+|||++-+.+-++ .|++-++|.++
T Consensus 163 iPGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 163 IPGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 3699999887766554 38888877665
No 102
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=29.03 E-value=44 Score=29.81 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=15.6
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+++|..|+ ||+. + ++.+...|..
T Consensus 233 ~ii~yC~~G~-~A~~-~-~~~l~~~G~~ 257 (281)
T PRK11493 233 PIIASCGSGV-TAAV-V-VLALATLDVP 257 (281)
T ss_pred CEEEECCcHH-HHHH-H-HHHHHHcCCC
Confidence 5999999988 5543 3 3333455654
No 103
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=28.76 E-value=73 Score=23.25 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=16.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.|+|+|..|. ||..++ +.+...|.+
T Consensus 67 ~vv~~c~~g~-~s~~~a--~~L~~~G~~ 91 (105)
T cd01525 67 IIVIVSHSHK-HAALFA--AFLVKCGVP 91 (105)
T ss_pred eEEEEeCCCc-cHHHHH--HHHHHcCCC
Confidence 5999999987 775443 344455553
No 104
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=28.68 E-value=1.5e+02 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=15.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..|. ||...+ . .+...|.+
T Consensus 60 ~vvlyC~~G~-rS~~aa-~-~L~~~G~~ 84 (101)
T TIGR02981 60 TVKLYCNAGR-QSGMAK-D-ILLDMGYT 84 (101)
T ss_pred eEEEEeCCCH-HHHHHH-H-HHHHcCCC
Confidence 4999999996 775543 2 33344553
No 105
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=28.61 E-value=1.3e+02 Score=27.70 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=17.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..|-.||..++ +++...|+.
T Consensus 76 ~vvvyC~~gG~RS~~aa--~~L~~~G~~ 101 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLA--WLLAQIGFR 101 (311)
T ss_pred cEEEEECCCChHHHHHH--HHHHHcCCC
Confidence 39999976556886653 444555663
No 106
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=28.49 E-value=96 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhCCc-EEEecCC
Q 025490 121 LDVCFDFIDRRRKEGG-VLVHCFA 143 (252)
Q Consensus 121 ~~~~~~fI~~~~~~G~-VLVHC~a 143 (252)
..-+++.++++.++|. |+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3457899999999995 9999954
No 107
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=28.38 E-value=64 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=16.2
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~ 162 (252)
.|+|+|..|. ||...+. .+...|.
T Consensus 74 ~ivv~C~~G~-rs~~aa~--~L~~~G~ 97 (122)
T cd01526 74 PIYVVCRRGN-DSQTAVR--KLKELGL 97 (122)
T ss_pred cEEEECCCCC-cHHHHHH--HHHHcCC
Confidence 5999999996 8764333 3445566
No 108
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=28.02 E-value=78 Score=22.88 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=16.0
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..| .||..+ +.+| ...|.+
T Consensus 58 ~ivv~c~~g-~~s~~~-~~~l-~~~G~~ 82 (96)
T cd01529 58 RYVLTCDGS-LLARFA-AQEL-LALGGK 82 (96)
T ss_pred CEEEEeCCh-HHHHHH-HHHH-HHcCCC
Confidence 599999877 477553 3444 455653
No 109
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=27.95 E-value=63 Score=24.96 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=13.6
Q ss_pred cEEEecC-CCCChhHHHHHHHHHH
Q 025490 136 GVLVHCF-AGVSRSAAIITAYLMR 158 (252)
Q Consensus 136 ~VLVHC~-aG~sRS~~lv~ayLm~ 158 (252)
.|+|||. +| .||+.++ .+|..
T Consensus 70 ~vv~yC~~sg-~rs~~aa-~~L~~ 91 (121)
T cd01530 70 VLIFHCEFSS-KRGPRMA-RHLRN 91 (121)
T ss_pred EEEEECCCcc-ccHHHHH-HHHHH
Confidence 4999997 55 5876544 34443
No 110
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=27.86 E-value=1.2e+02 Score=28.28 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=17.5
Q ss_pred hCCc-EEEecCCCCChh----HHHHHHHHHHHcCC
Q 025490 133 KEGG-VLVHCFAGVSRS----AAIITAYLMRTEQL 162 (252)
Q Consensus 133 ~~G~-VLVHC~aG~sRS----~~lv~ayLm~~~~~ 162 (252)
..|. ||.||.+|.-.+ .++.+.+.....|.
T Consensus 145 ~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk 179 (344)
T PRK05720 145 RKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGI 179 (344)
T ss_pred cCCCEEEEecCCCcceecchhHHHHHHHHHHHcCC
Confidence 4564 999999996443 34434444444344
No 111
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=27.67 E-value=2.7e+02 Score=24.31 Aligned_cols=46 Identities=33% Similarity=0.437 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHHHHHHHh----hCCc-EEEecCCCCChhHHHHHHHHHHHcCCCHH
Q 025490 114 SENLLDYLDVCFDFIDRRR----KEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (252)
Q Consensus 114 ~~~l~~~~~~~~~fI~~~~----~~G~-VLVHC~aG~sRS~~lv~ayLm~~~~~s~~ 165 (252)
.+.+...+..+..|.++.+ .+|+ |+|+|++.. .=+++++-.|.+.+
T Consensus 131 ~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~ 181 (214)
T KOG0235|consen 131 GESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDE 181 (214)
T ss_pred CccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHh
Confidence 4456677777787777665 3576 999998733 33455666688877
No 112
>PHA02540 61 DNA primase; Provisional
Probab=26.88 E-value=1.1e+02 Score=28.66 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=29.7
Q ss_pred CcEEEecCC-CCChhHHHHHHHHHHHcCCCHHHHHHHHHhhc
Q 025490 135 GGVLVHCFA-GVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (252)
Q Consensus 135 G~VLVHC~a-G~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r 175 (252)
++..-||.+ |.|.. ++.|||.+.++++.||+..+....
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 467889964 44444 679999999999999999776554
No 113
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=26.48 E-value=93 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCC
Q 025490 121 LDVCFDFIDRRRKEGGVLVHCFAG 144 (252)
Q Consensus 121 ~~~~~~fI~~~~~~G~VLVHC~aG 144 (252)
+.++++-+ ....+++++|++.+|
T Consensus 74 ~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 74 LPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHH-hhccCCCEEEEeCCC
Confidence 44556666 666789999999988
No 114
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=26.40 E-value=3e+02 Score=21.11 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=14.2
Q ss_pred HHhhhCCCcEEEEccc
Q 025490 21 LQNGSSEITHMLSVLS 36 (252)
Q Consensus 21 ~~L~~~gIt~IVnl~~ 36 (252)
..|++.||+.||+|..
T Consensus 7 ~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHCCCeEEEEECC
Confidence 4689999999999987
No 115
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=26.04 E-value=42 Score=26.08 Aligned_cols=23 Identities=22% Similarity=-0.094 Sum_probs=18.4
Q ss_pred HHhhcccccchhhhhhhhchhhh
Q 025490 171 IFSLEYYESTQSYCLFLSDEYEI 193 (252)
Q Consensus 171 v~~~r~~~~~~~~~~~~~~~~~~ 193 (252)
|+++||.+.+...++.+|.+||.
T Consensus 115 v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 115 VKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred HHHHCCccCCCHhHHHHHHHHhh
Confidence 45677888888889989888873
No 116
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=25.87 E-value=61 Score=26.60 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhCC-cEEEecCC
Q 025490 123 VCFDFIDRRRKEG-GVLVHCFA 143 (252)
Q Consensus 123 ~~~~fI~~~~~~G-~VLVHC~a 143 (252)
-++.+++++...| +|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 6889999999999 59999954
No 117
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=25.80 E-value=99 Score=22.51 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=16.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
.|+|+|..|. ||.. +++++...|..
T Consensus 68 ~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 68 ELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred eEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 5999999986 6644 34555555653
No 118
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=25.34 E-value=44 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=18.9
Q ss_pred HHHhhcccccchhhhhhhhchhhh
Q 025490 170 FIFSLEYYESTQSYCLFLSDEYEI 193 (252)
Q Consensus 170 ~v~~~r~~~~~~~~~~~~~~~~~~ 193 (252)
++++.||.+.+...+..+|.+||.
T Consensus 109 ~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 109 YVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHhhc
Confidence 346778888888888888888873
No 119
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=24.35 E-value=85 Score=22.71 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=10.8
Q ss_pred cEEEecCCCCChhHH
Q 025490 136 GVLVHCFAGVSRSAA 150 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~ 150 (252)
+|+|+|..|. ||..
T Consensus 56 ~iv~~c~~g~-~s~~ 69 (99)
T cd01527 56 AIIFHCRSGM-RTQQ 69 (99)
T ss_pred cEEEEeCCCc-hHHH
Confidence 5999999986 5543
No 120
>PRK07411 hypothetical protein; Validated
Probab=23.43 E-value=1.1e+02 Score=29.06 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=17.9
Q ss_pred CCcEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 134 ~G~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
..+|+|||..|. ||.. + +..++..|.+
T Consensus 342 d~~IVvyC~~G~-RS~~-a-a~~L~~~G~~ 368 (390)
T PRK07411 342 GHRLIAHCKMGG-RSAK-A-LGILKEAGIE 368 (390)
T ss_pred CCeEEEECCCCH-HHHH-H-HHHHHHcCCC
Confidence 345999999887 8854 3 3344556764
No 121
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.40 E-value=2.8e+02 Score=22.22 Aligned_cols=47 Identities=32% Similarity=0.518 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHhhCCc-EEEecCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 025490 116 NLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYY 177 (252)
Q Consensus 116 ~l~~~~~~~~~fI~~~~~~G~-VLVHC~aG~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r~~ 177 (252)
++....+.+++|+++ ..++ |++=| +-||+.+.| ++.+++++.+++=.
T Consensus 59 ~L~~l~~~i~~fl~~--~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~ 106 (136)
T PF05763_consen 59 NLHKLLDTIVRFLKE--NGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDY 106 (136)
T ss_pred hhHHHHHHHHHHHHh--CCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHH
Confidence 344444455555554 2334 88887 579999877 78889999988743
No 122
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=23.13 E-value=1.5e+02 Score=22.38 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=11.7
Q ss_pred cEEEecCCCCChhHHHH
Q 025490 136 GVLVHCFAGVSRSAAII 152 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv 152 (252)
.|+|+|..| .||..++
T Consensus 62 ~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 62 TVKLYCNAG-RQSGQAK 77 (104)
T ss_pred eEEEEeCCC-hHHHHHH
Confidence 499999988 3665543
No 123
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=22.71 E-value=1.3e+02 Score=28.95 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCC-c-EEEecC----------------CCCChhHHHHHHHHHHHcCCC-HHHHHHHH
Q 025490 123 VCFDFIDRRRKEG-G-VLVHCF----------------AGVSRSAAIITAYLMRTEQLS-SEGLNKFI 171 (252)
Q Consensus 123 ~~~~fI~~~~~~G-~-VLVHC~----------------aG~sRS~~lv~ayLm~~~~~s-~~eA~~~v 171 (252)
..++.|++..++| . +-|||. .=+||.+++.++|++....-+ +-+-++++
T Consensus 144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~l 211 (431)
T PRK13352 144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYL 211 (431)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHH
Confidence 4567788888888 4 999994 226999999999999876543 44444433
No 124
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.04 E-value=74 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHH--hhCCcEEEecCCCCChh
Q 025490 121 LDVCFDFIDRR--RKEGGVLVHCFAGVSRS 148 (252)
Q Consensus 121 ~~~~~~fI~~~--~~~G~VLVHC~aG~sRS 148 (252)
+..+++.|... ...|+++|||....+-.
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 44566666655 45788999998877654
No 125
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=21.65 E-value=1.9e+02 Score=25.35 Aligned_cols=59 Identities=17% Similarity=0.344 Sum_probs=38.9
Q ss_pred EecCCCCCC-cHHHHHHHHHHHHHHHhhC-CcEEEecCCCCChhHHHHHHHHHHHcCCCHH
Q 025490 107 VPIRDMESE-NLLDYLDVCFDFIDRRRKE-GGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (252)
Q Consensus 107 ipi~D~~~~-~l~~~~~~~~~fI~~~~~~-G~VLVHC~aG~sRS~~lv~ayLm~~~~~s~~ 165 (252)
.|++|..++ +.....+.+.+.|.+..++ |..+.-|.+|--++-++.++|-+.-+|-..+
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~gr~~D 142 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFGRPQD 142 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcCCccc
Confidence 356665433 3344456666777777666 5577778888878888888887777674433
No 126
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.79 E-value=80 Score=24.21 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=10.7
Q ss_pred cEEEecCCCCChh
Q 025490 136 GVLVHCFAGVSRS 148 (252)
Q Consensus 136 ~VLVHC~aG~sRS 148 (252)
+||+-|.+|+|=|
T Consensus 3 kILlvCg~G~STS 15 (104)
T PRK09590 3 KALIICAAGMSSS 15 (104)
T ss_pred EEEEECCCchHHH
Confidence 5999999999444
No 127
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.52 E-value=2.2e+02 Score=21.67 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 025490 145 VSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYY 177 (252)
Q Consensus 145 ~sRS~~lv~ayLm~~~~~s~~eA~~~v~~~r~~ 177 (252)
.|||||-...+.+-..|.|..+-++.++...-.
T Consensus 48 ~g~SPt~eLL~~WG~~n~Tv~~L~~~L~k~kl~ 80 (97)
T cd08307 48 RGRSPTEELLDIWGNKNHTITELFVLLYREKLF 80 (97)
T ss_pred CCCChHHHHHHHHhhcCCCHHHHHHHHHHhchH
Confidence 459999999988877899999877777766554
No 128
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.31 E-value=63 Score=23.11 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.8
Q ss_pred cEEEecCCCCChhHHH
Q 025490 136 GVLVHCFAGVSRSAAI 151 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~l 151 (252)
+|+|-|.+|+|=|..+
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999777444
No 129
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=20.24 E-value=79 Score=28.82 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=12.9
Q ss_pred hhCC-cEEEecCCCCChhHH
Q 025490 132 RKEG-GVLVHCFAGVSRSAA 150 (252)
Q Consensus 132 ~~~G-~VLVHC~aG~sRS~~ 150 (252)
+..+ .|.++|..|..=|.+
T Consensus 231 i~~~~~vI~yCgsG~~As~~ 250 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVT 250 (285)
T ss_pred CCCCCCEEEEcCCchHHHHH
Confidence 3444 499999999844444
No 130
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=20.18 E-value=2e+02 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=17.8
Q ss_pred cEEEecCCCCChhHHHHHHHHHHHcCCC
Q 025490 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (252)
Q Consensus 136 ~VLVHC~aG~sRS~~lv~ayLm~~~~~s 163 (252)
+|+|+|..|-.||..++ +++...|..
T Consensus 90 ~ivvyC~rgG~RS~~aa--~~L~~~G~~ 115 (345)
T PRK11784 90 RGLLYCWRGGLRSGSVQ--QWLKEAGID 115 (345)
T ss_pred eEEEEECCCChHHHHHH--HHHHHcCCC
Confidence 59999976666987753 444555653
No 131
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=20.12 E-value=1.7e+02 Score=28.24 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCC-c-EEEecC-----------C-----CCChhHHHHHHHHHHHcCCC-HHHHHHHH
Q 025490 122 DVCFDFIDRRRKEG-G-VLVHCF-----------A-----GVSRSAAIITAYLMRTEQLS-SEGLNKFI 171 (252)
Q Consensus 122 ~~~~~fI~~~~~~G-~-VLVHC~-----------a-----G~sRS~~lv~ayLm~~~~~s-~~eA~~~v 171 (252)
+..++.|++..++| . +-|||. . =+||.+++.++|++....-+ +-+-++++
T Consensus 140 d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~l 208 (423)
T TIGR00190 140 DDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYI 208 (423)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHH
Confidence 34567788888888 4 999994 1 26999999999999876543 44444433
Done!